BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9445
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 193 bits (491), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 91/160 (56%), Positives = 121/160 (75%), Gaps = 2/160 (1%)
Query: 81 HIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKY 140
++ RPLNS ER +S +VD RE+ + ++ K++K F FDR F ESKQ DVY
Sbjct: 28 YVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSV 87
Query: 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLF 200
VV+PLI+EVL+GYNCTVFAYGQTGTGKT TM G ++ + SW+DD GI+PRA++HLF
Sbjct: 88 VVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLF 147
Query: 201 DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRL 240
DELR++ + E+T+R+S+LE+YNEEL DLLS TDD TK+R+
Sbjct: 148 DELRMM-EVEYTMRISYLELYNEELCDLLS-TDDTTKIRI 185
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDK-RAREAG 59
MNA SSRSHT+F+I +HI++N ++GE++L+ GKLNLVDLAGSEN+ ++G + R RE
Sbjct: 229 MNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETV 288
Query: 60 NINQSLLTLGRCITALVEKTPHIPYR 85
NINQSLLTLGR ITALV++ PH+PYR
Sbjct: 289 NINQSLLTLGRVITALVDRAPHVPYR 314
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 176 bits (447), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 26 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 85
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F+
Sbjct: 86 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE 145
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 146 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 288 INQSLLTLGRVITALVERTPHVPYR 312
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 176 bits (447), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 28 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 87
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F+
Sbjct: 88 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE 147
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 148 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 182
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 230 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 289
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 290 INQSLLTLGRVITALVERTPHVPYR 314
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 176 bits (447), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 26 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 85
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F+
Sbjct: 86 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE 145
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 146 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 288 INQSLLTLGRVITALVERTPHVPYR 312
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 25 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 84
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F+
Sbjct: 85 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE 144
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 145 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 179
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 227 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 286
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 287 INQSLLTLGRVITALVERTPHVPYR 311
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 17 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 76
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F+
Sbjct: 77 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE 136
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 137 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 171
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 219 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 278
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 279 INQSLLTLGRVITALVERTPHVPYR 303
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 11 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 70
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F+
Sbjct: 71 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE 130
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 131 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 165
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 213 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 272
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 273 INQSLLTLGRVITALVERTPHVPYR 297
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 26 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 85
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL GI+PR ++ +F+
Sbjct: 86 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIPRTLHQIFE 145
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 146 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 288 INQSLLTLGRVITALVERTPHVPYR 312
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 173 bits (438), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 26 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 85
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++ PL+GI+PR ++ +F+
Sbjct: 86 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIPRTLHQIFE 145
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 146 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 288 INQSLLTLGRVITALVERTPHVPYR 312
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+ R E++++ + DK S KT+ FD VF +KQ+DVY+ V
Sbjct: 26 RPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 85
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYN T+FAYGQTGTGKTFTMEGE+S + W++DPL+GI+PR ++ +F+
Sbjct: 86 VAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIPRTLHQIFE 145
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
+L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 146 KLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 228 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 287
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 288 INQSLLTLGRVITALVERTPHVPYR 312
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 12/162 (7%)
Query: 85 RPLNSVERAAKSCSIVDCSSS-REITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYV 141
RPL+ E AA I+ ++T++ ++ KTF FD V+ SKQ D+Y
Sbjct: 30 RPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDET 89
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V PLID VL G+N TVFAYGQTGTGKT+TM+G +W + L G++P A H+F
Sbjct: 90 VRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQG--------TWVEPELRGVIPNAFEHIFT 141
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
+ + ++ VR S+LEIY EE+ DLLS + +L LK+N
Sbjct: 142 HISRSQNQQYLVRASYLEIYQEEIRDLLS-KEPGKRLELKEN 182
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 55/110 (50%), Gaps = 25/110 (22%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQ--------- 51
MN SSRSH IF IT+ + DG++ +R GKLNLVDLAGSE ++G
Sbjct: 221 MNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPS 280
Query: 52 ---------------DKRAREAGNINQSLLTLGRCITALV-EKTPHIPYR 85
+R +EA IN SL LG I AL ++ HIPYR
Sbjct: 281 SGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYR 330
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 95/161 (59%), Gaps = 12/161 (7%)
Query: 85 RPLNSVERAAKSCSIVDCSSS-REITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYV 141
RP+N E+AA +VD ++++K + ++ KTF FD V+ +KQ ++Y
Sbjct: 30 RPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDET 89
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
PL+D VL G+N T+FAYGQTGTGKT+TMEG + D G++P + +H+F
Sbjct: 90 FRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG--------DPEKRGVIPNSFDHIFT 141
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLKK 242
+ + ++ VR S+LEIY EE+ DLLS D +L LK+
Sbjct: 142 HISRSQNQQYLVRASYLEIYQEEIRDLLS-KDQTKRLELKE 181
Score = 100 bits (249), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH IF ITI + LDGE +R GKLNLVDLAGSE ++GAQ +R +EA
Sbjct: 221 MNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATK 280
Query: 61 INQSLLTLGRCITALVE-KTPHIPYR 85
IN SL LG I+ALV+ K+ HIPYR
Sbjct: 281 INLSLSALGNVISALVDGKSTHIPYR 306
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 11/161 (6%)
Query: 84 YRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVN 143
+RP N VE + IV T+ + + +F FDRVF KQ D++ + +
Sbjct: 14 FRPQNRVEIESGGQPIVTFQGPDTCTVDSK---EAQGSFTFDRVFDMSCKQSDIFDFSIK 70
Query: 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE- 202
P +D++L+GYN TVFAYGQTG GK++TM G +DP G++PR + +F
Sbjct: 71 PTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD-------GRGVIPRIVEQIFTSI 123
Query: 203 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
L + E+TVRVS++EIY E + DLL+P +D + +KN
Sbjct: 124 LSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKN 164
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 11/113 (9%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH+IF ITI K+ ++G+L LVDLAGSE +G++GA + EA
Sbjct: 201 MNQESSRSHSIFVITITQKNVETGSA---KSGQLFLVDLAGSEKVGKTGASGQTLEEAKK 257
Query: 61 INQSLLTLGRCITALVE-KTPHIPYRP-------LNSVERAAKSCSIVDCSSS 105
IN+SL LG I AL + K+ H+PYR S+ +++ I++CS S
Sbjct: 258 INKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPS 310
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 15/159 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPLNS E + + V + + + V+ SK+F FDRVF +VY+ + P
Sbjct: 13 RPLNSREESLGETAQVYWKTDNNVIYQ--VDG--SKSFNFDRVFHGNETTKNVYEEIAAP 68
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
+ID + GYN T+FAYGQT +GKT+TM G +D L G++PRA++ +F +++
Sbjct: 69 IIDSAIQGYNGTIFAYGQTASGKTYTMMG----------SEDHL-GVIPRAIHDIFQKIK 117
Query: 205 LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
D EF +RVS++EIYNE + DLL T + L ++++
Sbjct: 118 KFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIRED 156
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1 MNAHSSRSHTIFTITIHIKDNS--LDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREA 58
MN SSRSHTIF + + ++ + E ++ LNLVDLAGSE ++GA R +E
Sbjct: 195 MNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEG 254
Query: 59 GNINQSLLTLGRCITAL 75
NIN+SL LG+ I L
Sbjct: 255 CNINRSLFILGQVIKKL 271
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 33/237 (13%)
Query: 13 TITIHIKDNSLDGEELLRTGKLNLVDL-AGSENIGRSGAQDKRAREAGNINQSLLTLGRC 71
T +H++ + EELLR + +L E + +S + K ++ +++ L
Sbjct: 18 TEVVHLRQRT---EELLRCNEQQAAELETCKEQLFQSNMERKE------LHNTVMDLRGN 68
Query: 72 ITALVEKTPHIPYRPLNSVE-RAAKSCSIVDCSSSREITIKERVNDKI-SKTFGFDRVFS 129
I P PL S E R + + D S+ +I + K+ + F FD+VF
Sbjct: 69 IRVFCRIRP-----PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFH 123
Query: 130 QESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS 189
S Q D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G P S
Sbjct: 124 PLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV------------PES 170
Query: 190 -GIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ KN
Sbjct: 171 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKN 227
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N SSRSH + + + I ++ E + G +NLVDLAGSE S R E NI
Sbjct: 267 NERSSRSHAVTKLEL-IGRHAEKQE--ISVGSINLVDLAGSE----SPKTSTRMTETKNI 319
Query: 62 NQSLLTLGRCITALVEKTPHIPYR 85
N+SL L I AL++K HIPYR
Sbjct: 320 NRSLSELTNVILALLQKQDHIPYR 343
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 33/237 (13%)
Query: 13 TITIHIKDNSLDGEELLRTGKLNLVDL-AGSENIGRSGAQDKRAREAGNINQSLLTLGRC 71
T +H++ + EELLR + +L E + +S + K ++ +++ L
Sbjct: 10 TEVVHLRQRT---EELLRCNEQQAAELETCKEQLFQSNMERKE------LHNTVMDLRDN 60
Query: 72 ITALVEKTPHIPYRPLNSVE-RAAKSCSIVDCSSSREITIKERVNDKI-SKTFGFDRVFS 129
I P PL S E R + + D S+ +I + K+ + F FD+VF
Sbjct: 61 IRVFCRIRP-----PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFH 115
Query: 130 QESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS 189
S Q D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G P S
Sbjct: 116 PLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV------------PES 162
Query: 190 -GIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ KN
Sbjct: 163 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKN 219
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N SSRSH + + + I ++ E + G +NLVDLAGSE S R E NI
Sbjct: 259 NERSSRSHAVTKLEL-IGRHAEKQE--ISVGSINLVDLAGSE----SPKTSTRMTETKNI 311
Query: 62 NQSLLTLGRCITALVEKTPHIPYR 85
N+SL L I AL++K HIPYR
Sbjct: 312 NRSLSELTNVILALLQKQDHIPYR 335
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 16/127 (12%)
Query: 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDP 179
+ F FD+VF S Q D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G
Sbjct: 103 QIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----- 156
Query: 180 SISWQDDPLS-GIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDIT 236
P S G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS
Sbjct: 157 -------PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM 209
Query: 237 KLRLKKN 243
++R+ KN
Sbjct: 210 EIRMAKN 216
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N SSRSH + + + I ++ E + G +NLVDLAGSE S R E NI
Sbjct: 256 NERSSRSHAVTKLEL-IGRHAEKQE--ISVGSINLVDLAGSE----SPKTSTRMTETKNI 308
Query: 62 NQSLLTLGRCITALVEKTPHIPYR 85
+SL L I AL++K HIPYR
Sbjct: 309 KRSLSELTNVILALLQKQDHIPYR 332
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 16/127 (12%)
Query: 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDP 179
+ F FD+VF S Q D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G
Sbjct: 100 QIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----- 153
Query: 180 SISWQDDPLS-GIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDIT 236
P S G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS
Sbjct: 154 -------PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM 206
Query: 237 KLRLKKN 243
++R+ KN
Sbjct: 207 EIRMAKN 213
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N SSRSH + + + I ++ E + G +NLVDLAGSE S R E NI
Sbjct: 253 NERSSRSHAVTKLEL-IGRHAEKQE--ISVGSINLVDLAGSE----SPKTSTRMTETKNI 305
Query: 62 NQSLLTLGRCITALVEKTPHIPYR 85
N+SL L I AL++K HIPYR
Sbjct: 306 NRSLSELTNVILALLQKQDHIPYR 329
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 31/236 (13%)
Query: 13 TITIHIKDNSLDGEELLRTGKLNLVDL-AGSENIGRSGAQDKRAREAGNINQSLLTLGRC 71
T +H++ + EELLR + +L E + +S + K ++ +++ L
Sbjct: 7 TEVVHLRQRT---EELLRCNEQQAAELETCKEQLFQSNMERKE------LHNTVMDLRGN 57
Query: 72 ITALVEKTPHIPYRPLNSVE-RAAKSCSIVDCSSSREITIKERVNDKI-SKTFGFDRVFS 129
I P PL S E R + + D S+ +I + K+ + F FD+VF
Sbjct: 58 IRVFCRIRP-----PLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFH 112
Query: 130 QESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS 189
S Q D+++ +V+PLI L GYN +FAYGQ+G+GKT+TM+G +
Sbjct: 113 PLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPES-----------V 160
Query: 190 GIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ KN
Sbjct: 161 GVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKN 216
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N SSRSH + + + I ++ E + G +NLVDLAGSE S R E NI
Sbjct: 256 NERSSRSHAVTKLEL-IGRHAEKQE--ISVGSINLVDLAGSE----SPKTSTRMTETKNI 308
Query: 62 NQSLLTLGRCITALVEKTPHIPYR 85
N+SL L I AL++K HIPYR
Sbjct: 309 NRSLSELTNVILALLQKQDHIPYR 332
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 23/168 (13%)
Query: 85 RPLNSVERAAKSCSIVDC-SSSREITIKERVNDK-------ISKTFGFDRVFSQESKQVD 136
RPLN+ E + +I+ +S ++ + +K + +TF FD V+ Q S
Sbjct: 13 RPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYG 72
Query: 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 196
+++ PLID VL G+N T+FAYGQTG GKT+TM G K ++P G +P +
Sbjct: 73 IFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK---------EEP--GAIPNSF 121
Query: 197 NHLFDELR-LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
HLFD + + F V S+LE+YNEE+ DL+ + TKL LK++
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK---NNTKLPLKED 166
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH+IF + I + ++ +E++R GKLNLVDLAGSE ++GA + E
Sbjct: 205 MNDTSSRSHSIFMVRIECSE-VIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAK 263
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN SL LG I+ LVE HIPYR
Sbjct: 264 INLSLSALGLVISKLVEGATHIPYR 288
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 17/158 (10%)
Query: 84 YRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVN 143
+RPLN E A S +V ++ ++E K + FD+VF + Q VY
Sbjct: 19 FRPLNDSEEKAGSKFVVKFPNN----VEENCISIAGKVYLFDKVFKPNASQEKVYNEAAK 74
Query: 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL 203
++ +VL+GYN T+FAYGQT +GKT TMEG D GI+PR +N +F+ +
Sbjct: 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTMEG--------VIGDSVKQGIIPRIVNDIFNHI 126
Query: 204 RLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRL 240
+ + EF ++VS+ EIY +++ DLL D++K+ L
Sbjct: 127 YAMEVNLEFHIKVSYYEIYMDKIRDLL----DVSKVNL 160
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 59/86 (68%), Gaps = 4/86 (4%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH++F I ++K +L+ ++ L +GKL LVDLAGSE + ++GA+ EA N
Sbjct: 204 MNEHSSRSHSVFLI--NVKQENLENQKKL-SGKLYLVDLAGSEKVSKTGAEGTVLDEAKN 260
Query: 61 INQSLLTLGRCITALVE-KTPHIPYR 85
IN+SL LG I+AL + HIPYR
Sbjct: 261 INKSLSALGNVISALADGNKTHIPYR 286
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 10/111 (9%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FDRVF S Q +V++ + L+ L GY +FAYGQTG+GKTFTMEG DP
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ- 142
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVR--VSFLEIYNEELIDLLS 230
L G++PRA+ HLF + L +T S++EIYNE + DLL+
Sbjct: 143 ------LEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLA 187
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 9/89 (10%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTG-KLNLVDLAGSE----NIGRSGAQDKRAR 56
N SSRSH++F + I + +S L+ G L+LVDLAGSE + + +R R
Sbjct: 245 NERSSRSHSVFQLQISGEHSSRG----LQCGAPLSLVDLAGSERLDPGLALGPGERERLR 300
Query: 57 EAGNINQSLLTLGRCITALVEKTPHIPYR 85
E IN SL TLG I AL K H+PYR
Sbjct: 301 ETQAINSSLSTLGLVIMALSNKESHVPYR 329
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 110 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTML--------- 159
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 229
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 160 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLL 205
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N HSSRSH+IF I + N+ G G LNLVDLAGSE I S R RE NI
Sbjct: 267 NEHSSRSHSIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNI 323
Query: 62 NQSLLTLGRCITALVEKTP---HIPYR 85
N+SL LG I AL + HIP+R
Sbjct: 324 NKSLSALGDVIHALGQPDSTKRHIPFR 350
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 113 RVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172
RV + FGF V ++++ Q VY+ V PL++ G+N TVFAYGQTG+GKT+TM
Sbjct: 43 RVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM- 101
Query: 173 GEKSNDPSISWQDDPLSGIVPRAMNHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLL 229
+ S++ + GIVPRAM F DE LL + V VS+LE+Y EE DLL
Sbjct: 102 ----GEASVASLLEDEQGIVPRAMAEAFKLIDENDLL---DCLVHVSYLEVYKEEFRDLL 154
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLD-----GEELLRTGKLNLVDLAGSENIGRSGAQDKRA 55
+N SSRSHT+FT+T+ + + L K + VDLAGSE + ++G+ +R
Sbjct: 207 LNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERL 266
Query: 56 REAGNINQSLLTLGRCITALVE---KTPHIPYR 85
+E+ IN SLL LG I+AL + + HIPYR
Sbjct: 267 KESIQINSSLLALGNVISALGDPQRRGSHIPYR 299
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 113 RVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172
RV + FGF V ++++ Q VY+ V PL++ G+N TVFAYGQTG+GKT+TM
Sbjct: 43 RVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM- 101
Query: 173 GEKSNDPSISWQDDPLSGIVPRAMNHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLL 229
+ S++ + GIVPRAM F DE LL + V VS+LE+Y EE DLL
Sbjct: 102 ----GEASVASLLEDEQGIVPRAMAEAFKLIDENDLL---DCLVHVSYLEVYKEEFRDLL 154
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 8/93 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLD-----GEELLRTGKLNLVDLAGSENIGRSGAQDKRA 55
+N SSRSHT+FT+T+ + + L K + VDLAGSE + ++G+ +
Sbjct: 207 LNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELR 266
Query: 56 REAGNINQSLLTLGRCITALVE---KTPHIPYR 85
+E+ IN SLL LG I+AL + + +IPYR
Sbjct: 267 KESIQINSSLLALGNVISALGDPQRRGSNIPYR 299
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 19/158 (12%)
Query: 84 YRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVN 143
+RPLN E I + I + K + FDRV + Q VY
Sbjct: 14 FRPLNEAEILRGDKFIPKFKGEETVVIGQ------GKPYVFDRVLPPNTTQEQVYNACAK 67
Query: 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL 203
++ +VL GYN T+FAYGQT +GKT TMEG K +DP L GI+PR + +FD +
Sbjct: 68 QIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPQ-------LMGIIPRIAHDIFDHI 119
Query: 204 RLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRL 240
+ + EF ++VS+ EIY +++ DLL D++K L
Sbjct: 120 YSMDENLEFHIKVSYFEIYLDKIRDLL----DVSKTNL 153
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENI 45
MN HSSRSH+IF I IK +++ E+ L +GKL LVDLAGSE +
Sbjct: 197 MNEHSSRSHSIFLIN--IKQENVETEKKL-SGKLYLVDLAGSEKV 238
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 103
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 229
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 104 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N HSS SH+IF I + N+ G G LNLVDLAGSE I S R RE NI
Sbjct: 211 NEHSSASHSIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNI 267
Query: 62 NQSLLTLGRCITALVEKTP---HIPYR 85
N+SL LG I AL + HIP+R
Sbjct: 268 NKSLSCLGDVIHALGQPDSTKRHIPFR 294
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 103
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 229
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 104 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N HSSRSH+IF I + N+ G G LNLVDLAGS I S R RE NI
Sbjct: 211 NEHSSRSHSIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSARINVSQVVGDRLRETQNI 267
Query: 62 NQSLLTLGRCITALVEKTP---HIPYR 85
N+SL LG I AL + HIP+R
Sbjct: 268 NKSLSCLGDVIHALGQPDSTKRHIPFR 294
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 20/158 (12%)
Query: 84 YRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVN 143
+RPLN E I + I SK + FDRVF + Q VY
Sbjct: 15 FRPLNESEVNRGDKYIAKFQGEDTVVIA-------SKPYAFDRVFQSSTSQEQVYNDCAK 67
Query: 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL 203
++ +VL GYN T+FAYGQT +GKT TMEG K +DP GI+PR + +F+ +
Sbjct: 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPE-------GMGIIPRIVQDIFNYI 119
Query: 204 RLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRL 240
+ + EF ++VS+ EIY +++ DLL D++K L
Sbjct: 120 YSMDENLEFHIKVSYFEIYLDKIRDLL----DVSKTNL 153
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH+IF I ++K + E+ L +GKL LVDLAGSE + ++GA+ EA N
Sbjct: 197 MNEHSSRSHSIFLI--NVKQENTQTEQKL-SGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SL LG I+AL E + ++PYR
Sbjct: 254 INKSLSALGNVISALAEGSTYVPYR 278
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 103
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 229
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 104 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N HSSRSH+IF I + N+ G G LNLVDLAGSE I S R RE NI
Sbjct: 211 NEHSSRSHSIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNI 267
Query: 62 NQSLLTLGRCITALVEKTP---HIPYR 85
+SL LG I AL + HIP+R
Sbjct: 268 KKSLSCLGDVIHALGQPDSTKRHIPFR 294
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 53 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 102
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 229
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 103 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 148
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N HSSRSH+IF I + N+ G G LNLVDLAGSE I S R RE NI
Sbjct: 210 NEHSSRSHSIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNI 266
Query: 62 NQSLLTLGRCITALVEKTP---HIPYR 85
N+SL LG I AL + HIP+R
Sbjct: 267 NKSLSCLGDVIHALGQPDSTKRHIPFR 293
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 82/158 (51%), Gaps = 20/158 (12%)
Query: 84 YRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVN 143
+RPLN E I + I SK + FDRVF + Q VY
Sbjct: 15 FRPLNESEVNRGDKYIAKFQGEDTVVIA-------SKPYAFDRVFQSSTSQEQVYNDCAK 67
Query: 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL 203
++ +VL GYN T+FAYGQT +GKT TMEG K +DP GI+PR + +F+ +
Sbjct: 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPE-------GMGIIPRIVQDIFNYI 119
Query: 204 RLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRL 240
+ + EF ++VS+ EIY +++ DLL D++K L
Sbjct: 120 YSMDENLEFHIKVSYFEIYLDKIRDLL----DVSKTNL 153
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH+IF I ++K + E+ L +GKL LVDLAGSE + ++GA+ EA N
Sbjct: 197 MNEHSSRSHSIFLI--NVKQENTQTEQKL-SGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SL LG I+AL E + ++PYR
Sbjct: 254 INKSLSALGNVISALAEGSTYVPYR 278
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 65 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 114
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 229
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 115 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 160
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N HSSRSH+IF I + N+ G G LNLVDLAGSE I S R RE NI
Sbjct: 222 NEHSSRSHSIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNI 278
Query: 62 NQSLLTLGRCITALVEKTP---HIPYR 85
N+SL LG I AL + HIP+R
Sbjct: 279 NKSLSCLGDVIHALGQPDSTKRHIPFR 305
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 87/167 (52%), Gaps = 28/167 (16%)
Query: 85 RPLN---SVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVY--- 138
RPLN S ER + + VD E T++ D K +DRVF + Q D++
Sbjct: 22 RPLNEKESSEREKQMLTTVD-----EFTVEHPWKDDKRKQHIYDRVFDMRASQDDIFEDT 76
Query: 139 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 198
KY+V +D GYN +FAYGQTG+GKTFT+ G +SN G+ PRA
Sbjct: 77 KYLVQSAVD----GYNVCIFAYGQTGSGKTFTIYGHESN-----------PGLTPRATKE 121
Query: 199 LFDEL-RLLGDAEFTVRVSFLEIYNEELIDLLSP-TDDITKLRLKKN 243
LF+ L R F+++ +E+Y + L+DLL P + KL +KK+
Sbjct: 122 LFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKD 168
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH I ++ I D L + R GKL+ VDLAGSE + +SG+ + +EA +
Sbjct: 207 MNEESSRSHLILSVVIESID--LQTQSAAR-GKLSFVDLAGSERVKKSGSAGNQLKEAQS 263
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SL LG I AL HIPYR
Sbjct: 264 INKSLSALGDVIGALSSGNQHIPYR 288
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 13/123 (10%)
Query: 119 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSND 178
SK + FDRVF + Q VY ++ +VL GYN T+FAYGQT +GK TMEG K +D
Sbjct: 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEG-KLHD 101
Query: 179 PSISWQDDPLSGIVPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITK 237
P GI+PR + +F+ + + + EF ++VS+ EIY +++ DLL D++K
Sbjct: 102 PE-------GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL----DVSK 150
Query: 238 LRL 240
L
Sbjct: 151 TNL 153
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH+IF I ++K + E+ L +GKL LVDLAGSE + ++GA+ EA N
Sbjct: 197 MNEHSSRSHSIFLI--NVKQENTQTEQKL-SGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SL LG I+AL E + ++PYR
Sbjct: 254 INKSLSALGNVISALAEGSTYVPYR 278
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 80/151 (52%), Gaps = 21/151 (13%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVY---KYV 141
RPL E AK + + S E T++ D +K +DRVF + Q DV+ KY+
Sbjct: 14 RPLCEKEIIAKERNAI--RSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYL 71
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V +D GYN +FAYGQTG+GKTFT+ G SN G+ PRAM+ LF
Sbjct: 72 VQSAVD----GYNVCIFAYGQTGSGKTFTIYGADSN-----------PGLTPRAMSELFR 116
Query: 202 ELRLLGDA-EFTVRVSFLEIYNEELIDLLSP 231
++ + F+++ +E+Y + L+DLL P
Sbjct: 117 IMKKDSNKFSFSLKAYMVELYQDTLVDLLLP 147
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH I +++ I+ +L + + R GKL+ VDLAGSE + +SG+ + +EA +
Sbjct: 199 MNEQSSRSHLI--VSVIIESTNLQTQAIAR-GKLSFVDLAGSERVKKSGSAGNQLKEAQS 255
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SL LG I+AL HIPYR
Sbjct: 256 INKSLSALGDVISALSSGNQHIPYR 280
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD++F Q+ +++K V LI L GYN +FAYGQTG+GKT+TM
Sbjct: 76 FKFDKIFDQQETNDEIFKEV-GQLIQSSLDGYNVCIFAYGQTGSGKTYTML--------- 125
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVS--FLEIYNEELIDLL 229
+P GIVP +NH+F + L ++ +VS F+EIYNE ++DLL
Sbjct: 126 ----NPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLL 171
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N HSSRSH+IF I + K N GE+ G LNLVDLAGSE + S +R RE +I
Sbjct: 235 NEHSSRSHSIFIIHLEGK-NEGTGEK--SQGILNLVDLAGSERLNSSMVVGERLRETQSI 291
Query: 62 NQSLLTLGRCITALVE---KTPHIPYR 85
N+SL LG I AL + HIP+R
Sbjct: 292 NKSLSCLGDVIHALNSPDGQKRHIPFR 318
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
+N HSSRSH + +T+ D S L TGKLNLVDLAGSE +G+SGA+ R REA +
Sbjct: 200 LNEHSSRSHALLIVTVRGVDCSTG---LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQH 256
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SL LG I AL + H+P+R
Sbjct: 257 INKSLSALGDVIAALRSRQGHVPFR 281
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 64/110 (58%), Gaps = 13/110 (11%)
Query: 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPS 180
+F D+VFS ++ Q DV++ V L+ + G+N +FAYGQTG GKT+TMEG N
Sbjct: 49 SFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAEN--- 104
Query: 181 ISWQDDPLSGIVPRAMNHLFDELR-LLGDAEFTVRVSFLEIYNEELIDLL 229
GI RA+ LF E++ D E+T+ VS EIYNE L DLL
Sbjct: 105 --------PGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLL 146
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 18/146 (12%)
Query: 100 VDCSSSREITIKERVNDKISKT-FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158
++ S +E+ I +N+ S F FD++F +E V++ + + LI L G N VF
Sbjct: 409 INDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVF 467
Query: 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVS 216
AYGQTG+GKTFTM P +G++P ++ +F+++ L + +TVR
Sbjct: 468 AYGQTGSGKTFTMS-------------HPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGK 514
Query: 217 FLEIYNEELIDLLSP-TDDITKLRLK 241
F+EIYNE ++DLL+P D TK +K
Sbjct: 515 FIEIYNEAIVDLLNPKIDPNTKYEIK 540
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N HSSRSH+IF I + NSL E G LNL+DLAGSE + S A+ R +E I
Sbjct: 583 NDHSSRSHSIFIIDLQ-GYNSLTKES--SYGTLNLIDLAGSERLNNSRAEGDRLKETQAI 639
Query: 62 NQSLLTLGRCITAL-VEKTPHIPYR 85
N+SL LG I +L ++ H+PYR
Sbjct: 640 NKSLSCLGDVIHSLNLKDGSHVPYR 664
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 115 NDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 174
N + +F D V S+ + VY+ V ++ + L GYN T+ YGQTG GKT+TM G
Sbjct: 67 NQQTDWSFKLDGVLHDASQDL-VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGA 125
Query: 175 KSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLS 230
N GI+PRA+ +F + TVRVS+LEIYNE L DLLS
Sbjct: 126 TENYKH--------RGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 173
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN +SSRSH IFTI + +L E+ + T K+NLVDLAGSE +G+SG++ + +EA
Sbjct: 228 MNKNSSRSHCIFTIYLEAHSRTLSEEKYI-TSKINLVDLAGSERLGKSGSEGQVLKEATY 286
Query: 61 INQSLLTLGRCITALV-EKTPHIPYR 85
IN+SL L + I AL +K HIP+R
Sbjct: 287 INKSLSFLEQAIIALGDQKRDHIPFR 312
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVD 136
RP NS E + S I+ S S + + + K+F FD + + Q
Sbjct: 13 RPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQ 72
Query: 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 196
VY+ + ++ GYN +FAYGQTG GK++TM G++ D GI+P+
Sbjct: 73 VYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ---------QGIIPQLC 123
Query: 197 NHLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSP 231
LF + + ++V VS++EIY E + DLL+P
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 17/100 (17%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRT---GKLNLVDLAGSENIGRSGAQDKRARE 57
MN SSRSH +F I K + D E + T K++LVDLAGSE +GA+ R +E
Sbjct: 210 MNETSSRSHAVFNIIFTQKRH--DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKE 267
Query: 58 AGNINQSLLTLGRCITALVE------------KTPHIPYR 85
NIN+SL TLG+ I+AL E KT IPYR
Sbjct: 268 GANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 307
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVD 136
RP NS E + S I+ S S + + + K+F FD + + Q
Sbjct: 13 RPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQ 72
Query: 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 196
VY+ + ++ GYN +FAYGQTG GK++TM G++ D GI+P+
Sbjct: 73 VYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ---------QGIIPQLC 123
Query: 197 NHLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSP 231
LF + + ++V VS++EIY E + DLL+P
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 17/100 (17%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRT---GKLNLVDLAGSENIGRSGAQDKRARE 57
MN SSRSH +F I K + D E + T K++LVDLAGSE +GA+ R +E
Sbjct: 210 MNETSSRSHAVFNIIFTQKRH--DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKE 267
Query: 58 AGNINQSLLTLGRCITALVE------------KTPHIPYR 85
NIN+SL TLG+ I+AL E KT IPYR
Sbjct: 268 GANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 307
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVD 136
RP NS E + S I+ S S + + + K+F FD + + Q
Sbjct: 29 RPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQ 88
Query: 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 196
VY+ + ++ GYN +FAYGQTG GK++TM G++ D GI+P+
Sbjct: 89 VYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ---------QGIIPQLC 139
Query: 197 NHLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSP 231
LF + + ++V VS++EIY E + DLL+P
Sbjct: 140 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 176
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 17/100 (17%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRT---GKLNLVDLAGSENIGRSGAQDKRARE 57
MN SSRSH +F I K + D E + T K++LVDLAGSE +GA+ R +E
Sbjct: 226 MNETSSRSHAVFNIIFTQKRH--DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKE 283
Query: 58 AGNINQSLLTLGRCITALVE------------KTPHIPYR 85
NIN+SL TLG+ I+AL E KT IPYR
Sbjct: 284 GANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 323
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 84/164 (51%), Gaps = 30/164 (18%)
Query: 85 RPLNSVERAA---KSCSIVDCS------SSREITI---KERVNDKISKT------FGFDR 126
RP N+ E+AA K +VD E++ K+ N + K F FD
Sbjct: 19 RPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDA 78
Query: 127 VFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDD 186
VF + S Q +V+++ P++ L+GYNCTV AYG TG GKT TM G D+
Sbjct: 79 VFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS---------ADE 129
Query: 187 PLSGIVPRAMNHLFDELRLLGDAEF-TVRVSFLEIYNEELIDLL 229
P G++ M HL+ + + + + + VS+LE+YNE++ DLL
Sbjct: 130 P--GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL 171
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 54/88 (61%), Gaps = 3/88 (3%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA SSRSH +F I + +D + + +R K++L+DLAGSE SGA+ R E N
Sbjct: 221 MNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTN 280
Query: 61 INQSLLTLGRCITALVE---KTPHIPYR 85
IN+SLL LG I AL + K HIPYR
Sbjct: 281 INRSLLALGNVINALADSKRKNQHIPYR 308
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 19/157 (12%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVD 136
RP NS E + S I+ S S + + + K+F FD + + Q
Sbjct: 13 RPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQ 72
Query: 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 196
VY+ + ++ GYN +FAYGQTG GK++TM G++ D GI+P+
Sbjct: 73 VYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ---------QGIIPQLC 123
Query: 197 NHLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSP 231
LF + + ++V VS++EIY E + DLL+P
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 17/100 (17%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRT---GKLNLVDLAGSENIGRSGAQDKRARE 57
MN SSRSH +F I K + D E + T K++LVDLAGSE +GA+ R +E
Sbjct: 210 MNETSSRSHAVFNIIFTQKRH--DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKE 267
Query: 58 AGNINQSLLTLGRCITALVE------------KTPHIPYR 85
NIN+SL TLG+ I+AL E KT IPYR
Sbjct: 268 GANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 307
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 12/119 (10%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD F Q ++Y+ ++ PL+D++L G+ CT AYGQTGTGK+++M P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM----GMTPPG 118
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDAE-----FTVRVSFLEIYNEELIDLLSPTDDI 235
+ L GI+PRA+ +F+ R+ E V SF+EIYNE+ DLL T +
Sbjct: 119 EILPEHL-GILPRALGDIFE--RVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM 174
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN++SSRSH I +TIH+K + ++N+VDLAGSE + R+G + +E N
Sbjct: 213 MNSNSSRSHAI--VTIHVKSKT-------HHSRMNIVDLAGSEGVRRTGHEGVARQEGVN 263
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN LL++ + + ++ IPYR
Sbjct: 264 INLGLLSINKVVMSMAAGHTVIPYR 288
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 12/119 (10%)
Query: 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 181
F FD F Q ++Y+ ++ PL+D++L G+ CT AYGQTGTGK+++M P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM----GMTPPG 118
Query: 182 SWQDDPLSGIVPRAMNHLFDELRLLGDAE-----FTVRVSFLEIYNEELIDLLSPTDDI 235
+ L GI+PRA+ +F+ R+ E V SF+EIYNE+ DLL T +
Sbjct: 119 EILPEHL-GILPRALGDIFE--RVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM 174
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN++SSRSH I +TIH+K + ++N+VDLAGSE + R+G + +E N
Sbjct: 213 MNSNSSRSHAI--VTIHVKSKT-------HHSRMNIVDLAGSEGVRRTGHEGVARQEGVN 263
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN LL++ + + ++ IPYR
Sbjct: 264 INLGLLSINKVVMSMAAGHTVIPYR 288
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 31/177 (17%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISK--------TFGFDRVFSQESKQVD 136
RP+N E + +VD +++ I VN +SK F +D F + V
Sbjct: 10 RPMNRRETDLHTKCVVDVDANK--VILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVK 67
Query: 137 --------VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPL 188
V+K + ++ GYN +FAYGQTG+GK++TM G D P
Sbjct: 68 EKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT---------ADQP- 117
Query: 189 SGIVPRAMNHLFDELRLLGDAE--FTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
G++PR + LF+ + + E F V VS++EIYNE++ DLL P L+++++
Sbjct: 118 -GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREH 173
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 1 MNAHSSRSHTIFTITI-HIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAG 59
MN SSRSH +F IT+ H + G + GKL+LVDLAGSE ++GA R +E
Sbjct: 212 MNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGS 271
Query: 60 NINQSLLTLGRCITALVE------KTPHIPYR 85
NIN+SL TLG I+AL + K +PYR
Sbjct: 272 NINKSLTTLGLVISALADQSAGKNKNKFVPYR 303
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 15/152 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RP A V S + I N + + + FD + + S Q D+Y V P
Sbjct: 30 RPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQP 89
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
++ +L G N +V AYG TG GKT TM G G++PRA+ L R
Sbjct: 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQ-----------PGVIPRALMDLLQLTR 138
Query: 205 LLG----DAEFTVRVSFLEIYNEELIDLLSPT 232
G +V +S+LEIY E+++DLL P
Sbjct: 139 EEGAEGRPWALSVTMSYLEIYQEKVLDLLDPA 170
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
+N SSRSH + + + ++ + R GKL L+DLAGSE+ R+G + R +E+G
Sbjct: 218 LNQRSSRSHAVLLVKVDQRERLAPFRQ--REGKLYLIDLAGSEDNRRTGNKGLRLKESGA 275
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN SL LG+ + AL + P +PYR
Sbjct: 276 INTSLFVLGKVVDALNQGLPRVPYR 300
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 22/123 (17%)
Query: 120 KTFGFDRVF-------SQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172
K+F FD+ F + Q VY + +D GY+ +FAYGQTG+GK++TM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 173 GEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDA----EFTVRVSFLEIYNEELIDL 228
G D P G++PR LF + D + V+VS+ E+YNE + DL
Sbjct: 156 GTP---------DQP--GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDL 204
Query: 229 LSP 231
L+P
Sbjct: 205 LAP 207
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELL-RTGKLNLVDLAGSENIGRSGAQDKRAREAG 59
MN SSRSH +FTI + + L+ ++ R+ ++ LVDLAGSE + A +R RE
Sbjct: 261 MNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGS 320
Query: 60 NINQSLLTLGRCITALVE 77
NIN+SL TLGR I AL +
Sbjct: 321 NINKSLTTLGRVIAALAD 338
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVDVY 138
RPLN E A K ++ S + + E ++ ++K F FD F + + VY
Sbjct: 60 RPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVY 119
Query: 139 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 198
++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 120 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKA-----QNASKGIYAMASRD 174
Query: 199 LF-----DELRLLGDAEFTVRVSFLEIYNEELIDLLS 230
+F R LG V V+F EIYN +L DLL+
Sbjct: 175 VFLLKNQPCYRKLG---LEVYVTFFEIYNGKLFDLLN 208
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAR-EAGN 60
N++SSRSH F I + K GK +LVDLAG+E + + D++ R E
Sbjct: 258 NSNSSRSHACFQIILRAKGRM--------HGKFSLVDLAGNERGADTSSADRQTRMEGAE 309
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SLL L CI AL + H P+R
Sbjct: 310 INKSLLALKECIRALGQNKAHTPFR 334
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVDVY 138
RPLN E A K ++ S + + E ++ ++K F FD F + + VY
Sbjct: 8 RPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVY 67
Query: 139 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 198
++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 68 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS-----QNASKGIYAMASRD 122
Query: 199 LF---DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRL 240
+F ++ R + V V+F EIYN ++ DLL+ KLR+
Sbjct: 123 VFLLKNQPRYR-NLNLEVYVTFFEIYNGKVFDLLNKK---AKLRV 163
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAR-EAGN 60
N++SSRSH F I + K GK +LVDLAG+E + + D++ R E
Sbjct: 206 NSNSSRSHACFQILLRTKGR--------LHGKFSLVDLAGNERGADTSSADRQTRMEGAE 257
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SLL L CI AL + H P+R
Sbjct: 258 INKSLLALKECIRALGQNKAHTPFR 282
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVDVY 138
RPLN E A K ++ S + + E ++ ++K F FD F + + VY
Sbjct: 80 RPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVY 139
Query: 139 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 198
++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 140 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS-----QNASKGIYAMASRD 194
Query: 199 LF---DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRL 240
+F ++ R + V V+F EIYN ++ DLL+ KLR+
Sbjct: 195 VFLLKNQPR-YRNLNLEVYVTFFEIYNGKVFDLLNKK---AKLRV 235
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAR-EAGN 60
N++SSRSH F I + K GK +LVDLAG+E + + D++ R E
Sbjct: 278 NSNSSRSHACFQILLRTKGRL--------HGKFSLVDLAGNERGADTSSADRQTRMEGAE 329
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SLL L CI AL + H P+R
Sbjct: 330 INKSLLALKECIRALGQNKAHTPFR 354
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKI-------SKTFGFDRVFSQESKQVDV 137
RPLN E K ++ S + + E K+ ++TF FD F + V
Sbjct: 98 RPLNKKETQMKDLDVITIPSKDVVMVHE-PKQKVDLTRYLENQTFRFDYAFDDSAPNEMV 156
Query: 138 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 197
Y++ PL++ + T FAYGQTG+GKT TM G+ S D GI A
Sbjct: 157 YRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGK-----NQDCSKGIYALAAR 211
Query: 198 HLFDELRL--LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRL 240
+F L+ E V +F EIY+ ++ DLL+ TKLR+
Sbjct: 212 DVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRK---TKLRV 253
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAR-EAGN 60
NAHSSRSH +F I + K GK +L+DLAG+E + + D++ R E
Sbjct: 296 NAHSSRSHAVFQIILRRKGKL--------HGKFSLIDLAGNERGADTSSADRQTRLEGAE 347
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SLL L CI AL PH P+R
Sbjct: 348 INKSLLALKECIRALGRNKPHTPFR 372
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 16/131 (12%)
Query: 101 DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAY 160
+ ++ +TI +S F FD +F ++++ + L+ L GYN +FAY
Sbjct: 34 EAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAY 92
Query: 161 GQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGD--AEFTVRVSFL 218
GQTG+GKT+TM + G++P ++H+F L + + + ++
Sbjct: 93 GQTGSGKTYTML-------------NAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYI 139
Query: 219 EIYNEELIDLL 229
EIYNE ++DLL
Sbjct: 140 EIYNETILDLL 150
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 52/89 (58%), Gaps = 10/89 (11%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNI 61
N SSRSH++F + HI +L E + GKLNLVDLAGSE I S +R RE NI
Sbjct: 214 NERSSRSHSVFMV--HINGRNLHTGETSQ-GKLNLVDLAGSERINSSAVTGERLRETQNI 270
Query: 62 NQSLLTLGRCITALVEKTP-----HIPYR 85
N+SL LG I AL TP +IP+R
Sbjct: 271 NKSLSCLGDVIYAL--NTPDAGKRYIPFR 297
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVDVY 138
RPL+ +E+ K I+ ++ + I E R ++K F D+VF VY
Sbjct: 9 RPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVY 68
Query: 139 KYVVNPLI-DEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 197
+ + PLI D +G C+ FAYGQTG+GKT+TM G + S D P GI A
Sbjct: 69 ENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQS----DTP--GIFQYAAG 122
Query: 198 HLFDELRLL-GDAEFTVRVSFLEIYNEELIDLL 229
+F L + D + +SF EIY +L DLL
Sbjct: 123 DIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL 155
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 2 NAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAG-N 60
N SSRSH I I + D + GK+ +DLAGSE + +Q+K+ + G N
Sbjct: 206 NDESSRSHAILNIDLK------DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGAN 259
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SLL L CI A+ HIP+R
Sbjct: 260 INRSLLALKECIRAMDSDKNHIPFR 284
>pdb|3GMG|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein
From Mycobacterium Tuberculosis
pdb|3GMG|B Chain B, Crystal Structure Of An Uncharacterized Conserved Protein
From Mycobacterium Tuberculosis
Length = 170
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 20/75 (26%)
Query: 150 LSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-- 207
L+ + V A G TG G T+ DDP G+ P M + +ELR G
Sbjct: 21 LAALSILVGAVGATGPGVMITI-------------DDPGPGVAPEVMIDVINELRAAGAE 67
Query: 208 -----DAEFTVRVSF 217
DA +VRV
Sbjct: 68 AIQINDAHRSVRVGV 82
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 114 VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173
VND ++K+ FD + +D +N D ++ G + YG G G M+G
Sbjct: 242 VNDSVTKS-KFDNKYGTRHSLIDG----INRGTDALIGGKKVLICGYGDVGKGCAEAMKG 296
Query: 174 EKSNDPSISWQDDPLSGIVPRAMNHLFDELRL---LGDAEFTVRVS 216
+ + S++ + DP++ + +AM FD + + +GDA+ V +
Sbjct: 297 QGAR-VSVT-EIDPINAL--QAMMEGFDVVTVEEAIGDADIVVTAT 338
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 114 VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173
VND ++K+ FD + +D +N D ++ G + YG G G M+G
Sbjct: 241 VNDSVTKS-KFDNKYGTRHSLIDG----INRGTDALIGGKKVLICGYGDVGKGCAEAMKG 295
Query: 174 EKSNDPSISWQDDPLSGIVPRAMNHLFDELRL---LGDAEFTVRVS 216
+ + S++ + DP++ + +AM FD + + +GDA+ V +
Sbjct: 296 QGAR-VSVT-EIDPINAL--QAMMEGFDVVTVEEAIGDADIVVTAT 337
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQ------DDPLSGIVPR 194
VV ++ + S YN +F YG GTGKT ++ + ++ DD +V
Sbjct: 25 VVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH 83
Query: 195 AMNHLFDELR---------LLGDAEFT-----VRVSFLEIYN 222
+E R LL D +F ++ F I+N
Sbjct: 84 LKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFN 125
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQ------DDPLSGIVPR 194
VV ++ + S YN +F YG GTGKT ++ + ++ DD +V
Sbjct: 24 VVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH 82
Query: 195 AMNHLFDELR---------LLGDAEFT-----VRVSFLEIYN 222
+E R LL D +F ++ F I+N
Sbjct: 83 LKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFN 124
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 114 VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTG 166
VND ++K+ FD ++ VD K D +++G C V YG G G
Sbjct: 179 VNDSVTKS-KFDNLYGCRESLVDGIKRAT----DVMIAGKTCCVCGYGDVGKG 226
>pdb|2WZM|A Chain A, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZM|B Chain B, Crystal Structure Of A Mycobacterium Aldo-Keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|A Chain A, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
pdb|2WZT|B Chain B, Crystal Structure Of A Mycobacterium Aldo-keto Reductase
In Its Apo And Liganded Form
Length = 283
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 128 FSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGK 167
F+ Q++++ + + EV +GYN AYG G G+
Sbjct: 163 FTPAVNQIELHPLLNQAALREVNAGYNIVTEAYGPLGVGR 202
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum
pdb|3GYW|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From
Plasmodium Falciparum At 2.4 A Resolution
Length = 249
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 8 SHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGA----QDKRAREAGNINQ 63
S+++ T T H+K D E +L + ++D ++NI + +K +RE + Q
Sbjct: 127 SNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQ 186
Query: 64 SLLTLGRCITALVEKTPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERV 114
++ K P+ S A+ I++ +TIKER+
Sbjct: 187 TVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERI 237
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi
Length = 276
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 8 SHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGA----QDKRAREAGNINQ 63
S+++ T T H+K D E +L + ++D ++NI + +K +RE + Q
Sbjct: 137 SNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQ 196
Query: 64 SLLTLGRCITALVEKTPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERV 114
++ K P+ S A+ I++ +TIKER+
Sbjct: 197 TVNRDSFFHFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYEVALTIKERI 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,188,296
Number of Sequences: 62578
Number of extensions: 298012
Number of successful extensions: 969
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 132
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)