Query psy9445
Match_columns 243
No_of_seqs 281 out of 2064
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 19:31:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243|consensus 100.0 3.7E-40 8E-45 317.5 10.1 160 80-243 53-215 (1041)
2 cd01370 KISc_KIP3_like Kinesin 100.0 3.1E-38 6.7E-43 282.3 14.0 151 80-243 4-165 (338)
3 cd01368 KISc_KIF23_like Kinesi 100.0 2.1E-37 4.6E-42 277.5 14.2 149 79-243 4-166 (345)
4 KOG0245|consensus 100.0 2.9E-38 6.2E-43 300.7 8.7 155 79-243 7-170 (1221)
5 cd01373 KISc_KLP2_like Kinesin 100.0 8.5E-37 1.9E-41 272.9 14.3 156 79-243 4-164 (337)
6 KOG4280|consensus 100.0 6.5E-38 1.4E-42 290.0 6.5 153 80-243 9-165 (574)
7 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.6E-36 3.5E-41 273.1 14.6 153 79-243 4-170 (356)
8 KOG0242|consensus 100.0 6.9E-37 1.5E-41 292.0 12.6 151 80-243 10-163 (675)
9 cd01367 KISc_KIF2_like Kinesin 100.0 1.1E-36 2.4E-41 270.6 12.1 150 79-243 4-159 (322)
10 cd01364 KISc_BimC_Eg5 Kinesin 100.0 9.4E-36 2E-40 267.8 14.7 164 79-243 5-171 (352)
11 cd01374 KISc_CENP_E Kinesin mo 100.0 1.7E-35 3.7E-40 263.0 13.9 147 80-243 4-150 (321)
12 cd01376 KISc_KID_like Kinesin 100.0 3.6E-35 7.8E-40 260.7 14.5 150 80-243 4-156 (319)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 2.9E-35 6.4E-40 262.7 13.5 156 79-243 4-162 (333)
14 cd01369 KISc_KHC_KIF5 Kinesin 100.0 7.3E-35 1.6E-39 259.4 13.3 152 79-243 5-157 (325)
15 KOG0241|consensus 100.0 1.9E-35 4.2E-40 278.6 9.4 154 79-243 7-174 (1714)
16 KOG0240|consensus 100.0 1.9E-35 4.1E-40 268.5 9.0 152 79-243 10-163 (607)
17 cd01375 KISc_KIF9_like Kinesin 100.0 1.8E-34 3.9E-39 257.7 13.8 151 80-243 4-166 (334)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 3.8E-34 8.2E-39 256.3 13.4 153 80-243 5-160 (341)
19 PLN03188 kinesin-12 family pro 100.0 2.6E-34 5.6E-39 280.1 13.0 152 79-243 101-258 (1320)
20 KOG0239|consensus 100.0 2.8E-34 6.1E-39 273.3 8.5 163 69-243 303-473 (670)
21 PF00225 Kinesin: Kinesin moto 100.0 7.7E-34 1.7E-38 253.6 10.1 152 83-243 1-160 (335)
22 cd00106 KISc Kinesin motor dom 100.0 7.4E-33 1.6E-37 246.6 15.0 152 80-243 4-159 (328)
23 cd01366 KISc_C_terminal Kinesi 100.0 9.7E-33 2.1E-37 246.1 15.0 150 79-243 5-159 (329)
24 smart00129 KISc Kinesin motor, 100.0 1.9E-32 4E-37 244.8 15.6 151 80-243 4-157 (335)
25 KOG0246|consensus 100.0 1.2E-29 2.6E-34 230.5 11.6 156 80-243 212-375 (676)
26 KOG0243|consensus 99.9 7.6E-28 1.6E-32 232.7 3.0 95 1-95 259-353 (1041)
27 COG5059 KIP1 Kinesin-like prot 99.9 1.4E-26 3E-31 219.0 6.3 106 119-235 55-161 (568)
28 KOG0247|consensus 99.9 7.4E-26 1.6E-30 210.9 6.6 141 79-233 34-248 (809)
29 KOG0244|consensus 99.9 1.6E-25 3.5E-30 213.7 6.8 146 84-242 1-147 (913)
30 KOG4280|consensus 99.9 2.8E-25 6E-30 206.2 6.0 94 1-94 204-298 (574)
31 KOG0240|consensus 99.9 1.7E-23 3.8E-28 190.8 6.9 91 1-94 202-293 (607)
32 KOG0245|consensus 99.9 6.1E-23 1.3E-27 196.6 3.5 92 1-92 209-308 (1221)
33 KOG0247|consensus 99.8 7.1E-22 1.5E-26 184.5 5.7 91 1-92 301-396 (809)
34 cd01363 Motor_domain Myosin an 99.8 1.9E-21 4.1E-26 160.2 6.9 96 1-96 76-171 (186)
35 cd01373 KISc_KLP2_like Kinesin 99.8 4.3E-21 9.3E-26 171.7 8.2 95 1-96 203-301 (337)
36 KOG0239|consensus 99.8 2.2E-21 4.8E-26 185.3 6.0 93 1-96 512-604 (670)
37 cd01370 KISc_KIP3_like Kinesin 99.8 6.2E-21 1.4E-25 170.7 7.6 96 1-96 204-302 (338)
38 cd01368 KISc_KIF23_like Kinesi 99.8 1.3E-20 2.8E-25 169.1 8.3 96 1-96 205-311 (345)
39 PLN03188 kinesin-12 family pro 99.8 1.1E-20 2.5E-25 185.3 7.9 94 1-94 297-396 (1320)
40 KOG0242|consensus 99.8 3.4E-21 7.3E-26 184.6 3.0 91 1-95 202-294 (675)
41 cd01364 KISc_BimC_Eg5 Kinesin 99.8 9.1E-20 2E-24 164.1 8.2 96 1-96 212-307 (352)
42 cd01371 KISc_KIF3 Kinesin moto 99.8 1.9E-19 4.1E-24 160.9 8.5 95 1-95 201-296 (333)
43 KOG0246|consensus 99.8 1.3E-19 2.7E-24 165.5 6.1 90 1-96 414-504 (676)
44 cd01375 KISc_KIF9_like Kinesin 99.8 4.9E-19 1.1E-23 158.3 8.4 95 1-96 205-300 (334)
45 cd01376 KISc_KID_like Kinesin 99.8 5.3E-19 1.2E-23 157.2 7.9 91 1-96 195-285 (319)
46 cd01367 KISc_KIF2_like Kinesin 99.8 6.6E-19 1.4E-23 156.7 7.8 90 1-96 198-288 (322)
47 cd01365 KISc_KIF1A_KIF1B Kines 99.8 1.2E-18 2.7E-23 157.0 8.0 96 1-96 209-313 (356)
48 cd01374 KISc_CENP_E Kinesin mo 99.8 1.1E-18 2.4E-23 155.3 7.5 95 1-96 189-285 (321)
49 cd01369 KISc_KHC_KIF5 Kinesin 99.8 1.7E-18 3.6E-23 154.3 8.3 93 1-96 196-289 (325)
50 cd01372 KISc_KIF4 Kinesin moto 99.7 2.6E-18 5.7E-23 154.0 8.5 96 1-96 199-304 (341)
51 COG5059 KIP1 Kinesin-like prot 99.7 7.6E-19 1.6E-23 166.5 2.6 184 1-205 206-420 (568)
52 cd01366 KISc_C_terminal Kinesi 99.7 8E-18 1.7E-22 150.2 8.1 93 1-96 198-290 (329)
53 PF00225 Kinesin: Kinesin moto 99.7 2.6E-17 5.6E-22 147.1 8.0 96 1-96 200-299 (335)
54 cd00106 KISc Kinesin motor dom 99.7 1.7E-16 3.6E-21 141.5 8.5 94 1-95 198-293 (328)
55 smart00129 KISc Kinesin motor, 99.7 2.1E-16 4.5E-21 141.4 8.7 95 1-96 196-292 (335)
56 KOG0241|consensus 99.7 8.5E-17 1.8E-21 153.4 5.6 93 1-93 213-312 (1714)
57 KOG0244|consensus 99.7 1.6E-18 3.5E-23 166.1 -6.3 90 1-92 186-277 (913)
58 cd01363 Motor_domain Myosin an 99.5 4.8E-15 1E-19 122.0 5.2 57 137-205 8-64 (186)
59 COG0556 UvrB Helicase subunit 95.5 0.024 5.1E-07 53.4 5.4 93 121-226 4-101 (663)
60 COG2805 PilT Tfp pilus assembl 94.3 0.021 4.6E-07 50.3 1.6 31 142-172 113-143 (353)
61 PF00308 Bac_DnaA: Bacterial d 93.6 0.033 7.2E-07 46.9 1.3 50 121-173 4-53 (219)
62 PRK06893 DNA replication initi 92.4 0.074 1.6E-06 45.0 1.8 47 121-173 12-58 (229)
63 COG2804 PulE Type II secretory 91.7 0.077 1.7E-06 49.8 1.2 29 145-173 249-277 (500)
64 TIGR02928 orc1/cdc6 family rep 89.8 0.14 3.1E-06 45.9 1.1 28 145-172 30-58 (365)
65 PRK00411 cdc6 cell division co 88.8 0.19 4.1E-06 45.7 1.2 28 145-172 45-73 (394)
66 PRK06526 transposase; Provisio 88.7 0.26 5.7E-06 42.5 1.9 18 156-173 100-117 (254)
67 cd00009 AAA The AAA+ (ATPases 88.3 0.2 4.4E-06 37.5 0.9 25 148-172 13-37 (151)
68 PRK12377 putative replication 88.2 0.3 6.4E-06 42.1 1.9 50 122-173 71-120 (248)
69 PRK09087 hypothetical protein; 88.1 0.3 6.5E-06 41.3 1.8 48 120-173 16-63 (226)
70 PRK14086 dnaA chromosomal repl 87.9 0.21 4.5E-06 48.4 0.8 51 120-173 283-333 (617)
71 PRK05642 DNA replication initi 87.6 0.3 6.5E-06 41.5 1.6 19 155-173 46-64 (234)
72 PRK08116 hypothetical protein; 87.6 0.22 4.7E-06 43.3 0.7 51 121-173 81-133 (268)
73 PF13245 AAA_19: Part of AAA d 87.5 0.25 5.4E-06 34.4 0.8 27 146-173 3-29 (76)
74 PF01935 DUF87: Domain of unkn 87.1 0.2 4.3E-06 42.0 0.2 16 156-171 25-40 (229)
75 PRK00149 dnaA chromosomal repl 86.9 0.22 4.8E-06 46.4 0.4 52 119-173 116-167 (450)
76 PRK14088 dnaA chromosomal repl 86.9 0.18 3.9E-06 47.0 -0.2 50 120-173 100-149 (440)
77 COG1474 CDC6 Cdc6-related prot 86.8 0.27 5.9E-06 44.7 0.9 27 146-172 33-60 (366)
78 COG5008 PilU Tfp pilus assembl 86.7 0.45 9.8E-06 41.5 2.1 30 142-171 115-144 (375)
79 PRK08084 DNA replication initi 86.6 0.46 1E-05 40.3 2.2 47 121-173 18-64 (235)
80 PRK10436 hypothetical protein; 86.4 0.28 6.1E-06 46.0 0.8 27 146-172 210-236 (462)
81 cd00046 DEXDc DEAD-like helica 86.4 0.24 5.1E-06 36.7 0.3 18 157-174 3-20 (144)
82 TIGR00362 DnaA chromosomal rep 86.2 0.26 5.6E-06 45.2 0.4 52 119-173 104-155 (405)
83 PF13401 AAA_22: AAA domain; P 86.1 0.22 4.7E-06 37.5 -0.1 18 154-171 4-21 (131)
84 PF04851 ResIII: Type III rest 86.1 0.28 6E-06 38.8 0.5 20 154-173 25-44 (184)
85 TIGR02538 type_IV_pilB type IV 85.5 0.47 1E-05 45.7 1.9 29 145-173 307-335 (564)
86 PRK08181 transposase; Validate 85.3 0.51 1.1E-05 41.1 1.8 18 157-174 109-126 (269)
87 TIGR02533 type_II_gspE general 85.2 0.41 9E-06 45.2 1.3 28 146-173 234-261 (486)
88 PRK06620 hypothetical protein; 85.1 0.41 9E-06 40.1 1.1 50 120-173 11-63 (214)
89 PRK07952 DNA replication prote 84.9 0.57 1.2E-05 40.2 1.9 50 122-173 69-118 (244)
90 KOG0989|consensus 84.8 0.46 9.9E-06 42.1 1.3 24 148-171 51-74 (346)
91 TIGR00631 uvrb excinuclease AB 84.8 0.97 2.1E-05 44.4 3.7 88 125-225 5-97 (655)
92 smart00382 AAA ATPases associa 84.8 0.32 6.9E-06 35.9 0.3 19 155-173 3-21 (148)
93 PF12846 AAA_10: AAA-like doma 84.7 0.31 6.8E-06 41.9 0.2 19 154-172 1-19 (304)
94 PRK08727 hypothetical protein; 84.5 0.41 8.9E-06 40.6 0.8 19 155-173 42-60 (233)
95 TIGR01420 pilT_fam pilus retra 84.4 0.46 9.9E-06 42.8 1.1 30 144-173 112-141 (343)
96 TIGR02524 dot_icm_DotB Dot/Icm 84.1 0.51 1.1E-05 42.9 1.3 25 149-173 129-153 (358)
97 cd01131 PilT Pilus retraction 83.8 0.38 8.2E-06 39.7 0.3 18 155-172 2-19 (198)
98 PF01695 IstB_IS21: IstB-like 83.3 0.61 1.3E-05 37.9 1.4 19 155-173 48-66 (178)
99 PF00437 T2SE: Type II/IV secr 83.3 0.41 8.9E-06 41.2 0.4 18 154-171 127-144 (270)
100 cd01129 PulE-GspE PulE/GspE Th 82.8 0.62 1.3E-05 40.4 1.3 27 146-172 72-98 (264)
101 PF13479 AAA_24: AAA domain 82.6 0.52 1.1E-05 39.3 0.7 21 154-174 3-23 (213)
102 PRK09183 transposase/IS protei 82.3 0.76 1.7E-05 39.7 1.6 18 156-173 104-121 (259)
103 COG1484 DnaC DNA replication p 82.2 0.69 1.5E-05 39.9 1.4 38 133-173 87-124 (254)
104 TIGR02525 plasmid_TraJ plasmid 82.2 0.63 1.4E-05 42.5 1.1 27 145-172 141-167 (372)
105 PF13604 AAA_30: AAA domain; P 82.0 0.62 1.3E-05 38.4 0.9 28 145-172 9-36 (196)
106 PF00270 DEAD: DEAD/DEAH box h 81.6 0.95 2.1E-05 35.4 1.9 27 145-173 7-33 (169)
107 TIGR03420 DnaA_homol_Hda DnaA 81.5 0.84 1.8E-05 37.9 1.6 23 151-173 35-57 (226)
108 PRK08939 primosomal protein Dn 81.3 0.71 1.5E-05 40.9 1.1 41 133-174 135-176 (306)
109 PF00448 SRP54: SRP54-type pro 81.2 0.52 1.1E-05 39.0 0.2 17 156-172 3-19 (196)
110 PRK06835 DNA replication prote 81.2 0.81 1.7E-05 41.1 1.4 29 144-173 174-202 (329)
111 PF00004 AAA: ATPase family as 81.1 0.68 1.5E-05 34.5 0.8 50 157-206 1-56 (132)
112 PF05970 PIF1: PIF1-like helic 80.0 0.88 1.9E-05 41.3 1.3 37 131-171 3-39 (364)
113 PF13207 AAA_17: AAA domain; P 79.7 0.88 1.9E-05 33.7 1.0 16 156-171 1-16 (121)
114 PTZ00112 origin recognition co 79.3 0.97 2.1E-05 45.8 1.4 27 145-171 770-798 (1164)
115 PF13191 AAA_16: AAA ATPase do 78.9 0.49 1.1E-05 37.7 -0.7 23 150-172 20-42 (185)
116 PF01637 Arch_ATPase: Archaeal 78.7 0.57 1.2E-05 38.5 -0.3 28 145-172 11-38 (234)
117 PF13086 AAA_11: AAA domain; P 78.7 0.89 1.9E-05 37.3 0.8 18 156-173 19-36 (236)
118 PRK14087 dnaA chromosomal repl 78.6 0.69 1.5E-05 43.3 0.1 50 121-173 111-160 (450)
119 TIGR03015 pepcterm_ATPase puta 78.6 1.1 2.5E-05 38.1 1.5 23 150-172 39-61 (269)
120 PF00910 RNA_helicase: RNA hel 78.4 0.57 1.2E-05 34.6 -0.4 16 157-172 1-16 (107)
121 PF02562 PhoH: PhoH-like prote 77.7 1.4 2.9E-05 36.9 1.6 21 153-173 18-38 (205)
122 PRK13894 conjugal transfer ATP 77.3 1.1 2.5E-05 39.9 1.2 28 144-172 139-166 (319)
123 TIGR02782 TrbB_P P-type conjug 76.8 0.97 2.1E-05 40.0 0.6 28 144-172 123-150 (299)
124 PF13671 AAA_33: AAA domain; P 76.6 1.1 2.4E-05 34.1 0.8 17 157-173 2-18 (143)
125 PF00580 UvrD-helicase: UvrD/R 76.5 0.97 2.1E-05 39.1 0.5 21 153-173 12-32 (315)
126 PHA00729 NTP-binding motif con 76.4 1.7 3.8E-05 36.8 2.0 30 144-173 7-36 (226)
127 PRK08903 DnaA regulatory inact 76.1 1.8 3.9E-05 36.1 2.0 22 152-173 40-61 (227)
128 PF01580 FtsK_SpoIIIE: FtsK/Sp 76.0 0.82 1.8E-05 37.6 -0.1 17 156-172 40-56 (205)
129 PRK12402 replication factor C 75.9 1.2 2.5E-05 39.4 0.9 21 151-171 33-53 (337)
130 PRK06921 hypothetical protein; 75.6 1.3 2.8E-05 38.5 1.0 21 154-174 117-137 (266)
131 COG0593 DnaA ATPase involved i 75.3 0.96 2.1E-05 41.7 0.1 52 119-173 81-132 (408)
132 COG1223 Predicted ATPase (AAA+ 75.1 1.1 2.5E-05 39.0 0.5 51 154-205 151-208 (368)
133 PF07693 KAP_NTPase: KAP famil 74.0 1.2 2.7E-05 39.1 0.5 54 152-205 18-82 (325)
134 PF07728 AAA_5: AAA domain (dy 73.9 1.4 3.1E-05 33.6 0.8 15 157-171 2-16 (139)
135 PF07724 AAA_2: AAA domain (Cd 73.7 1.4 3.1E-05 35.5 0.7 17 155-171 4-20 (171)
136 PF06309 Torsin: Torsin; Inte 73.6 1.3 2.8E-05 34.2 0.4 17 155-171 53-70 (127)
137 PF13238 AAA_18: AAA domain; P 73.3 1.5 3.3E-05 32.4 0.8 15 157-171 1-15 (129)
138 PHA02544 44 clamp loader, smal 73.2 1.6 3.5E-05 38.3 1.0 23 151-173 39-62 (316)
139 PF05496 RuvB_N: Holliday junc 73.1 2.4 5.2E-05 36.0 2.0 41 128-169 23-65 (233)
140 TIGR02881 spore_V_K stage V sp 72.5 1.4 3E-05 37.9 0.4 18 154-171 42-59 (261)
141 PRK13833 conjugal transfer pro 72.3 1.7 3.7E-05 38.9 1.0 28 144-172 135-162 (323)
142 cd01130 VirB11-like_ATPase Typ 72.1 1.9 4.1E-05 35.0 1.1 28 144-172 16-43 (186)
143 TIGR03499 FlhF flagellar biosy 71.5 1.5 3.2E-05 38.4 0.4 18 156-173 196-213 (282)
144 PRK12723 flagellar biosynthesi 71.3 1.4 3.1E-05 40.4 0.3 19 154-172 174-192 (388)
145 PF06414 Zeta_toxin: Zeta toxi 71.3 1.5 3.3E-05 35.9 0.4 20 153-172 14-33 (199)
146 smart00487 DEXDc DEAD-like hel 71.1 2.2 4.7E-05 33.5 1.3 27 146-173 17-43 (201)
147 PF00063 Myosin_head: Myosin h 71.0 1.7 3.8E-05 42.8 0.8 21 151-171 82-102 (689)
148 PRK13851 type IV secretion sys 70.7 1.5 3.2E-05 39.6 0.2 28 145-173 154-181 (344)
149 PRK06547 hypothetical protein; 70.1 3.2 6.9E-05 33.5 2.0 26 146-171 7-32 (172)
150 PLN03025 replication factor C 69.2 2.3 5.1E-05 37.6 1.2 22 152-173 32-53 (319)
151 KOG2543|consensus 68.6 1.7 3.7E-05 39.7 0.2 19 155-173 31-49 (438)
152 PRK13764 ATPase; Provisional 68.5 2.3 5E-05 41.3 1.0 20 154-173 257-276 (602)
153 PRK10536 hypothetical protein; 68.4 2.3 4.9E-05 36.9 0.9 17 155-171 75-91 (262)
154 PLN00020 ribulose bisphosphate 67.8 2.8 6E-05 38.4 1.3 84 120-205 110-205 (413)
155 PRK11776 ATP-dependent RNA hel 67.8 3.5 7.7E-05 38.4 2.1 24 145-170 34-57 (460)
156 PF03215 Rad17: Rad17 cell cyc 67.5 2.5 5.5E-05 40.3 1.0 29 143-171 32-62 (519)
157 cd00268 DEADc DEAD-box helicas 67.4 3.1 6.7E-05 33.7 1.5 25 145-171 29-53 (203)
158 PRK14722 flhF flagellar biosyn 67.1 2.1 4.5E-05 39.1 0.4 19 154-172 137-155 (374)
159 COG4962 CpaF Flp pilus assembl 67.0 2.4 5.3E-05 38.2 0.8 24 148-172 168-191 (355)
160 PF00735 Septin: Septin; Inte 66.5 2.6 5.6E-05 36.9 0.9 21 151-171 1-21 (281)
161 PRK13342 recombination factor 66.4 3.7 8E-05 37.9 1.9 25 148-172 30-54 (413)
162 TIGR01242 26Sp45 26S proteasom 65.9 2.2 4.8E-05 38.6 0.3 19 154-172 156-174 (364)
163 PRK13900 type IV secretion sys 65.7 2 4.4E-05 38.5 0.0 27 145-172 152-178 (332)
164 PRK04837 ATP-dependent RNA hel 64.8 3.3 7.1E-05 38.1 1.2 25 145-171 38-62 (423)
165 TIGR00635 ruvB Holliday juncti 64.7 2.7 5.9E-05 36.6 0.7 18 155-172 31-48 (305)
166 PF13555 AAA_29: P-loop contai 64.6 2.5 5.3E-05 28.3 0.3 15 157-171 26-40 (62)
167 COG1419 FlhF Flagellar GTP-bin 64.5 2.9 6.3E-05 38.5 0.8 18 154-171 203-220 (407)
168 PF02456 Adeno_IVa2: Adenoviru 64.5 3 6.6E-05 37.2 0.9 75 157-232 90-186 (369)
169 PRK04328 hypothetical protein; 64.5 5.3 0.00011 34.2 2.4 26 144-169 10-38 (249)
170 PF12775 AAA_7: P-loop contain 64.5 3.4 7.3E-05 36.0 1.2 28 145-173 25-52 (272)
171 CHL00081 chlI Mg-protoporyphyr 64.4 1.7 3.8E-05 39.3 -0.7 46 120-173 12-57 (350)
172 PF05729 NACHT: NACHT domain 64.3 2.7 5.9E-05 32.5 0.5 18 156-173 2-19 (166)
173 COG2256 MGS1 ATPase related to 64.2 4.7 0.0001 37.1 2.1 41 129-170 24-64 (436)
174 COG1222 RPT1 ATP-dependent 26S 64.2 3.2 7E-05 37.7 1.0 36 134-169 160-200 (406)
175 KOG3859|consensus 64.2 3.7 8.1E-05 36.1 1.4 29 143-171 30-59 (406)
176 PTZ00424 helicase 45; Provisio 63.8 4.5 9.8E-05 36.6 2.0 26 144-171 57-82 (401)
177 smart00242 MYSc Myosin. Large 63.4 3.9 8.5E-05 40.3 1.5 21 151-171 89-109 (677)
178 cd01850 CDC_Septin CDC/Septin. 63.0 3.3 7.1E-05 36.1 0.8 21 151-171 1-21 (276)
179 TIGR01618 phage_P_loop phage n 62.8 3.3 7.3E-05 34.9 0.8 21 154-174 12-32 (220)
180 PRK12422 chromosomal replicati 62.7 3.3 7.1E-05 38.7 0.8 52 119-173 105-160 (445)
181 COG1219 ClpX ATP-dependent pro 62.5 3.5 7.7E-05 37.0 0.9 15 155-169 98-112 (408)
182 cd01120 RecA-like_NTPases RecA 62.3 3.5 7.6E-05 31.5 0.8 15 157-171 2-16 (165)
183 PF05673 DUF815: Protein of un 61.7 4 8.6E-05 35.1 1.1 28 146-173 43-71 (249)
184 PRK00440 rfc replication facto 61.6 3.6 7.7E-05 35.9 0.8 21 151-171 35-55 (319)
185 PRK11192 ATP-dependent RNA hel 61.6 5.3 0.00012 36.8 2.0 24 145-170 31-54 (434)
186 cd01383 MYSc_type_VIII Myosin 61.6 5 0.00011 39.6 1.9 21 151-171 89-109 (677)
187 PF10236 DAP3: Mitochondrial r 61.6 3.5 7.5E-05 36.6 0.8 24 150-173 19-42 (309)
188 cd02021 GntK Gluconate kinase 61.5 3.7 8E-05 31.7 0.8 15 157-171 2-16 (150)
189 TIGR01359 UMP_CMP_kin_fam UMP- 61.5 3.8 8.2E-05 32.8 0.9 14 157-170 2-15 (183)
190 cd01384 MYSc_type_XI Myosin mo 61.2 4.8 0.0001 39.7 1.7 21 151-171 85-105 (674)
191 cd01123 Rad51_DMC1_radA Rad51_ 61.1 6.4 0.00014 32.8 2.3 28 144-171 6-36 (235)
192 PRK00131 aroK shikimate kinase 61.0 4.2 9.2E-05 31.9 1.1 17 155-171 5-21 (175)
193 PF06048 DUF927: Domain of unk 61.0 3.7 8E-05 35.9 0.8 29 142-171 182-210 (286)
194 PRK07261 topology modulation p 60.8 3.9 8.5E-05 32.8 0.9 15 157-171 3-17 (171)
195 PRK10590 ATP-dependent RNA hel 60.7 5.9 0.00013 36.9 2.2 25 145-171 31-55 (456)
196 COG1125 OpuBA ABC-type proline 60.6 3.1 6.8E-05 36.2 0.3 13 160-172 33-45 (309)
197 PRK11331 5-methylcytosine-spec 60.6 4.6 0.0001 37.8 1.4 27 143-171 185-211 (459)
198 cd00124 MYSc Myosin motor doma 60.6 4.7 0.0001 39.8 1.5 21 151-171 83-103 (679)
199 cd01126 TraG_VirD4 The TraG/Tr 60.4 5.5 0.00012 36.2 1.9 16 157-172 2-17 (384)
200 PRK03992 proteasome-activating 60.2 4 8.8E-05 37.4 0.9 18 154-171 165-182 (389)
201 cd01377 MYSc_type_II Myosin mo 60.1 4.8 0.0001 39.9 1.5 21 151-171 88-108 (693)
202 cd01381 MYSc_type_VII Myosin m 60.1 5.4 0.00012 39.3 1.9 21 151-171 83-103 (671)
203 cd01385 MYSc_type_IX Myosin mo 59.7 5.1 0.00011 39.7 1.6 21 151-171 91-111 (692)
204 PRK08118 topology modulation p 59.7 4.2 9.2E-05 32.5 0.9 14 157-170 4-17 (167)
205 PF06745 KaiC: KaiC; InterPro 59.4 7.3 0.00016 32.4 2.3 28 144-171 6-36 (226)
206 cd01378 MYSc_type_I Myosin mot 59.3 5.5 0.00012 39.3 1.8 21 151-171 83-103 (674)
207 KOG1803|consensus 59.2 3.8 8.3E-05 39.5 0.6 17 156-172 203-219 (649)
208 CHL00181 cbbX CbbX; Provisiona 59.1 4.2 9.1E-05 35.7 0.8 15 157-171 62-76 (287)
209 PRK00080 ruvB Holliday junctio 59.1 4 8.7E-05 36.3 0.7 17 155-171 52-68 (328)
210 PF13476 AAA_23: AAA domain; P 59.0 3.7 8.1E-05 32.8 0.5 17 155-171 20-36 (202)
211 cd01382 MYSc_type_VI Myosin mo 59.0 5 0.00011 39.9 1.4 21 151-171 88-108 (717)
212 PF12774 AAA_6: Hydrolytic ATP 58.9 4.4 9.6E-05 34.4 0.9 18 156-173 34-51 (231)
213 TIGR00376 DNA helicase, putati 58.8 4.8 0.0001 39.4 1.2 18 156-173 175-192 (637)
214 PRK05703 flhF flagellar biosyn 58.2 3.8 8.2E-05 38.1 0.4 18 156-173 223-240 (424)
215 TIGR02903 spore_lon_C ATP-depe 58.2 5.6 0.00012 38.8 1.6 27 145-171 166-192 (615)
216 KOG0953|consensus 58.1 13 0.00028 35.8 3.9 45 156-205 193-237 (700)
217 PRK04195 replication factor C 58.0 4.8 0.0001 38.0 1.0 28 144-171 28-56 (482)
218 cd01380 MYSc_type_V Myosin mot 58.0 5.5 0.00012 39.4 1.5 21 151-171 83-103 (691)
219 TIGR02237 recomb_radB DNA repa 57.7 7 0.00015 32.0 1.9 18 154-171 12-29 (209)
220 PHA02653 RNA helicase NPH-II; 57.7 7.6 0.00016 38.4 2.4 24 145-170 172-195 (675)
221 KOG0739|consensus 57.4 4.9 0.00011 35.9 0.9 83 125-207 133-225 (439)
222 cd00464 SK Shikimate kinase (S 57.4 4.7 0.0001 31.0 0.7 16 156-171 1-16 (154)
223 PRK11634 ATP-dependent RNA hel 57.4 7 0.00015 38.3 2.1 25 145-171 36-60 (629)
224 cd01387 MYSc_type_XV Myosin mo 57.1 6.5 0.00014 38.8 1.9 21 151-171 84-104 (677)
225 PRK06995 flhF flagellar biosyn 56.9 4 8.6E-05 38.6 0.3 18 155-172 257-274 (484)
226 PF04548 AIG1: AIG1 family; I 56.8 4.8 0.0001 33.4 0.8 21 155-175 1-24 (212)
227 cd01428 ADK Adenylate kinase ( 56.8 5 0.00011 32.2 0.9 15 157-171 2-16 (194)
228 PTZ00454 26S protease regulato 56.5 5.3 0.00011 36.8 1.1 18 154-171 179-196 (398)
229 TIGR02880 cbbX_cfxQ probable R 56.3 5 0.00011 35.1 0.8 16 156-171 60-75 (284)
230 TIGR02640 gas_vesic_GvpN gas v 56.0 7.3 0.00016 33.5 1.8 26 144-171 13-38 (262)
231 cd01124 KaiC KaiC is a circadi 55.9 5.6 0.00012 31.7 1.0 15 157-171 2-16 (187)
232 smart00763 AAA_PrkA PrkA AAA d 55.8 24 0.00051 32.2 5.0 17 153-169 77-93 (361)
233 PHA01747 putative ATP-dependen 55.7 5.3 0.00011 36.6 0.9 32 142-173 178-209 (425)
234 cd00820 PEPCK_HprK Phosphoenol 55.6 4.7 0.0001 30.1 0.5 16 156-171 17-32 (107)
235 COG5019 CDC3 Septin family pro 55.6 7.7 0.00017 35.2 1.9 21 150-170 19-39 (373)
236 PF13173 AAA_14: AAA domain 55.5 4.4 9.6E-05 30.6 0.3 17 156-172 4-20 (128)
237 KOG0926|consensus 55.5 6.9 0.00015 39.2 1.7 19 153-171 270-288 (1172)
238 PRK06217 hypothetical protein; 55.3 5.4 0.00012 32.1 0.8 14 157-170 4-17 (183)
239 PF14532 Sigma54_activ_2: Sigm 55.2 5.7 0.00012 30.4 0.9 21 151-171 18-38 (138)
240 cd01127 TrwB Bacterial conjuga 55.2 4.2 9.1E-05 37.5 0.2 18 154-171 42-59 (410)
241 TIGR01313 therm_gnt_kin carboh 55.2 4.5 9.7E-05 31.7 0.3 13 158-170 2-14 (163)
242 PTZ00361 26 proteosome regulat 54.8 4.2 9E-05 38.0 0.1 17 155-171 218-234 (438)
243 TIGR00348 hsdR type I site-spe 54.6 6.4 0.00014 38.8 1.4 31 142-173 247-282 (667)
244 TIGR01241 FtsH_fam ATP-depende 54.6 5.5 0.00012 37.6 0.9 18 155-172 89-106 (495)
245 TIGR03744 traC_PFL_4706 conjug 54.5 4.2 9.2E-05 41.4 0.1 19 153-171 474-492 (893)
246 TIGR00614 recQ_fam ATP-depende 54.5 9.1 0.0002 35.9 2.3 26 144-171 18-43 (470)
247 PF08477 Miro: Miro-like prote 54.5 6.5 0.00014 28.7 1.1 16 157-172 2-17 (119)
248 cd02020 CMPK Cytidine monophos 54.5 5.9 0.00013 30.1 0.9 15 157-171 2-16 (147)
249 COG3829 RocR Transcriptional r 54.4 6.2 0.00014 37.7 1.2 19 149-167 263-281 (560)
250 PRK11448 hsdR type I restricti 54.3 4.5 9.8E-05 42.2 0.3 30 143-173 423-452 (1123)
251 TIGR02746 TraC-F-type type-IV 54.3 4.3 9.4E-05 40.6 0.1 18 154-171 430-447 (797)
252 KOG2373|consensus 54.0 11 0.00024 34.3 2.6 30 143-173 260-292 (514)
253 KOG0652|consensus 54.0 6.4 0.00014 34.5 1.1 15 155-169 206-220 (424)
254 PRK08233 hypothetical protein; 53.7 6 0.00013 31.3 0.8 15 157-171 6-20 (182)
255 PHA02244 ATPase-like protein 53.7 8.4 0.00018 35.3 1.8 20 150-171 117-136 (383)
256 PRK14531 adenylate kinase; Pro 53.7 6.1 0.00013 31.9 0.9 15 156-170 4-18 (183)
257 PF00158 Sigma54_activat: Sigm 53.1 7.9 0.00017 31.1 1.4 21 150-170 18-38 (168)
258 PRK13341 recombination factor 53.1 7.7 0.00017 38.6 1.6 23 151-173 49-71 (725)
259 KOG0340|consensus 53.1 12 0.00027 34.0 2.8 29 144-174 36-64 (442)
260 CHL00195 ycf46 Ycf46; Provisio 52.9 5.2 0.00011 37.9 0.4 18 154-171 259-276 (489)
261 PRK01297 ATP-dependent RNA hel 52.6 8.5 0.00018 36.0 1.8 26 144-171 116-141 (475)
262 KOG0729|consensus 52.5 7.7 0.00017 34.1 1.3 20 152-171 207-228 (435)
263 KOG1547|consensus 51.9 11 0.00023 32.7 2.1 22 149-170 41-62 (336)
264 PRK09361 radB DNA repair and r 51.8 13 0.00028 30.9 2.6 30 143-172 9-41 (225)
265 TIGR01360 aden_kin_iso1 adenyl 51.7 7 0.00015 31.1 0.9 16 156-171 5-20 (188)
266 PF02534 T4SS-DNA_transf: Type 51.5 12 0.00026 34.8 2.6 18 155-172 45-62 (469)
267 PRK04040 adenylate kinase; Pro 51.5 7 0.00015 32.0 0.9 17 156-172 4-20 (188)
268 TIGR02322 phosphon_PhnN phosph 51.4 5.6 0.00012 31.7 0.3 16 156-171 3-18 (179)
269 COG1201 Lhr Lhr-like helicases 50.9 11 0.00023 38.1 2.2 25 145-171 30-54 (814)
270 KOG0335|consensus 50.7 7.6 0.00016 36.5 1.1 25 148-174 107-131 (482)
271 cd01983 Fer4_NifH The Fer4_Nif 50.7 6.3 0.00014 27.1 0.5 16 157-172 2-17 (99)
272 PLN00206 DEAD-box ATP-dependen 50.6 12 0.00027 35.5 2.6 24 145-170 151-174 (518)
273 TIGR00064 ftsY signal recognit 50.5 5.7 0.00012 34.6 0.3 18 155-172 73-90 (272)
274 PRK04537 ATP-dependent RNA hel 50.5 11 0.00023 36.5 2.1 25 145-171 39-63 (572)
275 TIGR01817 nifA Nif-specific re 50.5 7 0.00015 37.3 0.8 45 121-171 192-236 (534)
276 TIGR02902 spore_lonB ATP-depen 50.5 9.1 0.0002 36.6 1.6 25 147-171 79-103 (531)
277 TIGR03689 pup_AAA proteasome A 50.3 6.9 0.00015 37.3 0.8 17 155-171 217-233 (512)
278 PRK14532 adenylate kinase; Pro 50.3 8.2 0.00018 31.0 1.1 15 156-170 2-16 (188)
279 TIGR03877 thermo_KaiC_1 KaiC d 50.2 14 0.00029 31.2 2.5 25 145-169 9-36 (237)
280 TIGR03819 heli_sec_ATPase heli 50.0 7 0.00015 35.2 0.8 29 143-172 168-196 (340)
281 COG3842 PotA ABC-type spermidi 50.0 5.6 0.00012 36.0 0.1 14 159-172 36-49 (352)
282 TIGR02173 cyt_kin_arch cytidyl 50.0 7.5 0.00016 30.4 0.8 16 156-171 2-17 (171)
283 PRK06067 flagellar accessory p 49.9 12 0.00026 31.3 2.2 29 143-171 11-42 (234)
284 COG1126 GlnQ ABC-type polar am 49.8 6 0.00013 33.6 0.2 14 158-171 32-45 (240)
285 cd01386 MYSc_type_XVIII Myosin 49.7 8.7 0.00019 38.5 1.4 21 151-171 83-103 (767)
286 PRK11889 flhF flagellar biosyn 49.5 6.1 0.00013 36.7 0.3 18 155-172 242-259 (436)
287 PRK11057 ATP-dependent DNA hel 49.5 11 0.00024 36.6 2.1 25 145-171 33-57 (607)
288 PF10412 TrwB_AAD_bind: Type I 49.2 5.4 0.00012 36.5 -0.1 17 155-171 16-32 (386)
289 TIGR03158 cas3_cyano CRISPR-as 49.0 13 0.00027 33.6 2.2 27 145-171 5-31 (357)
290 TIGR02788 VirB11 P-type DNA tr 48.9 8.1 0.00018 34.1 1.0 28 144-172 135-162 (308)
291 cd01853 Toc34_like Toc34-like 48.8 7 0.00015 33.5 0.5 20 152-171 29-48 (249)
292 KOG0742|consensus 48.8 8.9 0.00019 35.7 1.2 13 156-168 386-398 (630)
293 cd01379 MYSc_type_III Myosin m 48.6 7.8 0.00017 38.1 0.9 21 151-171 83-103 (653)
294 PRK12726 flagellar biosynthesi 48.6 6.7 0.00015 36.1 0.4 19 155-173 207-225 (407)
295 PRK00771 signal recognition pa 48.5 8.7 0.00019 35.9 1.1 21 153-173 94-114 (437)
296 PRK14974 cell division protein 48.4 8 0.00017 34.8 0.9 19 154-172 140-158 (336)
297 PRK14723 flhF flagellar biosyn 48.3 6.8 0.00015 39.2 0.4 18 155-172 186-203 (767)
298 COG3839 MalK ABC-type sugar tr 48.1 6.3 0.00014 35.5 0.1 14 158-171 33-46 (338)
299 cd02027 APSK Adenosine 5'-phos 47.8 8 0.00017 30.2 0.7 13 157-169 2-14 (149)
300 COG1131 CcmA ABC-type multidru 47.6 6.5 0.00014 34.6 0.1 12 160-171 37-48 (293)
301 cd02025 PanK Pantothenate kina 47.6 4.6 0.0001 33.9 -0.8 12 160-171 5-16 (220)
302 PRK03839 putative kinase; Prov 47.5 8.5 0.00018 30.7 0.8 14 157-170 3-16 (180)
303 PRK14721 flhF flagellar biosyn 47.5 6.5 0.00014 36.5 0.2 18 155-172 192-209 (420)
304 KOG0727|consensus 47.3 9.4 0.0002 33.3 1.1 76 129-205 159-246 (408)
305 TIGR00231 small_GTP small GTP- 47.3 6.5 0.00014 29.3 0.1 17 156-172 3-19 (161)
306 PRK10917 ATP-dependent DNA hel 47.2 12 0.00027 36.8 2.1 21 151-171 279-299 (681)
307 PHA02624 large T antigen; Prov 47.2 11 0.00024 36.8 1.6 27 146-172 421-449 (647)
308 PRK10416 signal recognition pa 47.1 7 0.00015 34.9 0.3 18 155-172 115-132 (318)
309 PRK05342 clpX ATP-dependent pr 47.0 9.1 0.0002 35.5 1.0 18 154-171 108-125 (412)
310 cd03274 ABC_SMC4_euk Eukaryoti 46.9 7.4 0.00016 32.4 0.4 13 159-171 30-42 (212)
311 TIGR02030 BchI-ChlI magnesium 46.9 7.1 0.00015 35.2 0.3 29 145-173 16-44 (337)
312 PRK06696 uridine kinase; Valid 46.9 13 0.00028 31.0 1.9 27 143-169 8-37 (223)
313 COG0563 Adk Adenylate kinase a 46.9 9.4 0.0002 31.0 1.0 13 157-169 3-15 (178)
314 PRK14530 adenylate kinase; Pro 46.6 8.9 0.00019 31.7 0.8 15 156-170 5-19 (215)
315 TIGR01650 PD_CobS cobaltochela 46.5 12 0.00027 33.5 1.7 18 154-171 64-81 (327)
316 PRK06762 hypothetical protein; 46.4 10 0.00022 29.8 1.1 14 156-169 4-17 (166)
317 COG1136 SalX ABC-type antimicr 46.2 6.9 0.00015 33.2 0.1 14 158-171 35-48 (226)
318 TIGR00929 VirB4_CagE type IV s 46.2 7.2 0.00016 38.8 0.2 18 154-171 434-451 (785)
319 cd02023 UMPK Uridine monophosp 46.2 6.9 0.00015 31.8 0.1 14 158-171 3-16 (198)
320 TIGR03881 KaiC_arch_4 KaiC dom 46.1 16 0.00034 30.4 2.2 27 145-171 8-37 (229)
321 PF00931 NB-ARC: NB-ARC domain 46.1 14 0.00031 31.5 2.1 29 143-171 6-36 (287)
322 cd01394 radB RadB. The archaea 46.0 18 0.0004 29.7 2.6 28 144-171 6-36 (218)
323 KOG0354|consensus 46.0 15 0.00033 36.4 2.4 24 144-170 69-92 (746)
324 TIGR01351 adk adenylate kinase 45.8 9.6 0.00021 31.4 0.9 13 157-169 2-14 (210)
325 COG0630 VirB11 Type IV secreto 45.7 6.9 0.00015 34.8 0.0 20 154-173 143-162 (312)
326 PF00025 Arf: ADP-ribosylation 45.7 15 0.00032 29.3 2.0 27 145-171 4-31 (175)
327 KOG0735|consensus 45.7 9.5 0.0002 37.9 0.9 18 154-171 701-718 (952)
328 PF10923 DUF2791: P-loop Domai 45.6 10 0.00022 35.2 1.1 27 145-171 40-66 (416)
329 PRK14527 adenylate kinase; Pro 45.5 11 0.00023 30.6 1.1 17 155-171 7-23 (191)
330 PTZ00014 myosin-A; Provisional 45.4 12 0.00026 37.9 1.6 21 151-171 180-200 (821)
331 smart00488 DEXDc2 DEAD-like he 45.1 9.4 0.0002 33.5 0.8 40 128-173 7-46 (289)
332 smart00489 DEXDc3 DEAD-like he 45.1 9.4 0.0002 33.5 0.8 40 128-173 7-46 (289)
333 PF00485 PRK: Phosphoribulokin 45.1 9.6 0.00021 31.0 0.8 15 157-171 2-16 (194)
334 PRK14729 miaA tRNA delta(2)-is 44.8 11 0.00024 33.4 1.1 15 156-170 6-20 (300)
335 PF01926 MMR_HSR1: 50S ribosom 44.6 11 0.00025 27.5 1.1 15 157-171 2-16 (116)
336 cd03240 ABC_Rad50 The catalyti 44.6 8.3 0.00018 31.8 0.3 18 156-173 24-41 (204)
337 cd02019 NK Nucleoside/nucleoti 44.5 12 0.00027 25.0 1.1 15 157-171 2-16 (69)
338 PRK10078 ribose 1,5-bisphospho 44.3 8.3 0.00018 31.1 0.3 16 156-171 4-19 (186)
339 COG0606 Predicted ATPase with 44.3 9.9 0.00021 35.8 0.8 22 149-172 195-216 (490)
340 PRK01172 ski2-like helicase; P 44.3 14 0.00031 36.2 2.0 24 145-170 30-53 (674)
341 cd01393 recA_like RecA is a b 44.0 20 0.00044 29.5 2.6 30 143-172 5-37 (226)
342 PRK09270 nucleoside triphospha 44.0 16 0.00034 30.6 2.0 18 154-171 33-50 (229)
343 KOG0745|consensus 44.0 11 0.00024 35.2 1.1 15 155-169 227-241 (564)
344 KOG2035|consensus 44.0 14 0.0003 32.7 1.6 33 139-171 18-51 (351)
345 PRK12724 flagellar biosynthesi 43.9 8.7 0.00019 35.8 0.4 18 155-172 224-241 (432)
346 TIGR02688 conserved hypothetic 43.8 10 0.00022 35.4 0.8 21 151-173 208-228 (449)
347 TIGR01389 recQ ATP-dependent D 43.8 15 0.00032 35.6 1.9 27 143-171 19-45 (591)
348 PRK10820 DNA-binding transcrip 43.8 9.9 0.00022 36.2 0.8 21 151-171 224-244 (520)
349 PF02367 UPF0079: Uncharacteri 43.7 13 0.00027 28.5 1.2 19 155-173 16-34 (123)
350 KOG0741|consensus 43.7 13 0.00028 35.8 1.4 15 155-169 257-271 (744)
351 TIGR03263 guanyl_kin guanylate 43.6 12 0.00026 29.7 1.1 15 156-170 3-17 (180)
352 PRK05580 primosome assembly pr 43.3 14 0.0003 36.5 1.7 18 155-172 163-180 (679)
353 TIGR03238 dnd_assoc_3 dnd syst 43.2 13 0.00028 35.3 1.4 28 146-173 18-51 (504)
354 COG1122 CbiO ABC-type cobalt t 43.1 12 0.00026 31.9 1.1 17 155-171 31-47 (235)
355 TIGR01243 CDC48 AAA family ATP 42.9 12 0.00026 37.2 1.2 17 155-171 213-229 (733)
356 COG1137 YhbG ABC-type (unclass 42.8 14 0.00031 31.1 1.5 15 159-173 35-49 (243)
357 PRK15429 formate hydrogenlyase 42.8 11 0.00024 37.2 0.9 22 150-171 395-416 (686)
358 COG0552 FtsY Signal recognitio 42.7 14 0.00029 33.3 1.4 20 152-171 137-156 (340)
359 TIGR00382 clpX endopeptidase C 42.7 12 0.00025 34.8 1.0 17 155-171 117-133 (413)
360 PRK00279 adk adenylate kinase; 42.6 12 0.00025 31.1 0.9 14 157-170 3-16 (215)
361 TIGR01074 rep ATP-dependent DN 42.6 10 0.00022 37.1 0.7 20 154-173 14-33 (664)
362 PF03193 DUF258: Protein of un 42.5 19 0.00042 28.8 2.1 24 146-171 29-52 (161)
363 PRK10865 protein disaggregatio 42.3 13 0.00027 37.9 1.3 17 155-171 599-615 (857)
364 cd00071 GMPK Guanosine monopho 42.1 13 0.00029 28.5 1.1 14 157-170 2-15 (137)
365 PRK15424 propionate catabolism 42.1 12 0.00025 36.0 0.9 21 150-170 238-258 (538)
366 PRK02496 adk adenylate kinase; 41.8 12 0.00026 29.9 0.9 14 157-170 4-17 (184)
367 TIGR02329 propionate_PrpR prop 41.8 11 0.00024 36.1 0.7 22 150-171 231-252 (526)
368 PF03668 ATP_bind_2: P-loop AT 41.7 30 0.00064 30.5 3.3 16 156-171 3-18 (284)
369 PRK13721 conjugal transfer ATP 41.6 9.1 0.0002 38.8 0.2 18 154-171 449-466 (844)
370 KOG1534|consensus 41.6 16 0.00035 31.0 1.6 16 155-170 4-19 (273)
371 PRK00300 gmk guanylate kinase; 41.5 15 0.00032 29.9 1.4 17 155-171 6-22 (205)
372 PF08298 AAA_PrkA: PrkA AAA do 41.4 30 0.00065 31.4 3.4 48 146-201 77-142 (358)
373 cd03279 ABC_sbcCD SbcCD and ot 41.4 10 0.00022 31.4 0.4 17 156-172 30-46 (213)
374 cd00227 CPT Chloramphenicol (C 40.9 13 0.00027 29.7 0.8 16 156-171 4-19 (175)
375 KOG0736|consensus 40.9 14 0.0003 37.1 1.2 23 185-207 783-805 (953)
376 TIGR01243 CDC48 AAA family ATP 40.9 13 0.00028 37.0 1.1 17 155-171 488-504 (733)
377 PRK14528 adenylate kinase; Pro 40.9 13 0.00028 30.2 0.9 16 156-171 3-18 (186)
378 TIGR00643 recG ATP-dependent D 40.8 17 0.00038 35.4 2.0 20 152-171 254-273 (630)
379 TIGR00235 udk uridine kinase. 40.6 13 0.00027 30.6 0.8 16 156-171 8-23 (207)
380 TIGR03878 thermo_KaiC_2 KaiC d 40.6 16 0.00034 31.5 1.4 16 154-169 36-51 (259)
381 PHA02530 pseT polynucleotide k 40.6 13 0.00029 32.2 1.1 15 156-170 4-18 (300)
382 PLN02200 adenylate kinase fami 40.5 13 0.00028 31.5 0.9 16 155-170 44-59 (234)
383 PHA02774 E1; Provisional 40.1 19 0.00042 34.9 2.1 26 146-171 424-451 (613)
384 PTZ00301 uridine kinase; Provi 40.0 9.3 0.0002 31.9 -0.1 12 160-171 9-20 (210)
385 TIGR03880 KaiC_arch_3 KaiC dom 39.9 24 0.00051 29.3 2.4 26 146-171 5-33 (224)
386 PRK10867 signal recognition pa 39.8 15 0.00032 34.4 1.2 19 154-172 100-118 (433)
387 PRK13889 conjugal transfer rel 39.8 14 0.00031 38.1 1.2 27 145-172 354-380 (988)
388 TIGR00390 hslU ATP-dependent p 39.5 14 0.0003 34.5 0.9 17 155-171 48-64 (441)
389 TIGR00602 rad24 checkpoint pro 39.4 8.5 0.00018 37.7 -0.4 16 156-171 112-127 (637)
390 PF09439 SRPRB: Signal recogni 39.3 16 0.00035 29.8 1.3 17 155-171 4-20 (181)
391 KOG1532|consensus 39.3 13 0.00029 32.7 0.8 20 153-172 18-37 (366)
392 TIGR02238 recomb_DMC1 meiotic 39.2 28 0.00061 30.9 2.9 29 143-171 82-113 (313)
393 PF05872 DUF853: Bacterial pro 39.2 11 0.00024 35.4 0.3 15 159-173 24-38 (502)
394 CHL00176 ftsH cell division pr 39.0 13 0.00029 36.4 0.9 17 155-171 217-233 (638)
395 COG4096 HsdR Type I site-speci 38.9 24 0.00052 35.5 2.5 31 141-172 173-203 (875)
396 PRK08533 flagellar accessory p 38.9 16 0.00034 30.9 1.2 17 155-171 25-41 (230)
397 cd03115 SRP The signal recogni 38.9 12 0.00025 29.7 0.4 16 157-172 3-18 (173)
398 PRK06851 hypothetical protein; 38.8 15 0.00032 33.6 1.0 28 145-172 21-48 (367)
399 PF01745 IPT: Isopentenyl tran 38.8 15 0.00034 31.1 1.1 14 157-170 4-17 (233)
400 TIGR02639 ClpA ATP-dependent C 38.7 10 0.00022 37.7 0.0 31 144-174 193-223 (731)
401 TIGR03574 selen_PSTK L-seryl-t 38.6 14 0.0003 31.3 0.8 16 157-172 2-17 (249)
402 PRK04296 thymidine kinase; Pro 38.6 8.3 0.00018 31.5 -0.6 18 156-173 4-21 (190)
403 PRK14962 DNA polymerase III su 38.5 15 0.00033 34.7 1.1 22 150-171 31-53 (472)
404 TIGR02236 recomb_radA DNA repa 38.5 26 0.00056 30.8 2.5 28 144-171 82-112 (310)
405 PRK14961 DNA polymerase III su 38.5 11 0.00025 34.0 0.3 18 154-171 38-55 (363)
406 PRK14970 DNA polymerase III su 38.3 16 0.00035 32.8 1.2 27 145-171 29-56 (367)
407 PRK09825 idnK D-gluconate kina 38.3 16 0.00034 29.5 1.0 16 156-171 5-20 (176)
408 TIGR02397 dnaX_nterm DNA polym 38.2 16 0.00034 32.5 1.1 24 148-171 29-53 (355)
409 PRK13949 shikimate kinase; Pro 38.2 15 0.00033 29.3 0.9 16 156-171 3-18 (169)
410 COG0467 RAD55 RecA-superfamily 38.1 18 0.00039 30.8 1.4 25 146-170 12-39 (260)
411 PRK12727 flagellar biosynthesi 38.0 12 0.00026 36.0 0.3 17 155-171 351-367 (559)
412 cd00544 CobU Adenosylcobinamid 38.0 17 0.00036 29.3 1.1 14 157-170 2-15 (169)
413 TIGR00959 ffh signal recogniti 38.0 15 0.00033 34.2 1.0 18 154-171 99-116 (428)
414 PRK09302 circadian clock prote 38.0 24 0.00052 33.4 2.4 29 143-171 17-48 (509)
415 TIGR01587 cas3_core CRISPR-ass 37.9 16 0.00036 32.5 1.2 15 157-171 2-16 (358)
416 PRK13891 conjugal transfer pro 37.9 12 0.00025 38.1 0.3 18 154-171 488-505 (852)
417 KOG0922|consensus 37.8 20 0.00043 35.1 1.8 18 154-171 66-83 (674)
418 PRK13873 conjugal transfer ATP 37.7 13 0.00028 37.5 0.5 17 155-171 442-458 (811)
419 KOG0924|consensus 37.6 19 0.00042 35.6 1.7 20 152-171 369-388 (1042)
420 PRK11664 ATP-dependent RNA hel 37.6 21 0.00045 36.2 1.9 28 143-172 11-38 (812)
421 KOG2655|consensus 37.5 23 0.0005 32.3 2.0 23 148-170 15-37 (366)
422 KOG0328|consensus 37.5 29 0.00063 30.8 2.6 24 146-171 58-81 (400)
423 cd03272 ABC_SMC3_euk Eukaryoti 37.5 13 0.00028 31.2 0.4 15 157-171 26-40 (243)
424 PF02463 SMC_N: RecF/RecN/SMC 37.3 18 0.00038 29.8 1.2 16 156-171 26-41 (220)
425 PRK05800 cobU adenosylcobinami 37.2 17 0.00037 29.2 1.1 15 156-170 3-17 (170)
426 PRK05057 aroK shikimate kinase 37.1 19 0.00041 28.8 1.3 16 156-171 6-21 (172)
427 COG0396 sufC Cysteine desulfur 37.1 19 0.0004 30.9 1.3 29 148-176 18-55 (251)
428 COG4185 Uncharacterized protei 37.1 22 0.00048 28.9 1.6 16 157-173 6-21 (187)
429 cd02028 UMPK_like Uridine mono 37.0 16 0.00034 29.5 0.8 15 157-171 2-16 (179)
430 PF13481 AAA_25: AAA domain; P 36.9 16 0.00034 29.3 0.8 17 156-172 34-50 (193)
431 PRK05541 adenylylsulfate kinas 36.8 17 0.00037 28.8 1.0 16 156-171 9-24 (176)
432 PRK11545 gntK gluconate kinase 36.7 11 0.00023 29.9 -0.2 13 160-172 1-13 (163)
433 PRK11034 clpA ATP-dependent Cl 36.7 22 0.00047 35.7 1.9 35 134-169 463-503 (758)
434 KOG0925|consensus 36.6 21 0.00045 34.0 1.6 20 152-171 60-79 (699)
435 TIGR02655 circ_KaiC circadian 36.5 27 0.00058 33.0 2.4 26 144-169 8-36 (484)
436 TIGR01425 SRP54_euk signal rec 36.5 15 0.00034 34.2 0.8 19 154-172 100-118 (429)
437 PF05707 Zot: Zonular occluden 36.5 15 0.00033 29.9 0.7 16 157-172 3-18 (193)
438 PRK00091 miaA tRNA delta(2)-is 36.4 18 0.00038 32.2 1.1 15 156-170 6-20 (307)
439 PRK13853 type IV secretion sys 36.3 12 0.00025 37.7 -0.1 17 155-171 427-443 (789)
440 PRK01184 hypothetical protein; 36.3 16 0.00035 29.1 0.8 15 156-170 3-17 (184)
441 TIGR03783 Bac_Flav_CT_G Bacter 36.2 12 0.00026 38.0 -0.0 18 154-171 438-455 (829)
442 PRK13880 conjugal transfer cou 36.1 25 0.00053 34.6 2.2 19 154-172 175-193 (636)
443 TIGR01447 recD exodeoxyribonuc 36.0 13 0.00028 36.1 0.2 25 146-172 154-178 (586)
444 PLN03187 meiotic recombination 36.0 32 0.0007 31.1 2.8 30 142-171 111-143 (344)
445 PRK05480 uridine/cytidine kina 35.8 17 0.00036 29.8 0.8 16 156-171 8-23 (209)
446 COG0464 SpoVK ATPases of the A 35.8 17 0.00036 34.3 0.9 54 152-205 274-333 (494)
447 TIGR02012 tigrfam_recA protein 35.7 30 0.00066 30.9 2.5 30 142-171 39-72 (321)
448 PRK04182 cytidylate kinase; Pr 35.7 17 0.00037 28.6 0.8 14 157-170 3-16 (180)
449 KOG0743|consensus 35.6 16 0.00035 34.1 0.8 14 158-171 239-252 (457)
450 PF01078 Mg_chelatase: Magnesi 35.6 19 0.0004 30.2 1.1 18 155-172 23-40 (206)
451 PRK11131 ATP-dependent RNA hel 35.5 17 0.00038 38.5 1.1 22 149-171 85-106 (1294)
452 PRK13767 ATP-dependent helicas 35.5 24 0.00051 36.1 2.0 25 145-171 40-64 (876)
453 COG0324 MiaA tRNA delta(2)-iso 35.4 19 0.00041 32.0 1.2 16 156-171 5-20 (308)
454 TIGR00174 miaA tRNA isopenteny 35.4 19 0.00041 31.7 1.1 15 157-171 2-16 (287)
455 TIGR02759 TraD_Ftype type IV c 35.3 13 0.00028 35.9 0.1 15 156-170 178-192 (566)
456 PRK05416 glmZ(sRNA)-inactivati 35.3 13 0.00028 32.8 0.0 18 156-173 8-25 (288)
457 PRK13531 regulatory ATPase Rav 35.3 18 0.00039 34.4 1.0 25 145-171 32-56 (498)
458 cd01876 YihA_EngB The YihA (En 35.2 13 0.00028 28.3 0.0 16 157-172 2-17 (170)
459 PRK06645 DNA polymerase III su 35.0 18 0.00039 34.5 1.0 23 149-171 37-60 (507)
460 TIGR00176 mobB molybdopterin-g 35.0 13 0.00029 29.3 0.1 14 158-171 3-16 (155)
461 PTZ00088 adenylate kinase 1; P 34.9 18 0.00039 30.6 0.9 13 157-169 9-21 (229)
462 cd03238 ABC_UvrA The excision 34.9 13 0.00029 30.0 0.1 14 158-171 25-38 (176)
463 TIGR02768 TraA_Ti Ti-type conj 34.7 19 0.00041 36.0 1.1 27 146-173 361-387 (744)
464 PF00005 ABC_tran: ABC transpo 34.7 22 0.00048 26.6 1.3 16 156-171 13-28 (137)
465 PTZ00110 helicase; Provisional 34.5 24 0.00052 33.9 1.8 25 145-171 160-184 (545)
466 cd01860 Rab5_related Rab5-rela 34.5 24 0.00051 27.0 1.5 17 155-171 2-18 (163)
467 PRK15483 type III restriction- 34.4 9.1 0.0002 39.3 -1.1 15 160-174 65-79 (986)
468 PRK13946 shikimate kinase; Pro 34.3 19 0.00042 29.0 1.0 17 155-171 11-27 (184)
469 cd01864 Rab19 Rab19 subfamily. 34.3 25 0.00054 27.1 1.6 17 155-171 4-20 (165)
470 PRK09401 reverse gyrase; Revie 34.1 27 0.00059 36.8 2.2 24 145-170 88-111 (1176)
471 PRK04301 radA DNA repair and r 34.1 34 0.00074 30.2 2.6 29 144-172 89-120 (317)
472 cd02022 DPCK Dephospho-coenzym 34.0 19 0.0004 28.9 0.8 15 157-171 2-16 (179)
473 cd04139 RalA_RalB RalA/RalB su 33.8 21 0.00046 27.2 1.1 15 157-171 3-17 (164)
474 COG4650 RtcR Sigma54-dependent 33.7 21 0.00046 31.8 1.2 36 134-170 189-224 (531)
475 cd01852 AIG1 AIG1 (avrRpt2-ind 33.4 18 0.00038 29.4 0.6 16 156-171 2-17 (196)
476 PF13304 AAA_21: AAA domain; P 33.4 14 0.0003 29.9 0.0 15 159-173 4-18 (303)
477 PLN02165 adenylate isopentenyl 33.3 21 0.00045 32.2 1.0 16 156-171 45-60 (334)
478 COG4525 TauB ABC-type taurine 33.3 22 0.00048 30.0 1.1 16 156-171 33-48 (259)
479 cd00876 Ras Ras family. The R 33.3 22 0.00047 26.9 1.1 15 157-171 2-16 (160)
480 PRK13947 shikimate kinase; Pro 33.2 20 0.00044 28.1 0.9 15 156-170 3-17 (171)
481 PRK13830 conjugal transfer pro 33.1 16 0.00034 37.0 0.3 18 154-171 456-473 (818)
482 PRK11608 pspF phage shock prot 33.1 20 0.00042 32.0 0.9 20 152-171 27-46 (326)
483 PRK05973 replicative DNA helic 33.1 31 0.00068 29.4 2.1 26 146-171 54-81 (237)
484 PF04670 Gtr1_RagA: Gtr1/RagA 33.0 22 0.00047 30.3 1.1 13 157-169 2-14 (232)
485 TIGR00678 holB DNA polymerase 33.0 37 0.00081 27.2 2.5 24 148-171 7-31 (188)
486 KOG1970|consensus 32.9 18 0.00039 34.8 0.6 16 156-171 112-127 (634)
487 PRK14952 DNA polymerase III su 32.7 19 0.00041 35.0 0.8 23 149-171 29-52 (584)
488 COG0513 SrmB Superfamily II DN 32.6 26 0.00056 33.4 1.6 25 145-171 59-83 (513)
489 PF01293 PEPCK_ATP: Phosphoeno 32.6 24 0.00052 33.3 1.4 20 156-175 212-238 (466)
490 PRK05201 hslU ATP-dependent pr 32.5 20 0.00043 33.5 0.8 16 155-170 51-66 (443)
491 KOG3354|consensus 32.5 29 0.00062 28.1 1.6 19 151-169 9-27 (191)
492 KOG0923|consensus 32.5 27 0.00059 34.5 1.7 19 153-171 279-297 (902)
493 cd04164 trmE TrmE (MnmE, ThdF, 32.5 16 0.00034 27.6 0.1 15 157-171 4-18 (157)
494 TIGR03345 VI_ClpV1 type VI sec 32.3 30 0.00064 35.3 2.1 17 155-171 597-613 (852)
495 PF11406 Tachystatin_A: Antimi 32.3 10 0.00022 22.5 -0.7 15 149-163 5-19 (44)
496 PRK00625 shikimate kinase; Pro 32.2 21 0.00045 28.8 0.8 15 156-170 2-16 (173)
497 cd03278 ABC_SMC_barmotin Barmo 32.2 16 0.00034 30.0 0.1 15 158-172 26-40 (197)
498 PF02702 KdpD: Osmosensitive K 32.1 15 0.00033 30.7 0.0 19 156-174 7-25 (211)
499 TIGR01613 primase_Cterm phage/ 32.0 10 0.00022 33.3 -1.1 29 143-171 62-93 (304)
500 PRK03731 aroL shikimate kinase 32.0 23 0.0005 27.8 1.0 16 156-171 4-19 (171)
No 1
>KOG0243|consensus
Probab=100.00 E-value=3.7e-40 Score=317.50 Aligned_cols=160 Identities=49% Similarity=0.867 Sum_probs=140.6
Q ss_pred CCcccCCCcchhhcccceeeeecCC-ceEEEEecCCCC-CcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEE
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSS-SREITIKERVND-KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTV 157 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~-~~ti~v~~~~~~-~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i 157 (243)
+.||+||++.+|...++..+|.+++ ++.|.+...... ...|+|+||+||+|.+.|.++|+.++.|+|+.++.||||||
T Consensus 53 VivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTI 132 (1041)
T KOG0243|consen 53 VIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTI 132 (1041)
T ss_pred EEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceE
Confidence 5689999999999889999999998 566888766332 36889999999999999999999999999999999999999
Q ss_pred EEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCC-c
Q psy9445 158 FAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDI-T 236 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~-~ 236 (243)
|||||||+||||||.|..... .|..++.+|||||++.+||..++... ..|.|+|||+|+|||.++|||+|+... .
T Consensus 133 FAYGQTGTGKTyTMeG~~~~~---~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~~~~~ 208 (1041)
T KOG0243|consen 133 FAYGQTGTGKTYTMEGGERKK---NGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASEDTSDK 208 (1041)
T ss_pred EEecCCCCCceeeeecCcccc---cCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCcccccc
Confidence 999999999999999975422 36677889999999999999999744 789999999999999999999998765 6
Q ss_pred cceecCC
Q psy9445 237 KLRLKKN 243 (243)
Q Consensus 237 ~l~i~e~ 243 (243)
.+++++|
T Consensus 209 ~~~~k~~ 215 (1041)
T KOG0243|consen 209 KLRIKDD 215 (1041)
T ss_pred ccccccC
Confidence 7777654
No 2
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3.1e-38 Score=282.28 Aligned_cols=151 Identities=40% Similarity=0.687 Sum_probs=131.6
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCC----------CCcceEEecceeecCCCcchhhhccccchhHHHH
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVN----------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEV 149 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~----------~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~ 149 (243)
..+|+||+...|...+...+|.+.++..+.+.+... ...++.|.||+||+++++|.+||+.++.|+|+.+
T Consensus 4 V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~ 83 (338)
T cd01370 4 VAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLVDGV 83 (338)
T ss_pred EEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999877777888888877766655432 2346899999999999999999999999999999
Q ss_pred hcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeEEeC
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDL 228 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~-~~~~~v~~S~~eiyne~v~DL 228 (243)
++|||+||||||||||||||||+|+... +|||||++++||+.++... +..|.|++||+|||||+|+||
T Consensus 84 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~-----------~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DL 152 (338)
T cd01370 84 LNGYNATVFAYGATGAGKTHTMLGTDSD-----------PGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDL 152 (338)
T ss_pred HCCCCceEEeeCCCCCCCeEEEcCCCCC-----------CchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEEC
Confidence 9999999999999999999999998643 4999999999999998754 678999999999999999999
Q ss_pred CCCCCCCccceecCC
Q psy9445 229 LSPTDDITKLRLKKN 243 (243)
Q Consensus 229 L~~~~~~~~l~i~e~ 243 (243)
|++. ..+|+|+||
T Consensus 153 L~~~--~~~l~i~ed 165 (338)
T cd01370 153 LSPS--SGPLELRED 165 (338)
T ss_pred CCCC--CCCceEEEc
Confidence 9985 456777775
No 3
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.1e-37 Score=277.52 Aligned_cols=149 Identities=30% Similarity=0.576 Sum_probs=129.3
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCC----------CCcceEEecceeecCCCcchhhhccccchhHHH
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVN----------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDE 148 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~----------~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~ 148 (243)
+..+|+||+...|...+...+|.+.++.++.+.++.. ...++.|.||+||+++++|++||+.++.|+|+.
T Consensus 4 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~ 83 (345)
T cd01368 4 KVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLVQD 83 (345)
T ss_pred EEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHHHH
Confidence 3578999999998766666677777778888776543 235789999999999999999999999999999
Q ss_pred HhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeC
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDL 228 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DL 228 (243)
+++|+|+||||||||||||||||+|.... +|||||++++||+.+.. |.|.+||+|||||+|+||
T Consensus 84 ~l~G~n~ti~aYGqtGSGKTyTm~G~~~~-----------~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DL 147 (345)
T cd01368 84 LLKGKNSLLFTYGVTNSGKTYTMQGSPGD-----------GGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDL 147 (345)
T ss_pred HhCCCceEEEEeCCCCCCCeEEecCCCCC-----------CchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeC
Confidence 99999999999999999999999998643 49999999999999875 899999999999999999
Q ss_pred CCCCCC----CccceecCC
Q psy9445 229 LSPTDD----ITKLRLKKN 243 (243)
Q Consensus 229 L~~~~~----~~~l~i~e~ 243 (243)
|++.+. ..+++|+||
T Consensus 148 L~~~~~~~~~~~~l~i~ed 166 (345)
T cd01368 148 LEDSPSSTKKRQSLRLRED 166 (345)
T ss_pred CCCccccccCCCceEEEEC
Confidence 998653 356888775
No 4
>KOG0245|consensus
Probab=100.00 E-value=2.9e-38 Score=300.73 Aligned_cols=155 Identities=30% Similarity=0.532 Sum_probs=133.6
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecC-------CCcchhhhccccchhHHHHhc
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQ-------ESKQVDVYKYVVNPLIDEVLS 151 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~-------~a~q~ev~~~~~~~~v~~~~~ 151 (243)
...||+||++.+|....+.++|.+.++.+..+.+...... ..|+||+.|+. .|+|..||+.+..++++.+|+
T Consensus 7 ~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~-~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfE 85 (1221)
T KOG0245|consen 7 KVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDA-PKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFE 85 (1221)
T ss_pred EEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccC-CceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhc
Confidence 3568999999999999999999999887666665544333 34999999954 578999999999999999999
Q ss_pred CCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh--cCCceEEEEEEEEEEECCeEEeCC
Q psy9445 152 GYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL--LGDAEFTVRVSFLEIYNEELIDLL 229 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~--~~~~~~~v~~S~~eiyne~v~DLL 229 (243)
|||+||||||||||||||||+|.++. .++|||||.|++||++|.. ..+..|.|.|||+|||||+|+|||
T Consensus 86 GYN~ClFAYGQTGSGKSYTMMG~~~~---------~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL 156 (1221)
T KOG0245|consen 86 GYNVCLFAYGQTGSGKSYTMMGFQEP---------DEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLL 156 (1221)
T ss_pred ccceEEEEeccCCCCcceeeeccCCC---------CCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHh
Confidence 99999999999999999999998631 2369999999999999987 345689999999999999999999
Q ss_pred CCCCCCccceecCC
Q psy9445 230 SPTDDITKLRLKKN 243 (243)
Q Consensus 230 ~~~~~~~~l~i~e~ 243 (243)
+..+....||+||+
T Consensus 157 ~~p~~kg~LRVREH 170 (1221)
T KOG0245|consen 157 NAPKSKGGLRVREH 170 (1221)
T ss_pred hCCCCCCCceeecc
Confidence 94457788999986
No 5
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8.5e-37 Score=272.90 Aligned_cols=156 Identities=37% Similarity=0.640 Sum_probs=125.3
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
+..+|+||+...|...+...++...++.++.+... ..+.|.||+||+++++|++||+.++.|+|+.+++|||+|||
T Consensus 4 ~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~----~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~ 79 (337)
T cd01373 4 KVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH----PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIF 79 (337)
T ss_pred EEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC----CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 35689999999887555555555555555554432 25799999999999999999999999999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc-----CCceEEEEEEEEEEECCeEEeCCCCCC
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL-----GDAEFTVRVSFLEIYNEELIDLLSPTD 233 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~-----~~~~~~v~~S~~eiyne~v~DLL~~~~ 233 (243)
|||||||||||||+|+...... .....+|||||++++||+.++.. .+..|.|.+||+|||||+|+|||+|..
T Consensus 80 aYGqTGSGKTyTm~G~~~~~~~---~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~ 156 (337)
T cd01373 80 AYGQTGSGKTYTMMGPSSSDDE---SPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS 156 (337)
T ss_pred EeCCCCCCceEEecCCCCcccc---ccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC
Confidence 9999999999999997543210 12345799999999999988753 345799999999999999999998854
Q ss_pred CCccceecCC
Q psy9445 234 DITKLRLKKN 243 (243)
Q Consensus 234 ~~~~l~i~e~ 243 (243)
..++|+||
T Consensus 157 --~~l~i~e~ 164 (337)
T cd01373 157 --RNLKIRED 164 (337)
T ss_pred --CCceEEEC
Confidence 45777764
No 6
>KOG4280|consensus
Probab=100.00 E-value=6.5e-38 Score=290.02 Aligned_cols=153 Identities=45% Similarity=0.758 Sum_probs=127.5
Q ss_pred CCcccCCCcchhhcccceeeeecCCce-EEEEecCCC--CCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceE
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSR-EITIKERVN--DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCT 156 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~-ti~v~~~~~--~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~ 156 (243)
..+++||+...+.......++.++... .+.+.++.. .+.+++|+||.||+++++|.+||+.++.|+|+++++|||+|
T Consensus 9 vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgt 88 (574)
T KOG4280|consen 9 VVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGT 88 (574)
T ss_pred EEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCce
Confidence 467899999987766655555555443 455555443 35778899999999999999999999999999999999999
Q ss_pred EEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeEEeCCCCCCCC
Q psy9445 157 VFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDI 235 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~-~~~~~v~~S~~eiyne~v~DLL~~~~~~ 235 (243)
|||||||||||||||+|+. + ...|||||++.+||..|+..+ ...|.|+|||+|||||+|+|||+|...
T Consensus 89 vFaYGQTGsGKTyTM~G~~--~--------~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~- 157 (574)
T KOG4280|consen 89 VFAYGQTGSGKTYTMIGPD--P--------ELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP- 157 (574)
T ss_pred EEEeccCCCCCceEeeCCC--h--------hhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-
Confidence 9999999999999999982 2 347999999999999999854 346999999999999999999999653
Q ss_pred ccceecCC
Q psy9445 236 TKLRLKKN 243 (243)
Q Consensus 236 ~~l~i~e~ 243 (243)
..|+|+||
T Consensus 158 ~~l~lre~ 165 (574)
T KOG4280|consen 158 KGLELRED 165 (574)
T ss_pred CCceeeEc
Confidence 66777765
No 7
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.6e-36 Score=273.08 Aligned_cols=153 Identities=36% Similarity=0.637 Sum_probs=131.8
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCC----CCcceEEecceeecCC-------CcchhhhccccchhHH
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVN----DKISKTFGFDRVFSQE-------SKQVDVYKYVVNPLID 147 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~----~~~~~~f~fD~vF~~~-------a~q~ev~~~~~~~~v~ 147 (243)
+..+|+||+...|...+...++.+.+ +.+.+..+.. ....++|.||+||++. ++|++||+.++.|+|+
T Consensus 4 ~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~ 82 (356)
T cd01365 4 KVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLD 82 (356)
T ss_pred EEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 35689999999998888888888877 6666665543 3467899999999998 9999999999999999
Q ss_pred HHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcC--CceEEEEEEEEEEECCeE
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG--DAEFTVRVSFLEIYNEEL 225 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~--~~~~~v~~S~~eiyne~v 225 (243)
.+++|+|+||||||||||||||||+|.... .|||||++++||+.++... ...|.|.+||+|||||+|
T Consensus 83 ~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~-----------~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v 151 (356)
T cd01365 83 HAFEGYNVCLFAYGQTGSGKSYTMMGYKEE-----------KGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKV 151 (356)
T ss_pred HHhCCCceEEEEecCCCCCCeEEecCCCCC-----------CchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCee
Confidence 999999999999999999999999998542 4999999999999998743 468999999999999999
Q ss_pred EeCCCCCC-CCccceecCC
Q psy9445 226 IDLLSPTD-DITKLRLKKN 243 (243)
Q Consensus 226 ~DLL~~~~-~~~~l~i~e~ 243 (243)
+|||++.. ....++|+||
T Consensus 152 ~DLL~~~~~~~~~l~i~~~ 170 (356)
T cd01365 152 RDLLNPKKKNKGNLKVREH 170 (356)
T ss_pred eeCCCCCccCCcCceEEEC
Confidence 99999875 4456777764
No 8
>KOG0242|consensus
Probab=100.00 E-value=6.9e-37 Score=291.99 Aligned_cols=151 Identities=44% Similarity=0.737 Sum_probs=128.9
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCCC---CcceEEecceeecCCCcchhhhccccchhHHHHhcCCceE
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVND---KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCT 156 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~---~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~ 156 (243)
..|++||++..+...+..+.+.+..+..+...-.... ..+..|.||+||+++++|.+||+..+.|+|.+++.|+|+|
T Consensus 10 V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~T 89 (675)
T KOG0242|consen 10 VSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNAT 89 (675)
T ss_pred EEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccc
Confidence 5688999999866656666666666665544322221 1157999999999999999999999999999999999999
Q ss_pred EEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCCc
Q psy9445 157 VFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT 236 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~~ 236 (243)
|||||||||||||||.|....| ||||+++++||+.|....++.|.|.+||+|||||.|+|||+|+. .
T Consensus 90 VFAYG~TgSGKTyTM~G~~~~P-----------Gii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~--~ 156 (675)
T KOG0242|consen 90 VFAYGQTGSGKTYTMSGSEDDP-----------GIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDG--G 156 (675)
T ss_pred eeeecCCCCCCceEEeccCCCC-----------CeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCC--C
Confidence 9999999999999999987644 99999999999999998899999999999999999999999965 4
Q ss_pred cceecCC
Q psy9445 237 KLRLKKN 243 (243)
Q Consensus 237 ~l~i~e~ 243 (243)
.|+|+||
T Consensus 157 ~L~irED 163 (675)
T KOG0242|consen 157 DLRLRED 163 (675)
T ss_pred CceEeEc
Confidence 4888886
No 9
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.1e-36 Score=270.62 Aligned_cols=150 Identities=37% Similarity=0.603 Sum_probs=129.4
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCC------CcceEEecceeecCCCcchhhhccccchhHHHHhcC
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVND------KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSG 152 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~------~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G 152 (243)
+..+|+||+...|...+...++.+.+++++.+.++... ...++|.||+||++.++|++||+.++.|+|+.+++|
T Consensus 4 ~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G 83 (322)
T cd01367 4 TVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEG 83 (322)
T ss_pred EEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 35689999999998777777887777777877754322 136799999999999999999999999999999999
Q ss_pred CceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCC
Q psy9445 153 YNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPT 232 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~ 232 (243)
+|+||||||||||||||||+|+... +|||||++++||+.++... ..|.|++||+|||||+|+|||++.
T Consensus 84 ~n~~i~ayGqtGSGKTyTm~G~~~~-----------~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~ 151 (322)
T cd01367 84 GVATCFAYGQTGSGKTYTMLGDENQ-----------EGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLNDR 151 (322)
T ss_pred CceEEEeccCCCCCCceEecCcCCc-----------CccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccCc
Confidence 9999999999999999999998643 4999999999999998744 679999999999999999999983
Q ss_pred CCCccceecCC
Q psy9445 233 DDITKLRLKKN 243 (243)
Q Consensus 233 ~~~~~l~i~e~ 243 (243)
.+++|+||
T Consensus 152 ---~~l~i~~~ 159 (322)
T cd01367 152 ---KRLSVLED 159 (322)
T ss_pred ---cceeEEEc
Confidence 45777765
No 10
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=9.4e-36 Score=267.78 Aligned_cols=164 Identities=47% Similarity=0.831 Sum_probs=135.7
Q ss_pred CCCcccCCCcchhhcccceeeeecCCc-eEEEEecCCC-CCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSS-REITIKERVN-DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCT 156 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~-~ti~v~~~~~-~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~ 156 (243)
+..||+||+...|...++..++.+.+. ++|.+.+... ....+.|.||+||+++++|++||+.++.|+|+.+++|+|+|
T Consensus 5 ~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~ 84 (352)
T cd01364 5 QVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCT 84 (352)
T ss_pred EEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEE
Confidence 357899999999876666677777665 5776655432 23577999999999999999999999999999999999999
Q ss_pred EEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCC-CC
Q psy9445 157 VFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD-DI 235 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~-~~ 235 (243)
|||||||||||||||+|........++.....+|||||++++||+.++.. +..|.|++||+|||||+|+|||++.. ..
T Consensus 85 i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~~ 163 (352)
T cd01364 85 IFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSESDLN 163 (352)
T ss_pred EEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCccccC
Confidence 99999999999999999865432222334456799999999999999875 66899999999999999999999875 34
Q ss_pred ccceecCC
Q psy9445 236 TKLRLKKN 243 (243)
Q Consensus 236 ~~l~i~e~ 243 (243)
.+++++||
T Consensus 164 ~~l~i~e~ 171 (352)
T cd01364 164 KPLRIFDD 171 (352)
T ss_pred ccceEEec
Confidence 66888775
No 11
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.7e-35 Score=263.02 Aligned_cols=147 Identities=41% Similarity=0.738 Sum_probs=127.8
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEE
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFA 159 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~a 159 (243)
..+|+||+...|.. +..+++.+.++.++.+.++ ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||
T Consensus 4 V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~---~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 4 VSVRVRPLNPRESD-NEQVAWSIDNDNTISLEES---TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred EEEEcCcCCccccc-CCcceEEECCCCEEEEcCC---CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 56899999998873 3455676777767777654 3478999999999999999999999999999999999999999
Q ss_pred eccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCCccce
Q psy9445 160 YGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 239 (243)
Q Consensus 160 yG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~~~l~ 239 (243)
||||||||||||+|+... +|||||++++||+.+....+..|.|.+||+|||||+|+|||+|.. ..++
T Consensus 80 yG~tgSGKT~T~~G~~~~-----------~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~ 146 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQE-----------PGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP--QELR 146 (321)
T ss_pred ecCCCCCCceeccCCCCC-----------CchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC--CCce
Confidence 999999999999998543 499999999999999887788999999999999999999999965 5677
Q ss_pred ecCC
Q psy9445 240 LKKN 243 (243)
Q Consensus 240 i~e~ 243 (243)
++||
T Consensus 147 i~~~ 150 (321)
T cd01374 147 IRED 150 (321)
T ss_pred EEEC
Confidence 7664
No 12
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=3.6e-35 Score=260.69 Aligned_cols=150 Identities=33% Similarity=0.571 Sum_probs=123.0
Q ss_pred CCcccCCCcchhhcccceeeeecCCc---eEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceE
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSS---REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCT 156 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~---~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~ 156 (243)
..+|+||+...|.....+..+...++ ..+.+..+.+...+++|.||+||+++++|++||+..+.|+|+.+++|+|+|
T Consensus 4 V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~ 83 (319)
T cd01376 4 VVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNAT 83 (319)
T ss_pred EEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceE
Confidence 46899999888843333322222211 467777665555678999999999999999999999999999999999999
Q ss_pred EEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCCc
Q psy9445 157 VFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT 236 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~~ 236 (243)
|||||||||||||||+|.... +|||||++++||+.++.. .+.+.|.+||+|||||+|+|||++.. .
T Consensus 84 i~ayG~tgSGKTyTm~G~~~~-----------~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~--~ 149 (319)
T cd01376 84 VFAYGSTGAGKTHTMLGDPNE-----------PGLIPRTLSDLLRMGRKQ-AWTGAFSMSYYEIYNEKVYDLLEPAK--K 149 (319)
T ss_pred EEEECCCCCCCcEEEeCCcCc-----------cchHHHHHHHHHHHHhhc-cccceEEEEEEEEECCEeeEccCCCC--C
Confidence 999999999999999998543 499999999999988764 46799999999999999999999853 4
Q ss_pred cceecCC
Q psy9445 237 KLRLKKN 243 (243)
Q Consensus 237 ~l~i~e~ 243 (243)
.++|+||
T Consensus 150 ~l~i~~~ 156 (319)
T cd01376 150 ELPIRED 156 (319)
T ss_pred CceEEEc
Confidence 5666654
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=2.9e-35 Score=262.70 Aligned_cols=156 Identities=44% Similarity=0.715 Sum_probs=130.7
Q ss_pred CCCcccCCCcchhhcccceeeeecC-CceEEEEecCCC--CCcceEEecceeecCCCcchhhhccccchhHHHHhcCCce
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCS-SSREITIKERVN--DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNC 155 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~-~~~ti~v~~~~~--~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~ 155 (243)
+..+|+||+...|...+...++..+ +..++.+..+.. ...+++|.||++|+++++|.+||+..+.|+|+.+++|+|+
T Consensus 4 ~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~ 83 (333)
T cd01371 4 KVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNG 83 (333)
T ss_pred EEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCce
Confidence 3568999999988766665566554 445677766543 2467899999999999999999999999999999999999
Q ss_pred EEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCC
Q psy9445 156 TVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDI 235 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~ 235 (243)
||||||||||||||||+|.... ...+|||||++++||+.++...+..|.|.+||+|||||+|+|||++.. .
T Consensus 84 ~i~ayG~tgSGKTyTm~G~~~~--------~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~-~ 154 (333)
T cd01371 84 TIFAYGQTGTGKTFTMEGVREP--------PELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQ-K 154 (333)
T ss_pred eEEecCCCCCCCcEeecCCCCc--------ccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCC-C
Confidence 9999999999999999997542 234699999999999999987778899999999999999999999854 3
Q ss_pred ccceecCC
Q psy9445 236 TKLRLKKN 243 (243)
Q Consensus 236 ~~l~i~e~ 243 (243)
..++++||
T Consensus 155 ~~l~i~~~ 162 (333)
T cd01371 155 KKLELKER 162 (333)
T ss_pred CceeEEEc
Confidence 46667664
No 14
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=7.3e-35 Score=259.39 Aligned_cols=152 Identities=43% Similarity=0.758 Sum_probs=130.1
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
+..+|+||+...|...+...++.+.+++++.+..+. ..+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||
T Consensus 5 ~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~---~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ 81 (325)
T cd01369 5 KVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD---DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF 81 (325)
T ss_pred EEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC---CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEE
Confidence 356899999998876677778888888888887653 36799999999999999999999999999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc-CCceEEEEEEEEEEECCeEEeCCCCCCCCcc
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~-~~~~~~v~~S~~eiyne~v~DLL~~~~~~~~ 237 (243)
|||||||||||||+|+... ....||+||++++||+.+... ....|.|.+||+|||||+++|||++.. ..
T Consensus 82 ayG~tgSGKT~Tm~G~~~~--------~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~--~~ 151 (325)
T cd01369 82 AYGQTGSGKTYTMEGPPGD--------PELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK--DN 151 (325)
T ss_pred EeCCCCCCceEEecCCCCc--------cccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc--CC
Confidence 9999999999999998652 123599999999999999874 445799999999999999999999864 34
Q ss_pred ceecCC
Q psy9445 238 LRLKKN 243 (243)
Q Consensus 238 l~i~e~ 243 (243)
++++||
T Consensus 152 l~i~~~ 157 (325)
T cd01369 152 LQVHED 157 (325)
T ss_pred ceEEEc
Confidence 556553
No 15
>KOG0241|consensus
Probab=100.00 E-value=1.9e-35 Score=278.61 Aligned_cols=154 Identities=32% Similarity=0.595 Sum_probs=134.9
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCC-----CCcceEEecceeecC-------CCcchhhhccccchhH
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVN-----DKISKTFGFDRVFSQ-------ESKQVDVYKYVVNPLI 146 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~-----~~~~~~f~fD~vF~~-------~a~q~ev~~~~~~~~v 146 (243)
+..||+||++.+|+.....+++.+....++.-.++.+ .+.+|+|.||++|.+ .+.|+.||+.+..-++
T Consensus 7 kVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il 86 (1714)
T KOG0241|consen 7 KVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGIL 86 (1714)
T ss_pred EEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHH
Confidence 4568999999999988888999988877554333221 156899999999976 3679999999999999
Q ss_pred HHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh--cCCceEEEEEEEEEEECCe
Q psy9445 147 DEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL--LGDAEFTVRVSFLEIYNEE 224 (243)
Q Consensus 147 ~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~--~~~~~~~v~~S~~eiyne~ 224 (243)
+.+|+|||+||||||||||||||||+|..+.+ |||||.+..||++|+. .....|+|.|||+|||||+
T Consensus 87 ~naf~GyNaCifaYGQtGsGKsYsmmGt~~Qp-----------GiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEk 155 (1714)
T KOG0241|consen 87 ENAFQGYNACIFAYGQTGSGKSYSMMGTAEQP-----------GIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEK 155 (1714)
T ss_pred HHHhhccceeeEEecccCCCceeEeeccCCCC-----------CchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcc
Confidence 99999999999999999999999999997654 9999999999999987 4566899999999999999
Q ss_pred EEeCCCCCCCCccceecCC
Q psy9445 225 LIDLLSPTDDITKLRLKKN 243 (243)
Q Consensus 225 v~DLL~~~~~~~~l~i~e~ 243 (243)
+||||+|.....-|+++||
T Consensus 156 v~DLLdPk~ssqtlkVreh 174 (1714)
T KOG0241|consen 156 VRDLLDPKGSSQTLKVREH 174 (1714)
T ss_pred hhhhhCCCCCcceeEEeec
Confidence 9999999999999999986
No 16
>KOG0240|consensus
Probab=100.00 E-value=1.9e-35 Score=268.50 Aligned_cols=152 Identities=42% Similarity=0.722 Sum_probs=127.5
Q ss_pred CCCcccCCCcchhhcccceeeeecCC-ceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSS-SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~-~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i 157 (243)
+...|+||.+..|...++..+..+.+ ..++.+.... . .++|.||+||.+.++|.+||+.++.|+|+++|.|||+||
T Consensus 10 kV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~--~-~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTv 86 (607)
T KOG0240|consen 10 KVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK--E-TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTV 86 (607)
T ss_pred EEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc--c-cccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeE
Confidence 35578999999998777766665555 3455444322 2 389999999999999999999999999999999999999
Q ss_pred EEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc-CCceEEEEEEEEEEECCeEEeCCCCCCCCc
Q psy9445 158 FAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDIT 236 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~-~~~~~~v~~S~~eiyne~v~DLL~~~~~~~ 236 (243)
||||||||||||||.|....+ ...|||||++++||..|... ....|.|.|||+|||+|+|+|||+|. ..
T Consensus 87 faYGqT~sGKTytm~G~~~d~--------~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~--k~ 156 (607)
T KOG0240|consen 87 FAYGQTGSGKTYTMEGIGHDP--------EEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE--KT 156 (607)
T ss_pred EEecCCCCCcceeecccCCCh--------hhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc--cC
Confidence 999999999999999986522 23599999999999999874 34589999999999999999999984 57
Q ss_pred cceecCC
Q psy9445 237 KLRLKKN 243 (243)
Q Consensus 237 ~l~i~e~ 243 (243)
+|.|+||
T Consensus 157 nlsvheD 163 (607)
T KOG0240|consen 157 NLSVHED 163 (607)
T ss_pred Cceeecc
Confidence 7888886
No 17
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.8e-34 Score=257.68 Aligned_cols=151 Identities=37% Similarity=0.638 Sum_probs=122.5
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCC--------CCcceEEecceeecCCCcchhhhccccchhHHHHhc
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVN--------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLS 151 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~--------~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~ 151 (243)
..+|+||+...+. . .+.-..++..+.+..+.. ....++|.||+||++ ++|++||+.++.|+|+.+++
T Consensus 4 V~vRvRP~~~~~~---~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~ 78 (334)
T cd01375 4 VFVRVRPTPTKQG---S-SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALD 78 (334)
T ss_pred EEEECCCCCCCCC---c-cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhC
Confidence 5789999887432 1 122234444555444332 245678999999999 99999999999999999999
Q ss_pred CCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCC
Q psy9445 152 GYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSP 231 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~ 231 (243)
|+|+||||||||||||||||+|+... ...+|||||++++||++++...+..|.|++||+|||||+|+|||++
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~--------~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~ 150 (334)
T cd01375 79 GYNGTIFAYGQTGAGKTFTMTGGTES--------YKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGD 150 (334)
T ss_pred CCccceeeecCCCCCCeEEccCCCCc--------ccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCC
Confidence 99999999999999999999997541 1236999999999999999888888999999999999999999999
Q ss_pred CC----CCccceecCC
Q psy9445 232 TD----DITKLRLKKN 243 (243)
Q Consensus 232 ~~----~~~~l~i~e~ 243 (243)
.. ....++|+||
T Consensus 151 ~~~~~~~~~~l~i~e~ 166 (334)
T cd01375 151 TPEALESLPAVTILED 166 (334)
T ss_pred CccccccCCceEEEEc
Confidence 75 3356777765
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.8e-34 Score=256.34 Aligned_cols=153 Identities=39% Similarity=0.691 Sum_probs=125.3
Q ss_pred CCcccCCCcchhhcccceeeeecCCc-eEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSS-REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~-~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
..+|+||+...|...+...++.+.+. ..+.+.+ .+.|.||+||+++++|+++|+..+.|+|+.+++|+|+|||
T Consensus 5 V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 5 VAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred EEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 46799999988876655555544443 3444432 5699999999999999999999999999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCC-ceEEEEEEEEEEECCeEEeCCCCCC-CCc
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTD-DIT 236 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~-~~~~v~~S~~eiyne~v~DLL~~~~-~~~ 236 (243)
|||||||||||||+|+.... ......|||||++++||+.++...+ ..|.|.+||+|||||+|+|||++.. ...
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~-----~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTAS-----EDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred eecCCCCCCcEEecCCCccc-----cccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 99999999999999975321 1234569999999999999987554 6899999999999999999999864 345
Q ss_pred cceecCC
Q psy9445 237 KLRLKKN 243 (243)
Q Consensus 237 ~l~i~e~ 243 (243)
.++|+||
T Consensus 154 ~l~i~e~ 160 (341)
T cd01372 154 PIQIRED 160 (341)
T ss_pred CceEEEC
Confidence 6777765
No 19
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=280.14 Aligned_cols=152 Identities=36% Similarity=0.638 Sum_probs=119.4
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
+..||+||++..|. +...++. .++..+.+. .++|.||+||++.++|.+||+.++.|+|+.+++|||+|||
T Consensus 101 kV~VRVRPl~~~E~--g~~iV~~-~s~dsl~I~-------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIF 170 (1320)
T PLN03188 101 KVIVRMKPLNKGEE--GEMIVQK-MSNDSLTIN-------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVF 170 (1320)
T ss_pred EEEEEcCCCCCccC--CCeeEEE-cCCCeEEEe-------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceee
Confidence 36789999988763 2333333 344555553 3589999999999999999999999999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc------CCceEEEEEEEEEEECCeEEeCCCCC
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL------GDAEFTVRVSFLEIYNEELIDLLSPT 232 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~------~~~~~~v~~S~~eiyne~v~DLL~~~ 232 (243)
|||||||||||||+|+...... ........|||||++++||..+... ....|.|+|||+|||||+|+|||+|.
T Consensus 171 AYGQTGSGKTYTM~G~~~~~~d-e~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~ 249 (1320)
T PLN03188 171 AYGQTGSGKTYTMWGPANGLLE-EHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPS 249 (1320)
T ss_pred cCCCCCCCCCEeeCCCCCcccc-cccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccc
Confidence 9999999999999997431100 0112345799999999999998742 34579999999999999999999985
Q ss_pred CCCccceecCC
Q psy9445 233 DDITKLRLKKN 243 (243)
Q Consensus 233 ~~~~~l~i~e~ 243 (243)
. ..|+|+||
T Consensus 250 ~--k~L~IRED 258 (1320)
T PLN03188 250 Q--KNLQIRED 258 (1320)
T ss_pred c--CCceEEEc
Confidence 4 45777765
No 20
>KOG0239|consensus
Probab=100.00 E-value=2.8e-34 Score=273.32 Aligned_cols=163 Identities=35% Similarity=0.597 Sum_probs=130.7
Q ss_pred ccchhcccccCCCcc----cCCCcchhhcccceeeeecCCceEEEEecCCCC--CcceEEecceeecCCCcchhhhcccc
Q psy9445 69 GRCITALVEKTPHIP----YRPLNSVERAAKSCSIVDCSSSREITIKERVND--KISKTFGFDRVFSQESKQVDVYKYVV 142 (243)
Q Consensus 69 ~~~i~~l~~~~~~~~----~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~--~~~~~f~fD~vF~~~a~q~ev~~~~~ 142 (243)
.++.|.+.+.+++|| +||+...+.......++..++...+.+..+... ...+.|.||+||+|.++|++||.. +
T Consensus 303 ~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~ 381 (670)
T KOG0239|consen 303 RKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-V 381 (670)
T ss_pred HHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-H
Confidence 466677777777765 899999887654444555554444555444332 223469999999999999999998 6
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEeecC-CCCCCCCCCCCCCCCCchhHHHHHHHHHHHh-cCCceEEEEEEEEEE
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE-KSNDPSISWQDDPLSGIVPRAMNHLFDELRL-LGDAEFTVRVSFLEI 220 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~-~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~-~~~~~~~v~~S~~ei 220 (243)
.|+|+++++|||+||||||||||||||||.|+ +. .+|||||+++.||..+.. ..+|.|.+.+||+||
T Consensus 382 ~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~-----------~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EI 450 (670)
T KOG0239|consen 382 SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPE-----------DPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEI 450 (670)
T ss_pred HHHHHHHhcCcceeEEEecccCCCccccccCCCcc-----------cCCccHHHHHHHHHHHHhhccCceEEeeeehhHH
Confidence 99999999999999999999999999999995 32 249999999999999987 347999999999999
Q ss_pred ECCeEEeCCCCCCCCccceecCC
Q psy9445 221 YNEELIDLLSPTDDITKLRLKKN 243 (243)
Q Consensus 221 yne~v~DLL~~~~~~~~l~i~e~ 243 (243)
|||.|+|||++.....++.|+.|
T Consensus 451 YNe~i~DlL~~~~~~~k~~I~~~ 473 (670)
T KOG0239|consen 451 YNEAIRDLLSDESYVGKLEIVDD 473 (670)
T ss_pred HHHHHHHhccccccccceeEEEc
Confidence 99999999988754566776653
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7.7e-34 Score=253.65 Aligned_cols=152 Identities=44% Similarity=0.769 Sum_probs=121.7
Q ss_pred ccCCCcchhhcccceeeeecCC---ceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEE
Q psy9445 83 PYRPLNSVERAAKSCSIVDCSS---SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFA 159 (243)
Q Consensus 83 ~~~~~~~~E~~~~s~~iv~~~~---~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~a 159 (243)
|+||+...|...+...++.... ...............+.|.||+||+++++|.+||+.++.|+|+.+++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 6899999998776665554432 1122222223335678999999999999999999999999999999999999999
Q ss_pred eccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCC---ceEEEEEEEEEEECCeEEeCCCCCC--C
Q psy9445 160 YGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGD---AEFTVRVSFLEIYNEELIDLLSPTD--D 234 (243)
Q Consensus 160 yG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~---~~~~v~~S~~eiyne~v~DLL~~~~--~ 234 (243)
||+|||||||||+|... ...+|||||++++||+.++.... ..|.|++||+|||||+|+|||++.. .
T Consensus 81 yG~tgSGKT~Tm~G~~~---------~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 151 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSND---------PSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKS 151 (335)
T ss_dssp EESTTSSHHHHHTBSTS---------TTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSST
T ss_pred ecccccccccccccccc---------ccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccc
Confidence 99999999999999811 12359999999999999998554 5899999999999999999999984 3
Q ss_pred CccceecCC
Q psy9445 235 ITKLRLKKN 243 (243)
Q Consensus 235 ~~~l~i~e~ 243 (243)
...++|+||
T Consensus 152 ~~~l~i~~~ 160 (335)
T PF00225_consen 152 RKPLKIRED 160 (335)
T ss_dssp TSEBEEEEE
T ss_pred ccccceeec
Confidence 456888764
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=7.4e-33 Score=246.65 Aligned_cols=152 Identities=41% Similarity=0.707 Sum_probs=130.4
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCC--CCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEE
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVN--DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTV 157 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~--~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i 157 (243)
..+|+||+...| ..+...++.+.+++++.+.++.. ...++.|.||+||+++++|+++|+.++.|+|+.+++|+|+||
T Consensus 4 V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i 82 (328)
T cd00106 4 VVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTI 82 (328)
T ss_pred EEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeE
Confidence 468999998877 33445677777778888876542 245789999999999999999999999999999999999999
Q ss_pred EEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcC--CceEEEEEEEEEEECCeEEeCCCCCCCC
Q psy9445 158 FAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTDDI 235 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~--~~~~~v~~S~~eiyne~v~DLL~~~~~~ 235 (243)
||||++||||||||+|+... +|||||++++||+.+.... ...+.|.+||+|||+|+|+|||++....
T Consensus 83 ~~yG~tgSGKT~tl~G~~~~-----------~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~ 151 (328)
T cd00106 83 FAYGQTGSGKTYTMFGSPKD-----------PGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPS 151 (328)
T ss_pred EEecCCCCCCeEEecCCCCC-----------CchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCC
Confidence 99999999999999998643 4999999999999998755 5789999999999999999999997445
Q ss_pred ccceecCC
Q psy9445 236 TKLRLKKN 243 (243)
Q Consensus 236 ~~l~i~e~ 243 (243)
..++|+||
T Consensus 152 ~~l~i~~~ 159 (328)
T cd00106 152 KPLSLRED 159 (328)
T ss_pred CCcEEEEc
Confidence 67777765
No 23
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=9.7e-33 Score=246.14 Aligned_cols=150 Identities=40% Similarity=0.688 Sum_probs=124.3
Q ss_pred CCCcccCCCcchhhcccceeeeecCCc--eEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSS--REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCT 156 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~--~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~ 156 (243)
+..+|+||+...|. .....++.+.+. .++.+... ....+.|.||+||+++++|++||+. +.|+|+.+++|+|+|
T Consensus 5 ~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~ 80 (329)
T cd01366 5 RVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVC 80 (329)
T ss_pred EEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceE
Confidence 35689999988875 333344555555 67777654 2347799999999999999999998 599999999999999
Q ss_pred EEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcC--CceEEEEEEEEEEECCeEEeCCCCCC-
Q psy9445 157 VFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTD- 233 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~--~~~~~v~~S~~eiyne~v~DLL~~~~- 233 (243)
|||||++||||||||+|.... +||+||++++||+.++... +..|.|.+||+|||||+++|||++..
T Consensus 81 i~ayG~tgSGKT~tl~G~~~~-----------~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 149 (329)
T cd01366 81 IFAYGQTGSGKTYTMEGPPEN-----------PGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPA 149 (329)
T ss_pred EEEeCCCCCCCcEEecCCCCC-----------CCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcC
Confidence 999999999999999998643 4999999999999998754 57899999999999999999999864
Q ss_pred CCccceecCC
Q psy9445 234 DITKLRLKKN 243 (243)
Q Consensus 234 ~~~~l~i~e~ 243 (243)
...+++|++|
T Consensus 150 ~~~~l~i~~~ 159 (329)
T cd01366 150 PKKKLEIKHD 159 (329)
T ss_pred CCCceEEEEC
Confidence 3456777764
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.9e-32 Score=244.82 Aligned_cols=151 Identities=44% Similarity=0.774 Sum_probs=129.9
Q ss_pred CCcccCCCcchhhcccceeeeecCCc--eEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEE
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSS--REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTV 157 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~--~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i 157 (243)
..+|+||+...|...+...++.+.+. .++.+.........+.|.||+||+++++|.++|+.++.|+|+.+++|+|+||
T Consensus 4 v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i 83 (335)
T smart00129 4 VVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATI 83 (335)
T ss_pred EEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeE
Confidence 46899999998876666666666554 4777777666667889999999999999999999999999999999999999
Q ss_pred EEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeEEeCCCCCCCCc
Q psy9445 158 FAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDIT 236 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~-~~~~~v~~S~~eiyne~v~DLL~~~~~~~ 236 (243)
||||++||||||||+|+... +||+||++++||+.+.... +..|.|++||+|||+|+++|||++. ..
T Consensus 84 ~~yG~tgSGKT~tl~G~~~~-----------~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~--~~ 150 (335)
T smart00129 84 FAYGQTGSGKTYTMSGTPDS-----------PGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS--PK 150 (335)
T ss_pred EEeCCCCCCCceEecCCCCC-----------CCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC--CC
Confidence 99999999999999997542 4999999999999998643 5689999999999999999999986 35
Q ss_pred cceecCC
Q psy9445 237 KLRLKKN 243 (243)
Q Consensus 237 ~l~i~e~ 243 (243)
.++|+||
T Consensus 151 ~l~i~~~ 157 (335)
T smart00129 151 KLEIRED 157 (335)
T ss_pred CcEEEEC
Confidence 6777664
No 25
>KOG0246|consensus
Probab=99.96 E-value=1.2e-29 Score=230.50 Aligned_cols=156 Identities=33% Similarity=0.535 Sum_probs=134.4
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCCC------CcceEEecceeecCCCcchhhhccccchhHHHHhcCC
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVND------KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY 153 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~------~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~ 153 (243)
.-||-||++..|...+...+|++++...+.++++... -...+|.||++|++.+++++||..++.|+|+.+|+|-
T Consensus 212 VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G 291 (676)
T KOG0246|consen 212 VCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGG 291 (676)
T ss_pred EEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCC
Confidence 3478899999999888889999999998888886543 3567899999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh--cCCceEEEEEEEEEEECCeEEeCCCC
Q psy9445 154 NCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL--LGDAEFTVRVSFLEIYNEELIDLLSP 231 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~--~~~~~~~v~~S~~eiyne~v~DLL~~ 231 (243)
-+|+||||||||||||||.|.-.+. ..+...||.-++.+++|..+.. .....+.|++||+|||+-+|||||++
T Consensus 292 ~ATCFAYGQTGSGKT~TMggdfsgk-----~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 292 MATCFAYGQTGSGKTYTMGGDFSGK-----AQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred ceeeeeeccCCCCceeecccccCcc-----cccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 9999999999999999998864422 1334579999999999999886 34567899999999999999999988
Q ss_pred CCCCccceecCC
Q psy9445 232 TDDITKLRLKKN 243 (243)
Q Consensus 232 ~~~~~~l~i~e~ 243 (243)
+.+|++.||
T Consensus 367 ---k~KLrvLED 375 (676)
T KOG0246|consen 367 ---KKKLRVLED 375 (676)
T ss_pred ---ccceEEeec
Confidence 366777765
No 26
>KOG0243|consensus
Probab=99.94 E-value=7.6e-28 Score=232.68 Aligned_cols=95 Identities=66% Similarity=0.961 Sum_probs=91.1
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||++|||||+||+|+||.+..+..|..+++-|||+||||||||.+.++|+.+.|.+||+.|||||++|||||+||++..+
T Consensus 259 ~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~ 338 (1041)
T KOG0243|consen 259 MNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSG 338 (1041)
T ss_pred hhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCC
Confidence 89999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhccc
Q psy9445 81 HIPYRPLNSVERAAK 95 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~ 95 (243)
|||||.++++.+++.
T Consensus 339 HIPYRESKLTRLLQD 353 (1041)
T KOG0243|consen 339 HIPYRESKLTRLLQD 353 (1041)
T ss_pred CCCchHHHHHHHHHH
Confidence 999999999887553
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.93 E-value=1.4e-26 Score=218.98 Aligned_cols=106 Identities=51% Similarity=0.946 Sum_probs=97.7
Q ss_pred ceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHH
Q psy9445 119 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 198 (243)
Q Consensus 119 ~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~ 198 (243)
..+|.||+||++.++|++||+..+.|+++.++.||||||||||||||||||||.|.... .||||+++++
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~-----------~Gii~~~l~~ 123 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEE-----------PGIIPLSLKE 123 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccc-----------cchHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999998643 4999999999
Q ss_pred HHHHHHhc-CCceEEEEEEEEEEECCeEEeCCCCCCCC
Q psy9445 199 LFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDI 235 (243)
Q Consensus 199 lf~~~~~~-~~~~~~v~~S~~eiyne~v~DLL~~~~~~ 235 (243)
||+.++.. .+..+.|.+||+|||||+++|||.|..+.
T Consensus 124 lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~ 161 (568)
T COG5059 124 LFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES 161 (568)
T ss_pred HHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc
Confidence 99999873 35679999999999999999999987653
No 28
>KOG0247|consensus
Probab=99.92 E-value=7.4e-26 Score=210.92 Aligned_cols=141 Identities=33% Similarity=0.608 Sum_probs=113.0
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecC---------CCCCcceEEecceeecCCCcchhhhccccchhHHHH
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKER---------VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEV 149 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~---------~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~ 149 (243)
....++||+... .+...++.+-+..+|.+..+ ..+...+.|.|.+||++.++|.+||+.++.|+|..+
T Consensus 34 ~v~~rvrP~~~~---~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dl 110 (809)
T KOG0247|consen 34 LVVCRVRPLSDA---SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDL 110 (809)
T ss_pred heeEeecCCCCC---ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHH
Confidence 466788998752 22233344445566665532 122466789999999999999999999999999999
Q ss_pred hcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc-----------------------
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL----------------------- 206 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~----------------------- 206 (243)
+.|.|..+|+||.|||||||||.|++..+ ||+||+++.||..|...
T Consensus 111 Lkgqn~LlFTyGVTgSGKTYTm~G~~~~~-----------GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~a 179 (809)
T KOG0247|consen 111 LKGQNSLLFTYGVTGSGKTYTMTGTPDRP-----------GILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDA 179 (809)
T ss_pred HcccceeEEEeeccCCCceEEeecCCCCC-----------CchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHH
Confidence 99999999999999999999999986643 99999999999766410
Q ss_pred ------------------------------------------CCceEEEEEEEEEEECCeEEeCCCCCC
Q psy9445 207 ------------------------------------------GDAEFTVRVSFLEIYNEELIDLLSPTD 233 (243)
Q Consensus 207 ------------------------------------------~~~~~~v~~S~~eiyne~v~DLL~~~~ 233 (243)
.+..|.|+|||+|||||-|||||.+..
T Consensus 180 lL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s 248 (809)
T KOG0247|consen 180 LLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDAS 248 (809)
T ss_pred HHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhcccc
Confidence 234699999999999999999998764
No 29
>KOG0244|consensus
Probab=99.92 E-value=1.6e-25 Score=213.68 Aligned_cols=146 Identities=36% Similarity=0.662 Sum_probs=123.4
Q ss_pred cCCCcchhhcccceeeeecCCc-eEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEecc
Q psy9445 84 YRPLNSVERAAKSCSIVDCSSS-REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQ 162 (243)
Q Consensus 84 ~~~~~~~E~~~~s~~iv~~~~~-~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~ 162 (243)
+||+...|...++..++.+.++ .+|.+.. ..+|+||++|.....|.++|+.++.|+++.+|+|||+|++||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~------~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQ 74 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK------DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQ 74 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC------CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecc
Confidence 5999999988887777764443 3554432 45899999999999999999999999999999999999999999
Q ss_pred CCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCCccceecC
Q psy9445 163 TGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLKK 242 (243)
Q Consensus 163 tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~~~l~i~e 242 (243)
|||||||||.+...... ...|+|||++..+|..+.......|.|.|||+|||+|.|+|||.|+.....++++|
T Consensus 75 tgsgkTytmgt~~~~~~-------~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e 147 (913)
T KOG0244|consen 75 TGSGKTYTMGTNDAPAQ-------DTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE 147 (913)
T ss_pred cCCCceeeccccccccc-------ccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc
Confidence 99999999977633221 11599999999999999986667899999999999999999999887777777765
No 30
>KOG4280|consensus
Probab=99.91 E-value=2.8e-25 Score=206.20 Aligned_cols=94 Identities=50% Similarity=0.654 Sum_probs=85.1
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||..|||||+||||+|++......+....++|||+|||||||||..++++.|++++||.+||+||++||+||++|++.+.
T Consensus 204 mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~ 283 (574)
T KOG4280|consen 204 MNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSK 283 (574)
T ss_pred CCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhcccc
Confidence 89999999999999998844444566677899999999999999999999999999999999999999999999999876
Q ss_pred -CcccCCCcchhhcc
Q psy9445 81 -HIPYRPLNSVERAA 94 (243)
Q Consensus 81 -~~~~~~~~~~E~~~ 94 (243)
|||||++..+.+++
T Consensus 284 ~HIPYRdSkLT~LLq 298 (574)
T KOG4280|consen 284 THIPYRDSKLTRLLQ 298 (574)
T ss_pred CCCCcchhHHHHHHH
Confidence 99999998876644
No 31
>KOG0240|consensus
Probab=99.89 E-value=1.7e-23 Score=190.75 Aligned_cols=91 Identities=46% Similarity=0.625 Sum_probs=82.2
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-C
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-T 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-~ 79 (243)
||++|||||+||+|+|.+...... ....|||.||||||||++.++|+.|.-+.||.+||+||++||.||++|.++ +
T Consensus 202 mn~~sSRSHsIF~i~VkQ~n~e~~---~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~ 278 (607)
T KOG0240|consen 202 MNEHSSRSHSIFLIHVKQENVEDK---RKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPK 278 (607)
T ss_pred ccccccccceEEEEEEEeccccch---hhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCC
Confidence 899999999999999987654321 245899999999999999999999999999999999999999999999998 7
Q ss_pred CCcccCCCcchhhcc
Q psy9445 80 PHIPYRPLNSVERAA 94 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~ 94 (243)
.|||||+++.+++++
T Consensus 279 shipYRDSKLTRILq 293 (607)
T KOG0240|consen 279 SHIPYRDSKLTRILQ 293 (607)
T ss_pred CCCcchhhHHHHHHH
Confidence 899999999988754
No 32
>KOG0245|consensus
Probab=99.86 E-value=6.1e-23 Score=196.61 Aligned_cols=92 Identities=46% Similarity=0.628 Sum_probs=80.6
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCC-ccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLD-GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~-~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~ 79 (243)
||+.|||||+||||.+.++..... +....++||++|||||||||...+|+.|+|++|+.+|||||.+||+||.||.+..
T Consensus 209 MNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~ 288 (1221)
T KOG0245|consen 209 MNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQ 288 (1221)
T ss_pred cccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHh
Confidence 999999999999999988864433 3445678999999999999999999999999999999999999999999998532
Q ss_pred -------CCcccCCCcchhh
Q psy9445 80 -------PHIPYRPLNSVER 92 (243)
Q Consensus 80 -------~~~~~~~~~~~E~ 92 (243)
..||||++-++.+
T Consensus 289 ~~k~~ks~fIPYRDSVLTWL 308 (1221)
T KOG0245|consen 289 KGKKKKSDFIPYRDSVLTWL 308 (1221)
T ss_pred ccCCCCCccccchHHHHHHH
Confidence 4899999977655
No 33
>KOG0247|consensus
Probab=99.85 E-value=7.1e-22 Score=184.51 Aligned_cols=91 Identities=45% Similarity=0.656 Sum_probs=80.0
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc--
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-- 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-- 78 (243)
+|+.|||||+||+|.|.+..... +......+.|.|||||||||..++++.|.|++||++||+||++||+||.+|.++
T Consensus 301 lN~~SSRSHsVFtIkl~q~~~~~-~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk 379 (809)
T KOG0247|consen 301 LNANSSRSHSVFTIKLVQAPRSQ-DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQK 379 (809)
T ss_pred ccccccccceeEEEEeeeccccc-ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhh
Confidence 59999999999999998765442 334556899999999999999999999999999999999999999999999854
Q ss_pred ---CCCcccCCCcchhh
Q psy9445 79 ---TPHIPYRPLNSVER 92 (243)
Q Consensus 79 ---~~~~~~~~~~~~E~ 92 (243)
..+||||+++.+..
T Consensus 380 ~ks~~~VPyRdSKLThl 396 (809)
T KOG0247|consen 380 SKSQKIVPYRDSKLTHL 396 (809)
T ss_pred hhccccCcchHHHHHHH
Confidence 37899999988765
No 34
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.84 E-value=1.9e-21 Score=160.20 Aligned_cols=96 Identities=48% Similarity=0.661 Sum_probs=84.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||..|||||+||+|++........+......++|+||||||||+..++++.+++++|+..||+||++|++||++|.++..
T Consensus 76 ~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~ 155 (186)
T cd01363 76 MNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDS 155 (186)
T ss_pred CCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 69999999999999998776544333445679999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||+++.+.++..+
T Consensus 156 ~vpyr~SkLT~lL~~~ 171 (186)
T cd01363 156 HVPYRESKLTRLLQDS 171 (186)
T ss_pred CCCCcccHHHHHHHHh
Confidence 9999999998876543
No 35
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.84 E-value=4.3e-21 Score=171.72 Aligned_cols=95 Identities=48% Similarity=0.629 Sum_probs=81.4
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccc---
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--- 77 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~--- 77 (243)
||.+|||||+||+|+|........ ......|+|+|||||||||..++++.+.+++|+.+||+||++|++||++|.+
T Consensus 203 ~n~~SSRSH~i~~i~v~~~~~~~~-~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~ 281 (337)
T cd01373 203 MNSESSRSHAVFTCTIESWEKKAS-STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAH 281 (337)
T ss_pred CCCCCCCccEEEEEEEEEeecCCC-CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhcc
Confidence 799999999999999986543322 1234579999999999999999999999999999999999999999999974
Q ss_pred -cCCCcccCCCcchhhcccc
Q psy9445 78 -KTPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 78 -~~~~~~~~~~~~~E~~~~s 96 (243)
+..|||||+++++.++..+
T Consensus 282 ~~~~~ipyR~SkLT~lL~ds 301 (337)
T cd01373 282 GKQRHVPYRDSKLTFLLRDS 301 (337)
T ss_pred CCCCccCCcccHHHHHHHHh
Confidence 3689999999998876543
No 36
>KOG0239|consensus
Probab=99.83 E-value=2.2e-21 Score=185.30 Aligned_cols=93 Identities=47% Similarity=0.668 Sum_probs=82.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||++|||||+||+|+|...+. ..+ ....|+|+|||||||||+.+++++|+|++|+.+||+||++||+||.+|..+..
T Consensus 512 ~Ne~SSRSH~v~~v~v~g~~~-~t~--~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~ 588 (670)
T KOG0239|consen 512 SNERSSRSHLVFRVRIRGINE-LTG--IRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRS 588 (670)
T ss_pred cchhhhccceEEEEEEecccc-Ccc--cccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCC
Confidence 799999999999999975532 222 23479999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||+++.+.+++.+
T Consensus 589 HiPyRNSKLT~lLq~s 604 (670)
T KOG0239|consen 589 HIPYRNSKLTQLLQDS 604 (670)
T ss_pred CCcccccchHHHhHhh
Confidence 9999999999987654
No 37
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.83 E-value=6.2e-21 Score=170.74 Aligned_cols=96 Identities=45% Similarity=0.677 Sum_probs=84.2
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
||.+|||||+||+|+|...............|+|+|||||||||..++++.+.+++|+.+||+||++|++||++|.+..
T Consensus 204 ~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~ 283 (338)
T cd01370 204 ANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKK 283 (338)
T ss_pred ccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccC
Confidence 7999999999999999877644222334567999999999999999999999999999999999999999999999887
Q ss_pred --CCcccCCCcchhhcccc
Q psy9445 80 --PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 --~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++.+.++..+
T Consensus 284 ~~~~ipyR~SkLT~lL~d~ 302 (338)
T cd01370 284 KNKHIPYRDSKLTRLLKDS 302 (338)
T ss_pred CCCcCCCcCCHHHHHHHHh
Confidence 89999999998876543
No 38
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.82 E-value=1.3e-20 Score=169.12 Aligned_cols=96 Identities=42% Similarity=0.651 Sum_probs=81.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCc-----cceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcc
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDG-----EELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 75 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~-----~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l 75 (243)
||.+|||||+||+|+|........+ ......++|+|||||||||..++++.+.+++|+..||+||++|++||++|
T Consensus 205 ~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL 284 (345)
T cd01368 205 LNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVL 284 (345)
T ss_pred CcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 6999999999999999866433211 12345799999999999999999999999999999999999999999999
Q ss_pred cc------cCCCcccCCCcchhhcccc
Q psy9445 76 VE------KTPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 76 ~~------~~~~~~~~~~~~~E~~~~s 96 (243)
.+ ...|||||+++++.++..+
T Consensus 285 ~~~~~~~~~~~~iPyR~SkLT~lL~~~ 311 (345)
T cd01368 285 RENQLSGSTNKMVPYRDSKLTHLFQNY 311 (345)
T ss_pred HhhhcccCCCCcCCCcCCHHHHHHHHh
Confidence 86 4689999999998876543
No 39
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.82 E-value=1.1e-20 Score=185.29 Aligned_cols=94 Identities=47% Similarity=0.638 Sum_probs=80.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCC-CCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccc--
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNS-LDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-- 77 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~-~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~-- 77 (243)
||..|||||+||+|+|...... ..+....+.|+|+|||||||||..++++.|.+++|+.+||+||++|++||++|.+
T Consensus 297 mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~S 376 (1320)
T PLN03188 297 INAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEIS 376 (1320)
T ss_pred CCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 7999999999999999765332 2233345679999999999999999999999999999999999999999999975
Q ss_pred ---cCCCcccCCCcchhhcc
Q psy9445 78 ---KTPHIPYRPLNSVERAA 94 (243)
Q Consensus 78 ---~~~~~~~~~~~~~E~~~ 94 (243)
+..|||||+++++.++.
T Consensus 377 q~gk~~HIPYRDSKLTrLLQ 396 (1320)
T PLN03188 377 QTGKQRHIPYRDSRLTFLLQ 396 (1320)
T ss_pred ccCCCCcCCCCcchHHHHHH
Confidence 34799999999988754
No 40
>KOG0242|consensus
Probab=99.82 E-value=3.4e-21 Score=184.55 Aligned_cols=91 Identities=43% Similarity=0.646 Sum_probs=81.5
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc--
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-- 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-- 78 (243)
||..|||||+||+|.|..+..... . ..++|+|||||||||..+|++.|.|++|+.+||+||++||.||++|.++
T Consensus 202 ~N~~SSRSHaIl~i~i~s~~~~~~--~--~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~ 277 (675)
T KOG0242|consen 202 LNEQSSRSHAILRITVESRGREAS--S--RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKR 277 (675)
T ss_pred cccccchhhheeeEEEEecccccc--c--hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccc
Confidence 799999999999999987764433 1 5789999999999999999999999999999999999999999999987
Q ss_pred CCCcccCCCcchhhccc
Q psy9445 79 TPHIPYRPLNSVERAAK 95 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~ 95 (243)
..|||||+++++.+++.
T Consensus 278 ~~hipYRDSKLTRiLq~ 294 (675)
T KOG0242|consen 278 PRHIPYRDSKLTRLLQD 294 (675)
T ss_pred cCCCCccccHHHHhchh
Confidence 56899999999887553
No 41
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.80 E-value=9.1e-20 Score=164.12 Aligned_cols=96 Identities=72% Similarity=1.048 Sum_probs=85.6
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
+|..|||||+||+|+|.+......+......|+|+||||||||+..++++.+.+.+|+..||+||.+|++||++|.++..
T Consensus 212 ~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~ 291 (352)
T cd01364 212 MNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSP 291 (352)
T ss_pred CCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCC
Confidence 68999999999999998876554445555679999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||.++.+.++...
T Consensus 292 ~vpyR~S~LT~lL~~~ 307 (352)
T cd01364 292 HIPYRESKLTRLLQDS 307 (352)
T ss_pred CCCCcccHHHHHHHHh
Confidence 9999999998875543
No 42
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.79 E-value=1.9e-19 Score=160.90 Aligned_cols=95 Identities=52% Similarity=0.732 Sum_probs=83.4
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
+|.+|||||+||+|+|........+......|+|+|||||||||..+++..+.+++|+..||+||.+|++||++|.+.+.
T Consensus 201 ~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~ 280 (333)
T cd01371 201 MNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKS 280 (333)
T ss_pred ccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCC
Confidence 58999999999999998765443334455689999999999999999999999999999999999999999999998775
Q ss_pred -CcccCCCcchhhccc
Q psy9445 81 -HIPYRPLNSVERAAK 95 (243)
Q Consensus 81 -~~~~~~~~~~E~~~~ 95 (243)
|||||+++.+.++..
T Consensus 281 ~~ipyR~SkLT~lL~~ 296 (333)
T cd01371 281 THIPYRDSKLTRLLQD 296 (333)
T ss_pred CcCCCccCHHHHHHHH
Confidence 999999999887653
No 43
>KOG0246|consensus
Probab=99.78 E-value=1.3e-19 Score=165.53 Aligned_cols=90 Identities=34% Similarity=0.533 Sum_probs=75.2
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCc-hhHHHHhhcchhHHhhhcccchhcccccC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGA-QDKRAREAGNINQSLLTLGRCITALVEKT 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~-~~~~~~E~~~iN~SL~~l~~~i~~l~~~~ 79 (243)
.|++||||||||+|.+.... ++. -+||++||||||+||...+.. +.+...|+..|||||++|+.||++|...+
T Consensus 414 ANs~SSRSHAvfQIilr~~~----~~k--~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk 487 (676)
T KOG0246|consen 414 ANSNSSRSHAVFQIILRKHG----EFK--LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK 487 (676)
T ss_pred CcccccccceeEeeeeecCC----cce--eEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC
Confidence 49999999999999775321 112 379999999999999987765 44566699999999999999999999999
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|+|||-+++++.+..+
T Consensus 488 ~H~PFR~SKLTqVLRDS 504 (676)
T KOG0246|consen 488 SHLPFRGSKLTQVLRDS 504 (676)
T ss_pred CCCCchhhhHHHHHHHh
Confidence 99999999998875543
No 44
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.78 E-value=4.9e-19 Score=158.32 Aligned_cols=95 Identities=44% Similarity=0.616 Sum_probs=83.3
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
+|..|||||+||+|+|......... .....++|+|||||||||..++++.+..++|+..||+||++|++||++|.++.
T Consensus 205 ~n~~sSRSH~i~~l~v~~~~~~~~~-~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~ 283 (334)
T cd01375 205 MNQASSRSHCIFTIHLESRSREAGS-EVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKAR 283 (334)
T ss_pred CcCCcCcCeEEEEEEEEEEecCCCC-CceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCC
Confidence 6899999999999999877443332 23457999999999999999999999999999999999999999999999988
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||++..+.++..+
T Consensus 284 ~~ipyRdSkLT~lL~d~ 300 (334)
T cd01375 284 THVPYRNSKLTHVLRDS 300 (334)
T ss_pred CCCCCcccHHHHHHHHh
Confidence 99999999998876543
No 45
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.77 E-value=5.3e-19 Score=157.15 Aligned_cols=91 Identities=38% Similarity=0.595 Sum_probs=81.2
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
+|..|||||+||+|+|.+.... ....|+|+||||||||+..+++.++.+.+|+..||+||++|++||++|..+..
T Consensus 195 ~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~ 269 (319)
T cd01376 195 LNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLP 269 (319)
T ss_pred CCCccCCCeEEEEEEEEEECCC-----ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCC
Confidence 6899999999999999776432 13579999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||++..+.++..+
T Consensus 270 ~ipyr~S~LT~lL~~~ 285 (319)
T cd01376 270 RIPYRESKLTRLLQDS 285 (319)
T ss_pred cCCCccCHHHHHHHHh
Confidence 9999999988775543
No 46
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.77 E-value=6.6e-19 Score=156.71 Aligned_cols=90 Identities=37% Similarity=0.529 Sum_probs=79.0
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCC-chhHHHHhhcchhHHhhhcccchhcccccC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSG-AQDKRAREAGNINQSLLTLGRCITALVEKT 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~-~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~ 79 (243)
||..|||||+||+|+|..... ....|+|+|||||||||..+++ ..+++.+|+.+||+||++|++||++|.+..
T Consensus 198 ~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~ 271 (322)
T cd01367 198 ANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK 271 (322)
T ss_pred CCCCcccceEEEEEEEEEecC------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC
Confidence 799999999999999976543 2347999999999999998765 467899999999999999999999999999
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++.+.++..+
T Consensus 272 ~~iPyRdSkLT~lL~~~ 288 (322)
T cd01367 272 AHVPFRGSKLTQVLRDS 288 (322)
T ss_pred CcCCCccCHHHHHHHHh
Confidence 99999999998875543
No 47
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.76 E-value=1.2e-18 Score=156.96 Aligned_cols=96 Identities=41% Similarity=0.569 Sum_probs=81.4
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCC-ccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLD-GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK- 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~-~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~- 78 (243)
||..|||||+||+|+|........ .......++|+|||||||||..+++..+.+++|+..||+||++|++||.+|.+.
T Consensus 209 ~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~ 288 (356)
T cd01365 209 MNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNS 288 (356)
T ss_pred CCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 699999999999999987643321 123345799999999999999999999999999999999999999999999753
Q ss_pred -------CCCcccCCCcchhhcccc
Q psy9445 79 -------TPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 79 -------~~~~~~~~~~~~E~~~~s 96 (243)
..|||||+++.+.++..+
T Consensus 289 ~~~~~~~~~~ipyR~SkLT~lL~~~ 313 (356)
T cd01365 289 SAKSKKKSSFIPYRDSVLTWLLKEN 313 (356)
T ss_pred cccccCCCCcCCCcCcHHHHHHHHh
Confidence 489999999998875543
No 48
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.76 E-value=1.1e-18 Score=155.27 Aligned_cols=95 Identities=43% Similarity=0.613 Sum_probs=81.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
+|.+|||||+||+|+|...............++|+|||||||||..+.+ .+.+++|+..||+||++|++||++|.+..
T Consensus 189 ~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~ 267 (321)
T cd01374 189 FNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKN 267 (321)
T ss_pred CCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCC
Confidence 6899999999999999876543322234457999999999999999988 88999999999999999999999999885
Q ss_pred -CCcccCCCcchhhcccc
Q psy9445 80 -PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 -~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++.+.++..+
T Consensus 268 ~~~vpyR~SkLT~lL~~~ 285 (321)
T cd01374 268 SGHIPYRDSKLTRILQPS 285 (321)
T ss_pred CCcCCCcCCHHHHHHHHh
Confidence 99999999998876543
No 49
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.75 E-value=1.7e-18 Score=154.33 Aligned_cols=93 Identities=44% Similarity=0.622 Sum_probs=81.6
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
+|.+|||||+||+|+|.+...... ....|+|+||||||||+..++++++.+.+|+..||+||++|++||++|.++.
T Consensus 196 ~n~~ssRSH~i~~i~v~~~~~~~~---~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~ 272 (325)
T cd01369 196 MNEESSRSHSIFLITLKQENVETG---SKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKS 272 (325)
T ss_pred CCCccccccEEEEEEEEEEecCCC---CEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 689999999999999987653221 2357999999999999999999999999999999999999999999999887
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++.+.++..+
T Consensus 273 ~~vpyR~S~LT~lL~~~ 289 (325)
T cd01369 273 THIPYRDSKLTRILQDS 289 (325)
T ss_pred CcCCCccCHHHHHHHHh
Confidence 99999999998876543
No 50
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.75 E-value=2.6e-18 Score=153.99 Aligned_cols=96 Identities=42% Similarity=0.610 Sum_probs=82.1
Q ss_pred CCCCCCcceEEEEEEEEEEeCCC-------CccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchh
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSL-------DGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCIT 73 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~-------~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~ 73 (243)
+|.+|||||+||+|+|.+..... +.......|+|+||||||||+..++++++.+++|+..||+||.+|++||+
T Consensus 199 ~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~ 278 (341)
T cd01372 199 MNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVIS 278 (341)
T ss_pred CCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHH
Confidence 68999999999999998765421 11223457999999999999999999999999999999999999999999
Q ss_pred cccccC---CCcccCCCcchhhcccc
Q psy9445 74 ALVEKT---PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 74 ~l~~~~---~~~~~~~~~~~E~~~~s 96 (243)
+|.... .|||||.++.+.++..+
T Consensus 279 al~~~~~~~~~ipyR~S~LT~lL~~~ 304 (341)
T cd01372 279 ALGDESKKGSHVPYRDSKLTRLLQDS 304 (341)
T ss_pred HHHhcCCCCCCCCCcccHHHHHHHHh
Confidence 999775 79999999998876543
No 51
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.73 E-value=7.6e-19 Score=166.46 Aligned_cols=184 Identities=35% Similarity=0.464 Sum_probs=131.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccc--c
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--K 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~--~ 78 (243)
||+.|||||+||++++....... .....++++||||||||+..+++..+.+++|+..||+||.+||+||++|.+ +
T Consensus 206 ~n~~ssRshsi~~i~~~~~~~~~---~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~ 282 (568)
T COG5059 206 INDESSRSHSIFQIELASKNKVS---GTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKK 282 (568)
T ss_pred hccccccceEEEEEEEEEeccCc---cceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhcccc
Confidence 68899999999999997765332 223347999999999999999999999999999999999999999999997 7
Q ss_pred CCCcccCCCcchhhcc----cc---eeeeecCCce-----------------EEEEecCCC-----CCcceEEecceeec
Q psy9445 79 TPHIPYRPLNSVERAA----KS---CSIVDCSSSR-----------------EITIKERVN-----DKISKTFGFDRVFS 129 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~----~s---~~iv~~~~~~-----------------ti~v~~~~~-----~~~~~~f~fD~vF~ 129 (243)
..|||||.+..+.++. +. +.++.+.+.. .|......+ ......|.||..|.
T Consensus 283 ~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~ 362 (568)
T COG5059 283 SGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSED 362 (568)
T ss_pred CCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhh
Confidence 8999999999887643 21 1122222210 000000001 11223578888888
Q ss_pred CCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh
Q psy9445 130 QESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 130 ~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~ 205 (243)
....+..++.. ....++..++| +++|++++++++++|.-.. .+++.-.+...|.....
T Consensus 363 ~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 420 (568)
T COG5059 363 RSEIEILVFRE-QSQLSQSSLSG----IFAYMQSLKKETETLKSRI-------------DLIMKSIISGTFERKKL 420 (568)
T ss_pred hhhhhhHHHHH-HHhhhhhhhhh----HHHHHhhhhhhhhcccchh-------------hhhhhhhhhhhhhhhhh
Confidence 88877777765 35567777777 8999999999999995431 25555555666655543
No 52
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.73 E-value=8e-18 Score=150.16 Aligned_cols=93 Identities=46% Similarity=0.624 Sum_probs=82.1
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
+|.+|||||+||+|+|...... ......|+|+||||||||+..++++.+.+++|+..||+||.+|++||++|..+..
T Consensus 198 ~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~ 274 (329)
T cd01366 198 MNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDS 274 (329)
T ss_pred ccCCCCCccEEEEEEEEEEcCC---CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCC
Confidence 5899999999999999876432 1223579999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||.+..+.++...
T Consensus 275 ~ipyr~S~LT~lL~~~ 290 (329)
T cd01366 275 HVPYRNSKLTYLLQDS 290 (329)
T ss_pred cCCCcccHhHHHHHHh
Confidence 9999999998876543
No 53
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.70 E-value=2.6e-17 Score=147.11 Aligned_cols=96 Identities=45% Similarity=0.671 Sum_probs=82.8
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccc-eeeeceEEEEecccCccccCCCch-hHHHHhhcchhHHhhhcccchhccccc
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEE-LLRTGKLNLVDLAGSENIGRSGAQ-DKRAREAGNINQSLLTLGRCITALVEK 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~-~~~~~~l~lvDLaGse~~~~~~~~-~~~~~E~~~iN~SL~~l~~~i~~l~~~ 78 (243)
+|..|||||+||+|+|+.......... ....|+|+||||||||+..++++. +.+.+|+..||+||.+|++||.+|...
T Consensus 200 ~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~ 279 (335)
T PF00225_consen 200 MNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQG 279 (335)
T ss_dssp CTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhhhcc
Confidence 588999999999999998875543321 245799999999999999988874 788999999999999999999999998
Q ss_pred --CCCcccCCCcchhhcccc
Q psy9445 79 --TPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 79 --~~~~~~~~~~~~E~~~~s 96 (243)
..|||||.++.+.++..+
T Consensus 280 ~~~~~vpyr~SkLT~lL~d~ 299 (335)
T PF00225_consen 280 SKQSHVPYRDSKLTRLLKDS 299 (335)
T ss_dssp TSTSSSCGGGSHHHHHTGGG
T ss_pred ccchhhhhhcccccceeccc
Confidence 899999999998876543
No 54
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.66 E-value=1.7e-16 Score=141.51 Aligned_cols=94 Identities=47% Similarity=0.690 Sum_probs=81.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
+|..|||||+||+|+|.......... ....++|+||||||||+..+++..+.+.+|+..||+||.+|++|+.++....
T Consensus 198 ~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~ 276 (328)
T cd00106 198 MNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQK 276 (328)
T ss_pred CCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCC
Confidence 58899999999999998776433211 2357999999999999999999999999999999999999999999999888
Q ss_pred -CCcccCCCcchhhccc
Q psy9445 80 -PHIPYRPLNSVERAAK 95 (243)
Q Consensus 80 -~~~~~~~~~~~E~~~~ 95 (243)
.|||||.++.+.++..
T Consensus 277 ~~~ip~r~SkLT~lL~~ 293 (328)
T cd00106 277 KKHIPYRDSKLTRLLQD 293 (328)
T ss_pred CCcCCCcCcHHHHHHHH
Confidence 9999999999887653
No 55
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.66 E-value=2.1e-16 Score=141.37 Aligned_cols=95 Identities=48% Similarity=0.670 Sum_probs=81.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccc--c
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--K 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~--~ 78 (243)
+|..|||||+||+|+|....... .......++|+||||||||+..+.++.+.+++|+..||+||.+|++|++++.+ .
T Consensus 196 ~n~~ssRsH~i~~l~v~~~~~~~-~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~ 274 (335)
T smart00129 196 MNEESSRSHAVFTITVESKIKNS-SSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQK 274 (335)
T ss_pred CCCCCCcceEEEEEEEEEEecCC-CCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCC
Confidence 68999999999999998663322 22334579999999999999999999999999999999999999999999998 5
Q ss_pred CCCcccCCCcchhhcccc
Q psy9445 79 TPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s 96 (243)
..|+|||.+..+.++...
T Consensus 275 ~~~ip~r~S~LT~lL~~~ 292 (335)
T smart00129 275 SRHIPYRDSKLTRLLQDS 292 (335)
T ss_pred CCCCCCcCcHhHHHHHHH
Confidence 679999999998876544
No 56
>KOG0241|consensus
Probab=99.65 E-value=8.5e-17 Score=153.40 Aligned_cols=93 Identities=40% Similarity=0.551 Sum_probs=78.4
Q ss_pred CCCCCCcceEEEEEEEEEEeCC-CCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNS-LDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK- 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~-~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~- 78 (243)
||+.|||||++|.|.|.+.--+ ..+....+.+||.|||||||||..++++.+.+++|+++||+||.+||.||.+|.+.
T Consensus 213 mn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~ 292 (1714)
T KOG0241|consen 213 MNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQK 292 (1714)
T ss_pred ccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhh
Confidence 8999999999999988765222 22333445799999999999999999999999999999999999999999999863
Q ss_pred -----CCCcccCCCcchhhc
Q psy9445 79 -----TPHIPYRPLNSVERA 93 (243)
Q Consensus 79 -----~~~~~~~~~~~~E~~ 93 (243)
.+.||||++-.+.++
T Consensus 293 n~kgkdKfvPYrDSVLTwLL 312 (1714)
T KOG0241|consen 293 NGKGKDKFVPYRDSVLTWLL 312 (1714)
T ss_pred cCCCccccccchhHHHHHHH
Confidence 358999998776653
No 57
>KOG0244|consensus
Probab=99.65 E-value=1.6e-18 Score=166.10 Aligned_cols=90 Identities=44% Similarity=0.592 Sum_probs=77.0
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||+.|||||+||||.+.+..... ......+||+|||||||||.++|++.|.+++|+.+||..|++||+||.+|.+.+.
T Consensus 186 MN~qssRshAifti~lkq~kk~~--~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk 263 (913)
T KOG0244|consen 186 MNAQSSRSHAIFTITLKQRKKLS--KRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK 263 (913)
T ss_pred cchhhhhhhHHHHHHHHHHHHhh--ccchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc
Confidence 89999999999999886532211 1112358999999999999999999999999999999999999999999987654
Q ss_pred --CcccCCCcchhh
Q psy9445 81 --HIPYRPLNSVER 92 (243)
Q Consensus 81 --~~~~~~~~~~E~ 92 (243)
|||||++..+.+
T Consensus 264 ~~~vpyRdSkltrl 277 (913)
T KOG0244|consen 264 GGEVPYRDSKLTRL 277 (913)
T ss_pred CCcccchHHHHHHH
Confidence 999999887655
No 58
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.55 E-value=4.8e-15 Score=122.03 Aligned_cols=57 Identities=47% Similarity=0.939 Sum_probs=51.4
Q ss_pred hhccccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh
Q psy9445 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 137 v~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~ 205 (243)
+|+.+. |+|+.+++|+|+||||||||||||||||+|.... +||+||+++++++.++.
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~-----------~Giip~~~~~~~~ll~~ 64 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREG-----------AGIIPRTVTDVIDLMDK 64 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCC-----------CCcchHHHHHHHHHHhh
Confidence 899988 9999999999999999999999999999998542 49999999988777664
No 59
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.54 E-value=0.024 Score=53.40 Aligned_cols=93 Identities=23% Similarity=0.387 Sum_probs=59.3
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCch----hHHH
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV----PRAM 196 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii----~r~~ 196 (243)
.|..-.-|.|.-.|.+- +..+++.+-.|..-- .-.|.|||||||||----..-. .+-|+ .-.+
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~--------rPtLV~AhNKTLA 70 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQ--------RPTLVLAHNKTLA 70 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhC--------CCeEEEecchhHH
Confidence 45555667787777653 455777776665433 3469999999999954211000 00111 1245
Q ss_pred HHHHHHHHh-cCCceEEEEEEEEEEECCeEE
Q psy9445 197 NHLFDELRL-LGDAEFTVRVSFLEIYNEELI 226 (243)
Q Consensus 197 ~~lf~~~~~-~~~~~~~v~~S~~eiyne~v~ 226 (243)
.+||..+++ .++..+.-.|||+..|.-+-|
T Consensus 71 aQLy~Efk~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 71 AQLYSEFKEFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHHHHHHhCcCcceEEEeeeccccCcccc
Confidence 678887777 566678899999999976543
No 60
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.34 E-value=0.021 Score=50.30 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=28.0
Q ss_pred cchhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 142 ~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+.|++..+.+--++.|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 5678888889999999999999999999983
No 61
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.56 E-value=0.033 Score=46.89 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=28.9
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.|+||..+.. ..+...+.. +..+.+.--..+| .++-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~g-~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVVG-ESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS--T-TTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCccccCCcC-CcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 6888866543 345555543 2333333111234 478899999999997755
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=92.39 E-value=0.074 Score=44.99 Aligned_cols=47 Identities=11% Similarity=0.270 Sum_probs=30.1
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.++||..+.... ... +.-+....-..++..++-||++|+||||-+..
T Consensus 12 ~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 12 DETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred cccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 567777775432 111 11122333346777889999999999998865
No 63
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.69 E-value=0.077 Score=49.77 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=25.3
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+..++..-++-|+.-|+||||||.||+.
T Consensus 249 ~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 249 RLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 45567788889999999999999999976
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.77 E-value=0.14 Score=45.94 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=20.8
Q ss_pred hHHHHhc-CCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLS-GYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~-G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+..++. +....++.||++|+|||+++.
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 3444444 455679999999999999883
No 65
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=88.83 E-value=0.19 Score=45.67 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=20.2
Q ss_pred hHHHHhc-CCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLS-GYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~-G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+...+. +....++-||++|+|||+++.
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 3444444 445668899999999999874
No 66
>PRK06526 transposase; Provisional
Probab=88.67 E-value=0.26 Score=42.50 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=15.8
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.|+.+|++|+||||...+
T Consensus 100 nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred eEEEEeCCCCchHHHHHH
Confidence 378999999999999864
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=88.30 E-value=0.2 Score=37.51 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=18.0
Q ss_pred HHhcCCceEEEEeccCCCCcceEee
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+.......++.+|++|+|||+.+.
T Consensus 13 ~~~~~~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 13 ALELPPPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred HHhCCCCCeEEEECCCCCCHHHHHH
Confidence 3333345568889999999997663
No 68
>PRK12377 putative replication protein; Provisional
Probab=88.21 E-value=0.3 Score=42.07 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=31.4
Q ss_pred EecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+||-.......|..++.. +..+++.+..+. ..++-+|++|+||||.+..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3566433333444445543 355565555543 4688999999999999865
No 69
>PRK09087 hypothetical protein; Validated
Probab=88.10 E-value=0.3 Score=41.33 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=30.0
Q ss_pred eEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 120 ~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
..|+||..+...++ ...|.. ++....-.+..++-||++||||||-+..
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHHH
Confidence 35678766654333 335553 2222222345589999999999998865
No 70
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.92 E-value=0.21 Score=48.39 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=31.6
Q ss_pred eEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 120 ~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
..|+||..+.... +...|.. +..+++..-..+|. ||-||.+|+||||-+..
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4578886554333 3334433 23334332335665 89999999999999865
No 71
>PRK05642 DNA replication initiation factor; Validated
Probab=87.63 E-value=0.3 Score=41.47 Aligned_cols=19 Identities=16% Similarity=0.684 Sum_probs=16.4
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
..++-||.+|+||||-+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4678999999999998765
No 72
>PRK08116 hypothetical protein; Validated
Probab=87.56 E-value=0.22 Score=43.31 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=31.4
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhc--CCceEEEEeccCCCCcceEeec
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLS--GYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~--G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.++||-.. ....+...+.. +...++.+.. ..+..++-||.+|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 34555332 33444445543 3555555443 3355699999999999999865
No 73
>PF13245 AAA_19: Part of AAA domain
Probab=87.54 E-value=0.25 Score=34.44 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=17.5
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
|..++. -+..+..-|..|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 344444 233344589999999988753
No 74
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=87.06 E-value=0.2 Score=42.00 Aligned_cols=16 Identities=38% Similarity=0.715 Sum_probs=13.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
-+..+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3456899999999998
No 75
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=86.94 E-value=0.22 Score=46.42 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=29.4
Q ss_pred ceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 119 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 119 ~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
...|+||-.... ..+...|..+ ..+.+.--..+| .++-||++|+||||.+..
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCcccccccC-CCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 346777754322 3344444432 223322112234 488899999999999854
No 76
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=86.93 E-value=0.18 Score=47.04 Aligned_cols=50 Identities=22% Similarity=0.398 Sum_probs=31.0
Q ss_pred eEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 120 ~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
..|+||..... ..+...|..+ ..+.+. -..+|. ++-||++|+||||-+..
T Consensus 100 ~~~tFdnFv~g-~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 100 PDYTFENFVVG-PGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCcccccccC-CchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 46788866543 3444455442 222222 112564 99999999999999864
No 77
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=86.75 E-value=0.27 Score=44.74 Aligned_cols=27 Identities=41% Similarity=0.666 Sum_probs=19.5
Q ss_pred HHHHhcCC-ceEEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGY-NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~-n~~i~ayG~tgsGKt~Tm~ 172 (243)
+..++.|. ...++.||.+|||||.|+.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHH
Confidence 44445443 4449999999999998873
No 78
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.66 E-value=0.45 Score=41.54 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=24.5
Q ss_pred cchhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 142 ~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+.++++.+.--..+.|+..|.|||||+.||
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 456677766667788999999999999987
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.58 E-value=0.46 Score=40.31 Aligned_cols=47 Identities=6% Similarity=0.232 Sum_probs=28.2
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.++||..+.. .+...+... ..+. .......++-||++|+||||.+..
T Consensus 18 ~~~fd~f~~~--~n~~a~~~l-~~~~---~~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 18 DETFASFYPG--DNDSLLAAL-QNAL---RQEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred cCCccccccC--ccHHHHHHH-HHHH---hCCCCCeEEEECCCCCCHHHHHHH
Confidence 5667754433 444454432 2222 122234789999999999999864
No 80
>PRK10436 hypothetical protein; Provisional
Probab=86.44 E-value=0.28 Score=46.03 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=22.4
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+..++..-.+.|+.-|+||||||.||+
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 445566677889999999999999995
No 81
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=86.43 E-value=0.24 Score=36.72 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.3
Q ss_pred EEEeccCCCCcceEeecC
Q psy9445 157 VFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G~ 174 (243)
++.+|.+|+|||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 567899999999998764
No 82
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=86.17 E-value=0.26 Score=45.24 Aligned_cols=52 Identities=21% Similarity=0.350 Sum_probs=29.2
Q ss_pred ceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 119 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 119 ~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
...|+||.... ...+...|.. +..+.+.--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 34678876432 2334444433 2223322111233 478899999999999854
No 83
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=86.10 E-value=0.22 Score=37.51 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=12.8
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 356889999999999877
No 84
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=86.07 E-value=0.28 Score=38.83 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.9
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
...++..++||||||++|..
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcChhhhh
Confidence 55667788999999999985
No 85
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.54 E-value=0.47 Score=45.67 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=23.4
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 34556666778899999999999999954
No 86
>PRK08181 transposase; Validated
Probab=85.32 E-value=0.51 Score=41.12 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=16.0
Q ss_pred EEEeccCCCCcceEeecC
Q psy9445 157 VFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G~ 174 (243)
++-||++|+||||-+.+-
T Consensus 109 lll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 109 LLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred EEEEecCCCcHHHHHHHH
Confidence 889999999999988663
No 87
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.22 E-value=0.41 Score=45.22 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=22.5
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+..++..-.+.|+..|+||||||.||..
T Consensus 234 l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 234 FERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 4455666677889999999999999963
No 88
>PRK06620 hypothetical protein; Validated
Probab=85.07 E-value=0.41 Score=40.12 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=31.2
Q ss_pred eEEecceeecCCCcchhhhccccchhHHHHhcCCc---eEEEEeccCCCCcceEeec
Q psy9445 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYN---CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 120 ~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n---~~i~ayG~tgsGKt~Tm~G 173 (243)
..|+||..+...+ +...|..+ ..+.+. -|+| -.++-||++|+||||.+..
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~-~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNII-KNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHH-HHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 3677886665543 34455553 222221 1333 3589999999999999865
No 89
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.85 E-value=0.57 Score=40.23 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=28.5
Q ss_pred EecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+||........|..++.. +...++....+. ..++.+|.+|+||||.+..
T Consensus 69 ~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 4555433222334444443 233344333332 3688999999999998865
No 90
>KOG0989|consensus
Probab=84.80 E-value=0.46 Score=42.13 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=17.8
Q ss_pred HHhcCCceEEEEeccCCCCcceEe
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+---..+-||+.|+|||.|.
T Consensus 51 a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 51 ALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHhhcCCceEEeeCCCCCcHhHHH
Confidence 333434455788999999999986
No 91
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=84.80 E-value=0.97 Score=44.37 Aligned_cols=88 Identities=23% Similarity=0.345 Sum_probs=55.1
Q ss_pred ceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCch----hHHHHHHH
Q psy9445 125 DRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV----PRAMNHLF 200 (243)
Q Consensus 125 D~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii----~r~~~~lf 200 (243)
..-|.|.-.|..-++. +++.+-+|.... ..+|.||||||+||-.--.... .+-|+ ...+.+|+
T Consensus 5 ~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~--------~p~Lvi~~n~~~A~ql~ 71 (655)
T TIGR00631 5 HSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVN--------RPTLVIAHNKTLAAQLY 71 (655)
T ss_pred ccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhC--------CCEEEEECCHHHHHHHH
Confidence 3457777778776654 455555564222 3689999999999865321100 01221 12456777
Q ss_pred HHHHhc-CCceEEEEEEEEEEECCeE
Q psy9445 201 DELRLL-GDAEFTVRVSFLEIYNEEL 225 (243)
Q Consensus 201 ~~~~~~-~~~~~~v~~S~~eiyne~v 225 (243)
+.+... ++..+...|||+..|.-+.
T Consensus 72 ~el~~f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 72 NEFKEFFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred HHHHHhCCCCeEEEEeeecccCCccc
Confidence 777663 4555888999999997764
No 92
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=84.77 E-value=0.32 Score=35.93 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.9
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
..++-+|++|+|||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 3577899999999998854
No 93
>PF12846 AAA_10: AAA-like domain
Probab=84.69 E-value=0.31 Score=41.90 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.0
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999998885
No 94
>PRK08727 hypothetical protein; Validated
Probab=84.45 E-value=0.41 Score=40.57 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=16.5
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
-.++-||++|+||||-+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4599999999999998865
No 95
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=84.41 E-value=0.46 Score=42.79 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=22.4
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+.+..++.--.+.|+..|+||||||.||.-
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 445555544457788999999999999953
No 96
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=84.11 E-value=0.51 Score=42.86 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=19.6
Q ss_pred HhcCCceEEEEeccCCCCcceEeec
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
++.--...|+..|+||||||.||..
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHHH
Confidence 3343467899999999999999843
No 97
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.79 E-value=0.38 Score=39.70 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.6
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
+.|+..|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467888999999999985
No 98
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=83.29 E-value=0.61 Score=37.93 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=15.8
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
-.++-+|++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4588999999999998755
No 99
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=83.28 E-value=0.41 Score=41.24 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=16.0
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|+.-|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 577888999999999888
No 100
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=82.84 E-value=0.62 Score=40.39 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+..++..-.+.|+..|.||||||.+|.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 445555555678889999999999985
No 101
>PF13479 AAA_24: AAA domain
Probab=82.61 E-value=0.52 Score=39.35 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=16.9
Q ss_pred ceEEEEeccCCCCcceEeecC
Q psy9445 154 NCTVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G~ 174 (243)
+..++.||++|+|||++...-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 456889999999999877543
No 102
>PRK09183 transposase/IS protein; Provisional
Probab=82.29 E-value=0.76 Score=39.68 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=14.9
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.++-+|++|+||||.+..
T Consensus 104 ~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 356799999999998755
No 103
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=82.23 E-value=0.69 Score=39.87 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=23.6
Q ss_pred cchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 133 KQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 133 ~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+...+... ..+++.+-.+ -.++-||++|+||||-..+
T Consensus 87 ~~~~~l~~~-~~~~~~~~~~--~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 87 IDKKALEDL-ASLVEFFERG--ENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred hhHHHHHHH-HHHHHHhccC--CcEEEECCCCCcHHHHHHH
Confidence 344444442 3344443333 4467799999999998854
No 104
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=82.21 E-value=0.63 Score=42.49 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=19.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+++.++. .++.++..|+||||||.||.
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 3444433 45568889999999999983
No 105
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=81.99 E-value=0.62 Score=38.41 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=19.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+..++...+-.++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3455555544445568999999999884
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=81.62 E-value=0.95 Score=35.37 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=20.9
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+++.+.+|.+ ++..|+||+|||..+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 4455566666 77899999999998865
No 107
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=81.50 E-value=0.84 Score=37.88 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=18.9
Q ss_pred cCCceEEEEeccCCCCcceEeec
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
......|+-||++|+|||+....
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHH
Confidence 45667899999999999987743
No 108
>PRK08939 primosomal protein DnaI; Reviewed
Probab=81.32 E-value=0.71 Score=40.95 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=25.9
Q ss_pred cchhhhccccchhHHHHhcC-CceEEEEeccCCCCcceEeecC
Q psy9445 133 KQVDVYKYVVNPLIDEVLSG-YNCTVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 133 ~q~ev~~~~~~~~v~~~~~G-~n~~i~ayG~tgsGKt~Tm~G~ 174 (243)
.+..++.. +...++....| ..-.++-||++|+||||-+.+-
T Consensus 135 ~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 135 DRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred HHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHH
Confidence 44445443 24445444332 2346999999999999998653
No 109
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=81.24 E-value=0.52 Score=39.00 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=14.2
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.|+..|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46678999999999983
No 110
>PRK06835 DNA replication protein DnaC; Validated
Probab=81.22 E-value=0.81 Score=41.07 Aligned_cols=29 Identities=34% Similarity=0.519 Sum_probs=21.3
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
..++.+-... -.++-||++|+||||.+.+
T Consensus 174 ~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 174 NFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 3455544333 5699999999999998865
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=81.10 E-value=0.68 Score=34.55 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=27.4
Q ss_pred EEEeccCCCCcceEeecCCCC--CC--CCCC--CCCCCCCchhHHHHHHHHHHHhc
Q psy9445 157 VFAYGQTGTGKTFTMEGEKSN--DP--SISW--QDDPLSGIVPRAMNHLFDELRLL 206 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G~~~~--~~--~~~~--~~~~~~Gii~r~~~~lf~~~~~~ 206 (243)
|+-||+.|+|||+...--... .+ ..+. -.....+-..+.+..+|++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence 577999999999875321000 00 0000 00112355677888888877653
No 112
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=80.01 E-value=0.88 Score=41.26 Aligned_cols=37 Identities=27% Similarity=0.498 Sum_probs=26.6
Q ss_pred CCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 131 ESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 131 ~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+..|..+|+.++. .+.......+|.-|..|+||||.+
T Consensus 3 n~eQ~~~~~~v~~----~~~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIE----AIENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHH----HHHccCCcEEEEEcCCCCChhHHH
Confidence 3567888877543 333344567788999999999986
No 113
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=79.71 E-value=0.88 Score=33.74 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.4
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4778999999998765
No 114
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=79.28 E-value=0.97 Score=45.79 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=20.0
Q ss_pred hHHHHhc--CCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLS--GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~--G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++. |-+.+++.||++|+|||.|+
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 3444454 44556789999999999987
No 115
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=78.86 E-value=0.49 Score=37.66 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=13.3
Q ss_pred hcCCceEEEEeccCCCCcceEee
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..+....++.+|..|+|||+.+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHH
Confidence 45667789999999999998764
No 116
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=78.65 E-value=0.57 Score=38.50 Aligned_cols=28 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+.+.+-.|.+..++.||+.|+|||..|.
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 3333444667889999999999999874
No 117
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=78.65 E-value=0.89 Score=37.33 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
..+..|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 345689999999988743
No 118
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=78.59 E-value=0.69 Score=43.30 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=29.8
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.|+||...... ++...|.. +..+.+.--..+| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 48888765443 34445543 2333221101234 488999999999999865
No 119
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=78.55 E-value=1.1 Score=38.14 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=17.5
Q ss_pred hcCCceEEEEeccCCCCcceEee
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+......++.+|++|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 33334567889999999998875
No 120
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=78.38 E-value=0.57 Score=34.59 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=13.4
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
|+-||++|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5679999999988763
No 121
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=77.69 E-value=1.4 Score=36.92 Aligned_cols=21 Identities=43% Similarity=0.510 Sum_probs=14.2
Q ss_pred CceEEEEeccCCCCcceEeec
Q psy9445 153 YNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+-.+++.|+.|||||+.-..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a 38 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALA 38 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHH
T ss_pred hCCeEEEECCCCCcHHHHHHH
Confidence 455789999999999986543
No 122
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=77.30 E-value=1.1 Score=39.89 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=19.2
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.++..++.+ ...++..|.||||||++|.
T Consensus 139 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 345555554 3456667999999997763
No 123
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=76.85 E-value=0.97 Score=39.95 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=20.3
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..+..++.+ ...|+..|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 345555553 4567889999999999874
No 124
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=76.57 E-value=1.1 Score=34.13 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=13.9
Q ss_pred EEEeccCCCCcceEeec
Q psy9445 157 VFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G 173 (243)
|+..|.+|||||+....
T Consensus 2 ii~~G~pgsGKSt~a~~ 18 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKR 18 (143)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999886543
No 125
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=76.53 E-value=0.97 Score=39.06 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.1
Q ss_pred CceEEEEeccCCCCcceEeec
Q psy9445 153 YNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+..++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 566777889999999999964
No 126
>PHA00729 NTP-binding motif containing protein
Probab=76.43 E-value=1.7 Score=36.82 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=21.2
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+++.+..+--..|+.+|.+|+|||+-...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 345555553335799999999999987644
No 127
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=76.06 E-value=1.8 Score=36.14 Aligned_cols=22 Identities=14% Similarity=0.483 Sum_probs=17.4
Q ss_pred CCceEEEEeccCCCCcceEeec
Q psy9445 152 GYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.....++-||++|+||||-+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHH
Confidence 3455789999999999987643
No 128
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=76.03 E-value=0.82 Score=37.60 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.++.+|++|||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57889999999998875
No 129
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=75.93 E-value=1.2 Score=39.38 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+....++-||++|+|||+++
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCCceEEEECCCCCCHHHHH
Confidence 344345888999999999876
No 130
>PRK06921 hypothetical protein; Provisional
Probab=75.61 E-value=1.3 Score=38.50 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.6
Q ss_pred ceEEEEeccCCCCcceEeecC
Q psy9445 154 NCTVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G~ 174 (243)
.-.++.||++|+||||.+..-
T Consensus 117 ~~~l~l~G~~G~GKThLa~ai 137 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAA 137 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 456889999999999998663
No 131
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=75.26 E-value=0.96 Score=41.72 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=30.0
Q ss_pred ceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 119 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 119 ~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
...|+||-.... .++...|.. ..-+...-.+..--+|-||.+|+||||-|.-
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa--~~~va~~~g~~~nplfi~G~~GlGKTHLl~A 132 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAA--AKAVAENPGGAYNPLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCchhheeeC-CchHHHHHH--HHHHHhccCCcCCcEEEECCCCCCHHHHHHH
Confidence 346888865543 344443332 1112222222233588999999999999954
No 132
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=75.12 E-value=1.1 Score=39.01 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=28.7
Q ss_pred ceEEEEeccCCCCcceEeecCCCCCCCCCC---C----CCCCCCchhHHHHHHHHHHHh
Q psy9445 154 NCTVFAYGQTGTGKTFTMEGEKSNDPSISW---Q----DDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~---~----~~~~~Gii~r~~~~lf~~~~~ 205 (243)
.-.|+-||++|+|||.+----.. ....+. . -..+-|=-.|-+++||++..+
T Consensus 151 PknVLFyGppGTGKTm~Akalan-e~kvp~l~vkat~liGehVGdgar~Ihely~rA~~ 208 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALAN-EAKVPLLLVKATELIGEHVGDGARRIHELYERARK 208 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhc-ccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45689999999999876422111 000000 0 001224556778888877664
No 133
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=74.04 E-value=1.2 Score=39.06 Aligned_cols=54 Identities=24% Similarity=0.334 Sum_probs=33.2
Q ss_pred CCceEEEEeccCCCCcceEeecCC---CCC----C----CCCCCCCCCCCchhHHHHHHHHHHHh
Q psy9445 152 GYNCTVFAYGQTGTGKTFTMEGEK---SND----P----SISWQDDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm~G~~---~~~----~----~~~~~~~~~~Gii~r~~~~lf~~~~~ 205 (243)
.-+.+|.-+|+.|||||+.|---. ... . -.+|.-....-+....+..|+..+..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~ 82 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEK 82 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHH
Confidence 456788899999999999883211 000 0 00133333345677778888887765
No 134
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=73.92 E-value=1.4 Score=33.57 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=12.8
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|+-+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998755
No 135
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=73.67 E-value=1.4 Score=35.54 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.2
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
+.++-+|++|+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999764
No 136
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=73.61 E-value=1.3 Score=34.18 Aligned_cols=17 Identities=47% Similarity=0.757 Sum_probs=12.7
Q ss_pred eEEEEe-ccCCCCcceEe
Q psy9445 155 CTVFAY-GQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ay-G~tgsGKt~Tm 171 (243)
..|+.+ |.||+||||.-
T Consensus 53 pLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CEEEEeecCCCCcHHHHH
Confidence 345555 99999999853
No 137
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=73.28 E-value=1.5 Score=32.42 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 567899999998765
No 138
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=73.24 E-value=1.6 Score=38.35 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=16.8
Q ss_pred cCC-ceEEEEeccCCCCcceEeec
Q psy9445 151 SGY-NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 151 ~G~-n~~i~ayG~tgsGKt~Tm~G 173 (243)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 34566699999999987743
No 139
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=73.10 E-value=2.4 Score=36.04 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=26.9
Q ss_pred ecCCCcchhhhccccchhHHHHhc-C-CceEEEEeccCCCCcce
Q psy9445 128 FSQESKQVDVYKYVVNPLIDEVLS-G-YNCTVFAYGQTGTGKTF 169 (243)
Q Consensus 128 F~~~a~q~ev~~~~~~~~v~~~~~-G-~n~~i~ayG~tgsGKt~ 169 (243)
|++...|+.+-.. ...+++.+.. + .-..++-||+.|.|||.
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhH
Confidence 5666778888665 4666776654 2 33568999999999975
No 140
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=72.45 E-value=1.4 Score=37.88 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=15.2
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...++-||++|+|||++.
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 356788999999999876
No 141
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=72.33 E-value=1.7 Score=38.89 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=19.3
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..+..++.+ ...|+.-|.||||||.+|.
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 344444443 2357889999999999883
No 142
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=72.06 E-value=1.9 Score=35.04 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=18.5
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+++..++.. ...+.-.|++|||||.++.
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 344444442 3456678999999998764
No 143
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=71.46 E-value=1.5 Score=38.38 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=14.4
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.+...|++|+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455569999999999854
No 144
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.35 E-value=1.4 Score=40.39 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=16.3
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999999984
No 145
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=71.34 E-value=1.5 Score=35.95 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=14.7
Q ss_pred CceEEEEeccCCCCcceEee
Q psy9445 153 YNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~ 172 (243)
....++..|+.|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34668889999999988763
No 146
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=71.13 E-value=2.2 Score=33.52 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=18.2
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+..++++. ..++..|.+|+|||.++..
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 33444442 3456789999999997755
No 147
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=70.98 E-value=1.7 Score=42.79 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.2
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+..|.+|||||.+.
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHH
T ss_pred cccccceeeccccccccccch
Confidence 489999999999999999884
No 148
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=70.65 E-value=1.5 Score=39.64 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=19.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
++..+.. ....|+..|.||||||.+|..
T Consensus 154 ~l~~~v~-~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 154 FLHACVV-GRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence 3444333 234577899999999998844
No 149
>PRK06547 hypothetical protein; Provisional
Probab=70.07 E-value=3.2 Score=33.54 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=16.7
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+..+..+-.--|..+|.+|||||+.-
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33433344444556699999998754
No 150
>PLN03025 replication factor C subunit; Provisional
Probab=69.19 E-value=2.3 Score=37.64 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=16.4
Q ss_pred CCceEEEEeccCCCCcceEeec
Q psy9445 152 GYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
|.-..++-||+.|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 4334577799999999987743
No 151
>KOG2543|consensus
Probab=68.58 E-value=1.7 Score=39.69 Aligned_cols=19 Identities=42% Similarity=0.794 Sum_probs=15.7
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
..|+-||.+||||||++.-
T Consensus 31 S~~~iyG~sgTGKT~~~r~ 49 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVRQ 49 (438)
T ss_pred eeEEEeccCCCchhHHHHH
Confidence 4468999999999998743
No 152
>PRK13764 ATPase; Provisional
Probab=68.45 E-value=2.3 Score=41.30 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.6
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
...|+..|+||||||+++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 44589999999999998844
No 153
>PRK10536 hypothetical protein; Provisional
Probab=68.36 E-value=2.3 Score=36.90 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=14.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-++..|+.||||||..
T Consensus 75 ~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 75 QLIFATGEAGCGKTWIS 91 (262)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 47899999999999865
No 154
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=67.81 E-value=2.8 Score=38.44 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=48.0
Q ss_pred eEEecceeecCCCcchhhhccccchhHHHHhc----CCceEEEEeccCCCCcceEe------ecCCCCCCCCC--CCCCC
Q psy9445 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLS----GYNCTVFAYGQTGTGKTFTM------EGEKSNDPSIS--WQDDP 187 (243)
Q Consensus 120 ~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~----G~n~~i~ayG~tgsGKt~Tm------~G~~~~~~~~~--~~~~~ 187 (243)
+++.|+.+.+..---..+.+.++..+....+. ...--+.-||+.|+|||+.. +|-.- ..+. .-.+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~--i~vsa~eL~sk 187 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEP--IVMSAGELESE 187 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe--EEEEHHHhhcC
Confidence 35666766555444455555555555555553 23345778999999999762 12110 0000 00122
Q ss_pred CCCchhHHHHHHHHHHHh
Q psy9445 188 LSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 188 ~~Gii~r~~~~lf~~~~~ 205 (243)
..|=--+.++++|.....
T Consensus 188 ~vGEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 188 NAGEPGKLIRQRYREAAD 205 (413)
T ss_pred cCCcHHHHHHHHHHHHHH
Confidence 346677899999987654
No 155
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=67.76 E-value=3.5 Score=38.36 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=19.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.| +++.++||||||..
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556778887 67788999999965
No 156
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=67.46 E-value=2.5 Score=40.33 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=20.8
Q ss_pred chhHHHHhcCCc--eEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLSGYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~G~n--~~i~ayG~tgsGKt~Tm 171 (243)
...++..+.|.. .-++.+|++|+|||.|+
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 445555555543 45778999999999988
No 157
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=67.40 E-value=3.1 Score=33.74 Aligned_cols=25 Identities=44% Similarity=0.611 Sum_probs=18.5
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3455566776 577899999999773
No 158
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=67.11 E-value=2.1 Score=39.12 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=15.6
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...+...|++|+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3466678999999999984
No 159
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=66.98 E-value=2.4 Score=38.15 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=18.2
Q ss_pred HHhcCCceEEEEeccCCCCcceEee
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+..+. |.|+.-|.||||||.++-
T Consensus 168 ~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 168 RAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 334443 788999999999998763
No 160
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=66.50 E-value=2.6 Score=36.92 Aligned_cols=21 Identities=33% Similarity=0.706 Sum_probs=18.1
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 378889999999999998754
No 161
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.39 E-value=3.7 Score=37.86 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=18.4
Q ss_pred HHhcCCceEEEEeccCCCCcceEee
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+-.+....++-||+.|+|||+...
T Consensus 30 ~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 30 MIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HHHcCCCceEEEECCCCCCHHHHHH
Confidence 3334555577789999999997764
No 162
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.95 E-value=2.2 Score=38.56 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=15.6
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...++-||++|+|||+...
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458899999999998764
No 163
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=65.73 E-value=2 Score=38.53 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=18.5
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
++..++.+ ...|+..|.||||||.+|-
T Consensus 152 ~L~~~v~~-~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 152 FLEHAVIS-KKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHc-CCcEEEECCCCCCHHHHHH
Confidence 34444433 2457788999999999884
No 164
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=64.79 E-value=3.3 Score=38.14 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=19.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|.| |++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 4556788987 556779999999753
No 165
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=64.73 E-value=2.7 Score=36.64 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=14.8
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..++-||+.|+|||+...
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 347789999999998763
No 166
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=64.59 E-value=2.5 Score=28.33 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
.+-.|++|||||.-|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999998655
No 167
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=64.51 E-value=2.9 Score=38.49 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=14.4
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
..-|.-.|+||.|||.|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 444555699999999998
No 168
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=64.50 E-value=3 Score=37.16 Aligned_cols=75 Identities=21% Similarity=0.301 Sum_probs=40.7
Q ss_pred EEEeccCCCCcceEeec---CCCC---CCCCCCCCCCCCCchhHHHHHHHH-HHHh-c----CCc-----eE-----EEE
Q psy9445 157 VFAYGQTGTGKTFTMEG---EKSN---DPSISWQDDPLSGIVPRAMNHLFD-ELRL-L----GDA-----EF-----TVR 214 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G---~~~~---~~~~~~~~~~~~Gii~r~~~~lf~-~~~~-~----~~~-----~~-----~v~ 214 (243)
...||+|||||++-+-. ..-- +.++.. -.++.|.||..-...++ ++.+ . .+. .. -|.
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfF-ItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~ 168 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFF-ITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVE 168 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEE-ECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccccee
Confidence 45699999999987642 1111 111111 23456888887666664 3322 1 110 11 256
Q ss_pred EEEEEEECCeEEeCCCCC
Q psy9445 215 VSFLEIYNEELIDLLSPT 232 (243)
Q Consensus 215 ~S~~eiyne~v~DLL~~~ 232 (243)
++|=|.-.|.=+|.=+|+
T Consensus 169 msy~e~t~~~NldI~~p~ 186 (369)
T PF02456_consen 169 MSYDEATSPENLDITNPN 186 (369)
T ss_pred ecHhhhCCccccCCCCch
Confidence 666666666666665554
No 169
>PRK04328 hypothetical protein; Provisional
Probab=64.46 E-value=5.3 Score=34.16 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=20.5
Q ss_pred hhHHHHhcC---CceEEEEeccCCCCcce
Q psy9445 144 PLIDEVLSG---YNCTVFAYGQTGTGKTF 169 (243)
Q Consensus 144 ~~v~~~~~G---~n~~i~ayG~tgsGKt~ 169 (243)
+-++.++.| ....++.+|.+|+|||.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 456777775 46788899999999965
No 170
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=64.46 E-value=3.4 Score=36.00 Aligned_cols=28 Identities=39% Similarity=0.576 Sum_probs=19.8
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+++.++.. +--++-.|++|+|||..+..
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHHh
Confidence 44444443 55678899999999988753
No 171
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=64.37 E-value=1.7 Score=39.29 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=28.3
Q ss_pred eEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 120 ~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
..|.|+.+-++ +++-.. ++..+.+-.-+.|+.+|.+|||||+.+-+
T Consensus 12 ~~~pf~~ivGq----~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVGQ----EEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhCh----HHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 36777777665 333222 33333332224578999999999998754
No 172
>PF05729 NACHT: NACHT domain
Probab=64.27 E-value=2.7 Score=32.45 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=14.6
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.++-+|..|+|||..|..
T Consensus 2 ~l~I~G~~G~GKStll~~ 19 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRK 19 (166)
T ss_pred EEEEECCCCCChHHHHHH
Confidence 367899999999987743
No 173
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=64.25 E-value=4.7 Score=37.14 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=27.5
Q ss_pred cCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 129 SQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 129 ~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
++...|+-+... ..++-..+-.|.-.+.+-||+.|+|||.-
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred HHhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 344456666544 34444444557778899999999999864
No 174
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.23 E-value=3.2 Score=37.69 Aligned_cols=36 Identities=33% Similarity=0.561 Sum_probs=24.5
Q ss_pred chhhhccccchhHHH-Hhc--CCc--eEEEEeccCCCCcce
Q psy9445 134 QVDVYKYVVNPLIDE-VLS--GYN--CTVFAYGQTGTGKTF 169 (243)
Q Consensus 134 q~ev~~~~~~~~v~~-~~~--G~n--~~i~ayG~tgsGKt~ 169 (243)
-.++.+.+..|+.+. +|+ |.. --|+-||+.|+|||-
T Consensus 160 i~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 160 IQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred HHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 445555566676654 454 543 458999999999974
No 175
>KOG3859|consensus
Probab=64.18 E-value=3.7 Score=36.11 Aligned_cols=29 Identities=31% Similarity=0.647 Sum_probs=23.4
Q ss_pred chhHHH-HhcCCceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDE-VLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~-~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.++|+. +-+||.-.|++.|.||.|||.-|
T Consensus 30 dQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 345654 55699999999999999998755
No 176
>PTZ00424 helicase 45; Provisional
Probab=63.77 E-value=4.5 Score=36.62 Aligned_cols=26 Identities=42% Similarity=0.643 Sum_probs=19.9
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 356677888885 46789999999764
No 177
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=63.45 E-value=3.9 Score=40.34 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.4
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|||||.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 588999999999999999876
No 178
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=62.98 E-value=3.3 Score=36.11 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=18.4
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488899999999999998764
No 179
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=62.76 E-value=3.3 Score=34.94 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=17.2
Q ss_pred ceEEEEeccCCCCcceEeecC
Q psy9445 154 NCTVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G~ 174 (243)
...++-||.+|+|||+....-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 345899999999999987554
No 180
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=62.66 E-value=3.3 Score=38.74 Aligned_cols=52 Identities=17% Similarity=0.365 Sum_probs=30.7
Q ss_pred ceEEecceeecCCCcchhhhccccchhHHHH--hcC--CceEEEEeccCCCCcceEeec
Q psy9445 119 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEV--LSG--YNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 119 ~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~--~~G--~n~~i~ayG~tgsGKt~Tm~G 173 (243)
...|+||..... .++...|.. +..+.+.. ..| +| -++-||++|+||||.+..
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 346888866643 344444433 23333221 123 34 477899999999998754
No 181
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.48 E-value=3.5 Score=36.98 Aligned_cols=15 Identities=40% Similarity=0.780 Sum_probs=12.7
Q ss_pred eEEEEeccCCCCcce
Q psy9445 155 CTVFAYGQTGTGKTF 169 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~ 169 (243)
..|+..|+||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
Confidence 457889999999985
No 182
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=62.27 E-value=3.5 Score=31.51 Aligned_cols=15 Identities=40% Similarity=0.787 Sum_probs=12.6
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
++-+|.+|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 456899999999866
No 183
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=61.75 E-value=4 Score=35.14 Aligned_cols=28 Identities=29% Similarity=0.583 Sum_probs=21.8
Q ss_pred HHHHhcCCceE-EEEeccCCCCcceEeec
Q psy9445 146 IDEVLSGYNCT-VFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 146 v~~~~~G~n~~-i~ayG~tgsGKt~Tm~G 173 (243)
...+++|..+- ++.||..|+|||.++-.
T Consensus 43 t~~Fl~G~pannvLL~G~rGtGKSSlVka 71 (249)
T PF05673_consen 43 TEQFLQGLPANNVLLWGARGTGKSSLVKA 71 (249)
T ss_pred HHHHHcCCCCcceEEecCCCCCHHHHHHH
Confidence 35688887543 77799999999988754
No 184
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=61.64 E-value=3.6 Score=35.90 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=16.2
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999998766
No 185
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=61.60 E-value=5.3 Score=36.81 Aligned_cols=24 Identities=42% Similarity=0.552 Sum_probs=19.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ +++.++||+|||..
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 4566778876 78889999999976
No 186
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=61.59 E-value=5 Score=39.62 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.2
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|||||.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 489999999999999999875
No 187
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=61.59 E-value=3.5 Score=36.59 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=19.8
Q ss_pred hcCCceEEEEeccCCCCcceEeec
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
....+.-++-||+.|||||.+|.-
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHH
Confidence 346677899999999999998854
No 188
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=61.54 E-value=3.7 Score=31.69 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.4
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
++..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999998763
No 189
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=61.54 E-value=3.8 Score=32.77 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=12.4
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+.+|..|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999875
No 190
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=61.18 E-value=4.8 Score=39.74 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.2
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.|.||+.-|.+|||||.+.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 488999999999999999875
No 191
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=61.11 E-value=6.4 Score=32.79 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=20.9
Q ss_pred hhHHHHhcC---CceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSG---YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G---~n~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++.| ....+.-+|++|+|||..+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 456677774 3466788999999998765
No 192
>PRK00131 aroK shikimate kinase; Reviewed
Probab=60.98 E-value=4.2 Score=31.86 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.3
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36889999999998763
No 193
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=60.97 E-value=3.7 Score=35.94 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=21.1
Q ss_pred cchhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 142 ~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..|++ ..+.--+..+-.||++++|||.++
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 44555 444555667888999999999766
No 194
>PRK07261 topology modulation protein; Provisional
Probab=60.82 E-value=3.9 Score=32.78 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|+..|.+|||||.-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999998755
No 195
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=60.72 E-value=5.9 Score=36.93 Aligned_cols=25 Identities=48% Similarity=0.612 Sum_probs=19.9
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.| +++-.+||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4566788887 677889999999763
No 196
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=60.65 E-value=3.1 Score=36.22 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.5
Q ss_pred eccCCCCcceEee
Q psy9445 160 YGQTGTGKTFTME 172 (243)
Q Consensus 160 yG~tgsGKt~Tm~ 172 (243)
.|++|||||.||-
T Consensus 33 iGpSGsGKTTtLk 45 (309)
T COG1125 33 IGPSGSGKTTTLK 45 (309)
T ss_pred ECCCCCcHHHHHH
Confidence 5999999999983
No 197
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=60.62 E-value=4.6 Score=37.84 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=18.2
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..++..+..|.| |+-||.+|+|||+..
T Consensus 185 e~l~~~L~~~~~--iil~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKKN--IILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 334545555554 445999999999765
No 198
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=60.56 E-value=4.7 Score=39.80 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 83 DRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 489999999999999999876
No 199
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=60.40 E-value=5.5 Score=36.18 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.0
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
++..|.||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5788999999999875
No 200
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=60.16 E-value=4 Score=37.36 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=15.0
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 456889999999999765
No 201
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=60.08 E-value=4.8 Score=39.86 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.1
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 88 DRENQSILITGESGAGKTENT 108 (693)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 489999999999999999875
No 202
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=60.06 E-value=5.4 Score=39.32 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 489999999999999999876
No 203
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=59.73 E-value=5.1 Score=39.66 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.2
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999875
No 204
>PRK08118 topology modulation protein; Reviewed
Probab=59.70 E-value=4.2 Score=32.51 Aligned_cols=14 Identities=29% Similarity=0.567 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+..|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999863
No 205
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=59.41 E-value=7.3 Score=32.41 Aligned_cols=28 Identities=39% Similarity=0.606 Sum_probs=20.2
Q ss_pred hhHHHHhc-C--CceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLS-G--YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~-G--~n~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++. | .+..++..|.+|||||.-.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 34566664 4 3678899999999997543
No 206
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=59.35 E-value=5.5 Score=39.29 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 489999999999999999876
No 207
>KOG1803|consensus
Probab=59.21 E-value=3.8 Score=39.48 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=13.9
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
-..--|+.|+|||+|+.
T Consensus 203 l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLV 219 (649)
T ss_pred ceEeeCCCCCCceeeHH
Confidence 34567999999999984
No 208
>CHL00181 cbbX CbbX; Provisional
Probab=59.09 E-value=4.2 Score=35.67 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=12.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
++-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999998764
No 209
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=59.09 E-value=4 Score=36.26 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=14.4
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++-||++|+|||+..
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 46788999999999765
No 210
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=59.03 E-value=3.7 Score=32.81 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
...+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 44567899999999776
No 211
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=59.00 E-value=5 Score=39.89 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.|.||+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 589999999999999999876
No 212
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=58.95 E-value=4.4 Score=34.43 Aligned_cols=18 Identities=39% Similarity=0.390 Sum_probs=14.3
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
+-..+|++|+|||.|+-.
T Consensus 34 ~~~~~GpagtGKtetik~ 51 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKD 51 (231)
T ss_dssp EEEEESSTTSSHHHHHHH
T ss_pred CCCCcCCCCCCchhHHHH
Confidence 334699999999999843
No 213
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=58.85 E-value=4.8 Score=39.45 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=15.2
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.++..|++|||||+|+..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 356899999999999864
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.18 E-value=3.8 Score=38.09 Aligned_cols=18 Identities=44% Similarity=0.530 Sum_probs=14.4
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.++..|++|+|||+|+..
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 556669999999998743
No 215
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=58.16 E-value=5.6 Score=38.81 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=21.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
++..+..++...++-||++|+|||+..
T Consensus 166 l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 166 LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 445555677778899999999999865
No 216
>KOG0953|consensus
Probab=58.15 E-value=13 Score=35.77 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=30.3
Q ss_pred EEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh
Q psy9445 156 TVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~ 205 (243)
-||..|+|+|||||.-.-.-... ......|=+-....++|++.+.
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHhhh
Confidence 38899999999999875432111 1223346667778889988874
No 217
>PRK04195 replication factor C large subunit; Provisional
Probab=58.04 E-value=4.8 Score=37.95 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred hhHHHHhcCC-ceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSGY-NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G~-n~~i~ayG~tgsGKt~Tm 171 (243)
..+.....|. .-.++.||++|+|||+..
T Consensus 28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 28 EWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3344444444 456889999999999776
No 218
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=58.01 E-value=5.5 Score=39.41 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999875
No 219
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=57.73 E-value=7 Score=31.98 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=14.8
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...+.-||.+|||||...
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 466788999999998764
No 220
>PHA02653 RNA helicase NPH-II; Provisional
Probab=57.70 E-value=7.6 Score=38.36 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=18.4
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
++..+++|.+ ++..|+||||||..
T Consensus 172 il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCC--EEEECCCCCCchhH
Confidence 4556666764 57899999999975
No 221
>KOG0739|consensus
Probab=57.40 E-value=4.9 Score=35.88 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=46.3
Q ss_pred ceeecCCCcchhhhccccchh-HHHHhcCCc---eEEEEeccCCCCcceEeecCCCCCCCCCC-CCC-----CCCCchhH
Q psy9445 125 DRVFSQESKQVDVYKYVVNPL-IDEVLSGYN---CTVFAYGQTGTGKTFTMEGEKSNDPSISW-QDD-----PLSGIVPR 194 (243)
Q Consensus 125 D~vF~~~a~q~ev~~~~~~~~-v~~~~~G~n---~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~-~~~-----~~~Gii~r 194 (243)
+-|.+-+...+.+=+.++.|+ ...+|.|.. -.|+.||+.|+||+|.----..+..+..+ ..+ .-.|---+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHH
Confidence 334555444455555555553 346777654 56899999999999854221100000100 000 01355678
Q ss_pred HHHHHHHHHHhcC
Q psy9445 195 AMNHLFDELRLLG 207 (243)
Q Consensus 195 ~~~~lf~~~~~~~ 207 (243)
.+..||+...+..
T Consensus 213 LVknLFemARe~k 225 (439)
T KOG0739|consen 213 LVKNLFEMARENK 225 (439)
T ss_pred HHHHHHHHHHhcC
Confidence 8999998877643
No 222
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=57.38 E-value=4.7 Score=31.03 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
+|+.+|..|||||+.-
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4778999999998754
No 223
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=57.36 E-value=7 Score=38.27 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=19.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|.+ +++.++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4556678876 778889999999764
No 224
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=57.13 E-value=6.5 Score=38.81 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=19.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.|.||+.-|.+|||||.+.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 489999999999999999886
No 225
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=56.88 E-value=4 Score=38.62 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=14.6
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..+.-.|++|+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 356667999999999984
No 226
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=56.85 E-value=4.8 Score=33.44 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=16.1
Q ss_pred eEEEEeccCCCCcceEe---ecCC
Q psy9445 155 CTVFAYGQTGTGKTFTM---EGEK 175 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm---~G~~ 175 (243)
..|+..|.||||||.+. .|..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~ 24 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKE 24 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 36889999999999753 5543
No 227
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=56.82 E-value=5 Score=32.21 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|+.+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999998544
No 228
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=56.53 E-value=5.3 Score=36.82 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=15.4
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|+-||++|+|||+..
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999875
No 229
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=56.25 E-value=5 Score=35.09 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=13.7
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
-++-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4788999999999864
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=55.96 E-value=7.3 Score=33.50 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=17.1
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.++..+..|.+ |+-+|.+|+|||...
T Consensus 13 ~~l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 34444445554 456899999998643
No 231
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=55.91 E-value=5.6 Score=31.68 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577999999998744
No 232
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=55.84 E-value=24 Score=32.19 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=13.2
Q ss_pred CceEEEEeccCCCCcce
Q psy9445 153 YNCTVFAYGQTGTGKTF 169 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~ 169 (243)
.+.-+.-.|++|+|||.
T Consensus 77 ~r~il~L~GPPGsGKSt 93 (361)
T smart00763 77 RKQILYLLGPVGGGKSS 93 (361)
T ss_pred CCcEEEEECCCCCCHHH
Confidence 34567778999999974
No 233
>PHA01747 putative ATP-dependent protease
Probab=55.65 E-value=5.3 Score=36.56 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=25.9
Q ss_pred cchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 142 ~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+-|+|+.-..+-|.-++=.|+.||||||+..-
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~e 209 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFVI 209 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHHH
Confidence 45777765677888899999999999998643
No 234
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=55.60 E-value=4.7 Score=30.06 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|++|||||..+
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3456799999998855
No 235
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=55.59 E-value=7.7 Score=35.24 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.7
Q ss_pred hcCCceEEEEeccCCCCcceE
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~T 170 (243)
-.|+.-+|++.|++|+|||.-
T Consensus 19 k~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred hcCCceEEEEecCCCCchhHH
Confidence 459999999999999999863
No 236
>PF13173 AAA_14: AAA domain
Probab=55.53 E-value=4.4 Score=30.60 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=14.6
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.++-+|+.|+|||+.+.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999999883
No 237
>KOG0926|consensus
Probab=55.46 E-value=6.9 Score=39.24 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=16.2
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
-|-.++..|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4567888999999999887
No 238
>PRK06217 hypothetical protein; Validated
Probab=55.27 E-value=5.4 Score=32.15 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999854
No 239
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=55.25 E-value=5.7 Score=30.41 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=16.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 366777889999999998753
No 240
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=55.19 E-value=4.2 Score=37.50 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=14.8
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
+-.++.+|.||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 346788999999998766
No 241
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=55.18 E-value=4.5 Score=31.75 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=10.7
Q ss_pred EEeccCCCCcceE
Q psy9445 158 FAYGQTGTGKTFT 170 (243)
Q Consensus 158 ~ayG~tgsGKt~T 170 (243)
+..|.+|||||+.
T Consensus 2 ~l~G~~GsGKSTl 14 (163)
T TIGR01313 2 VLMGVAGSGKSTI 14 (163)
T ss_pred EEECCCCCCHHHH
Confidence 4569999999865
No 242
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=54.84 E-value=4.2 Score=38.01 Aligned_cols=17 Identities=47% Similarity=0.686 Sum_probs=14.1
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.++-||++|+|||.+.
T Consensus 218 ~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLA 234 (438)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35778999999998775
No 243
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=54.61 E-value=6.4 Score=38.76 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=20.4
Q ss_pred cchhHHHHhc-----CCceEEEEeccCCCCcceEeec
Q psy9445 142 VNPLIDEVLS-----GYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 142 ~~~~v~~~~~-----G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+..+++++.. |.+..++ .-.||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli-~~~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLI-WHTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEE-EEecCCCccHHHHH
Confidence 4556666655 3444443 44999999999964
No 244
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=54.55 E-value=5.5 Score=37.63 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.1
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
-.++-||++|+|||+...
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 358899999999998863
No 245
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=54.52 E-value=4.2 Score=41.42 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.9
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.-.+.+|.||||||+++
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 4777888999999999988
No 246
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.51 E-value=9.1 Score=35.88 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=19.8
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+..+++|.+ +++..+||||||.+.
T Consensus 18 ~ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 35667788986 566689999999754
No 247
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=54.51 E-value=6.5 Score=28.65 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=13.2
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
|+..|..|+|||..+.
T Consensus 2 I~V~G~~g~GKTsLi~ 17 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIR 17 (119)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 5778999999987663
No 248
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=54.47 E-value=5.9 Score=30.06 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.2
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|+..|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998754
No 249
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=54.36 E-value=6.2 Score=37.66 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=17.4
Q ss_pred HhcCCceEEEEeccCCCCc
Q psy9445 149 VLSGYNCTVFAYGQTGTGK 167 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGK 167 (243)
-..+.+++|+-+|.||+||
T Consensus 263 r~A~tdstVLi~GESGTGK 281 (560)
T COG3829 263 RIAKTDSTVLILGESGTGK 281 (560)
T ss_pred hhcCCCCcEEEecCCCccH
Confidence 4578999999999999999
No 250
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=54.33 E-value=4.5 Score=42.24 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=20.4
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
..+.+.+.+|....+ ...+||||||+||..
T Consensus 423 ~ai~~a~~~g~r~~L-l~maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREIL-LAMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCeE-EEeCCCCCHHHHHHH
Confidence 334555556765444 448999999999865
No 251
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=54.31 E-value=4.3 Score=40.58 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=15.7
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
|..++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 456788999999999998
No 252
>KOG2373|consensus
Probab=54.04 E-value=11 Score=34.30 Aligned_cols=30 Identities=37% Similarity=0.576 Sum_probs=22.2
Q ss_pred chhHHHHhcCCc---eEEEEeccCCCCcceEeec
Q psy9445 143 NPLIDEVLSGYN---CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 143 ~~~v~~~~~G~n---~~i~ayG~tgsGKt~Tm~G 173 (243)
-|.++..+.|.. .||+ -|+||||||.-|.-
T Consensus 260 FpvLNk~LkGhR~GElTvl-TGpTGsGKTTFlsE 292 (514)
T KOG2373|consen 260 FPVLNKYLKGHRPGELTVL-TGPTGSGKTTFLSE 292 (514)
T ss_pred hhHHHHHhccCCCCceEEE-ecCCCCCceeEehH
Confidence 367888888874 3444 49999999987753
No 253
>KOG0652|consensus
Probab=54.00 E-value=6.4 Score=34.48 Aligned_cols=15 Identities=53% Similarity=0.855 Sum_probs=12.7
Q ss_pred eEEEEeccCCCCcce
Q psy9445 155 CTVFAYGQTGTGKTF 169 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~ 169 (243)
-.++.||+.|+|||.
T Consensus 206 KGvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTL 220 (424)
T ss_pred CceEeeCCCCCcHHH
Confidence 358999999999974
No 254
>PRK08233 hypothetical protein; Provisional
Probab=53.72 E-value=6 Score=31.35 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=11.4
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|..-|.+|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998743
No 255
>PHA02244 ATPase-like protein
Probab=53.72 E-value=8.4 Score=35.28 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=14.5
Q ss_pred hcCCceEEEEeccCCCCcceEe
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
-.|.+ |+-+|++|+|||+..
T Consensus 117 ~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 117 NANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred hcCCC--EEEECCCCCCHHHHH
Confidence 34555 555899999999654
No 256
>PRK14531 adenylate kinase; Provisional
Probab=53.69 E-value=6.1 Score=31.86 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
-|+.+|..|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999765
No 257
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=53.13 E-value=7.9 Score=31.08 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=16.5
Q ss_pred hcCCceEEEEeccCCCCcceE
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~T 170 (243)
+..++..|+-+|.+||||+..
T Consensus 18 ~a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 18 AASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp HTTSTS-EEEECSTTSSHHHH
T ss_pred HhCCCCCEEEEcCCCCcHHHH
Confidence 347789999999999999643
No 258
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=53.11 E-value=7.7 Score=38.64 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.9
Q ss_pred cCCceEEEEeccCCCCcceEeec
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+.-..++-||++|+|||+....
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 34445788899999999987743
No 259
>KOG0340|consensus
Probab=53.05 E-value=12 Score=33.95 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=22.8
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEeecC
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~ 174 (243)
.+|..+++|.+|- -...||||||.-+-.+
T Consensus 36 ~cIpkILeGrdci--g~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 36 ACIPKILEGRDCI--GCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhHHHhcccccc--cccccCCCcchhhhHH
Confidence 4677889999873 4568999999988664
No 260
>CHL00195 ycf46 Ycf46; Provisional
Probab=52.92 E-value=5.2 Score=37.95 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=14.8
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
.-.|+-||+.|+|||.+.
T Consensus 259 pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999998654
No 261
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=52.63 E-value=8.5 Score=36.04 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=19.6
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+..+++|.|+. .-.+||||||...
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 3566788998865 4569999999654
No 262
>KOG0729|consensus
Probab=52.45 E-value=7.7 Score=34.09 Aligned_cols=20 Identities=45% Similarity=0.748 Sum_probs=15.4
Q ss_pred CCc--eEEEEeccCCCCcceEe
Q psy9445 152 GYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n--~~i~ayG~tgsGKt~Tm 171 (243)
|.. --|+.||+.|+|||..-
T Consensus 207 gidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHH
Confidence 554 45899999999998643
No 263
>KOG1547|consensus
Probab=51.91 E-value=11 Score=32.65 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=18.8
Q ss_pred HhcCCceEEEEeccCCCCcceE
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~T 170 (243)
+-.||.-.|+..||+|.|||.-
T Consensus 41 mk~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred HhccCceEEEEEecCCCCchhh
Confidence 3459999999999999999753
No 264
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=51.79 E-value=13 Score=30.86 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=21.3
Q ss_pred chhHHHHhc-CC--ceEEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLS-GY--NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm~ 172 (243)
-+-++.++. |+ ...+..+|.+|+|||....
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 345677775 43 3567889999999987643
No 265
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=51.71 E-value=7 Score=31.14 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566899999999865
No 266
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=51.54 E-value=12 Score=34.83 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.9
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
.-++..|.||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 678899999999998874
No 267
>PRK04040 adenylate kinase; Provisional
Probab=51.49 E-value=7 Score=31.98 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.0
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.|+.+|..|+|||+..-
T Consensus 4 ~i~v~G~pG~GKtt~~~ 20 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLN 20 (188)
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 47789999999998653
No 268
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=51.38 E-value=5.6 Score=31.71 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=13.6
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999887
No 269
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=50.93 E-value=11 Score=38.06 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=19.5
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+.+|.|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 355678999988765 9999998654
No 270
>KOG0335|consensus
Probab=50.74 E-value=7.6 Score=36.55 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=18.9
Q ss_pred HHhcCCceEEEEeccCCCCcceEeecC
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm~G~ 174 (243)
.+.+|.+ ++|.+|||||||+-...+
T Consensus 107 ~i~~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 107 IISGGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred eeecCCc--eEEEccCCCcchHHHHHH
Confidence 3455655 489999999999987664
No 271
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=50.74 E-value=6.3 Score=27.10 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
++.+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567888999987753
No 272
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=50.56 E-value=12 Score=35.49 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=19.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.| +++-.+||||||..
T Consensus 151 aip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHH
Confidence 4666788876 67788999999965
No 273
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=50.53 E-value=5.7 Score=34.56 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
-++...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 345555999999999874
No 274
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.47 E-value=11 Score=36.51 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=19.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.| |++..+||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 4566788988 566899999999763
No 275
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=50.47 E-value=7 Score=37.29 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=27.4
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|+.+.+....-.++.+. +.. +...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 35667666654332222222 222 2356778999999999997654
No 276
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=50.46 E-value=9.1 Score=36.63 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=18.7
Q ss_pred HHHhcCCceEEEEeccCCCCcceEe
Q psy9445 147 DEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 147 ~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+.......|+-||++|+|||+.-
T Consensus 79 ~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 79 AALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred HHHhCCCCceEEEECCCCCCHHHHH
Confidence 3445566677888999999997654
No 277
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=50.34 E-value=6.9 Score=37.30 Aligned_cols=17 Identities=41% Similarity=0.661 Sum_probs=13.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.++-||++|+|||...
T Consensus 217 ~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIA 233 (512)
T ss_pred cceEEECCCCCcHHHHH
Confidence 34888999999999654
No 278
>PRK14532 adenylate kinase; Provisional
Probab=50.32 E-value=8.2 Score=31.04 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999754
No 279
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=50.23 E-value=14 Score=31.23 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=18.7
Q ss_pred hHHHHhc-CC--ceEEEEeccCCCCcce
Q psy9445 145 LIDEVLS-GY--NCTVFAYGQTGTGKTF 169 (243)
Q Consensus 145 ~v~~~~~-G~--n~~i~ayG~tgsGKt~ 169 (243)
-++.++. |+ ..+++.+|.+|+|||.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 3556555 54 4678889999999976
No 280
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=50.02 E-value=7 Score=35.19 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=21.3
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..++..++.+ ...++.-|.||||||.++.
T Consensus 168 ~~~L~~~v~~-~~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 168 ARLLRAIVAA-RLAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHhC-CCeEEEECCCCCCHHHHHH
Confidence 3455555554 3688889999999998664
No 281
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=49.98 E-value=5.6 Score=36.04 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=11.8
Q ss_pred EeccCCCCcceEee
Q psy9445 159 AYGQTGTGKTFTME 172 (243)
Q Consensus 159 ayG~tgsGKt~Tm~ 172 (243)
-.|++|||||.++.
T Consensus 36 lLGPSGcGKTTlLR 49 (352)
T COG3842 36 LLGPSGCGKTTLLR 49 (352)
T ss_pred EECCCCCCHHHHHH
Confidence 35999999999873
No 282
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=49.95 E-value=7.5 Score=30.42 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.1
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|..+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999998765
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=49.92 E-value=12 Score=31.30 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=20.3
Q ss_pred chhHHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
-+-++.++. |+ ...++.+|.+|+|||+-.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 344666665 53 567788899999996543
No 284
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=49.83 E-value=6 Score=33.59 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=11.3
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 32 ~iiGpSGSGKSTlL 45 (240)
T COG1126 32 VIIGPSGSGKSTLL 45 (240)
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 285
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=49.65 E-value=8.7 Score=38.51 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.2
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.|.||+.-|.+|+|||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 489999999999999999875
No 286
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.49 E-value=6.1 Score=36.66 Aligned_cols=18 Identities=44% Similarity=0.554 Sum_probs=15.2
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..|...|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 467778999999999984
No 287
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=49.45 E-value=11 Score=36.63 Aligned_cols=25 Identities=44% Similarity=0.723 Sum_probs=18.8
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.++. +..+||+|||.+.
T Consensus 33 ai~~il~g~dvl--v~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCL--VVMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEE--EEcCCCchHHHHH
Confidence 456678888765 4579999999753
No 288
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=49.16 E-value=5.4 Score=36.47 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=12.4
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.++..|.+|||||..|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34678999999999765
No 289
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=48.98 E-value=13 Score=33.63 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=21.2
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+.+.+|-+..++.-.+||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 345667787777888899999999864
No 290
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=48.86 E-value=8.1 Score=34.13 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=18.8
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+++..++.+- ..++--|.+|||||..|.
T Consensus 135 ~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 135 EFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 3444444432 456678999999998763
No 291
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=48.81 E-value=7 Score=33.54 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=16.7
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
.....|+..|.+|+|||.++
T Consensus 29 ~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cCCeEEEEECCCCCcHHHHH
Confidence 45678889999999998874
No 292
>KOG0742|consensus
Probab=48.81 E-value=8.9 Score=35.73 Aligned_cols=13 Identities=54% Similarity=0.999 Sum_probs=11.7
Q ss_pred EEEEeccCCCCcc
Q psy9445 156 TVFAYGQTGTGKT 168 (243)
Q Consensus 156 ~i~ayG~tgsGKt 168 (243)
.|+.||+.|+|||
T Consensus 386 NilfyGPPGTGKT 398 (630)
T KOG0742|consen 386 NILFYGPPGTGKT 398 (630)
T ss_pred heeeeCCCCCCch
Confidence 4789999999997
No 293
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=48.62 E-value=7.8 Score=38.14 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.1
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.+.||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999886
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.58 E-value=6.7 Score=36.13 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=15.1
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
-.+...|++|+|||+|+..
T Consensus 207 ~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3466789999999998854
No 295
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=48.51 E-value=8.7 Score=35.90 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=16.9
Q ss_pred CceEEEEeccCCCCcceEeec
Q psy9445 153 YNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~G 173 (243)
....|+.+|.+|+|||.|..-
T Consensus 94 ~p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 345778889999999998843
No 296
>PRK14974 cell division protein FtsY; Provisional
Probab=48.38 E-value=8 Score=34.81 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.7
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...|...|.+|+|||.|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4577888999999999763
No 297
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=48.25 E-value=6.8 Score=39.17 Aligned_cols=18 Identities=39% Similarity=0.422 Sum_probs=14.8
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..+...|++|+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456677999999999973
No 298
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=48.08 E-value=6.3 Score=35.53 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=11.9
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|+|||.++
T Consensus 33 vllGPSGcGKSTlL 46 (338)
T COG3839 33 VLLGPSGCGKSTLL 46 (338)
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999987
No 299
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=47.76 E-value=8 Score=30.17 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=11.3
Q ss_pred EEEeccCCCCcce
Q psy9445 157 VFAYGQTGTGKTF 169 (243)
Q Consensus 157 i~ayG~tgsGKt~ 169 (243)
|+..|.+|||||+
T Consensus 2 i~i~G~~GsGKST 14 (149)
T cd02027 2 IWLTGLSGSGKST 14 (149)
T ss_pred EEEEcCCCCCHHH
Confidence 5677999999987
No 300
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=47.65 E-value=6.5 Score=34.55 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=10.8
Q ss_pred eccCCCCcceEe
Q psy9445 160 YGQTGTGKTFTM 171 (243)
Q Consensus 160 yG~tgsGKt~Tm 171 (243)
.|++|+|||.+|
T Consensus 37 lG~NGAGKTTll 48 (293)
T COG1131 37 LGPNGAGKTTLL 48 (293)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 301
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=47.55 E-value=4.6 Score=33.90 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=10.6
Q ss_pred eccCCCCcceEe
Q psy9445 160 YGQTGTGKTFTM 171 (243)
Q Consensus 160 yG~tgsGKt~Tm 171 (243)
-|.+|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 399999999886
No 302
>PRK03839 putative kinase; Provisional
Probab=47.51 E-value=8.5 Score=30.75 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=11.7
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999853
No 303
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.50 E-value=6.5 Score=36.51 Aligned_cols=18 Identities=39% Similarity=0.375 Sum_probs=14.9
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..+...|.+|+|||.|+-
T Consensus 192 ~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTA 209 (420)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456677999999999993
No 304
>KOG0727|consensus
Probab=47.33 E-value=9.4 Score=33.32 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=40.0
Q ss_pred cCCCcchhhhccccchhHHHHh-c--CCc--eEEEEeccCCCCcceEeecCCCCCCCCCC----C---CCCCCCchhHHH
Q psy9445 129 SQESKQVDVYKYVVNPLIDEVL-S--GYN--CTVFAYGQTGTGKTFTMEGEKSNDPSISW----Q---DDPLSGIVPRAM 196 (243)
Q Consensus 129 ~~~a~q~ev~~~~~~~~v~~~~-~--G~n--~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~----~---~~~~~Gii~r~~ 196 (243)
+.+....++-+.+-.|+...-+ . |.+ -.|+.||+.|+|||-..-.-.. .....+ . -...-|-=||.+
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~-~t~a~firvvgsefvqkylgegprmv 237 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN-HTTAAFIRVVGSEFVQKYLGEGPRMV 237 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhh-ccchheeeeccHHHHHHHhccCcHHH
Confidence 4444455666666666666422 2 443 4589999999999643211100 000000 0 001225558888
Q ss_pred HHHHHHHHh
Q psy9445 197 NHLFDELRL 205 (243)
Q Consensus 197 ~~lf~~~~~ 205 (243)
+++|+...+
T Consensus 238 rdvfrlake 246 (408)
T KOG0727|consen 238 RDVFRLAKE 246 (408)
T ss_pred HHHHHHHhc
Confidence 888876654
No 305
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=47.28 E-value=6.5 Score=29.31 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=13.8
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
-|...|.+|+|||..+.
T Consensus 3 ki~~~G~~~~GKstl~~ 19 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLN 19 (161)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36678999999998764
No 306
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=47.23 E-value=12 Score=36.84 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=16.4
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+....++..|+||||||...
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred ccCCceEEEECCCCCcHHHHH
Confidence 344556889999999999754
No 307
>PHA02624 large T antigen; Provisional
Probab=47.22 E-value=11 Score=36.76 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=21.3
Q ss_pred HHHHhcCCce--EEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGYNC--TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~n~--~i~ayG~tgsGKt~Tm~ 172 (243)
+..++.|..- |++-||+.|||||+-..
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~ 449 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAA 449 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHH
Confidence 5566777655 89999999999987653
No 308
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=47.13 E-value=7 Score=34.87 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=14.3
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..+...|++|+|||.|+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455666999999998874
No 309
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=46.99 E-value=9.1 Score=35.46 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=14.6
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|+.+|++|+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356889999999998644
No 310
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=46.92 E-value=7.4 Score=32.39 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=11.5
Q ss_pred EeccCCCCcceEe
Q psy9445 159 AYGQTGTGKTFTM 171 (243)
Q Consensus 159 ayG~tgsGKt~Tm 171 (243)
-.|++|+|||.+|
T Consensus 30 ivGpNGaGKSTll 42 (212)
T cd03274 30 IVGPNGSGKSNVI 42 (212)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999988
No 311
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=46.92 E-value=7.1 Score=35.16 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=21.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
++-.+++..-..++-.|.+|+|||..+.+
T Consensus 16 l~~~~~~~~~g~vli~G~~G~gKttl~r~ 44 (337)
T TIGR02030 16 LLLNVIDPKIGGVMVMGDRGTGKSTAVRA 44 (337)
T ss_pred HHHHhcCCCCCeEEEEcCCCCCHHHHHHH
Confidence 44556665556788999999999987644
No 312
>PRK06696 uridine kinase; Validated
Probab=46.91 E-value=13 Score=31.00 Aligned_cols=27 Identities=30% Similarity=0.284 Sum_probs=17.5
Q ss_pred chhHHHHh---cCCceEEEEeccCCCCcce
Q psy9445 143 NPLIDEVL---SGYNCTVFAYGQTGTGKTF 169 (243)
Q Consensus 143 ~~~v~~~~---~G~n~~i~ayG~tgsGKt~ 169 (243)
..+.+.++ .+...-|..-|.+|||||+
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKST 37 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTT 37 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHH
Confidence 34444444 3444556666999999988
No 313
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=46.88 E-value=9.4 Score=31.02 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=10.9
Q ss_pred EEEeccCCCCcce
Q psy9445 157 VFAYGQTGTGKTF 169 (243)
Q Consensus 157 i~ayG~tgsGKt~ 169 (243)
|+-.|++|||||+
T Consensus 3 iiilG~pGaGK~T 15 (178)
T COG0563 3 ILILGPPGAGKST 15 (178)
T ss_pred EEEECCCCCCHHH
Confidence 5678999999965
No 314
>PRK14530 adenylate kinase; Provisional
Probab=46.62 E-value=8.9 Score=31.73 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=12.4
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|.+|||||..
T Consensus 5 ~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 5 RILLLGAPGAGKGTQ 19 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 477799999999854
No 315
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=46.51 E-value=12 Score=33.53 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.5
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
+..|+-.|.+|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 445888999999998654
No 316
>PRK06762 hypothetical protein; Provisional
Probab=46.40 E-value=10 Score=29.80 Aligned_cols=14 Identities=36% Similarity=0.648 Sum_probs=11.5
Q ss_pred EEEEeccCCCCcce
Q psy9445 156 TVFAYGQTGTGKTF 169 (243)
Q Consensus 156 ~i~ayG~tgsGKt~ 169 (243)
.|...|..|||||+
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 45667999999987
No 317
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=46.23 E-value=6.9 Score=33.21 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||.-|
T Consensus 35 aI~GpSGSGKSTLL 48 (226)
T COG1136 35 AIVGPSGSGKSTLL 48 (226)
T ss_pred EEECCCCCCHHHHH
Confidence 45799999999765
No 318
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=46.17 E-value=7.2 Score=38.84 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=16.2
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
|...+..|.||+|||+++
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677888999999999987
No 319
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=46.17 E-value=6.9 Score=31.80 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=11.2
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.--|.+|||||+.+
T Consensus 3 gi~G~~GsGKSTl~ 16 (198)
T cd02023 3 GIAGGSGSGKTTVA 16 (198)
T ss_pred EEECCCCCCHHHHH
Confidence 34699999998765
No 320
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=46.11 E-value=16 Score=30.40 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=19.5
Q ss_pred hHHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
-++.++. |+ ...+..+|++|+|||...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 3556553 54 466788999999998765
No 321
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=46.06 E-value=14 Score=31.48 Aligned_cols=29 Identities=31% Similarity=0.232 Sum_probs=21.2
Q ss_pred chhHHHHhc--CCceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLS--GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~--G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 445555555 55677888999999998665
No 322
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=45.97 E-value=18 Score=29.71 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=20.2
Q ss_pred hhHHHHhc-CCc--eEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLS-GYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~-G~n--~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++. |+. ..+..+|.+|+|||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 34666775 543 44778999999998764
No 323
>KOG0354|consensus
Probab=45.96 E-value=15 Score=36.44 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=18.8
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+++.+| |.|+-| .-+||+|||+.
T Consensus 69 eivq~AL-gkNtii--~lPTG~GKTfI 92 (746)
T KOG0354|consen 69 ELVQPAL-GKNTII--ALPTGSGKTFI 92 (746)
T ss_pred HHhHHhh-cCCeEE--EeecCCCccch
Confidence 3677888 999755 45999999975
No 324
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=45.85 E-value=9.6 Score=31.42 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=11.4
Q ss_pred EEEeccCCCCcce
Q psy9445 157 VFAYGQTGTGKTF 169 (243)
Q Consensus 157 i~ayG~tgsGKt~ 169 (243)
|+.+|..|||||.
T Consensus 2 I~i~G~pGsGKsT 14 (210)
T TIGR01351 2 LVLLGPPGSGKGT 14 (210)
T ss_pred EEEECCCCCCHHH
Confidence 6789999999976
No 325
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.74 E-value=6.9 Score=34.78 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.4
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
.-+|+..|.||||||..|.-
T Consensus 143 ~~siii~G~t~sGKTt~lna 162 (312)
T COG0630 143 RKSIIICGGTASGKTTLLNA 162 (312)
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 34678899999999998843
No 326
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=45.72 E-value=15 Score=29.30 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=20.5
Q ss_pred hHHHHhc-CCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLS-GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~-G~n~~i~ayG~tgsGKt~Tm 171 (243)
++..++. .....|+..|..|||||.-+
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHH
Confidence 4445554 66788999999999998655
No 327
>KOG0735|consensus
Probab=45.69 E-value=9.5 Score=37.88 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.3
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
..-|+-||+.|+||||-.
T Consensus 701 ~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLA 718 (952)
T ss_pred ccceEEECCCCCcHHHHH
Confidence 456899999999999864
No 328
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=45.57 E-value=10 Score=35.18 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=23.4
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
-++.+-+|-...-|..|.-||||||.+
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 456777898888999999999999987
No 329
>PRK14527 adenylate kinase; Provisional
Probab=45.53 E-value=11 Score=30.60 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=13.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+.+|.+|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45888999999998743
No 330
>PTZ00014 myosin-A; Provisional
Probab=45.36 E-value=12 Score=37.90 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.5
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|+|||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 488999999999999999653
No 331
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=45.14 E-value=9.4 Score=33.47 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=26.0
Q ss_pred ecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 128 FSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 128 F~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
|.+...|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.+-
T Consensus 7 y~~r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 7 YEPYPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCCCHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 3446667776444 3444555644 56678999999987764
No 332
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=45.14 E-value=9.4 Score=33.47 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=26.0
Q ss_pred ecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 128 FSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 128 F~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
|.+...|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.+-
T Consensus 7 y~~r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 7 YEPYPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCCCHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 3446667776444 3444555644 56678999999987764
No 333
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=45.11 E-value=9.6 Score=30.98 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|.-.|.+|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999998764
No 334
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=44.80 E-value=11 Score=33.42 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=12.4
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+-.|+||||||--
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 577889999999753
No 335
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=44.64 E-value=11 Score=27.45 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.1
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|...|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999998755
No 336
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=44.58 E-value=8.3 Score=31.85 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=14.8
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
++.-+|++|+|||..+..
T Consensus 24 ~~~i~G~NGsGKTTLl~a 41 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEA 41 (204)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 667789999999987743
No 337
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=44.46 E-value=12 Score=24.98 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=11.0
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|.--|..|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999997654
No 338
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=44.34 E-value=8.3 Score=31.13 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999998765
No 339
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=44.31 E-value=9.9 Score=35.79 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=16.5
Q ss_pred HhcCCceEEEEeccCCCCcceEee
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+..|.| ++.||+.|||||....
T Consensus 195 AAGgHn--Ll~~GpPGtGKTmla~ 216 (490)
T COG0606 195 AAGGHN--LLLVGPPGTGKTMLAS 216 (490)
T ss_pred HhcCCc--EEEecCCCCchHHhhh
Confidence 344555 6789999999987663
No 340
>PRK01172 ski2-like helicase; Provisional
Probab=44.28 E-value=14 Score=36.21 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=17.8
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.++.+.+|.| ++..++||||||..
T Consensus 30 ai~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 30 AIEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHhcCCc--EEEECCCCchHHHH
Confidence 3445567776 56778999999975
No 341
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=43.99 E-value=20 Score=29.53 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=21.2
Q ss_pred chhHHHHhc-CC--ceEEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLS-GY--NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm~ 172 (243)
-+-++.++. |+ ...+.-+|.+|+|||..+.
T Consensus 5 ~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 5 SKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred cHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 345677775 44 3456778999999998654
No 342
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=43.99 E-value=16 Score=30.62 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=12.9
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
.-.|---|.+|||||+.+
T Consensus 33 ~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 334444599999999854
No 343
>KOG0745|consensus
Probab=43.98 E-value=11 Score=35.24 Aligned_cols=15 Identities=47% Similarity=0.802 Sum_probs=12.4
Q ss_pred eEEEEeccCCCCcce
Q psy9445 155 CTVFAYGQTGTGKTF 169 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~ 169 (243)
..|+..|+||||||+
T Consensus 227 SNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTL 241 (564)
T ss_pred ccEEEECCCCCchhH
Confidence 346789999999986
No 344
>KOG2035|consensus
Probab=43.95 E-value=14 Score=32.71 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=20.3
Q ss_pred ccccchhHHHHhc-CCceEEEEeccCCCCcceEe
Q psy9445 139 KYVVNPLIDEVLS-GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 139 ~~~~~~~v~~~~~-G~n~~i~ayG~tgsGKt~Tm 171 (243)
..-..+.+.++.. |----++.||++|+||-..+
T Consensus 18 ~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTri 51 (351)
T KOG2035|consen 18 HEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRI 51 (351)
T ss_pred HHHHHHHHHHhcccCCCCeEEEECCCCCCchhhH
Confidence 3334444444443 43356889999999985543
No 345
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=43.92 E-value=8.7 Score=35.79 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=14.6
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..++..|++|+|||.|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456677999999999874
No 346
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=43.81 E-value=10 Score=35.44 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=16.1
Q ss_pred cCCceEEEEeccCCCCcceEeec
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.++| ++-.|++|+||||...+
T Consensus 208 ~~~N--li~lGp~GTGKThla~~ 228 (449)
T TIGR02688 208 PNYN--LIELGPKGTGKSYIYNN 228 (449)
T ss_pred cCCc--EEEECCCCCCHHHHHHH
Confidence 4555 55689999999987755
No 347
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=43.81 E-value=15 Score=35.56 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=20.6
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+++.+++|.+ +++-.+||+|||.+.
T Consensus 19 ~~~i~~il~g~d--vlv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRD--VLVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCC--EEEEcCCCccHhHHH
Confidence 345667788987 456679999999874
No 348
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=43.76 E-value=9.9 Score=36.24 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=16.9
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
...+..|+-+|.+||||++..
T Consensus 224 A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 224 AMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred hCCCCCEEEECCCCccHHHHH
Confidence 446777999999999997654
No 349
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=43.70 E-value=13 Score=28.46 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.1
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
..|+-+|.-|+|||+-..|
T Consensus 16 ~vi~L~GdLGaGKTtf~r~ 34 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRG 34 (123)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5688899999999987754
No 350
>KOG0741|consensus
Probab=43.66 E-value=13 Score=35.81 Aligned_cols=15 Identities=47% Similarity=0.837 Sum_probs=13.0
Q ss_pred eEEEEeccCCCCcce
Q psy9445 155 CTVFAYGQTGTGKTF 169 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~ 169 (243)
--|+-||+.|+|||.
T Consensus 257 KGiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTL 271 (744)
T ss_pred eeEEEECCCCCChhH
Confidence 348999999999986
No 351
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=43.56 E-value=12 Score=29.69 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|...|++|||||..
T Consensus 3 ii~l~G~~GsGKsTl 17 (180)
T TIGR03263 3 LIVISGPSGVGKSTL 17 (180)
T ss_pred EEEEECCCCCCHHHH
Confidence 356789999999874
No 352
>PRK05580 primosome assembly protein PriA; Validated
Probab=43.34 E-value=14 Score=36.52 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.7
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..++.+|.||||||....
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 448899999999997653
No 353
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=43.20 E-value=13 Score=35.29 Aligned_cols=28 Identities=25% Similarity=0.554 Sum_probs=19.7
Q ss_pred HHHHhcCCce------EEEEeccCCCCcceEeec
Q psy9445 146 IDEVLSGYNC------TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 146 v~~~~~G~n~------~i~ayG~tgsGKt~Tm~G 173 (243)
+..++++.+. .++-.|++|||||+.|-+
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 3345666443 356789999999998874
No 354
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=43.13 E-value=12 Score=31.92 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.+..+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677899999998765
No 355
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=42.90 E-value=12 Score=37.25 Aligned_cols=17 Identities=47% Similarity=0.706 Sum_probs=14.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 46889999999999764
No 356
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=42.79 E-value=14 Score=31.07 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.2
Q ss_pred EeccCCCCcceEeec
Q psy9445 159 AYGQTGTGKTFTMEG 173 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G 173 (243)
-.|+.|+|||.|.+-
T Consensus 35 LLGPNGAGKTT~Fym 49 (243)
T COG1137 35 LLGPNGAGKTTTFYM 49 (243)
T ss_pred EECCCCCCceeEEEE
Confidence 369999999988643
No 357
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=42.79 E-value=11 Score=37.15 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=17.6
Q ss_pred hcCCceEEEEeccCCCCcceEe
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+...+..|+-+|.+||||++.-
T Consensus 395 ~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 395 VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred HhCCCCCEEEECCCCcCHHHHH
Confidence 3456778999999999998643
No 358
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=42.73 E-value=14 Score=33.32 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.1
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+....|+..|-.|+|||.|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 44667888899999999998
No 359
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=42.70 E-value=12 Score=34.80 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.6
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+-+|+||+|||...
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57889999999998765
No 360
>PRK00279 adk adenylate kinase; Reviewed
Probab=42.63 E-value=12 Score=31.06 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=12.1
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+.+|..|||||..
T Consensus 3 I~v~G~pGsGKsT~ 16 (215)
T PRK00279 3 LILLGPPGAGKGTQ 16 (215)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999863
No 361
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=42.63 E-value=10 Score=37.12 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.6
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
...++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 34578899999999999965
No 362
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=42.46 E-value=19 Score=28.85 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=17.9
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+...+.+ -+++..|++|.|||..+
T Consensus 29 l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 29 LKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHhcC--CEEEEECCCCCCHHHHH
Confidence 4455666 46667899999998776
No 363
>PRK10865 protein disaggregation chaperone; Provisional
Probab=42.29 E-value=13 Score=37.90 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56788899999999865
No 364
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=42.09 E-value=13 Score=28.53 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=10.9
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|.-.|++|||||.-
T Consensus 2 i~i~GpsGsGKstl 15 (137)
T cd00071 2 IVLSGPSGVGKSTL 15 (137)
T ss_pred EEEECCCCCCHHHH
Confidence 34569999999863
No 365
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=42.07 E-value=12 Score=36.05 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=17.2
Q ss_pred hcCCceEEEEeccCCCCcceE
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~T 170 (243)
+...+..|+-+|.+||||++.
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~ 258 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELA 258 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHH
Confidence 356788999999999999653
No 366
>PRK02496 adk adenylate kinase; Provisional
Probab=41.81 E-value=12 Score=29.95 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=11.8
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+..|..|||||..
T Consensus 4 i~i~G~pGsGKst~ 17 (184)
T PRK02496 4 LIFLGPPGAGKGTQ 17 (184)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999874
No 367
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=41.76 E-value=11 Score=36.07 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=17.8
Q ss_pred hcCCceEEEEeccCCCCcceEe
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+...+..|+-+|.+||||+..-
T Consensus 231 ~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 231 YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred HhCCCCcEEEECCCCcCHHHHH
Confidence 3567789999999999996543
No 368
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=41.71 E-value=30 Score=30.45 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+.-|.+|+|||..|
T Consensus 3 ~vIiTGlSGaGKs~Al 18 (284)
T PF03668_consen 3 LVIITGLSGAGKSTAL 18 (284)
T ss_pred EEEEeCCCcCCHHHHH
Confidence 3677899999999888
No 369
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=41.65 E-value=9.1 Score=38.77 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.2
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
|...+..|.+|||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445778999999999988
No 370
>KOG1534|consensus
Probab=41.64 E-value=16 Score=30.97 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.0
Q ss_pred eEEEEeccCCCCcceE
Q psy9445 155 CTVFAYGQTGTGKTFT 170 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~T 170 (243)
..+|.+|+.||||+.-
T Consensus 4 ya~lV~GpAgSGKSTy 19 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTY 19 (273)
T ss_pred eeEEEEccCCCCcchH
Confidence 3578999999999753
No 371
>PRK00300 gmk guanylate kinase; Provisional
Probab=41.47 E-value=15 Score=29.87 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=13.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34667799999999643
No 372
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=41.45 E-value=30 Score=31.44 Aligned_cols=48 Identities=19% Similarity=0.477 Sum_probs=32.1
Q ss_pred HHHHhcCC---ceEEEEeccCCCCcc---------------eEeecCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q psy9445 146 IDEVLSGY---NCTVFAYGQTGTGKT---------------FTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201 (243)
Q Consensus 146 v~~~~~G~---n~~i~ayG~tgsGKt---------------~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~ 201 (243)
+.++-.|. .--+.-.|+.|+||| ||+.|.+-...+ -+|||.-+++.|.
T Consensus 77 fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~P--------L~L~P~~~r~~~~ 142 (358)
T PF08298_consen 77 FKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEP--------LHLFPKELRREFE 142 (358)
T ss_pred HHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccCh--------hhhCCHhHHHHHH
Confidence 34444454 345777899999995 788777643322 3778888887764
No 373
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=41.37 E-value=10 Score=31.36 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.1
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.+.-.|++|||||..|.
T Consensus 30 ~~~i~G~NGsGKSTll~ 46 (213)
T cd03279 30 LFLICGPTGAGKSTILD 46 (213)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 44567999999987763
No 374
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=40.91 E-value=13 Score=29.71 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+.-|.+|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999998654
No 375
>KOG0736|consensus
Probab=40.90 E-value=14 Score=37.05 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=18.5
Q ss_pred CCCCCCchhHHHHHHHHHHHhcC
Q psy9445 185 DDPLSGIVPRAMNHLFDELRLLG 207 (243)
Q Consensus 185 ~~~~~Gii~r~~~~lf~~~~~~~ 207 (243)
....-|+|-|++.+|..+++...
T Consensus 783 sGDSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 783 SGDSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred CCCccccHHHHHHHHHHHhhccc
Confidence 34456999999999999998743
No 376
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=40.89 E-value=13 Score=37.02 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=13.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35788999999999754
No 377
>PRK14528 adenylate kinase; Provisional
Probab=40.87 E-value=13 Score=30.17 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|.+|||||+..
T Consensus 3 ~i~i~G~pGsGKtt~a 18 (186)
T PRK14528 3 NIIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999997654
No 378
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=40.82 E-value=17 Score=35.45 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=15.4
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
......+..|+||||||...
T Consensus 254 ~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 254 DVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCccEEEECCCCCcHHHHH
Confidence 33445788999999999764
No 379
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=40.63 E-value=13 Score=30.64 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.-.|.+|||||+.+
T Consensus 8 vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999998654
No 380
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=40.61 E-value=16 Score=31.45 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.6
Q ss_pred ceEEEEeccCCCCcce
Q psy9445 154 NCTVFAYGQTGTGKTF 169 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~ 169 (243)
..+++.+|.+|+|||.
T Consensus 36 gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 36 YSVINITGVSDTGKSL 51 (259)
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4667889999999986
No 381
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=40.57 E-value=13 Score=32.15 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 4 liil~G~pGSGKSTl 18 (300)
T PHA02530 4 IILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEcCCCCCHHHH
Confidence 577789999999865
No 382
>PLN02200 adenylate kinase family protein
Probab=40.51 E-value=13 Score=31.52 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.4
Q ss_pred eEEEEeccCCCCcceE
Q psy9445 155 CTVFAYGQTGTGKTFT 170 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~T 170 (243)
..|+..|.+|||||.-
T Consensus 44 ~ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 44 FITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4578899999999865
No 383
>PHA02774 E1; Provisional
Probab=40.07 E-value=19 Score=34.92 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=19.4
Q ss_pred HHHHhcCCc--eEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n--~~i~ayG~tgsGKt~Tm 171 (243)
+..++.|.. .|++-||+.|+||||-.
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 344556543 58999999999998864
No 384
>PTZ00301 uridine kinase; Provisional
Probab=39.98 E-value=9.3 Score=31.93 Aligned_cols=12 Identities=33% Similarity=0.554 Sum_probs=9.9
Q ss_pred eccCCCCcceEe
Q psy9445 160 YGQTGTGKTFTM 171 (243)
Q Consensus 160 yG~tgsGKt~Tm 171 (243)
-|.+|||||+.-
T Consensus 9 aG~SgSGKTTla 20 (210)
T PTZ00301 9 SGASGSGKSSLS 20 (210)
T ss_pred ECCCcCCHHHHH
Confidence 499999998853
No 385
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=39.94 E-value=24 Score=29.27 Aligned_cols=26 Identities=38% Similarity=0.673 Sum_probs=18.0
Q ss_pred HHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
++.++. |+ ...++-+|.+|+|||...
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 455554 54 456677899999997643
No 386
>PRK10867 signal recognition particle protein; Provisional
Probab=39.77 E-value=15 Score=34.37 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=15.3
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...|+..|.+|+|||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4567777999999998763
No 387
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=39.76 E-value=14 Score=38.13 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.|..++.+.+.+ +..|..|+||||+|-
T Consensus 354 Av~~il~s~~v~-vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 354 ALAHVTDGRDLG-VVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHhcCCCeE-EEEeCCCCCHHHHHH
Confidence 466677776644 488999999999864
No 388
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=39.45 E-value=14 Score=34.54 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.1
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+.+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999998654
No 389
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.40 E-value=8.5 Score=37.74 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=14.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++.||++|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999876
No 390
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=39.32 E-value=16 Score=29.83 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=12.2
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-+|+-.|+.|||||.-+
T Consensus 4 ~~vlL~Gps~SGKTaLf 20 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALF 20 (181)
T ss_dssp -EEEEE-STTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46788999999998544
No 391
>KOG1532|consensus
Probab=39.28 E-value=13 Score=32.71 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.2
Q ss_pred CceEEEEeccCCCCcceEee
Q psy9445 153 YNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..+||+..|-.|||||.-|.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~Q 37 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQ 37 (366)
T ss_pred CCcEEEEEecCCCCchhHHH
Confidence 46799999999999998774
No 392
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=39.21 E-value=28 Score=30.92 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=20.9
Q ss_pred chhHHHHhcC-C--ceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLSG-Y--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~G-~--n~~i~ayG~tgsGKt~Tm 171 (243)
.+-++.++.| + ...+.-||++|+|||.-+
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 4557777774 3 345668999999998755
No 393
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=39.17 E-value=11 Score=35.40 Aligned_cols=15 Identities=53% Similarity=0.691 Sum_probs=12.5
Q ss_pred EeccCCCCcceEeec
Q psy9445 159 AYGQTGTGKTFTMEG 173 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G 173 (243)
--|.||+|||-|+.-
T Consensus 24 IaGATGTGKTvTLqv 38 (502)
T PF05872_consen 24 IAGATGTGKTVTLQV 38 (502)
T ss_pred eeccCCCCceehHHH
Confidence 359999999999853
No 394
>CHL00176 ftsH cell division protein; Validated
Probab=39.02 E-value=13 Score=36.38 Aligned_cols=17 Identities=41% Similarity=0.532 Sum_probs=14.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999875
No 395
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=38.94 E-value=24 Score=35.51 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=24.9
Q ss_pred ccchhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 141 ~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+..+++++-+|.+-.+++. .||||||+|-+
T Consensus 173 AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAi 203 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLVM-ATGTGKTRTAI 203 (875)
T ss_pred HHHHHHHHHhcCCceEEEEE-ecCCCcceeHH
Confidence 35678888889999865555 69999999975
No 396
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=38.93 E-value=16 Score=30.87 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..+..+|++|+|||...
T Consensus 25 ~~~~i~G~~G~GKTtl~ 41 (230)
T PRK08533 25 SLILIEGDESTGKSILS 41 (230)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47788999999999883
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=38.92 E-value=12 Score=29.66 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=12.6
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
+...|.+|+|||.+..
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556999999998853
No 398
>PRK06851 hypothetical protein; Provisional
Probab=38.77 E-value=15 Score=33.58 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=21.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+.+.++++.+-.++--|.+|+|||++|.
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHH
Confidence 3445566777778889999999998874
No 399
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=38.75 E-value=15 Score=31.06 Aligned_cols=14 Identities=50% Similarity=0.612 Sum_probs=10.5
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
+.-+|+||+|||..
T Consensus 4 ~~i~GpT~tGKt~~ 17 (233)
T PF01745_consen 4 YLIVGPTGTGKTAL 17 (233)
T ss_dssp EEEE-STTSSHHHH
T ss_pred EEEECCCCCChhHH
Confidence 45689999999875
No 400
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=38.75 E-value=10 Score=37.74 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=22.2
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEeecC
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~ 174 (243)
.+++-+..+....++-||.+|+|||....|-
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHH
Confidence 4454444445556788999999999998763
No 401
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=38.59 E-value=14 Score=31.33 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.2
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
|+..|..|||||+...
T Consensus 2 Ivl~G~pGSGKST~a~ 17 (249)
T TIGR03574 2 IILTGLPGVGKSTFSK 17 (249)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6778999999987663
No 402
>PRK04296 thymidine kinase; Provisional
Probab=38.56 E-value=8.3 Score=31.45 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=14.2
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.++-+|..|+|||..+.+
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 456789999999966654
No 403
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.51 E-value=15 Score=34.65 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=16.4
Q ss_pred hcCCc-eEEEEeccCCCCcceEe
Q psy9445 150 LSGYN-CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 150 ~~G~n-~~i~ayG~tgsGKt~Tm 171 (243)
-.|.- ..++-||+.|+|||.+.
T Consensus 31 ~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 31 KKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred HcCCCCeEEEEECCCCCCHHHHH
Confidence 34433 45789999999999775
No 404
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=38.50 E-value=26 Score=30.77 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=19.6
Q ss_pred hhHHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++. |+ ...+..||.+|+|||..+
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 44556666 32 455678999999998754
No 405
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.48 E-value=11 Score=33.99 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.8
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
.-.++-||+.|+|||.+.
T Consensus 38 ~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred CeEEEEecCCCCCHHHHH
Confidence 446789999999999854
No 406
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.29 E-value=16 Score=32.85 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=18.6
Q ss_pred hHHHHhcCC-ceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGY-NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~-n~~i~ayG~tgsGKt~Tm 171 (243)
+.+.+-.|. .-.++-||+.|+|||++.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333344454 447888999999999765
No 407
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=38.26 E-value=16 Score=29.46 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+...|.+|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999998854
No 408
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=38.22 E-value=16 Score=32.48 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=17.6
Q ss_pred HHhcCC-ceEEEEeccCCCCcceEe
Q psy9445 148 EVLSGY-NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 148 ~~~~G~-n~~i~ayG~tgsGKt~Tm 171 (243)
.+-.|. .-.++-||+.|+|||.+.
T Consensus 29 ~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 29 AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 334453 456889999999999765
No 409
>PRK13949 shikimate kinase; Provisional
Probab=38.18 E-value=15 Score=29.35 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=13.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-.|+.|||||...
T Consensus 3 ~I~liG~~GsGKstl~ 18 (169)
T PRK13949 3 RIFLVGYMGAGKTTLG 18 (169)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998654
No 410
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=38.08 E-value=18 Score=30.85 Aligned_cols=25 Identities=44% Similarity=0.735 Sum_probs=18.0
Q ss_pred HHHHhcC-C--ceEEEEeccCCCCcceE
Q psy9445 146 IDEVLSG-Y--NCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 146 v~~~~~G-~--n~~i~ayG~tgsGKt~T 170 (243)
++.++.| + ...++.+|.+|||||.-
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f 39 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIF 39 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHH
Confidence 4555553 3 56788999999999743
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.01 E-value=12 Score=35.95 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=13.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|++|+|||+|+
T Consensus 351 ~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 351 GVIALVGPTGAGKTTTI 367 (559)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34555599999999997
No 412
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=38.00 E-value=17 Score=29.25 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=11.4
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
++..|.+|||||..
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999754
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=37.99 E-value=15 Score=34.18 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.1
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...++..|.+|+|||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 456778899999999985
No 414
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=37.99 E-value=24 Score=33.41 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=21.0
Q ss_pred chhHHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
-+-++.++. |+ ...++.+|.+|+|||.-.
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 344666775 44 577888999999997643
No 415
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=37.89 E-value=16 Score=32.46 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=12.2
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
++.-++||||||...
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567799999999763
No 416
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=37.86 E-value=12 Score=38.08 Aligned_cols=18 Identities=33% Similarity=0.626 Sum_probs=15.2
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
++-.+..|+||||||+.+
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 445688999999999887
No 417
>KOG0922|consensus
Probab=37.82 E-value=20 Score=35.07 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.4
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
|..++.-|.||||||.-+
T Consensus 66 nqvlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQI 83 (674)
T ss_pred CCEEEEEcCCCCCccccH
Confidence 566778899999999877
No 418
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=37.72 E-value=13 Score=37.51 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.3
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
+-.+..|+||||||+.|
T Consensus 442 gn~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 442 GHTLVVGPTGAGKSVLL 458 (811)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35667999999999988
No 419
>KOG0924|consensus
Probab=37.63 E-value=19 Score=35.61 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=18.0
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+-|..|+..|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 66888999999999999877
No 420
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=37.60 E-value=21 Score=36.18 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=19.6
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..+++.+-++. .++..|+||||||..+.
T Consensus 11 ~~i~~~l~~~~--~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 11 PELLTALKTAP--QVLLKAPTGAGKSTWLP 38 (812)
T ss_pred HHHHHHHHhCC--CEEEEcCCCCCHHHHHH
Confidence 44555554443 46789999999998763
No 421
>KOG2655|consensus
Probab=37.55 E-value=23 Score=32.27 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=19.7
Q ss_pred HHhcCCceEEEEeccCCCCcceE
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+-.|+.-++++.|++|+|||.-
T Consensus 15 ~~KkG~~ftlmvvG~sGlGKsTf 37 (366)
T KOG2655|consen 15 SVKKGFDFTLMVVGESGLGKSTF 37 (366)
T ss_pred HHhcCCceEEEEecCCCccHHHH
Confidence 35579999999999999999653
No 422
>KOG0328|consensus
Probab=37.51 E-value=29 Score=30.76 Aligned_cols=24 Identities=50% Similarity=0.725 Sum_probs=18.8
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
|..++.|.+ |+|-.|+|+|||.|.
T Consensus 58 i~~IlkGrd--ViaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 58 IPQILKGRD--VIAQAQSGTGKTATF 81 (400)
T ss_pred hhhhhcccc--eEEEecCCCCceEEE
Confidence 445678887 468889999998776
No 423
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=37.45 E-value=13 Score=31.21 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=12.3
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
..-.|++|+|||..|
T Consensus 26 ~~i~GpNGsGKStll 40 (243)
T cd03272 26 NVVVGRNGSGKSNFF 40 (243)
T ss_pred EEEECCCCCCHHHHH
Confidence 335799999999886
No 424
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=37.34 E-value=18 Score=29.81 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
..+-+|++|+|||-.+
T Consensus 26 ~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4557899999998654
No 425
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=37.23 E-value=17 Score=29.19 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=12.3
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.++..|.+|||||.-
T Consensus 3 ~ili~G~~~sGKS~~ 17 (170)
T PRK05800 3 LILVTGGARSGKSRF 17 (170)
T ss_pred EEEEECCCCccHHHH
Confidence 378899999999753
No 426
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=37.11 E-value=19 Score=28.79 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.7
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|.+|+|||...
T Consensus 6 ~I~liG~~GaGKStl~ 21 (172)
T PRK05057 6 NIFLVGPMGAGKSTIG 21 (172)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5888999999998765
No 427
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.07 E-value=19 Score=30.90 Aligned_cols=29 Identities=41% Similarity=0.714 Sum_probs=21.5
Q ss_pred HHhcCCceEE------EEeccCCCCcc---eEeecCCC
Q psy9445 148 EVLSGYNCTV------FAYGQTGTGKT---FTMEGEKS 176 (243)
Q Consensus 148 ~~~~G~n~~i------~ayG~tgsGKt---~Tm~G~~~ 176 (243)
.++.|.|.+| --.|+.||||| |+++|.+.
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4677777766 34799999995 67888763
No 428
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.06 E-value=22 Score=28.85 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceEeec
Q psy9445 157 VFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G 173 (243)
|+| |+.|||||....-
T Consensus 6 Iva-G~NGsGKstv~~~ 21 (187)
T COG4185 6 IVA-GPNGSGKSTVYAS 21 (187)
T ss_pred EEe-cCCCCCceeeeec
Confidence 444 9999999876544
No 429
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=36.96 E-value=16 Score=29.53 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=11.7
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|..-|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999998754
No 430
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=36.89 E-value=16 Score=29.29 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=13.7
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
-.+-+|++|+|||+.+.
T Consensus 34 l~~i~g~~g~GKT~~~~ 50 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLAL 50 (193)
T ss_dssp EEEEEECSTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 46678999999998663
No 431
>PRK05541 adenylylsulfate kinase; Provisional
Probab=36.79 E-value=17 Score=28.81 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-.|.+|||||...
T Consensus 9 ~I~i~G~~GsGKst~a 24 (176)
T PRK05541 9 VIWITGLAGSGKTTIA 24 (176)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5667899999997655
No 432
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=36.72 E-value=11 Score=29.94 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.0
Q ss_pred eccCCCCcceEee
Q psy9445 160 YGQTGTGKTFTME 172 (243)
Q Consensus 160 yG~tgsGKt~Tm~ 172 (243)
.|.+|||||+.+.
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 4899999998874
No 433
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=36.71 E-value=22 Score=35.70 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=0.0
Q ss_pred chhhhccccchhHHHHhcCC------ceEEEEeccCCCCcce
Q psy9445 134 QVDVYKYVVNPLIDEVLSGY------NCTVFAYGQTGTGKTF 169 (243)
Q Consensus 134 q~ev~~~~~~~~v~~~~~G~------n~~i~ayG~tgsGKt~ 169 (243)
|.+.-+. +...|.....|. .++++-+|++|+|||+
T Consensus 463 Q~~ai~~-l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~ 503 (758)
T PRK11034 463 QDKAIEA-LTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTE 503 (758)
T ss_pred cHHHHHH-HHHHHHHHhccccCCCCCcceEEEECCCCCCHHH
No 434
>KOG0925|consensus
Probab=36.55 E-value=21 Score=34.01 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=17.7
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+.|.+|..-|.||||||.-+
T Consensus 60 ~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCceEEEEecCCCCccccC
Confidence 56889999999999999766
No 435
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=36.53 E-value=27 Score=33.01 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=19.7
Q ss_pred hhHHHHhc-CC--ceEEEEeccCCCCcce
Q psy9445 144 PLIDEVLS-GY--NCTVFAYGQTGTGKTF 169 (243)
Q Consensus 144 ~~v~~~~~-G~--n~~i~ayG~tgsGKt~ 169 (243)
+-++.++. |+ ..+++..|.+|||||.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~ 36 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTL 36 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHH
Confidence 34566676 43 6788999999999974
No 436
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=36.51 E-value=15 Score=34.16 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=15.7
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...|...|.+|+|||.|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567778999999999874
No 437
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=36.49 E-value=15 Score=29.91 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=10.5
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
.+-.|..|||||+.+.
T Consensus 3 ~~~~G~pGsGKS~~av 18 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAV 18 (193)
T ss_dssp EEEE--TTSSHHHHHH
T ss_pred EEEEcCCCCcHhHHHH
Confidence 3557999999998653
No 438
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=36.38 E-value=18 Score=32.18 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|+||||||.-
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 467789999999754
No 439
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=36.35 E-value=12 Score=37.75 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
+..+.+|+||||||..+
T Consensus 427 g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 427 GMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778999999999886
No 440
>PRK01184 hypothetical protein; Provisional
Probab=36.33 E-value=16 Score=29.15 Aligned_cols=15 Identities=27% Similarity=0.284 Sum_probs=12.3
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 366789999999884
No 441
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=36.24 E-value=12 Score=37.95 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.6
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
|...+..|++|+|||+.|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 566788999999999877
No 442
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=36.10 E-value=25 Score=34.57 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=16.1
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
+.-++++|.||||||..+.
T Consensus 175 ~~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred CceEEEEecCCCCCceEEE
Confidence 4568899999999999775
No 443
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=36.03 E-value=13 Score=36.15 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=16.9
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+..++.. .-.+..|..|||||+|+.
T Consensus 154 ~~~al~~--~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 154 VALALKS--NFSLITGGPGTGKTTTVA 178 (586)
T ss_pred HHHHhhC--CeEEEEcCCCCCHHHHHH
Confidence 3344443 345568999999999864
No 444
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=36.01 E-value=32 Score=31.07 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=21.5
Q ss_pred cchhHHHHhcC-C--ceEEEEeccCCCCcceEe
Q psy9445 142 VNPLIDEVLSG-Y--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 142 ~~~~v~~~~~G-~--n~~i~ayG~tgsGKt~Tm 171 (243)
..+-++.++.| + .....-||..|||||.-.
T Consensus 111 G~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~ 143 (344)
T PLN03187 111 GSQALDELLGGGIETRCITEAFGEFRSGKTQLA 143 (344)
T ss_pred CcHhHHhhcCCCCCCCeEEEEecCCCCChhHHH
Confidence 45567788874 3 344568999999998743
No 445
>PRK05480 uridine/cytidine kinase; Provisional
Probab=35.82 E-value=17 Score=29.82 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=12.3
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.--|.+|||||+..
T Consensus 8 iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 8 IIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999998654
No 446
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=17 Score=34.26 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=30.6
Q ss_pred CCceEEEEeccCCCCcceEeecCCCCC-CCC---C--CCCCCCCCchhHHHHHHHHHHHh
Q psy9445 152 GYNCTVFAYGQTGTGKTFTMEGEKSND-PSI---S--WQDDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm~G~~~~~-~~~---~--~~~~~~~Gii~r~~~~lf~~~~~ 205 (243)
.....++-||+.|+|||+.----.... .+. . .--+..-|-.-..++.+|.....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHc
Confidence 344579999999999987642211000 000 0 00111237777888888887763
No 447
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=35.70 E-value=30 Score=30.95 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=22.3
Q ss_pred cchhHHHHhc--CCc--eEEEEeccCCCCcceEe
Q psy9445 142 VNPLIDEVLS--GYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 142 ~~~~v~~~~~--G~n--~~i~ayG~tgsGKt~Tm 171 (243)
..+-++.++. |+. ..+.-||++|||||...
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLa 72 (321)
T TIGR02012 39 GSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLA 72 (321)
T ss_pred CCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 4556777775 664 46788999999998763
No 448
>PRK04182 cytidylate kinase; Provisional
Probab=35.68 E-value=17 Score=28.57 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.6
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+..|..|||||..
T Consensus 3 I~i~G~~GsGKsti 16 (180)
T PRK04182 3 ITISGPPGSGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 66779999999873
No 449
>KOG0743|consensus
Probab=35.65 E-value=16 Score=34.13 Aligned_cols=14 Identities=43% Similarity=0.786 Sum_probs=12.0
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
+-||+.|||||.-+
T Consensus 239 LLYGPPGTGKSS~I 252 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFI 252 (457)
T ss_pred eeeCCCCCCHHHHH
Confidence 78999999998654
No 450
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=35.56 E-value=19 Score=30.17 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=12.5
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
--|+.+|..|+|||....
T Consensus 23 h~lLl~GppGtGKTmlA~ 40 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLAR 40 (206)
T ss_dssp --EEEES-CCCTHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 368899999999986543
No 451
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=35.54 E-value=17 Score=38.48 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=16.1
Q ss_pred HhcCCceEEEEeccCCCCcceEe
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
++.+ |..++..|+||||||.-+
T Consensus 85 ai~~-~~VviI~GeTGSGKTTql 106 (1294)
T PRK11131 85 AIRD-HQVVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHh-CCeEEEECCCCCCHHHHH
Confidence 3444 345778899999999854
No 452
>PRK13767 ATP-dependent helicase; Provisional
Probab=35.50 E-value=24 Score=36.05 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=18.3
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.|+. .-.+||||||...
T Consensus 40 Ai~~il~g~nvl--i~APTGSGKTlaa 64 (876)
T PRK13767 40 AIPLIHEGKNVL--ISSPTGSGKTLAA 64 (876)
T ss_pred HHHHHHcCCCEE--EECCCCCcHHHHH
Confidence 345567888754 4679999999863
No 453
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=35.40 E-value=19 Score=32.02 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.1
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++-+|+|+||||..-
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678899999998754
No 454
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=35.39 E-value=19 Score=31.69 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.2
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|+..|+||||||.-.
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999998644
No 455
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=35.30 E-value=13 Score=35.93 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=12.4
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
-++.+|.||||||..
T Consensus 178 h~li~G~tGsGKs~~ 192 (566)
T TIGR02759 178 HILIHGTTGSGKSVA 192 (566)
T ss_pred ceEEEcCCCCCHHHH
Confidence 467899999999853
No 456
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=35.28 E-value=13 Score=32.76 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=14.8
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.|...|.+|||||..+.-
T Consensus 8 ~i~i~G~~GsGKtt~~~~ 25 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRA 25 (288)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 477889999999988743
No 457
>PRK13531 regulatory ATPase RavA; Provisional
Probab=35.28 E-value=18 Score=34.38 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=17.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
++..++.|- .|+-+|++|+|||+..
T Consensus 32 ll~aalag~--hVLL~GpPGTGKT~LA 56 (498)
T PRK13531 32 CLLAALSGE--SVFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHccCC--CEEEECCCChhHHHHH
Confidence 444455554 5677999999998754
No 458
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=35.15 E-value=13 Score=28.25 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=12.6
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
|...|.+|+|||..+.
T Consensus 2 i~l~G~~g~GKTtL~~ 17 (170)
T cd01876 2 IAFAGRSNVGKSSLIN 17 (170)
T ss_pred EEEEcCCCCCHHHHHH
Confidence 4567999999987663
No 459
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.05 E-value=18 Score=34.53 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=17.4
Q ss_pred HhcCC-ceEEEEeccCCCCcceEe
Q psy9445 149 VLSGY-NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 149 ~~~G~-n~~i~ayG~tgsGKt~Tm 171 (243)
+..|. .-.++-+|+.|+|||.+.
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHH
Confidence 34444 357889999999999765
No 460
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=35.02 E-value=13 Score=29.33 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=10.9
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
...|.+|||||..+
T Consensus 3 ~i~G~~gsGKTtl~ 16 (155)
T TIGR00176 3 QIVGPKNSGKTTLI 16 (155)
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999764
No 461
>PTZ00088 adenylate kinase 1; Provisional
Probab=34.94 E-value=18 Score=30.64 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=11.4
Q ss_pred EEEeccCCCCcce
Q psy9445 157 VFAYGQTGTGKTF 169 (243)
Q Consensus 157 i~ayG~tgsGKt~ 169 (243)
|+..|+.|||||+
T Consensus 9 Ivl~G~PGsGK~T 21 (229)
T PTZ00088 9 IVLFGAPGVGKGT 21 (229)
T ss_pred EEEECCCCCCHHH
Confidence 7889999999964
No 462
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=34.88 E-value=13 Score=30.01 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.7
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|+|||..+
T Consensus 25 ~l~G~nG~GKSTLl 38 (176)
T cd03238 25 VVTGVSGSGKSTLV 38 (176)
T ss_pred EEECCCCCCHHHHH
Confidence 45799999999876
No 463
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=34.69 E-value=19 Score=36.05 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=19.0
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+..++.+ +..++..|..|+|||++|-.
T Consensus 361 v~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 361 VRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 4445554 33456789999999988855
No 464
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=34.68 E-value=22 Score=26.62 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|++|||||.-+
T Consensus 13 ~~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLL 28 (137)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEccCCCccccce
Confidence 3455799999998765
No 465
>PTZ00110 helicase; Provisional
Probab=34.49 E-value=24 Score=33.87 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.2
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.++ ++.++||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 35567889875 56789999999763
No 466
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=34.49 E-value=24 Score=27.01 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 2 ~ki~v~G~~~~GKSsli 18 (163)
T cd01860 2 FKLVLLGDSSVGKSSLV 18 (163)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34678899999998766
No 467
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=34.37 E-value=9.1 Score=39.27 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=11.8
Q ss_pred eccCCCCcceEeecC
Q psy9445 160 YGQTGTGKTFTMEGE 174 (243)
Q Consensus 160 yG~tgsGKt~Tm~G~ 174 (243)
-=.||||||||+.+.
T Consensus 65 ~M~TGtGKT~~~~~~ 79 (986)
T PRK15483 65 KMETGTGKTYVYTRL 79 (986)
T ss_pred EeCCCCCHHHHHHHH
Confidence 347999999987663
No 468
>PRK13946 shikimate kinase; Provisional
Probab=34.33 E-value=19 Score=28.97 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=14.2
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.|+..|..|||||..-
T Consensus 11 ~~I~l~G~~GsGKsti~ 27 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVG 27 (184)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 36889999999998754
No 469
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=34.29 E-value=25 Score=27.15 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=13.2
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||.-+
T Consensus 4 ~kv~vvG~~~~GKTsli 20 (165)
T cd01864 4 FKIILIGDSNVGKTCVV 20 (165)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45667899999998654
No 470
>PRK09401 reverse gyrase; Reviewed
Probab=34.15 E-value=27 Score=36.85 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=18.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..++.|.+..+ ..+||||||..
T Consensus 88 ~i~~il~g~dv~i--~ApTGsGKT~f 111 (1176)
T PRK09401 88 WAKRLLLGESFAI--IAPTGVGKTTF 111 (1176)
T ss_pred HHHHHHCCCcEEE--EcCCCCCHHHH
Confidence 4556788987654 56999999964
No 471
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=34.09 E-value=34 Score=30.20 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=20.1
Q ss_pred hhHHHHhcC-C--ceEEEEeccCCCCcceEee
Q psy9445 144 PLIDEVLSG-Y--NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 144 ~~v~~~~~G-~--n~~i~ayG~tgsGKt~Tm~ 172 (243)
+-++.++.| + ...+.-||.+|+|||...+
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHH
Confidence 445566653 3 4567789999999987553
No 472
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=33.98 E-value=19 Score=28.93 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|.-.|..|||||+..
T Consensus 2 i~itG~~gsGKst~~ 16 (179)
T cd02022 2 IGLTGGIGSGKSTVA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998654
No 473
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=33.81 E-value=21 Score=27.16 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.3
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|..+|.+|+|||.-+
T Consensus 3 i~~~G~~~~GKTsl~ 17 (164)
T cd04139 3 VIVVGAGGVGKSALT 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999754
No 474
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=33.68 E-value=21 Score=31.84 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=22.4
Q ss_pred chhhhccccchhHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 134 QVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 134 q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
...-|+..+.+ |+.+---..+-++..|+||.||+|.
T Consensus 189 rnp~fnrmieq-ierva~rsr~p~ll~gptgagksfl 224 (531)
T COG4650 189 RNPHFNRMIEQ-IERVAIRSRAPILLNGPTGAGKSFL 224 (531)
T ss_pred cChHHHHHHHH-HHHHHhhccCCeEeecCCCcchhHH
Confidence 33344444333 3344445566788999999999863
No 475
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=33.37 E-value=18 Score=29.35 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|.+|+|||.++
T Consensus 2 ~i~lvG~~g~GKSsl~ 17 (196)
T cd01852 2 RLVLVGKTGAGKSATG 17 (196)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999864
No 476
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=33.35 E-value=14 Score=29.87 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=0.0
Q ss_pred EeccCCCCcceEeec
Q psy9445 159 AYGQTGTGKTFTMEG 173 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G 173 (243)
-+|+.|||||.-+..
T Consensus 4 iiG~N~sGKS~il~a 18 (303)
T PF13304_consen 4 IIGPNGSGKSNILEA 18 (303)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 479999999988743
No 477
>PLN02165 adenylate isopentenyltransferase
Probab=33.33 E-value=21 Score=32.20 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=12.6
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-.|+||||||...
T Consensus 45 iivIiGPTGSGKStLA 60 (334)
T PLN02165 45 VVVIMGATGSGKSRLS 60 (334)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566899999998654
No 478
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.33 E-value=22 Score=29.96 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.+.|++|+|||.-+
T Consensus 33 ~vv~lGpSGcGKTTLL 48 (259)
T COG4525 33 LVVVLGPSGCGKTTLL 48 (259)
T ss_pred EEEEEcCCCccHHHHH
Confidence 4578899999998754
No 479
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=33.31 E-value=22 Score=26.92 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|...|..|+|||.-+
T Consensus 2 i~i~G~~~~GKTsli 16 (160)
T cd00876 2 VVVLGAGGVGKSAIT 16 (160)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998765
No 480
>PRK13947 shikimate kinase; Provisional
Probab=33.24 E-value=20 Score=28.10 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=12.4
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 3 ~I~l~G~~GsGKst~ 17 (171)
T PRK13947 3 NIVLIGFMGTGKTTV 17 (171)
T ss_pred eEEEEcCCCCCHHHH
Confidence 377889999999764
No 481
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=33.13 E-value=16 Score=36.98 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.5
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
++..+..|+||+|||+.|
T Consensus 456 ~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 456 VGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 456788999999999887
No 482
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=33.12 E-value=20 Score=32.00 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=16.4
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+.-|+-.|.+||||++.-
T Consensus 27 ~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 27 PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 55677888999999997654
No 483
>PRK05973 replicative DNA helicase; Provisional
Probab=33.06 E-value=31 Score=29.42 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=18.4
Q ss_pred HHHHhcCCc--eEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n--~~i~ayG~tgsGKt~Tm 171 (243)
.+.+..|+. ..++..|.+|+|||...
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~la 81 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLG 81 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHH
Confidence 445666663 45777999999998643
No 484
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=33.03 E-value=22 Score=30.30 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=11.2
Q ss_pred EEEeccCCCCcce
Q psy9445 157 VFAYGQTGTGKTF 169 (243)
Q Consensus 157 i~ayG~tgsGKt~ 169 (243)
|+-+|+.|||||.
T Consensus 2 iLLmG~~~SGKTS 14 (232)
T PF04670_consen 2 ILLMGPRRSGKTS 14 (232)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEEcCCCCChhh
Confidence 5679999999975
No 485
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=33.01 E-value=37 Score=27.20 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=17.4
Q ss_pred HHhcC-CceEEEEeccCCCCcceEe
Q psy9445 148 EVLSG-YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 148 ~~~~G-~n~~i~ayG~tgsGKt~Tm 171 (243)
.+-.| ...+++-||+.|+|||...
T Consensus 7 ~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 7 ALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 33445 4467888999999998554
No 486
>KOG1970|consensus
Probab=32.87 E-value=18 Score=34.84 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.4
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++..|++|+|||.|+
T Consensus 112 iLLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTV 127 (634)
T ss_pred EEEEeCCCCCCchhHH
Confidence 3556799999999987
No 487
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.72 E-value=19 Score=34.98 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=16.5
Q ss_pred HhcCC-ceEEEEeccCCCCcceEe
Q psy9445 149 VLSGY-NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 149 ~~~G~-n~~i~ayG~tgsGKt~Tm 171 (243)
+-.|. .-.++-||+.|+|||.+.
T Consensus 29 i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 29 LDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred HHcCCCCeEEEEECCCCCCHHHHH
Confidence 33444 335789999999999764
No 488
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=32.58 E-value=26 Score=33.40 Aligned_cols=25 Identities=44% Similarity=0.610 Sum_probs=19.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|.+ |++..|||||||...
T Consensus 59 ~IP~~l~g~D--vi~~A~TGsGKT~Af 83 (513)
T COG0513 59 AIPLILAGRD--VLGQAQTGTGKTAAF 83 (513)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556788854 678899999997654
No 489
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....
Probab=32.57 E-value=24 Score=33.27 Aligned_cols=20 Identities=40% Similarity=0.715 Sum_probs=15.9
Q ss_pred EEEEeccCCCCcce-------EeecCC
Q psy9445 156 TVFAYGQTGTGKTF-------TMEGEK 175 (243)
Q Consensus 156 ~i~ayG~tgsGKt~-------Tm~G~~ 175 (243)
+.+.||-+|||||. +|.|..
T Consensus 212 ~alfFGLSGTGKTTLs~d~~r~ligDD 238 (466)
T PF01293_consen 212 TALFFGLSGTGKTTLSADPERELIGDD 238 (466)
T ss_dssp EEEEEESTTSSHHHHHSBTTSEEEESS
T ss_pred eEEEEecCCCCccccccCCcceEEeCc
Confidence 46789999999995 666754
No 490
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=32.52 E-value=20 Score=33.54 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceE
Q psy9445 155 CTVFAYGQTGTGKTFT 170 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~T 170 (243)
..|+.+|++|+|||..
T Consensus 51 ~~ILliGp~G~GKT~L 66 (443)
T PRK05201 51 KNILMIGPTGVGKTEI 66 (443)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999853
No 491
>KOG3354|consensus
Probab=32.48 E-value=29 Score=28.08 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=15.4
Q ss_pred cCCceEEEEeccCCCCcce
Q psy9445 151 SGYNCTVFAYGQTGTGKTF 169 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~ 169 (243)
.-+..+|...|.+|||||.
T Consensus 9 ~~~k~~i~vmGvsGsGKST 27 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKST 27 (191)
T ss_pred CCCceeEEEEecCCCChhh
Confidence 3456688899999999974
No 492
>KOG0923|consensus
Probab=32.47 E-value=27 Score=34.47 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.1
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
-+..++--|.||||||.-+
T Consensus 279 e~QVLiI~GeTGSGKTTQi 297 (902)
T KOG0923|consen 279 EHQVLIIVGETGSGKTTQI 297 (902)
T ss_pred hCcEEEEEcCCCCCccccc
Confidence 3567888999999999877
No 493
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=32.45 E-value=16 Score=27.58 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|...|.+|+|||..+
T Consensus 4 i~l~G~~~~GKstli 18 (157)
T cd04164 4 VVIVGKPNVGKSSLL 18 (157)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998765
No 494
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=32.29 E-value=30 Score=35.27 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
++++..|++|+|||+..
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888899999998753
No 495
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=32.29 E-value=10 Score=22.45 Aligned_cols=15 Identities=47% Similarity=0.975 Sum_probs=8.1
Q ss_pred HhcCCceEEEEeccC
Q psy9445 149 VLSGYNCTVFAYGQT 163 (243)
Q Consensus 149 ~~~G~n~~i~ayG~t 163 (243)
-++||||.|-.||-.
T Consensus 5 qlqgfncvvrsyglp 19 (44)
T PF11406_consen 5 QLQGFNCVVRSYGLP 19 (44)
T ss_dssp --TTEEE-S--TTS-
T ss_pred eecccceEEEccCCC
Confidence 378999999999854
No 496
>PRK00625 shikimate kinase; Provisional
Probab=32.21 E-value=21 Score=28.78 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.6
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+-.|..|||||+.
T Consensus 2 ~I~LiG~pGsGKTT~ 16 (173)
T PRK00625 2 QIFLCGLPTVGKTSF 16 (173)
T ss_pred EEEEECCCCCCHHHH
Confidence 378889999999874
No 497
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=32.19 E-value=16 Score=29.98 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.5
Q ss_pred EEeccCCCCcceEee
Q psy9445 158 FAYGQTGTGKTFTME 172 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm~ 172 (243)
.-.|++|+|||..+.
T Consensus 26 ~i~G~nGsGKStll~ 40 (197)
T cd03278 26 AIVGPNGSGKSNIID 40 (197)
T ss_pred EEECCCCCCHHHHHH
Confidence 367999999998774
No 498
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=32.06 E-value=15 Score=30.70 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=14.0
Q ss_pred EEEEeccCCCCcceEeecC
Q psy9445 156 TVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~ 174 (243)
.||.--..|.||||.|+-.
T Consensus 7 kIflG~apGVGKTy~ML~e 25 (211)
T PF02702_consen 7 KIFLGAAPGVGKTYAMLQE 25 (211)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 3444457999999999753
No 499
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=32.01 E-value=10 Score=33.34 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=20.0
Q ss_pred chhHHHHhcC---CceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLSG---YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~G---~n~~i~ayG~tgsGKt~Tm 171 (243)
..++..++.| ....++.||..|+|||..+
T Consensus 62 ~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 62 QRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 3344445554 4567899999999998654
No 500
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=31.99 E-value=23 Score=27.85 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-.|..|||||+.-
T Consensus 4 ~i~~~G~~GsGKst~~ 19 (171)
T PRK03731 4 PLFLVGARGCGKTTVG 19 (171)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999998754
Done!