Query psy9445
Match_columns 243
No_of_seqs 281 out of 2064
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 19:31:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wbe_C Bipolar kinesin KRP-130 100.0 8.4E-41 2.9E-45 300.2 13.7 163 79-243 26-188 (373)
2 3b6u_A Kinesin-like protein KI 100.0 2.8E-40 9.7E-45 296.1 12.2 156 79-243 24-182 (372)
3 1x88_A Kinesin-like protein KI 100.0 1.8E-40 6.1E-45 296.9 10.3 164 79-243 11-178 (359)
4 1t5c_A CENP-E protein, centrom 100.0 2.7E-40 9.2E-45 294.6 10.8 149 79-243 7-156 (349)
5 1bg2_A Kinesin; motor protein, 100.0 5.3E-40 1.8E-44 290.3 12.0 148 79-243 10-158 (325)
6 3bfn_A Kinesin-like protein KI 100.0 4.8E-40 1.6E-44 295.7 11.4 152 79-243 24-179 (388)
7 2zfi_A Kinesin-like protein KI 100.0 5.6E-40 1.9E-44 294.4 11.5 155 79-243 7-171 (366)
8 1goj_A Kinesin, kinesin heavy 100.0 1.1E-39 3.8E-44 291.2 13.2 153 79-243 9-162 (355)
9 3lre_A Kinesin-like protein KI 100.0 1.5E-39 5E-44 290.6 12.8 151 79-243 13-182 (355)
10 2vvg_A Kinesin-2; motor protei 100.0 4.6E-40 1.6E-44 293.0 9.6 151 79-243 7-166 (350)
11 4a14_A Kinesin, kinesin-like p 100.0 1.1E-39 3.9E-44 290.4 12.0 154 79-243 14-168 (344)
12 3gbj_A KIF13B protein; kinesin 100.0 1E-39 3.5E-44 291.5 11.3 153 79-243 4-173 (354)
13 2y65_A Kinesin, kinesin heavy 100.0 5E-39 1.7E-43 287.8 13.3 148 79-243 14-165 (365)
14 2owm_A Nckin3-434, related to 100.0 2.9E-39 1E-43 295.6 11.9 154 79-243 41-222 (443)
15 2heh_A KIF2C protein; kinesin, 100.0 2.9E-39 1E-43 290.5 9.6 156 80-243 55-218 (387)
16 3cob_A Kinesin heavy chain-lik 100.0 1.2E-38 4.1E-43 285.5 13.4 151 79-243 8-160 (369)
17 1v8k_A Kinesin-like protein KI 100.0 5.3E-39 1.8E-43 290.5 9.7 156 80-243 75-238 (410)
18 2h58_A Kinesin-like protein KI 100.0 3.8E-38 1.3E-42 278.9 14.5 150 79-243 7-161 (330)
19 3u06_A Protein claret segregat 100.0 4.9E-38 1.7E-42 285.2 13.1 162 69-243 48-219 (412)
20 3t0q_A AGR253WP; kinesin, alph 100.0 3.7E-38 1.3E-42 281.1 11.6 141 79-233 8-154 (349)
21 3nwn_A Kinesin-like protein KI 100.0 4.9E-38 1.7E-42 280.8 12.1 142 79-233 27-176 (359)
22 1ry6_A Internal kinesin; kines 100.0 3.1E-38 1.1E-42 282.2 10.5 148 80-233 4-159 (360)
23 1f9v_A Kinesin-like protein KA 100.0 4.9E-38 1.7E-42 280.0 11.1 142 79-234 6-154 (347)
24 2rep_A Kinesin-like protein KI 100.0 6.3E-38 2.1E-42 281.5 11.0 157 79-243 25-203 (376)
25 3dc4_A Kinesin-like protein NO 100.0 2.5E-37 8.6E-42 274.8 11.0 144 79-235 25-174 (344)
26 2nr8_A Kinesin-like protein KI 100.0 7.2E-37 2.5E-41 273.1 11.9 151 79-243 26-189 (358)
27 4etp_A Kinesin-like protein KA 100.0 7.4E-37 2.5E-41 277.3 11.7 150 70-233 49-209 (403)
28 4h1g_A Maltose binding protein 100.0 7.5E-33 2.5E-37 268.0 11.7 123 106-242 415-541 (715)
29 1x88_A Kinesin-like protein KI 99.9 1.6E-25 5.6E-30 200.1 6.1 96 1-96 219-314 (359)
30 3lre_A Kinesin-like protein KI 99.9 1E-24 3.4E-29 194.7 7.3 96 1-96 221-319 (355)
31 2vvg_A Kinesin-2; motor protei 99.9 1.1E-24 3.6E-29 194.0 7.2 95 1-96 205-299 (350)
32 2h58_A Kinesin-like protein KI 99.9 2.8E-24 9.7E-29 190.0 8.0 93 1-96 200-292 (330)
33 1f9v_A Kinesin-like protein KA 99.9 2.7E-24 9.1E-29 191.4 7.4 93 1-96 210-305 (347)
34 3t0q_A AGR253WP; kinesin, alph 99.9 3.4E-24 1.2E-28 191.0 8.0 94 1-97 213-309 (349)
35 3bfn_A Kinesin-like protein KI 99.9 2.9E-24 9.8E-29 193.2 7.3 94 1-96 218-311 (388)
36 2wbe_C Bipolar kinesin KRP-130 99.9 5.6E-25 1.9E-29 197.4 2.4 96 1-96 229-325 (373)
37 3cob_A Kinesin heavy chain-lik 99.9 3.4E-24 1.1E-28 191.9 7.4 93 1-96 199-291 (369)
38 2rep_A Kinesin-like protein KI 99.9 2.8E-24 9.5E-29 192.9 6.9 93 1-96 244-340 (376)
39 2o0a_A S.cerevisiae chromosome 99.9 6E-24 2E-28 180.9 7.8 141 64-241 8-157 (298)
40 1bg2_A Kinesin; motor protein, 99.9 1.9E-24 6.3E-29 190.9 4.1 94 1-97 197-290 (325)
41 3b6u_A Kinesin-like protein KI 99.9 1.3E-24 4.6E-29 194.6 3.1 96 1-96 221-317 (372)
42 1t5c_A CENP-E protein, centrom 99.9 5.9E-24 2E-28 189.2 6.4 96 1-96 195-294 (349)
43 4a14_A Kinesin, kinesin-like p 99.9 7.5E-24 2.6E-28 188.5 6.9 96 1-96 207-310 (344)
44 3gbj_A KIF13B protein; kinesin 99.9 9.5E-24 3.2E-28 188.3 7.2 96 1-96 212-314 (354)
45 1goj_A Kinesin, kinesin heavy 99.9 1.2E-23 4E-28 187.7 7.4 93 1-96 201-294 (355)
46 2zfi_A Kinesin-like protein KI 99.9 7.1E-24 2.4E-28 189.9 5.7 96 1-96 210-318 (366)
47 2nr8_A Kinesin-like protein KI 99.9 4.4E-24 1.5E-28 190.6 4.2 95 1-96 227-322 (358)
48 3nwn_A Kinesin-like protein KI 99.9 4.5E-24 1.5E-28 190.6 4.2 95 1-96 228-323 (359)
49 4etp_A Kinesin-like protein KA 99.9 1E-23 3.5E-28 191.1 6.6 93 1-96 266-361 (403)
50 3dc4_A Kinesin-like protein NO 99.9 6.9E-24 2.4E-28 188.4 5.3 88 1-97 213-300 (344)
51 2owm_A Nckin3-434, related to 99.9 1.2E-23 4.3E-28 192.3 7.2 96 1-96 261-379 (443)
52 2y65_A Kinesin, kinesin heavy 99.9 5.5E-24 1.9E-28 190.4 4.4 93 1-96 204-297 (365)
53 1ry6_A Internal kinesin; kines 99.9 3.8E-23 1.3E-27 184.6 6.5 90 1-96 205-295 (360)
54 4h1g_A Maltose binding protein 99.9 1.5E-22 5.1E-27 195.9 7.5 93 1-96 582-675 (715)
55 2heh_A KIF2C protein; kinesin, 99.9 8.3E-23 2.8E-27 183.6 3.7 88 1-96 257-345 (387)
56 1v8k_A Kinesin-like protein KI 99.9 1.1E-22 3.8E-27 183.9 3.7 88 1-96 277-365 (410)
57 3u06_A Protein claret segregat 99.8 5.4E-22 1.8E-26 180.0 6.3 89 1-96 258-346 (412)
58 2kin_B Kinesin; motor protein, 98.1 3.2E-07 1.1E-11 66.8 0.0 38 58-95 1-39 (100)
59 3kin_B Kinesin heavy chain; mo 97.2 4.2E-05 1.4E-09 57.2 -0.2 34 62-95 1-35 (117)
60 3ec2_A DNA replication protein 93.3 0.0093 3.2E-07 46.7 -1.3 49 122-171 7-55 (180)
61 4etp_B Spindle POLE BODY-assoc 93.1 0.27 9.3E-06 42.3 7.4 136 62-232 41-183 (333)
62 2w58_A DNAI, primosome compone 90.8 0.056 1.9E-06 42.8 0.6 51 121-172 21-72 (202)
63 2qgz_A Helicase loader, putati 89.9 0.059 2E-06 46.4 -0.0 20 154-173 152-171 (308)
64 1jbk_A CLPB protein; beta barr 88.9 0.1 3.6E-06 39.9 0.7 30 143-172 32-61 (195)
65 2p65_A Hypothetical protein PF 87.3 0.11 3.9E-06 39.7 0.0 30 143-172 32-61 (187)
66 3te6_A Regulatory protein SIR3 87.2 0.098 3.3E-06 45.4 -0.5 23 149-171 40-62 (318)
67 3t15_A Ribulose bisphosphate c 86.8 0.18 6.1E-06 42.8 1.0 49 155-203 37-91 (293)
68 2bjv_A PSP operon transcriptio 86.7 0.17 6E-06 41.8 0.9 19 153-171 28-46 (265)
69 2v1u_A Cell division control p 82.6 0.21 7.3E-06 43.0 -0.5 20 152-171 42-61 (387)
70 1g8p_A Magnesium-chelatase 38 82.0 0.32 1.1E-05 41.6 0.4 44 120-171 19-62 (350)
71 1qde_A EIF4A, translation init 82.0 0.48 1.6E-05 37.8 1.5 24 145-170 44-67 (224)
72 3bos_A Putative DNA replicatio 82.0 0.58 2E-05 37.3 2.0 20 152-171 50-69 (242)
73 2kjq_A DNAA-related protein; s 81.8 0.39 1.3E-05 36.5 0.8 18 155-172 37-54 (149)
74 3h4m_A Proteasome-activating n 81.1 0.31 1.1E-05 40.5 0.0 52 121-172 13-69 (285)
75 1d2n_A N-ethylmaleimide-sensit 81.0 0.7 2.4E-05 38.2 2.2 21 151-171 61-81 (272)
76 2chg_A Replication factor C sm 80.8 0.38 1.3E-05 37.6 0.5 20 152-171 36-55 (226)
77 2gxq_A Heat resistant RNA depe 80.7 0.55 1.9E-05 36.8 1.4 24 145-170 31-54 (207)
78 1p9r_A General secretion pathw 80.3 0.58 2E-05 42.0 1.6 28 145-172 158-185 (418)
79 3jvv_A Twitching mobility prot 80.2 0.57 2E-05 41.1 1.4 30 143-172 112-141 (356)
80 2r62_A Cell division protease 78.3 0.39 1.3E-05 39.6 -0.2 50 121-171 7-61 (268)
81 1vec_A ATP-dependent RNA helic 78.2 1.1 3.9E-05 35.0 2.5 25 145-171 33-57 (206)
82 3uk6_A RUVB-like 2; hexameric 78.2 0.79 2.7E-05 39.5 1.7 30 143-172 57-88 (368)
83 3co5_A Putative two-component 77.9 0.58 2E-05 35.0 0.6 20 153-172 26-45 (143)
84 1fnn_A CDC6P, cell division co 77.3 0.65 2.2E-05 40.1 0.9 27 145-171 32-61 (389)
85 3cf0_A Transitional endoplasmi 77.1 0.57 2E-05 39.7 0.4 18 154-171 49-66 (301)
86 3n70_A Transport activator; si 77.0 0.74 2.5E-05 34.4 1.0 20 152-171 22-41 (145)
87 2c9o_A RUVB-like 1; hexameric 76.9 0.9 3.1E-05 40.9 1.7 45 122-171 34-80 (456)
88 4b4t_M 26S protease regulatory 76.7 0.64 2.2E-05 42.0 0.7 75 123-205 179-272 (434)
89 3dkp_A Probable ATP-dependent 76.6 1.2 3.9E-05 36.1 2.2 24 145-170 59-82 (245)
90 3d8b_A Fidgetin-like protein 1 76.5 0.45 1.6E-05 41.4 -0.4 20 152-171 115-134 (357)
91 2x8a_A Nuclear valosin-contain 76.1 0.21 7.1E-06 42.1 -2.6 50 122-171 7-61 (274)
92 3b9p_A CG5977-PA, isoform A; A 75.8 0.55 1.9E-05 39.3 0.0 18 154-171 54-71 (297)
93 3bor_A Human initiation factor 75.6 0.72 2.5E-05 37.4 0.7 25 145-171 60-84 (237)
94 1ixz_A ATP-dependent metallopr 75.4 0.58 2E-05 38.3 0.0 16 156-171 51-66 (254)
95 2qby_A CDC6 homolog 1, cell di 74.9 0.59 2E-05 40.1 -0.1 20 152-171 43-62 (386)
96 3fmo_B ATP-dependent RNA helic 74.7 1.3 4.4E-05 37.5 2.0 27 145-171 122-148 (300)
97 2eyu_A Twitching motility prot 74.5 1.1 3.9E-05 37.3 1.6 18 154-171 25-42 (261)
98 4b4t_K 26S protease regulatory 74.5 3.1 0.00011 37.4 4.6 76 123-206 170-264 (428)
99 3ly5_A ATP-dependent RNA helic 74.4 0.93 3.2E-05 37.5 1.1 24 145-170 84-107 (262)
100 1tue_A Replication protein E1; 74.4 0.92 3.1E-05 36.9 1.0 26 146-171 48-75 (212)
101 1u0j_A DNA replication protein 74.3 1.4 4.7E-05 37.2 2.1 27 145-171 92-121 (267)
102 1sxj_D Activator 1 41 kDa subu 74.3 0.78 2.7E-05 39.1 0.6 24 148-171 52-75 (353)
103 2qz4_A Paraplegin; AAA+, SPG7, 74.2 0.94 3.2E-05 36.8 1.0 19 153-171 38-56 (262)
104 3iuy_A Probable ATP-dependent 74.1 1.4 4.9E-05 35.1 2.1 25 145-171 50-74 (228)
105 2pl3_A Probable ATP-dependent 73.9 1.5 5.2E-05 35.2 2.2 24 145-170 55-78 (236)
106 1xwi_A SKD1 protein; VPS4B, AA 73.7 0.63 2.2E-05 39.9 -0.2 83 123-205 10-103 (322)
107 1l8q_A Chromosomal replication 73.0 0.73 2.5E-05 39.2 0.0 19 154-172 37-55 (324)
108 1wrb_A DJVLGB; RNA helicase, D 72.9 1.6 5.6E-05 35.4 2.2 25 145-171 53-77 (253)
109 2qby_B CDC6 homolog 3, cell di 72.9 0.98 3.4E-05 38.9 0.9 27 145-171 35-62 (384)
110 2ewv_A Twitching motility prot 72.6 1.2 4.2E-05 39.1 1.5 28 144-171 126-153 (372)
111 3pvs_A Replication-associated 72.5 1.8 6.3E-05 39.0 2.6 40 132-172 29-68 (447)
112 3syl_A Protein CBBX; photosynt 72.5 1.5 5.2E-05 36.6 1.9 19 153-171 66-84 (309)
113 1t6n_A Probable ATP-dependent 72.1 1.8 6E-05 34.3 2.2 25 145-171 44-68 (220)
114 1sxj_C Activator 1 40 kDa subu 72.1 0.91 3.1E-05 38.9 0.5 24 149-172 41-64 (340)
115 3b6e_A Interferon-induced heli 72.0 0.65 2.2E-05 36.5 -0.5 25 146-172 42-66 (216)
116 3fmp_B ATP-dependent RNA helic 70.8 1.8 6.2E-05 38.7 2.2 26 145-170 122-147 (479)
117 3eiq_A Eukaryotic initiation f 70.5 2 6.8E-05 37.2 2.3 25 145-171 70-94 (414)
118 1lv7_A FTSH; alpha/beta domain 70.4 1.3 4.4E-05 36.2 1.0 18 154-171 45-62 (257)
119 1iy2_A ATP-dependent metallopr 70.0 0.92 3.2E-05 37.7 0.0 16 156-171 75-90 (278)
120 2oxc_A Probable ATP-dependent 69.9 2.1 7.2E-05 34.3 2.2 24 145-170 54-77 (230)
121 3ber_A Probable ATP-dependent 69.7 2.1 7.2E-05 35.0 2.2 25 145-171 73-97 (249)
122 3fe2_A Probable ATP-dependent 69.3 1.9 6.7E-05 34.8 1.9 25 145-171 59-83 (242)
123 1njg_A DNA polymerase III subu 68.9 1.1 3.7E-05 35.3 0.2 17 155-171 46-62 (250)
124 3llm_A ATP-dependent RNA helic 68.6 2.3 7.8E-05 34.3 2.1 25 144-170 68-92 (235)
125 1gvn_B Zeta; postsegregational 68.5 2.3 7.8E-05 35.8 2.2 31 141-171 15-50 (287)
126 3pfi_A Holliday junction ATP-d 68.3 2 6.8E-05 36.5 1.8 20 152-171 53-72 (338)
127 4b4t_I 26S protease regulatory 67.9 4.9 0.00017 36.2 4.3 76 123-206 180-274 (437)
128 3eie_A Vacuolar protein sortin 67.8 1.6 5.4E-05 37.2 1.0 17 155-171 52-68 (322)
129 1ofh_A ATP-dependent HSL prote 67.6 1.5 5.1E-05 36.5 0.8 18 154-171 50-67 (310)
130 2z4s_A Chromosomal replication 67.3 1.1 3.9E-05 40.2 0.0 19 154-172 130-148 (440)
131 1iqp_A RFCS; clamp loader, ext 67.1 1.4 4.7E-05 36.9 0.5 21 151-171 43-63 (327)
132 3fht_A ATP-dependent RNA helic 66.9 2.4 8.1E-05 36.6 2.0 27 145-171 55-81 (412)
133 2qp9_X Vacuolar protein sortin 66.5 1.4 4.6E-05 38.4 0.4 17 155-171 85-101 (355)
134 4b3f_X DNA-binding protein smu 66.4 1.7 5.8E-05 41.0 1.0 27 146-173 198-224 (646)
135 1q0u_A Bstdead; DEAD protein, 66.2 1.6 5.3E-05 34.7 0.6 24 145-170 34-57 (219)
136 2fz4_A DNA repair protein RAD2 65.8 2.5 8.7E-05 34.3 1.9 26 146-173 102-127 (237)
137 2j0s_A ATP-dependent RNA helic 65.5 2.8 9.5E-05 36.4 2.2 25 145-171 67-91 (410)
138 2oap_1 GSPE-2, type II secreti 64.5 1.8 6.1E-05 39.8 0.8 19 151-171 259-277 (511)
139 3fho_A ATP-dependent RNA helic 64.5 2.3 8E-05 38.7 1.5 26 145-170 149-174 (508)
140 1in4_A RUVB, holliday junction 64.0 1.4 4.9E-05 37.8 0.0 17 155-171 52-68 (334)
141 3pey_A ATP-dependent RNA helic 63.9 2.9 0.0001 35.7 2.0 27 145-171 35-61 (395)
142 4b4t_L 26S protease subunit RP 63.9 1.9 6.5E-05 38.9 0.8 76 122-205 178-272 (437)
143 4gp7_A Metallophosphoesterase; 63.3 1.6 5.6E-05 33.5 0.2 17 156-172 11-27 (171)
144 3hu3_A Transitional endoplasmi 62.9 2.1 7.2E-05 39.1 0.9 20 152-171 236-255 (489)
145 3oiy_A Reverse gyrase helicase 62.7 2.7 9.2E-05 36.7 1.6 24 145-170 29-52 (414)
146 1w5s_A Origin recognition comp 62.6 2 6.9E-05 37.2 0.7 25 147-171 40-69 (412)
147 1n0w_A DNA repair protein RAD5 62.5 2.5 8.7E-05 33.7 1.3 29 143-171 10-41 (243)
148 2jlq_A Serine protease subunit 62.4 2.9 9.8E-05 37.5 1.7 25 145-170 11-35 (451)
149 4b4t_J 26S protease regulatory 62.2 2.2 7.4E-05 38.2 0.8 77 122-206 145-240 (405)
150 1s2m_A Putative ATP-dependent 61.9 3.2 0.00011 35.8 1.9 25 145-171 51-75 (400)
151 2zan_A Vacuolar protein sortin 61.7 1.5 5E-05 39.5 -0.4 17 155-171 168-184 (444)
152 3i5x_A ATP-dependent RNA helic 60.9 4.2 0.00014 37.1 2.6 26 145-170 102-127 (563)
153 3h1t_A Type I site-specific re 60.7 2.1 7.3E-05 39.5 0.5 27 145-172 190-216 (590)
154 1ojl_A Transcriptional regulat 60.3 2.6 8.8E-05 35.7 1.0 20 152-171 23-42 (304)
155 3u61_B DNA polymerase accessor 60.3 2.4 8.2E-05 35.8 0.8 19 154-172 48-66 (324)
156 1hqc_A RUVB; extended AAA-ATPa 60.2 2.9 0.0001 35.0 1.3 19 153-171 37-55 (324)
157 2z0m_A 337AA long hypothetical 60.1 4.1 0.00014 33.9 2.2 26 145-172 24-49 (337)
158 4fcw_A Chaperone protein CLPB; 59.7 2.9 0.0001 34.8 1.2 17 155-171 48-64 (311)
159 3pxg_A Negative regulator of g 59.7 3.7 0.00013 37.1 1.9 29 145-173 192-220 (468)
160 2chq_A Replication factor C sm 59.1 2.2 7.4E-05 35.6 0.3 20 152-171 36-55 (319)
161 1sxj_E Activator 1 40 kDa subu 59.1 2.3 7.9E-05 36.2 0.5 15 157-171 39-53 (354)
162 2i4i_A ATP-dependent RNA helic 59.1 4.2 0.00014 35.2 2.2 24 146-171 46-69 (417)
163 2db3_A ATP-dependent RNA helic 59.0 4.2 0.00014 36.0 2.2 24 145-170 86-109 (434)
164 3b85_A Phosphate starvation-in 58.8 3.3 0.00011 33.2 1.3 25 145-171 15-39 (208)
165 3lw7_A Adenylate kinase relate 58.6 2.8 9.5E-05 31.2 0.8 16 156-171 3-18 (179)
166 2v1x_A ATP-dependent DNA helic 58.5 5.1 0.00017 37.4 2.7 26 144-171 51-76 (591)
167 3vfd_A Spastin; ATPase, microt 58.2 3 0.0001 36.5 1.0 18 154-171 148-165 (389)
168 3hws_A ATP-dependent CLP prote 58.1 2.8 9.6E-05 36.2 0.8 18 154-171 51-68 (363)
169 1w36_D RECD, exodeoxyribonucle 57.9 2.3 7.8E-05 39.9 0.2 19 154-172 164-182 (608)
170 1um8_A ATP-dependent CLP prote 57.6 2.9 9.8E-05 36.3 0.8 18 154-171 72-89 (376)
171 3sop_A Neuronal-specific septi 57.4 2.7 9.1E-05 35.2 0.5 19 153-171 1-19 (270)
172 1sxj_B Activator 1 37 kDa subu 56.7 3.8 0.00013 34.1 1.4 21 151-171 39-59 (323)
173 4b4t_H 26S protease regulatory 56.5 2.8 9.6E-05 38.1 0.6 77 122-206 206-301 (467)
174 4ag6_A VIRB4 ATPase, type IV s 56.3 2.3 7.8E-05 37.3 -0.1 18 154-171 35-52 (392)
175 2qnr_A Septin-2, protein NEDD5 55.8 2.7 9.1E-05 35.7 0.3 24 148-171 12-35 (301)
176 1ye8_A Protein THEP1, hypothet 55.4 2.5 8.5E-05 32.9 0.0 15 157-171 3-17 (178)
177 3tr0_A Guanylate kinase, GMP k 55.4 2.7 9.2E-05 32.7 0.2 15 157-171 10-24 (205)
178 2qag_C Septin-7; cell cycle, c 55.3 2.8 9.4E-05 37.6 0.3 23 149-171 26-48 (418)
179 1ly1_A Polynucleotide kinase; 55.2 3.8 0.00013 30.9 1.0 16 156-171 4-19 (181)
180 1e9r_A Conjugal transfer prote 55.1 2.4 8.1E-05 37.7 -0.2 18 154-171 53-70 (437)
181 1xti_A Probable ATP-dependent 55.0 5.6 0.00019 34.0 2.2 25 145-171 38-62 (391)
182 1qhx_A CPT, protein (chloramph 54.4 3.9 0.00013 30.9 1.0 16 156-171 5-20 (178)
183 2r44_A Uncharacterized protein 54.2 2.3 7.8E-05 36.1 -0.4 22 148-171 42-63 (331)
184 1kgd_A CASK, peripheral plasma 54.1 2.9 0.0001 32.2 0.2 16 156-171 7-22 (180)
185 3a00_A Guanylate kinase, GMP k 54.0 2.7 9.3E-05 32.5 0.0 15 157-171 4-18 (186)
186 3tau_A Guanylate kinase, GMP k 53.5 3 0.0001 33.0 0.2 16 156-171 10-25 (208)
187 3sqw_A ATP-dependent RNA helic 53.5 6.6 0.00022 36.2 2.6 26 145-170 51-76 (579)
188 4a2p_A RIG-I, retinoic acid in 53.2 5.9 0.0002 35.6 2.2 25 145-171 15-39 (556)
189 3trf_A Shikimate kinase, SK; a 53.0 4.3 0.00015 31.0 1.0 16 156-171 7-22 (185)
190 1qvr_A CLPB protein; coiled co 52.9 2.2 7.6E-05 41.6 -0.8 31 143-173 180-210 (854)
191 3upu_A ATP-dependent DNA helic 52.9 3.8 0.00013 36.8 0.8 35 132-171 28-62 (459)
192 2p5t_B PEZT; postsegregational 52.8 5.2 0.00018 32.6 1.6 16 155-170 33-48 (253)
193 3lfu_A DNA helicase II; SF1 he 52.7 3.6 0.00012 38.3 0.7 20 154-173 22-41 (647)
194 2r8r_A Sensor protein; KDPD, P 52.7 2.9 0.0001 34.3 0.0 19 155-173 7-25 (228)
195 1lvg_A Guanylate kinase, GMP k 52.5 3 0.0001 32.8 0.0 15 157-171 7-21 (198)
196 3iij_A Coilin-interacting nucl 52.4 4.1 0.00014 31.1 0.8 16 156-171 13-28 (180)
197 3cf2_A TER ATPase, transitiona 52.2 4.2 0.00014 39.6 1.1 84 122-205 201-295 (806)
198 1rj9_A FTSY, signal recognitio 51.6 3.8 0.00013 34.9 0.6 16 156-171 104-119 (304)
199 3b9q_A Chloroplast SRP recepto 51.5 3.4 0.00012 35.2 0.2 16 156-171 102-117 (302)
200 2gk6_A Regulator of nonsense t 51.2 4.3 0.00015 38.1 0.9 17 156-172 197-213 (624)
201 2b8t_A Thymidine kinase; deoxy 51.2 2.7 9.2E-05 34.2 -0.4 19 155-173 13-31 (223)
202 2ehv_A Hypothetical protein PH 51.1 3.5 0.00012 33.0 0.2 17 156-172 32-48 (251)
203 3pxi_A Negative regulator of g 50.8 6.6 0.00023 37.6 2.2 29 145-173 192-220 (758)
204 2fwr_A DNA repair protein RAD2 50.8 5.1 0.00018 35.6 1.3 25 146-172 102-126 (472)
205 1lkx_A Myosin IE heavy chain; 50.6 4.9 0.00017 38.5 1.2 20 151-170 91-110 (697)
206 2bdt_A BH3686; alpha-beta prot 50.3 3.7 0.00013 31.6 0.2 16 156-171 4-19 (189)
207 1zp6_A Hypothetical protein AT 50.3 4.9 0.00017 30.8 1.0 17 155-171 10-26 (191)
208 1znw_A Guanylate kinase, GMP k 50.3 3.7 0.00013 32.4 0.2 15 157-171 23-37 (207)
209 1rz3_A Hypothetical protein rb 50.2 4.9 0.00017 31.5 1.0 18 154-171 22-39 (201)
210 2orw_A Thymidine kinase; TMTK, 50.2 2.8 9.7E-05 32.7 -0.4 18 156-173 5-22 (184)
211 2ykg_A Probable ATP-dependent 50.2 7 0.00024 36.6 2.2 24 145-170 21-44 (696)
212 1r6b_X CLPA protein; AAA+, N-t 49.7 3.9 0.00013 39.1 0.3 61 145-205 198-276 (758)
213 1jr3_A DNA polymerase III subu 49.6 3.8 0.00013 35.0 0.2 18 154-171 38-55 (373)
214 1sxj_A Activator 1 95 kDa subu 49.5 4.1 0.00014 37.2 0.5 17 155-171 78-94 (516)
215 1kag_A SKI, shikimate kinase I 49.3 4.8 0.00017 30.2 0.8 16 156-171 6-21 (173)
216 2w0m_A SSO2452; RECA, SSPF, un 49.2 3.9 0.00013 32.1 0.2 28 144-171 10-40 (235)
217 3tbk_A RIG-I helicase domain; 49.2 7.5 0.00026 34.8 2.2 25 145-171 12-36 (555)
218 1kht_A Adenylate kinase; phosp 48.9 4.9 0.00017 30.6 0.8 15 156-170 5-19 (192)
219 2cvh_A DNA repair and recombin 48.6 8.9 0.0003 29.8 2.3 28 144-171 7-37 (220)
220 1w9i_A Myosin II heavy chain; 48.6 5.5 0.00019 38.6 1.2 21 151-171 169-189 (770)
221 3lnc_A Guanylate kinase, GMP k 48.6 4.8 0.00016 32.1 0.7 15 157-171 30-44 (231)
222 2dr3_A UPF0273 protein PH0284; 48.5 9 0.00031 30.3 2.4 28 144-171 10-40 (247)
223 1rif_A DAR protein, DNA helica 48.5 5.1 0.00017 33.1 0.8 25 146-172 122-146 (282)
224 2px0_A Flagellar biosynthesis 48.3 4.1 0.00014 34.5 0.2 17 156-172 107-123 (296)
225 1fuu_A Yeast initiation factor 48.2 4.3 0.00015 34.7 0.4 24 145-170 51-74 (394)
226 3vaa_A Shikimate kinase, SK; s 48.1 5.6 0.00019 31.0 1.0 16 156-171 27-42 (199)
227 2v26_A Myosin VI; calmodulin-b 48.1 5.6 0.00019 38.6 1.2 20 151-170 137-156 (784)
228 2ze6_A Isopentenyl transferase 47.7 5.3 0.00018 32.8 0.8 15 156-170 3-17 (253)
229 2i3b_A HCR-ntpase, human cance 47.6 3.9 0.00013 32.2 -0.0 15 157-171 4-18 (189)
230 4gl2_A Interferon-induced heli 47.3 7.4 0.00025 36.4 1.9 25 145-171 15-39 (699)
231 1hv8_A Putative ATP-dependent 47.3 7.9 0.00027 32.5 1.9 25 146-171 37-61 (367)
232 2dhr_A FTSH; AAA+ protein, hex 47.2 4 0.00014 37.4 0.0 16 156-171 66-81 (499)
233 4a74_A DNA repair and recombin 47.1 4.4 0.00015 31.9 0.2 28 144-171 12-42 (231)
234 3kb2_A SPBC2 prophage-derived 46.7 5.7 0.00019 29.6 0.8 16 156-171 3-18 (173)
235 1kk8_A Myosin heavy chain, str 46.7 6 0.0002 38.7 1.1 20 151-170 166-185 (837)
236 3uie_A Adenylyl-sulfate kinase 46.6 8.7 0.0003 29.8 1.9 17 154-170 25-41 (200)
237 1wp9_A ATP-dependent RNA helic 46.3 5.3 0.00018 34.7 0.7 26 145-173 17-42 (494)
238 3c8u_A Fructokinase; YP_612366 46.3 5.2 0.00018 31.5 0.5 17 155-171 23-39 (208)
239 2rhm_A Putative kinase; P-loop 46.3 5.7 0.0002 30.3 0.8 17 155-171 6-22 (193)
240 1w7j_A Myosin VA; motor protei 46.0 6.3 0.00021 38.3 1.2 20 151-170 153-172 (795)
241 3nbx_X ATPase RAVA; AAA+ ATPas 46.0 5.7 0.00019 36.4 0.8 24 146-171 35-58 (500)
242 2pt7_A CAG-ALFA; ATPase, prote 45.8 4.1 0.00014 35.1 -0.2 19 151-171 170-188 (330)
243 3e70_C DPA, signal recognition 45.7 4.7 0.00016 34.7 0.2 17 155-171 130-146 (328)
244 4db1_A Myosin-7; S1DC, cardiac 45.7 6.4 0.00022 38.2 1.2 21 151-171 168-188 (783)
245 2gza_A Type IV secretion syste 45.7 4.1 0.00014 35.4 -0.2 20 150-171 173-192 (361)
246 1g8x_A Myosin II heavy chain f 45.7 6.3 0.00022 39.4 1.1 20 151-170 169-188 (1010)
247 2qor_A Guanylate kinase; phosp 45.6 5.9 0.0002 31.0 0.8 16 156-171 14-29 (204)
248 2og2_A Putative signal recogni 45.4 4.8 0.00016 35.2 0.2 17 155-171 158-174 (359)
249 1z6g_A Guanylate kinase; struc 45.0 4.6 0.00016 32.3 0.0 14 158-171 27-40 (218)
250 1xx6_A Thymidine kinase; NESG, 44.8 3.9 0.00013 32.3 -0.4 18 156-173 10-27 (191)
251 2ycu_A Non muscle myosin 2C, a 44.8 6.7 0.00023 39.1 1.2 20 151-170 143-162 (995)
252 2j41_A Guanylate kinase; GMP, 44.7 6.8 0.00023 30.3 1.0 16 156-171 8-23 (207)
253 3pxi_A Negative regulator of g 44.6 8.6 0.0003 36.8 1.9 16 156-171 523-538 (758)
254 1uaa_A REP helicase, protein ( 44.5 5.5 0.00019 37.5 0.5 20 154-173 15-34 (673)
255 3t5d_A Septin-7; GTP-binding p 44.1 8.5 0.00029 31.7 1.6 22 150-171 4-25 (274)
256 1moz_A ARL1, ADP-ribosylation 43.9 9.1 0.00031 28.6 1.6 27 145-171 8-35 (183)
257 1tev_A UMP-CMP kinase; ploop, 43.8 6.7 0.00023 29.8 0.8 15 156-170 5-19 (196)
258 1i84_S Smooth muscle myosin he 43.7 6.9 0.00024 39.7 1.1 21 151-171 166-186 (1184)
259 3cm0_A Adenylate kinase; ATP-b 43.7 6.7 0.00023 29.8 0.8 16 156-171 6-21 (186)
260 1e6c_A Shikimate kinase; phosp 43.4 6.8 0.00023 29.3 0.8 16 156-171 4-19 (173)
261 1uf9_A TT1252 protein; P-loop, 43.3 8.8 0.0003 29.5 1.5 20 152-171 6-25 (203)
262 1y63_A LMAJ004144AAA protein; 43.3 6.9 0.00023 30.1 0.8 15 156-170 12-26 (184)
263 1vma_A Cell division protein F 43.2 5.5 0.00019 34.0 0.2 18 155-172 105-122 (306)
264 4anj_A Unconventional myosin-V 43.2 7.3 0.00025 39.1 1.2 21 151-171 141-161 (1052)
265 1nks_A Adenylate kinase; therm 43.0 6.8 0.00023 29.7 0.8 15 156-170 3-17 (194)
266 1knq_A Gluconate kinase; ALFA/ 42.9 7.6 0.00026 29.3 1.0 16 156-171 10-25 (175)
267 2xzl_A ATP-dependent helicase 42.9 6.9 0.00024 38.0 0.9 17 156-172 377-393 (802)
268 2b6h_A ADP-ribosylation factor 42.8 11 0.00037 28.9 2.0 29 143-171 18-46 (192)
269 2vli_A Antibiotic resistance p 42.8 7.4 0.00025 29.4 0.9 16 156-171 7-22 (183)
270 1htw_A HI0065; nucleotide-bind 42.7 5.7 0.00019 30.3 0.2 16 156-171 35-50 (158)
271 2dfs_A Myosin-5A; myosin-V, in 42.6 7.5 0.00026 39.1 1.2 20 151-170 153-172 (1080)
272 3kta_A Chromosome segregation 42.6 8.6 0.00029 29.2 1.3 16 156-171 28-43 (182)
273 2ce7_A Cell division protein F 42.3 7 0.00024 35.6 0.8 17 155-171 50-66 (476)
274 1gm5_A RECG; helicase, replica 42.2 7.7 0.00026 37.6 1.2 24 148-171 383-406 (780)
275 1via_A Shikimate kinase; struc 42.2 7.2 0.00025 29.5 0.8 15 156-170 6-20 (175)
276 2v6i_A RNA helicase; membrane, 42.2 9.3 0.00032 33.9 1.6 16 156-171 4-19 (431)
277 1f2t_A RAD50 ABC-ATPase; DNA d 42.0 10 0.00034 28.4 1.5 15 157-171 26-40 (149)
278 2r2a_A Uncharacterized protein 42.0 7.4 0.00025 30.9 0.8 17 157-173 8-24 (199)
279 4a4z_A Antiviral helicase SKI2 41.8 12 0.00041 37.3 2.4 24 145-170 47-70 (997)
280 2yvu_A Probable adenylyl-sulfa 41.6 8.5 0.00029 29.4 1.1 17 155-171 14-30 (186)
281 2iyv_A Shikimate kinase, SK; t 41.1 7.8 0.00027 29.5 0.8 15 156-170 4-18 (184)
282 1c4o_A DNA nucleotide excision 41.0 9.2 0.00032 36.2 1.5 41 128-173 7-47 (664)
283 3t61_A Gluconokinase; PSI-biol 40.9 7.8 0.00027 30.1 0.8 16 156-171 20-35 (202)
284 1r6b_X CLPA protein; AAA+, N-t 40.7 12 0.0004 35.7 2.1 17 155-171 489-505 (758)
285 3e1s_A Exodeoxyribonuclease V, 40.6 6.2 0.00021 36.7 0.2 26 145-172 197-222 (574)
286 3m6a_A ATP-dependent protease 40.4 6.4 0.00022 36.3 0.2 18 154-171 108-125 (543)
287 1qvr_A CLPB protein; coiled co 40.4 10 0.00036 36.8 1.8 17 155-171 589-605 (854)
288 2pt5_A Shikimate kinase, SK; a 40.0 8.2 0.00028 28.7 0.8 15 156-170 2-16 (168)
289 3tif_A Uncharacterized ABC tra 39.9 6.6 0.00023 31.9 0.2 15 157-171 34-48 (235)
290 3rc3_A ATP-dependent RNA helic 39.6 8.1 0.00028 36.8 0.8 21 148-170 151-171 (677)
291 2bwj_A Adenylate kinase 5; pho 39.6 8.4 0.00029 29.5 0.8 16 156-171 14-29 (199)
292 2qag_A Septin-2, protein NEDD5 39.4 7.2 0.00025 33.9 0.4 24 148-171 31-54 (361)
293 2qen_A Walker-type ATPase; unk 39.3 7 0.00024 32.7 0.3 17 155-171 32-48 (350)
294 2iut_A DNA translocase FTSK; n 39.3 6.3 0.00022 36.8 0.0 18 155-172 215-232 (574)
295 2fna_A Conserved hypothetical 39.3 6.8 0.00023 32.8 0.2 17 155-171 31-47 (357)
296 1c9k_A COBU, adenosylcobinamid 39.3 9.6 0.00033 29.9 1.1 14 157-170 2-15 (180)
297 1gku_B Reverse gyrase, TOP-RG; 39.2 11 0.00039 37.6 1.9 23 145-169 64-86 (1054)
298 1s96_A Guanylate kinase, GMP k 38.9 7 0.00024 31.4 0.2 16 156-171 18-33 (219)
299 3sr0_A Adenylate kinase; phosp 38.9 8.8 0.0003 30.6 0.8 13 157-169 3-15 (206)
300 3umf_A Adenylate kinase; rossm 38.6 9 0.00031 30.9 0.8 14 156-169 31-44 (217)
301 1qf9_A UMP/CMP kinase, protein 38.5 9 0.00031 29.0 0.8 15 156-170 8-22 (194)
302 1zd8_A GTP:AMP phosphotransfer 38.4 8.9 0.0003 30.4 0.8 16 156-171 9-24 (227)
303 2yhs_A FTSY, cell division pro 38.4 7.2 0.00025 35.8 0.2 16 156-171 295-310 (503)
304 2bbw_A Adenylate kinase 4, AK4 38.2 9.8 0.00034 30.6 1.0 17 155-171 28-44 (246)
305 2z83_A Helicase/nucleoside tri 37.9 11 0.00037 33.7 1.4 15 156-170 23-37 (459)
306 1ukz_A Uridylate kinase; trans 37.8 9.4 0.00032 29.5 0.8 16 156-171 17-32 (203)
307 1aky_A Adenylate kinase; ATP:A 37.8 9.3 0.00032 30.1 0.8 15 156-170 6-20 (220)
308 3asz_A Uridine kinase; cytidin 37.8 7.4 0.00025 30.3 0.2 15 157-171 9-23 (211)
309 2wjy_A Regulator of nonsense t 37.7 6.9 0.00023 38.0 -0.0 18 156-173 373-390 (800)
310 1yks_A Genome polyprotein [con 37.7 11 0.00038 33.5 1.4 20 150-171 6-25 (440)
311 4eun_A Thermoresistant glucoki 37.7 10 0.00035 29.5 1.0 15 156-170 31-45 (200)
312 3fb4_A Adenylate kinase; psych 37.6 9.5 0.00032 29.8 0.8 15 157-171 3-17 (216)
313 4a2q_A RIG-I, retinoic acid in 37.6 14 0.00049 35.4 2.2 25 145-171 256-280 (797)
314 2c95_A Adenylate kinase 1; tra 37.5 9.4 0.00032 29.1 0.8 16 156-171 11-26 (196)
315 3a4m_A L-seryl-tRNA(SEC) kinas 37.4 9.5 0.00032 31.2 0.8 17 155-171 5-21 (260)
316 2qmh_A HPR kinase/phosphorylas 37.0 11 0.00036 30.4 1.0 18 153-170 33-50 (205)
317 1g41_A Heat shock protein HSLU 36.7 9.7 0.00033 34.3 0.8 17 155-171 51-67 (444)
318 1oyw_A RECQ helicase, ATP-depe 36.6 7.9 0.00027 35.4 0.2 26 144-171 32-57 (523)
319 3dl0_A Adenylate kinase; phosp 36.0 10 0.00036 29.6 0.8 15 157-171 3-17 (216)
320 2ged_A SR-beta, signal recogni 35.9 7.7 0.00026 29.4 0.0 19 153-171 47-65 (193)
321 1v5w_A DMC1, meiotic recombina 35.9 20 0.00067 30.7 2.7 30 143-172 108-140 (343)
322 2i1q_A DNA repair and recombin 35.7 18 0.0006 30.5 2.3 31 142-172 83-116 (322)
323 2if2_A Dephospho-COA kinase; a 35.6 11 0.00036 29.2 0.8 15 157-171 4-18 (204)
324 2gno_A DNA polymerase III, gam 35.6 11 0.00038 31.9 1.0 27 145-171 9-35 (305)
325 1ak2_A Adenylate kinase isoenz 35.6 11 0.00036 30.2 0.8 16 155-170 17-32 (233)
326 1xjc_A MOBB protein homolog; s 35.5 8.6 0.00029 29.8 0.2 16 157-172 7-22 (169)
327 2ius_A DNA translocase FTSK; n 35.5 7.9 0.00027 35.6 0.0 17 155-171 168-184 (512)
328 3a8t_A Adenylate isopentenyltr 35.4 12 0.0004 32.5 1.1 15 156-170 42-56 (339)
329 1pjr_A PCRA; DNA repair, DNA r 35.2 9.1 0.00031 36.5 0.4 21 153-173 23-43 (724)
330 2pcj_A ABC transporter, lipopr 35.0 8.6 0.0003 30.9 0.2 14 158-171 34-47 (224)
331 1zu4_A FTSY; GTPase, signal re 35.0 8.8 0.0003 32.8 0.2 17 156-172 107-123 (320)
332 2zj8_A DNA helicase, putative 34.9 10 0.00035 35.9 0.7 17 155-171 40-56 (720)
333 1zuh_A Shikimate kinase; alpha 34.9 12 0.00042 27.9 1.0 15 156-170 9-23 (168)
334 4gkp_A Spindle POLE BODY-assoc 34.8 2E+02 0.0068 24.0 8.9 89 118-233 44-135 (275)
335 1zak_A Adenylate kinase; ATP:A 34.7 11 0.00038 29.7 0.8 15 156-170 7-21 (222)
336 2cdn_A Adenylate kinase; phosp 34.6 14 0.00049 28.5 1.4 19 153-171 19-37 (201)
337 2plr_A DTMP kinase, probable t 34.3 11 0.00039 28.9 0.8 16 156-171 6-21 (213)
338 2jaq_A Deoxyguanosine kinase; 34.3 11 0.00039 28.7 0.8 14 157-170 3-16 (205)
339 3crm_A TRNA delta(2)-isopenten 34.1 14 0.00046 31.9 1.3 15 156-170 7-21 (323)
340 1pzn_A RAD51, DNA repair and r 33.9 22 0.00075 30.6 2.6 29 143-171 117-148 (349)
341 1a5t_A Delta prime, HOLB; zinc 33.8 11 0.00037 32.1 0.6 26 146-171 15-41 (334)
342 2pbr_A DTMP kinase, thymidylat 33.8 12 0.00041 28.4 0.8 15 157-171 3-17 (195)
343 2d7d_A Uvrabc system protein B 33.7 14 0.00048 34.9 1.4 91 121-222 4-97 (661)
344 2onk_A Molybdate/tungstate ABC 33.6 9.6 0.00033 31.1 0.2 15 157-171 27-41 (240)
345 2vhj_A Ntpase P4, P4; non- hyd 33.5 14 0.00048 32.0 1.3 18 155-172 124-141 (331)
346 3foz_A TRNA delta(2)-isopenten 33.3 13 0.00045 31.9 1.1 15 156-170 12-26 (316)
347 2ce2_X GTPase HRAS; signaling 33.3 14 0.00047 26.7 1.1 16 156-171 5-20 (166)
348 4ddu_A Reverse gyrase; topoiso 32.9 17 0.00058 36.6 1.9 24 145-170 86-109 (1104)
349 1e4v_A Adenylate kinase; trans 32.8 12 0.00043 29.2 0.8 14 157-170 3-16 (214)
350 2z43_A DNA repair and recombin 32.8 21 0.00072 30.2 2.3 29 143-171 93-124 (324)
351 2xgj_A ATP-dependent RNA helic 32.8 17 0.00057 36.3 1.8 23 146-170 95-117 (1010)
352 1g6h_A High-affinity branched- 32.7 10 0.00035 31.2 0.2 14 158-171 37-50 (257)
353 3aez_A Pantothenate kinase; tr 32.7 10 0.00034 32.3 0.2 16 156-171 92-107 (312)
354 1sgw_A Putative ABC transporte 32.6 9.4 0.00032 30.6 0.0 13 159-171 40-52 (214)
355 4a2w_A RIG-I, retinoic acid in 32.6 19 0.00065 35.4 2.2 26 145-172 256-281 (936)
356 2oca_A DAR protein, ATP-depend 32.5 14 0.00049 33.0 1.2 25 146-172 122-146 (510)
357 1ji0_A ABC transporter; ATP bi 32.4 10 0.00035 30.8 0.2 14 158-171 36-49 (240)
358 1cke_A CK, MSSA, protein (cyti 32.4 14 0.00048 28.9 1.0 16 156-171 7-22 (227)
359 1nlf_A Regulatory protein REPA 32.4 14 0.00047 30.4 1.0 17 155-171 31-47 (279)
360 1jjv_A Dephospho-COA kinase; P 32.3 14 0.00048 28.6 1.0 15 157-171 5-19 (206)
361 2dyk_A GTP-binding protein; GT 32.3 15 0.00051 26.6 1.1 16 156-171 3-18 (161)
362 2cbz_A Multidrug resistance-as 32.2 10 0.00036 30.7 0.2 15 157-171 34-48 (237)
363 3kl4_A SRP54, signal recogniti 32.2 11 0.00038 33.8 0.4 17 155-171 98-114 (433)
364 3gfo_A Cobalt import ATP-bindi 32.2 10 0.00036 31.6 0.2 13 159-171 39-51 (275)
365 3fvq_A Fe(3+) IONS import ATP- 32.1 10 0.00035 33.1 0.2 14 158-171 34-47 (359)
366 3exa_A TRNA delta(2)-isopenten 32.0 14 0.00049 31.8 1.1 15 156-170 5-19 (322)
367 3ney_A 55 kDa erythrocyte memb 32.0 11 0.00036 30.0 0.2 16 156-171 21-36 (197)
368 3be4_A Adenylate kinase; malar 31.9 13 0.00045 29.2 0.8 15 156-170 7-21 (217)
369 1b0u_A Histidine permease; ABC 31.9 11 0.00036 31.2 0.2 14 158-171 36-49 (262)
370 2v9p_A Replication protein E1; 31.8 11 0.00037 32.2 0.2 17 155-171 127-143 (305)
371 2yz2_A Putative ABC transporte 31.7 11 0.00037 31.2 0.2 15 157-171 36-50 (266)
372 3o8b_A HCV NS3 protease/helica 31.6 18 0.00063 34.3 1.9 17 156-172 234-250 (666)
373 1odf_A YGR205W, hypothetical 3 31.3 18 0.00061 30.4 1.5 18 154-171 31-48 (290)
374 2yyz_A Sugar ABC transporter, 31.3 11 0.00038 32.9 0.2 14 158-171 33-46 (359)
375 2zr9_A Protein RECA, recombina 31.2 21 0.00071 30.8 2.0 29 143-171 46-78 (349)
376 2p6r_A Afuhel308 helicase; pro 31.2 11 0.00038 35.5 0.3 24 146-171 34-57 (702)
377 1ypw_A Transitional endoplasmi 31.1 13 0.00045 36.0 0.8 51 121-171 200-255 (806)
378 2z0h_A DTMP kinase, thymidylat 31.0 14 0.00048 28.1 0.8 15 157-171 3-17 (197)
379 2olj_A Amino acid ABC transpor 31.0 11 0.00038 31.2 0.2 14 158-171 54-67 (263)
380 2ff7_A Alpha-hemolysin translo 31.0 11 0.00039 30.7 0.2 14 158-171 39-52 (247)
381 3auy_A DNA double-strand break 31.0 18 0.0006 31.3 1.5 16 156-171 27-42 (371)
382 3rlf_A Maltose/maltodextrin im 31.0 11 0.00038 33.2 0.2 14 158-171 33-46 (381)
383 1z47_A CYSA, putative ABC-tran 30.9 11 0.00039 32.8 0.2 14 158-171 45-58 (355)
384 3dm5_A SRP54, signal recogniti 30.9 13 0.00045 33.4 0.7 19 154-172 100-118 (443)
385 1ltq_A Polynucleotide kinase; 30.8 14 0.00048 30.5 0.8 15 156-170 4-18 (301)
386 3l9o_A ATP-dependent RNA helic 30.7 17 0.00058 36.6 1.5 24 145-170 192-215 (1108)
387 1np6_A Molybdopterin-guanine d 30.6 11 0.00039 29.1 0.2 15 157-171 9-23 (174)
388 3qks_A DNA double-strand break 30.6 19 0.00065 28.2 1.5 16 156-171 25-40 (203)
389 1zj6_A ADP-ribosylation factor 30.6 24 0.00083 26.4 2.1 23 149-171 11-33 (187)
390 1mv5_A LMRA, multidrug resista 30.5 12 0.0004 30.5 0.2 15 157-171 31-45 (243)
391 3tlx_A Adenylate kinase 2; str 30.5 14 0.00049 29.8 0.8 17 154-170 29-45 (243)
392 1g29_1 MALK, maltose transport 30.4 12 0.0004 32.9 0.2 14 158-171 33-46 (372)
393 2ghi_A Transport protein; mult 30.4 12 0.0004 30.9 0.2 15 157-171 49-63 (260)
394 2qt1_A Nicotinamide riboside k 30.3 15 0.0005 28.6 0.8 16 156-171 23-38 (207)
395 2it1_A 362AA long hypothetical 30.3 12 0.0004 32.8 0.2 14 158-171 33-46 (362)
396 1z2a_A RAS-related protein RAB 30.3 17 0.00057 26.4 1.1 18 154-171 5-22 (168)
397 1vpl_A ABC transporter, ATP-bi 30.2 12 0.0004 30.9 0.2 14 158-171 45-58 (256)
398 1ksh_A ARF-like protein 2; sma 30.1 21 0.00072 26.7 1.7 20 152-171 16-35 (186)
399 2xb4_A Adenylate kinase; ATP-b 30.0 15 0.00051 29.2 0.8 14 157-170 3-16 (223)
400 4g1u_C Hemin import ATP-bindin 30.0 12 0.00041 31.0 0.2 13 159-171 42-54 (266)
401 3u4q_A ATP-dependent helicase/ 29.9 13 0.00043 37.9 0.4 20 154-173 23-42 (1232)
402 2pez_A Bifunctional 3'-phospho 29.9 18 0.00062 27.2 1.3 16 156-171 7-22 (179)
403 1tq4_A IIGP1, interferon-induc 29.8 12 0.00042 33.3 0.3 16 156-171 71-86 (413)
404 2wwf_A Thymidilate kinase, put 29.8 15 0.00052 28.3 0.8 16 156-171 12-27 (212)
405 2v3c_C SRP54, signal recogniti 29.7 15 0.0005 32.9 0.8 18 155-172 100-117 (432)
406 1w4r_A Thymidine kinase; type 29.6 21 0.00072 28.3 1.6 15 154-168 20-34 (195)
407 2pze_A Cystic fibrosis transme 29.4 12 0.00042 30.0 0.2 14 158-171 38-51 (229)
408 2nq2_C Hypothetical ABC transp 29.4 12 0.00043 30.6 0.2 14 158-171 35-48 (253)
409 3k1j_A LON protease, ATP-depen 29.3 13 0.00043 34.7 0.3 23 147-171 55-77 (604)
410 2ga8_A Hypothetical 39.9 kDa p 29.2 20 0.00067 31.4 1.5 21 151-171 21-41 (359)
411 2ihy_A ABC transporter, ATP-bi 29.2 13 0.00043 31.1 0.2 14 158-171 51-64 (279)
412 2zu0_C Probable ATP-dependent 29.2 13 0.00043 30.8 0.2 15 157-171 49-63 (267)
413 1v43_A Sugar-binding transport 29.1 13 0.00043 32.7 0.2 14 158-171 41-54 (372)
414 2eyq_A TRCF, transcription-rep 29.1 24 0.00081 35.7 2.2 20 151-170 621-640 (1151)
415 1vht_A Dephospho-COA kinase; s 29.0 16 0.00054 28.6 0.8 15 156-170 6-20 (218)
416 2d2e_A SUFC protein; ABC-ATPas 29.0 13 0.00044 30.4 0.2 14 158-171 33-46 (250)
417 1ex7_A Guanylate kinase; subst 28.9 18 0.00061 28.3 1.1 15 157-171 4-18 (186)
418 2f9l_A RAB11B, member RAS onco 28.9 13 0.00043 28.6 0.2 17 155-171 6-22 (199)
419 2zts_A Putative uncharacterize 28.9 19 0.00066 28.3 1.3 28 144-171 17-47 (251)
420 2pjz_A Hypothetical protein ST 28.8 13 0.00044 30.8 0.2 16 156-171 32-47 (263)
421 2ixe_A Antigen peptide transpo 28.7 13 0.00045 30.8 0.2 15 157-171 48-62 (271)
422 3cf2_A TER ATPase, transitiona 28.7 13 0.00044 36.2 0.2 17 155-171 512-528 (806)
423 1cr0_A DNA primase/helicase; R 28.6 13 0.00044 30.8 0.2 28 145-172 24-53 (296)
424 1u8z_A RAS-related protein RAL 28.5 19 0.00064 26.0 1.1 16 156-171 6-21 (168)
425 2qi9_C Vitamin B12 import ATP- 28.4 13 0.00045 30.4 0.2 14 158-171 30-43 (249)
426 4a15_A XPD helicase, ATP-depen 28.4 15 0.00053 34.3 0.7 38 128-171 2-39 (620)
427 2whx_A Serine protease/ntpase/ 28.4 18 0.00062 33.9 1.2 24 146-171 180-203 (618)
428 1m7g_A Adenylylsulfate kinase; 28.3 18 0.00062 28.2 1.0 17 155-171 26-42 (211)
429 1ek0_A Protein (GTP-binding pr 28.1 19 0.00066 26.1 1.1 16 156-171 5-20 (170)
430 1ky3_A GTP-binding protein YPT 28.0 19 0.00066 26.5 1.1 18 154-171 8-25 (182)
431 2va8_A SSO2462, SKI2-type heli 27.9 17 0.00059 34.2 1.0 17 155-171 47-63 (715)
432 1g16_A RAS-related protein SEC 27.5 20 0.00067 26.1 1.1 17 155-171 4-20 (170)
433 2obl_A ESCN; ATPase, hydrolase 27.5 17 0.00057 31.5 0.7 27 145-171 61-88 (347)
434 2fu5_C RAS-related protein RAB 27.5 23 0.00078 26.3 1.4 18 155-172 9-26 (183)
435 2v54_A DTMP kinase, thymidylat 27.4 18 0.00061 27.7 0.8 16 156-171 6-21 (204)
436 1sq5_A Pantothenate kinase; P- 27.4 14 0.00048 31.1 0.2 17 155-171 81-97 (308)
437 1pui_A ENGB, probable GTP-bind 27.4 14 0.00048 28.4 0.2 16 156-171 28-43 (210)
438 2o5v_A DNA replication and rep 27.4 15 0.00053 31.9 0.5 16 156-171 28-43 (359)
439 1j8m_F SRP54, signal recogniti 27.2 21 0.00072 30.0 1.3 17 156-172 100-116 (297)
440 1z0j_A RAB-22, RAS-related pro 27.2 20 0.0007 26.0 1.1 17 155-171 7-23 (170)
441 2jeo_A Uridine-cytidine kinase 27.1 14 0.0005 29.6 0.2 15 157-171 28-42 (245)
442 1nn5_A Similar to deoxythymidy 27.0 18 0.00062 27.9 0.8 16 156-171 11-26 (215)
443 3qf7_A RAD50; ABC-ATPase, ATPa 26.9 20 0.00067 31.1 1.1 14 158-171 27-40 (365)
444 1e69_A Chromosome segregation 26.8 24 0.00083 29.7 1.7 15 157-171 27-41 (322)
445 1kao_A RAP2A; GTP-binding prot 26.8 25 0.00084 25.3 1.5 17 155-171 4-20 (167)
446 3f9v_A Minichromosome maintena 26.7 19 0.00066 33.5 1.1 16 156-171 329-344 (595)
447 1wms_A RAB-9, RAB9, RAS-relate 26.7 21 0.00072 26.3 1.1 17 155-171 8-24 (177)
448 2erx_A GTP-binding protein DI- 26.6 21 0.00072 25.9 1.1 17 155-171 4-20 (172)
449 2xau_A PRE-mRNA-splicing facto 26.5 21 0.00072 34.4 1.3 14 156-169 111-124 (773)
450 3d3q_A TRNA delta(2)-isopenten 26.3 21 0.00071 30.9 1.1 15 156-170 9-23 (340)
451 3tqc_A Pantothenate kinase; bi 26.1 19 0.00065 30.8 0.8 16 156-171 94-109 (321)
452 1oix_A RAS-related protein RAB 26.1 14 0.00048 28.2 -0.0 17 155-171 30-46 (191)
453 1nrj_B SR-beta, signal recogni 26.1 26 0.0009 27.0 1.6 20 152-171 10-29 (218)
454 3ake_A Cytidylate kinase; CMP 26.1 21 0.00072 27.3 1.0 16 156-171 4-19 (208)
455 1z08_A RAS-related protein RAB 25.8 22 0.00076 25.9 1.1 17 155-171 7-23 (170)
456 1svi_A GTP-binding protein YSX 25.8 22 0.00075 26.7 1.1 17 155-171 24-40 (195)
457 3lxx_A GTPase IMAP family memb 25.7 15 0.0005 29.3 0.0 18 154-171 29-46 (239)
458 2xtp_A GTPase IMAP family memb 25.7 17 0.00057 29.3 0.4 18 154-171 22-39 (260)
459 1c1y_A RAS-related protein RAP 25.6 23 0.00078 25.6 1.1 16 156-171 5-20 (167)
460 1f6b_A SAR1; gtpases, N-termin 25.5 36 0.0012 26.0 2.3 19 153-171 24-42 (198)
461 3pqc_A Probable GTP-binding pr 25.5 22 0.00077 26.5 1.1 17 155-171 24-40 (195)
462 2y8e_A RAB-protein 6, GH09086P 25.5 23 0.00077 26.0 1.1 17 155-171 15-31 (179)
463 3gd7_A Fusion complex of cysti 25.4 16 0.00055 32.2 0.2 14 158-171 51-64 (390)
464 1r2q_A RAS-related protein RAB 25.4 23 0.00079 25.6 1.1 17 155-171 7-23 (170)
465 1nij_A Hypothetical protein YJ 25.3 18 0.00062 30.6 0.5 15 157-171 7-21 (318)
466 3d31_A Sulfate/molybdate ABC t 25.1 10 0.00036 32.9 -1.0 14 158-171 30-43 (348)
467 1svm_A Large T antigen; AAA+ f 24.9 22 0.00076 31.1 1.0 17 155-171 170-186 (377)
468 2grj_A Dephospho-COA kinase; T 24.8 26 0.00088 27.4 1.3 17 154-170 12-28 (192)
469 2bbs_A Cystic fibrosis transme 24.8 17 0.00057 30.6 0.2 14 158-171 68-81 (290)
470 3tw8_B RAS-related protein RAB 24.6 24 0.00082 25.9 1.1 17 155-171 10-26 (181)
471 3q72_A GTP-binding protein RAD 24.6 24 0.00083 25.6 1.1 16 156-171 4-19 (166)
472 2yc2_C IFT27, small RAB-relate 24.4 20 0.0007 27.1 0.6 19 154-172 20-38 (208)
473 1r8s_A ADP-ribosylation factor 24.3 25 0.00085 25.5 1.1 15 157-171 3-17 (164)
474 3con_A GTPase NRAS; structural 24.3 25 0.00084 26.4 1.1 17 155-171 22-38 (190)
475 2f1r_A Molybdopterin-guanine d 24.2 8.1 0.00028 29.8 -1.8 15 157-171 5-19 (171)
476 2lkc_A Translation initiation 24.1 25 0.00085 25.8 1.1 17 155-171 9-25 (178)
477 3r20_A Cytidylate kinase; stru 24.1 24 0.00082 28.7 1.0 16 156-171 11-26 (233)
478 1upt_A ARL1, ADP-ribosylation 24.1 25 0.00086 25.6 1.1 17 155-171 8-24 (171)
479 2fn4_A P23, RAS-related protei 24.0 25 0.00085 25.8 1.1 17 155-171 10-26 (181)
480 2wjg_A FEOB, ferrous iron tran 23.8 17 0.00057 27.3 0.0 17 155-171 8-24 (188)
481 1z0f_A RAB14, member RAS oncog 23.8 26 0.00087 25.7 1.1 17 155-171 16-32 (179)
482 1gtv_A TMK, thymidylate kinase 23.8 11 0.00039 29.2 -1.0 15 157-171 3-17 (214)
483 3vkw_A Replicase large subunit 23.6 17 0.00057 32.8 -0.0 19 156-174 163-181 (446)
484 2bme_A RAB4A, RAS-related prot 23.6 26 0.00088 26.0 1.1 17 155-171 11-27 (186)
485 4e22_A Cytidylate kinase; P-lo 23.5 25 0.00085 28.5 1.0 16 156-171 29-44 (252)
486 3qkt_A DNA double-strand break 23.5 30 0.001 29.4 1.6 15 158-172 27-41 (339)
487 4dsu_A GTPase KRAS, isoform 2B 23.1 27 0.00092 25.9 1.1 17 155-171 5-21 (189)
488 2a9k_A RAS-related protein RAL 23.1 27 0.00092 25.8 1.1 17 155-171 19-35 (187)
489 2wv9_A Flavivirin protease NS2 22.9 28 0.00096 33.0 1.4 19 151-171 240-258 (673)
490 3zvl_A Bifunctional polynucleo 22.9 25 0.00087 30.9 1.0 20 152-171 256-275 (416)
491 1u0l_A Probable GTPase ENGC; p 22.9 19 0.00066 30.1 0.2 16 156-171 171-186 (301)
492 1fzq_A ADP-ribosylation factor 22.8 38 0.0013 25.3 2.0 19 153-171 15-33 (181)
493 2bov_A RAla, RAS-related prote 22.8 27 0.00093 26.4 1.1 17 155-171 15-31 (206)
494 1uj2_A Uridine-cytidine kinase 22.8 24 0.00083 28.4 0.8 16 155-170 23-38 (252)
495 2efe_B Small GTP-binding prote 22.8 27 0.00093 25.7 1.1 18 154-171 12-29 (181)
496 1g5t_A COB(I)alamin adenosyltr 22.7 15 0.00051 29.2 -0.5 20 154-173 28-47 (196)
497 3kkq_A RAS-related protein M-R 22.7 28 0.00095 25.8 1.1 18 154-171 18-35 (183)
498 1tf7_A KAIC; homohexamer, hexa 22.6 27 0.00093 31.7 1.2 29 144-172 26-57 (525)
499 3q85_A GTP-binding protein REM 22.5 28 0.00096 25.3 1.1 16 156-171 4-19 (169)
500 3eph_A TRNA isopentenyltransfe 22.4 27 0.00092 31.1 1.1 15 156-170 4-18 (409)
No 1
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=8.4e-41 Score=300.21 Aligned_cols=163 Identities=55% Similarity=0.916 Sum_probs=138.1
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
+..+|+||++..|...+...++.+.++.++.+.++......+.|+||+||++.++|++||+.++.|+|+.+++|||+|||
T Consensus 26 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tif 105 (373)
T 2wbe_C 26 QVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVF 105 (373)
T ss_dssp EEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEE
Confidence 36789999999998777777777777777777766555567899999999999999999999999999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCCccc
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKL 238 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~~~l 238 (243)
|||||||||||||+|....+....+.....+|||||++++||+.++. .+..|.|++||+|||||+|+|||++.. ..++
T Consensus 106 AYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~-~~~l 183 (373)
T 2wbe_C 106 AYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM-MEVEYTMRISYLELYNEELCDLLSTDD-TTKI 183 (373)
T ss_dssp EECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHH-CCSCEEEEEEEEEEETTEEEESSCTTS-CSCC
T ss_pred eecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHh-cCceEEEEEEEEEEeCCeEEECCCCCC-CCCc
Confidence 99999999999999986544333444556789999999999999986 456899999999999999999999753 3556
Q ss_pred eecCC
Q psy9445 239 RLKKN 243 (243)
Q Consensus 239 ~i~e~ 243 (243)
+++||
T Consensus 184 ~i~~~ 188 (373)
T 2wbe_C 184 RIFDD 188 (373)
T ss_dssp CEEEC
T ss_pred eeEec
Confidence 66654
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.8e-40 Score=296.13 Aligned_cols=156 Identities=39% Similarity=0.707 Sum_probs=131.9
Q ss_pred CCCcccCCCcchhhcccceeeeecCC-ceEEEEecCCC--CCcceEEecceeecCCCcchhhhccccchhHHHHhcCCce
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSS-SREITIKERVN--DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNC 155 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~-~~ti~v~~~~~--~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~ 155 (243)
+..+|+||++..|...+...++.+.. ..++.+..+.. ....+.|+||+||++.++|++||+.++.|+|+.+++|||+
T Consensus 24 rV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ 103 (372)
T 3b6u_A 24 RVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNG 103 (372)
T ss_dssp EEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCE
T ss_pred EEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCee
Confidence 45789999999998776666665543 35677765543 2457899999999999999999999999999999999999
Q ss_pred EEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCC
Q psy9445 156 TVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDI 235 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~ 235 (243)
||||||||||||||||+|....+ ..+|||||++++||+.++...++.|.|++||+|||||+|+|||++.. .
T Consensus 104 tifAYGqTGSGKTyTM~G~~~~~--------~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~-~ 174 (372)
T 3b6u_A 104 TIFAYGQTGTGKTYTMEGIRGDP--------EKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQ-T 174 (372)
T ss_dssp EEEEEESTTSSHHHHHTBCTTSG--------GGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCT-T
T ss_pred eEEeecCCCCCCCEeEecCCCCc--------ccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCC-C
Confidence 99999999999999999975422 24699999999999999988888999999999999999999998853 4
Q ss_pred ccceecCC
Q psy9445 236 TKLRLKKN 243 (243)
Q Consensus 236 ~~l~i~e~ 243 (243)
.+|+|+||
T Consensus 175 ~~l~i~e~ 182 (372)
T 3b6u_A 175 KRLELKER 182 (372)
T ss_dssp CCBCEEEE
T ss_pred CCceEEEC
Confidence 56777764
No 3
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.8e-40 Score=296.90 Aligned_cols=164 Identities=49% Similarity=0.931 Sum_probs=132.4
Q ss_pred CCCcccCCCcchhhcccceeeeecCCc-eEEEEecC--CCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCce
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSS-REITIKER--VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNC 155 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~-~ti~v~~~--~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~ 155 (243)
+..+|+||++..|...+...++.+.+. .++.+... ......+.|+||+||++.++|++||+.++.|+|+.+++|||+
T Consensus 11 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ 90 (359)
T 1x88_A 11 QVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNC 90 (359)
T ss_dssp EEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCce
Confidence 356889999999987777667666543 35555331 122346799999999999999999999999999999999999
Q ss_pred EEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCC
Q psy9445 156 TVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDI 235 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~ 235 (243)
||||||||||||||||+|.........+..++.+|||||++++||+.+.. .++.|.|+|||+|||||+|+|||+|..+.
T Consensus 91 tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 169 (359)
T 1x88_A 91 TIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLLNPSSDV 169 (359)
T ss_dssp EEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETTCTTSCT
T ss_pred EEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehhcccccc
Confidence 99999999999999999986433222333445579999999999999875 56789999999999999999999987643
Q ss_pred -ccceecCC
Q psy9445 236 -TKLRLKKN 243 (243)
Q Consensus 236 -~~l~i~e~ 243 (243)
.+++|+||
T Consensus 170 ~~~l~i~~~ 178 (359)
T 1x88_A 170 SERLQMFDD 178 (359)
T ss_dssp TCCBEEEEE
T ss_pred cccceEEec
Confidence 56777664
No 4
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=294.57 Aligned_cols=149 Identities=39% Similarity=0.689 Sum_probs=126.0
Q ss_pred CCCcccCCCcchhhcccceeeeecCC-ceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSS-SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~-~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i 157 (243)
+..+|+||++..|...+...++.+.. ..++... ...+.|.||+||++.++|++||+.++.|+|+.+++|||+||
T Consensus 7 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-----~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ti 81 (349)
T 1t5c_A 7 AVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-----DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTI 81 (349)
T ss_dssp EEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-----TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-----CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccce
Confidence 35689999999987655444332222 2233221 12579999999999999999999999999999999999999
Q ss_pred EEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCCcc
Q psy9445 158 FAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~~~ 237 (243)
||||||||||||||+|.+.. +|||||++++||+.++...+..|.|+|||+|||||+|+|||++.....+
T Consensus 82 fAYGqTGSGKTyTM~G~~~~-----------~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 150 (349)
T 1t5c_A 82 FAYGQTASGKTYTMMGSEDH-----------LGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKP 150 (349)
T ss_dssp EEEESTTSSHHHHHTBCSSS-----------BCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCC
T ss_pred eeecCCCCCCCeEEecCCCC-----------CchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCC
Confidence 99999999999999997542 4999999999999999888889999999999999999999998877788
Q ss_pred ceecCC
Q psy9445 238 LRLKKN 243 (243)
Q Consensus 238 l~i~e~ 243 (243)
|+|+||
T Consensus 151 l~i~ed 156 (349)
T 1t5c_A 151 LIIRED 156 (349)
T ss_dssp EEEEET
T ss_pred ceEEEC
Confidence 999886
No 5
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.3e-40 Score=290.26 Aligned_cols=148 Identities=36% Similarity=0.617 Sum_probs=127.7
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
+..+|+||+...|...+...++.+.+..++.+. .+.|.||+||++.++|++||+.++.|+|+.+++|||+|||
T Consensus 10 ~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~-------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tif 82 (325)
T 1bg2_A 10 KVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA-------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIF 82 (325)
T ss_dssp EEEEEECCCCHHHHHHTCCBCCEEETTTEEEET-------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCChhHhccCCeeEEEECCCCeEEEC-------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEE
Confidence 367899999999987777667766666666653 4689999999999999999999999999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh-cCCceEEEEEEEEEEECCeEEeCCCCCCCCcc
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL-LGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~-~~~~~~~v~~S~~eiyne~v~DLL~~~~~~~~ 237 (243)
|||||||||||||+|....+ ...|||||++++||+.+.. ..+..|.|++||+|||||+|+|||++.+ ..
T Consensus 83 AYGqTGSGKTyTm~G~~~~~--------~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~--~~ 152 (325)
T 1bg2_A 83 AYGQTSSGKTHTMEGKLHDP--------EGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK--TN 152 (325)
T ss_dssp EECSTTSSHHHHHTBSTTCT--------TTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTC--CS
T ss_pred EECCCCCCCceEecccCCCc--------ccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCC--CC
Confidence 99999999999999975432 2469999999999999976 4567899999999999999999998854 56
Q ss_pred ceecCC
Q psy9445 238 LRLKKN 243 (243)
Q Consensus 238 l~i~e~ 243 (243)
|+|+||
T Consensus 153 l~i~e~ 158 (325)
T 1bg2_A 153 LSVHED 158 (325)
T ss_dssp BCEEEC
T ss_pred ceEEEC
Confidence 777765
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-40 Score=295.69 Aligned_cols=152 Identities=32% Similarity=0.529 Sum_probs=110.3
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
+..+|+||+...|...+...++...++.++.+.........+.|+||+||++.++|++||+.++.|+|+.+++|||+|||
T Consensus 24 rV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tif 103 (388)
T 3bfn_A 24 RVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVL 103 (388)
T ss_dssp EEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEE
T ss_pred EEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEe
Confidence 35788999999987654444554445555655444333456899999999999999999999999999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh----cCCceEEEEEEEEEEECCeEEeCCCCCCC
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL----LGDAEFTVRVSFLEIYNEELIDLLSPTDD 234 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~----~~~~~~~v~~S~~eiyne~v~DLL~~~~~ 234 (243)
|||||||||||||+|.+.. +|||||++++||+.++. ...+.|.|.+||+|||||+|+|||+|..
T Consensus 104 AYGqTGSGKTyTM~G~~~~-----------~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~- 171 (388)
T 3bfn_A 104 AYGPTGAGKTHTMLGSPEQ-----------PGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS- 171 (388)
T ss_dssp EESCTTSSHHHHHTBCSSS-----------BCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS-
T ss_pred eecCCCCCCCeEeecCccc-----------cchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC-
Confidence 9999999999999997543 49999999999999975 2356899999999999999999999854
Q ss_pred CccceecCC
Q psy9445 235 ITKLRLKKN 243 (243)
Q Consensus 235 ~~~l~i~e~ 243 (243)
..|+|+||
T Consensus 172 -~~l~ired 179 (388)
T 3bfn_A 172 -GDLVIRED 179 (388)
T ss_dssp -CBCCCEEC
T ss_pred -CCceEEEc
Confidence 46777775
No 7
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=5.6e-40 Score=294.37 Aligned_cols=155 Identities=32% Similarity=0.601 Sum_probs=130.1
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCC--------CcchhhhccccchhHHHHh
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVDVYKYVVNPLIDEVL 150 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~--------a~q~ev~~~~~~~~v~~~~ 150 (243)
+..+|+||+...|...+..+++.+.+...+...+.......+.|+||+||++. ++|++||+.++.|+|+.++
T Consensus 7 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l 86 (366)
T 2zfi_A 7 KVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAF 86 (366)
T ss_dssp EEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHH
T ss_pred EEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHh
Confidence 46789999999998777777777776655444443333467899999999887 8999999999999999999
Q ss_pred cCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc--CCceEEEEEEEEEEECCeEEeC
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDL 228 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~--~~~~~~v~~S~~eiyne~v~DL 228 (243)
+|||+||||||||||||||||+|.... ..+|||||++++||+.++.. .+..|.|++||+|||||+|+||
T Consensus 87 ~G~N~tifAYGqTGSGKTyTm~G~~~~---------~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DL 157 (366)
T 2zfi_A 87 EGYNVCIFAYGQTGAGKSYTMMGKQEK---------DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDL 157 (366)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBCSGG---------GCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEET
T ss_pred cCCeeEEEEeCCCCCCCceEeeCCCcc---------CCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEc
Confidence 999999999999999999999997431 23599999999999999874 3568999999999999999999
Q ss_pred CCCCCCCccceecCC
Q psy9445 229 LSPTDDITKLRLKKN 243 (243)
Q Consensus 229 L~~~~~~~~l~i~e~ 243 (243)
|+|.. ...|+|+||
T Consensus 158 L~~~~-~~~l~ire~ 171 (366)
T 2zfi_A 158 LNPKN-KGNLRVREH 171 (366)
T ss_dssp TCTTT-CSCBCEEEE
T ss_pred ccccc-CCCceEEEc
Confidence 99854 356778774
No 8
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.1e-39 Score=291.16 Aligned_cols=153 Identities=37% Similarity=0.699 Sum_probs=129.8
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
+..+|+||++..|...+...+|.+.++.++.+... ...++|.||+||++.++|++||+.++.|+|+.+++|||+|||
T Consensus 9 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~---~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tif 85 (355)
T 1goj_A 9 KVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK---EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVF 85 (355)
T ss_dssp EEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST---TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC---CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEE
Confidence 45789999999998777777787777777666433 246899999999999999999999999999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc-CCceEEEEEEEEEEECCeEEeCCCCCCCCcc
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~-~~~~~~v~~S~~eiyne~v~DLL~~~~~~~~ 237 (243)
|||||||||||||+|..... ...+|||||++++||+.+... .++.|.|++||+|||||+|+|||+|.. ..
T Consensus 86 AYGqTGSGKTyTm~G~~~~~-------~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~--~~ 156 (355)
T 1goj_A 86 AYGQTGAGKSYTMMGTSIDD-------PDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN--DN 156 (355)
T ss_dssp EECSTTSSHHHHHTBSCTTS-------TTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC--CS
T ss_pred EECCCCCCcceEeecCCCCC-------cccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc--CC
Confidence 99999999999999974321 234699999999999999863 466899999999999999999999864 45
Q ss_pred ceecCC
Q psy9445 238 LRLKKN 243 (243)
Q Consensus 238 l~i~e~ 243 (243)
|+|+||
T Consensus 157 l~i~e~ 162 (355)
T 1goj_A 157 LPVHEE 162 (355)
T ss_dssp CCEEEE
T ss_pred ceeEEc
Confidence 666654
No 9
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.5e-39 Score=290.56 Aligned_cols=151 Identities=32% Similarity=0.566 Sum_probs=127.3
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCC------------------CCcceEEecceeecCCCcchhhhcc
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVN------------------DKISKTFGFDRVFSQESKQVDVYKY 140 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~------------------~~~~~~f~fD~vF~~~a~q~ev~~~ 140 (243)
+..+|+||++..|...+...+|.+.++..+.+.+... ...++.|.||+||++.++|++||+.
T Consensus 13 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~ 92 (355)
T 3lre_A 13 KVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEH 92 (355)
T ss_dssp EEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHHHHHHT
T ss_pred EEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChHHHHHH
Confidence 4578899999999988887788777766555443321 1235689999999999999999999
Q ss_pred ccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc-CCceEEEEEEEEE
Q psy9445 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL-GDAEFTVRVSFLE 219 (243)
Q Consensus 141 ~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~-~~~~~~v~~S~~e 219 (243)
++.|+|+.+++|||+||||||||||||||||+|.... +|||||++++||+.++.. ....|.|.|||+|
T Consensus 93 ~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~-----------~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~E 161 (355)
T 3lre_A 93 TTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADE-----------PGVMYLTMLHLYKCMDEIKEEKICSTAVSYLE 161 (355)
T ss_dssp THHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSS-----------BCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCC-----------CCeeehhhhHHHHhhhhhccCceEEEEEEEEE
Confidence 9999999999999999999999999999999997543 499999999999999874 4568999999999
Q ss_pred EECCeEEeCCCCCCCCccceecCC
Q psy9445 220 IYNEELIDLLSPTDDITKLRLKKN 243 (243)
Q Consensus 220 iyne~v~DLL~~~~~~~~l~i~e~ 243 (243)
||||+|+|||++. .+|+|+||
T Consensus 162 IYnE~i~DLL~~~---~~l~ire~ 182 (355)
T 3lre_A 162 VYNEQIRDLLVNS---GPLAVRED 182 (355)
T ss_dssp EETTEEEESSSCC---CCBEEEEC
T ss_pred EECCEEEECcCCC---CCceeEEc
Confidence 9999999999875 46778775
No 10
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.6e-40 Score=292.96 Aligned_cols=151 Identities=40% Similarity=0.692 Sum_probs=125.0
Q ss_pred CCCcccCCCcchhhcccceeeeecCC-ceEEEEecCCC-------CCcceEEecceeecCCCcchhhhccccchhHHHHh
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSS-SREITIKERVN-------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVL 150 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~-~~ti~v~~~~~-------~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~ 150 (243)
+..+|+||++..|...+...++.+.+ ..++.+.++.. ....++|.||+||++.++|++||+.++.|+|+.++
T Consensus 7 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 86 (350)
T 2vvg_A 7 KVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVL 86 (350)
T ss_dssp EEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHHHHHH
T ss_pred EEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHHHHHh
Confidence 45789999999998777666666544 34666655432 24578999999999999999999999999999999
Q ss_pred cCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh-cCCceEEEEEEEEEEECCeEEeCC
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL-LGDAEFTVRVSFLEIYNEELIDLL 229 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~-~~~~~~~v~~S~~eiyne~v~DLL 229 (243)
+|||+||||||||||||||||+|.... +|||||++++||+.++. ..+..|.|.+||+|||||+|+|||
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm~G~~~~-----------~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL 155 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTMGGNKEE-----------PGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLI 155 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBCSSS-----------BCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETT
T ss_pred CCCceeEEeecCCCCCCCEEeecCCcc-----------CchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcc
Confidence 999999999999999999999998542 49999999999999985 566789999999999999999999
Q ss_pred CCCCCCccceecCC
Q psy9445 230 SPTDDITKLRLKKN 243 (243)
Q Consensus 230 ~~~~~~~~l~i~e~ 243 (243)
++ ..+|+|+||
T Consensus 156 ~~---~~~l~i~e~ 166 (350)
T 2vvg_A 156 KN---NTKLPLKED 166 (350)
T ss_dssp TT---EEEECEEEE
T ss_pred cC---CcCceeeEc
Confidence 85 356777764
No 11
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.1e-39 Score=290.40 Aligned_cols=154 Identities=34% Similarity=0.540 Sum_probs=126.8
Q ss_pred CCCcccCCCcchhhcccceeeeecCCc-eEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSS-REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~-~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i 157 (243)
+..+|+||+...|...+...++.+.++ ..+.+. ..+.|.||+||+++++|++||+.++.|+|+.+++|||+||
T Consensus 14 ~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~------~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ti 87 (344)
T 4a14_A 14 RVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG------RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATV 87 (344)
T ss_dssp EEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET------TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEE
T ss_pred EEEEEecccchHHHhccCeeEEEEcCCCceEEec------ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeE
Confidence 357899999999986655555544333 234332 2579999999999999999999999999999999999999
Q ss_pred EEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCCCCCCCcc
Q psy9445 158 FAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~~~~~~~~ 237 (243)
||||||||||||||+|..... .....+|||||++++||+.++......|.|.+||+|||||+|+|||++......
T Consensus 88 fAYGqTGSGKTyTm~G~~~~~-----~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 162 (344)
T 4a14_A 88 FAYGQTGSGKTYTMGEASVAS-----LLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRD 162 (344)
T ss_dssp EEESSTTSSHHHHHCC-------------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGG
T ss_pred EEecccCCCceEeecccchhh-----hhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcccccc
Confidence 999999999999999974311 012346999999999999999888889999999999999999999998777788
Q ss_pred ceecCC
Q psy9445 238 LRLKKN 243 (243)
Q Consensus 238 l~i~e~ 243 (243)
|+|+||
T Consensus 163 l~i~e~ 168 (344)
T 4a14_A 163 IQLRED 168 (344)
T ss_dssp CEEEEC
T ss_pred ceeeec
Confidence 999886
No 12
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1e-39 Score=291.49 Aligned_cols=153 Identities=31% Similarity=0.600 Sum_probs=122.2
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCC-------CCCcceEEecceee--------cCCCcchhhhccccc
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERV-------NDKISKTFGFDRVF--------SQESKQVDVYKYVVN 143 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~-------~~~~~~~f~fD~vF--------~~~a~q~ev~~~~~~ 143 (243)
+..||+||++..|...+..+++.+++...+ +.++. ....++.|.||+|| ++.++|++||+.++.
T Consensus 4 kV~vRvRPl~~~E~~~~~~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~ 82 (354)
T 3gbj_A 4 KVAVRIRPMNRRETDLHTKCVVDVDANKVI-LNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGE 82 (354)
T ss_dssp EEEEEECCCCHHHHHHTCCBCEEEETTEEE-ECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHH
T ss_pred EEEEECCCCChhhhccCCceEEEeCCCeEE-EeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhhH
Confidence 356899999999987777777777665543 33221 12357899999999 456899999999999
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh--cCCceEEEEEEEEEEE
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL--LGDAEFTVRVSFLEIY 221 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~--~~~~~~~v~~S~~eiy 221 (243)
|+|+.+++|||+||||||||||||||||+|.... +|||||++++||+.++. ..+..|.|.|||+|||
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~-----------~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 151 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQ-----------PGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIY 151 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSS-----------BCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEE
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEEecCCCC-----------CchhhHHHHHHHHHHHhhcccccceeeeceeEEEe
Confidence 9999999999999999999999999999997543 49999999999999875 3567899999999999
Q ss_pred CCeEEeCCCCCCCCccceecCC
Q psy9445 222 NEELIDLLSPTDDITKLRLKKN 243 (243)
Q Consensus 222 ne~v~DLL~~~~~~~~l~i~e~ 243 (243)
||+|+|||+|......|+|+||
T Consensus 152 nE~i~DLL~~~~~~~~l~i~e~ 173 (354)
T 3gbj_A 152 NEKVRDLLDPKGSRQTLKVREH 173 (354)
T ss_dssp TTEEEETTC------CBCBC--
T ss_pred cCeeeEccCCCCCCcceEEEEc
Confidence 9999999999777778999886
No 13
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=5e-39 Score=287.79 Aligned_cols=148 Identities=36% Similarity=0.629 Sum_probs=126.0
Q ss_pred CCCcccCCCcchhhcccceeeeecCCc---eEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCce
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSS---REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNC 155 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~---~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~ 155 (243)
+..+|+||+...|...+...++.++++ .++.+. .+.|.||+||++.++|++||+.++.|+|+.+++|||+
T Consensus 14 ~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~-------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~ 86 (365)
T 2y65_A 14 KVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA-------GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNG 86 (365)
T ss_dssp EEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET-------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred EEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC-------CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCce
Confidence 467899999999987777667766653 344432 4689999999999999999999999999999999999
Q ss_pred EEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh-cCCceEEEEEEEEEEECCeEEeCCCCCCC
Q psy9445 156 TVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL-LGDAEFTVRVSFLEIYNEELIDLLSPTDD 234 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~-~~~~~~~v~~S~~eiyne~v~DLL~~~~~ 234 (243)
||||||||||||||||+|....+ ..+|||||++++||+.+.. ..++.|.|.+||+|||||+|+|||++.+
T Consensus 87 tifAYGqTGSGKTyTm~G~~~~~--------~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~- 157 (365)
T 2y65_A 87 TIFAYGQTSSGKTHTMEGVIGDS--------VKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK- 157 (365)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCT--------TTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC-
T ss_pred EEEeecCCCCCCceEEecCCCCc--------ccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc-
Confidence 99999999999999999975422 3469999999999999986 4567899999999999999999998854
Q ss_pred CccceecCC
Q psy9445 235 ITKLRLKKN 243 (243)
Q Consensus 235 ~~~l~i~e~ 243 (243)
..|+|+||
T Consensus 158 -~~l~i~e~ 165 (365)
T 2y65_A 158 -VNLSVHED 165 (365)
T ss_dssp -CSBCEEEC
T ss_pred -CCceEEEC
Confidence 56777765
No 14
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.9e-39 Score=295.64 Aligned_cols=154 Identities=29% Similarity=0.517 Sum_probs=126.3
Q ss_pred CCCcccCCCcchhhcccceeeeecCCce-EEEEecCCC-------------CCcceEEecceeecC-------CCcchhh
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSR-EITIKERVN-------------DKISKTFGFDRVFSQ-------ESKQVDV 137 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~-ti~v~~~~~-------------~~~~~~f~fD~vF~~-------~a~q~ev 137 (243)
+..+|+||++..|...+..+++.+++.. .+.+..+.. ....+.|+||+||++ .++|++|
T Consensus 41 rV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~asQ~~V 120 (443)
T 2owm_A 41 RVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHV 120 (443)
T ss_dssp EEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCCCHHHH
T ss_pred EEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCCCHHHH
Confidence 4678999999999877777777666543 333332211 123689999999976 4899999
Q ss_pred hccccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc----CCceEEE
Q psy9445 138 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL----GDAEFTV 213 (243)
Q Consensus 138 ~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~----~~~~~~v 213 (243)
|+.++.|+|+.+++|||+||||||||||||||||+|.+.. +|||||++++||+.++.. .++.|.|
T Consensus 121 y~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~-----------~GIipr~~~~lF~~i~~~~~~~~~~~~~V 189 (443)
T 2owm_A 121 YDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQ-----------PGLIPRTCEDLFQRIASAQDETPNISYNV 189 (443)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTS-----------CCHHHHHHHHHHHHHHHTTTTSTTCEEEE
T ss_pred HHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCC-----------CchHHHHHHHHHHHHHhhhcccCCceEEE
Confidence 9999999999999999999999999999999999997543 499999999999999864 4678999
Q ss_pred EEEEEEEECCeEEeCCCCCC---CCccceecCC
Q psy9445 214 RVSFLEIYNEELIDLLSPTD---DITKLRLKKN 243 (243)
Q Consensus 214 ~~S~~eiyne~v~DLL~~~~---~~~~l~i~e~ 243 (243)
+|||+|||||+|+|||+|.. ....|+|+||
T Consensus 190 ~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~ 222 (443)
T 2owm_A 190 KVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRES 222 (443)
T ss_dssp EEEEEEEETTEEEETTSCCCSSCCCCCCEEEEE
T ss_pred EEEEEEEECCEeeEccCccccCCcccccceeEC
Confidence 99999999999999999843 3356888875
No 15
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=2.9e-39 Score=290.49 Aligned_cols=156 Identities=33% Similarity=0.502 Sum_probs=125.7
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCCC------CcceEEecceeecCCCcchhhhccccchhHHHHhcCC
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVND------KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY 153 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~------~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~ 153 (243)
..+|+||++..|...+...+|.+++..++.+..+... ...+.|+||+||++.++|++||+.++.|+|+.+++||
T Consensus 55 V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~ 134 (387)
T 2heh_A 55 VCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 134 (387)
T ss_dssp EEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTC
T ss_pred EEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCC
Confidence 5788999999998877777888877777766543321 1357899999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc--CCceEEEEEEEEEEECCeEEeCCCC
Q psy9445 154 NCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSP 231 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~--~~~~~~v~~S~~eiyne~v~DLL~~ 231 (243)
|+||||||||||||||||+|..... .....+|||||++++||..++.. .+..|.|+|||+|||||+|+|||++
T Consensus 135 N~tifAYGQTGSGKTyTM~G~~~~~-----~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~ 209 (387)
T 2heh_A 135 KATCFAYGQTGSGKTHTMGGDLSGK-----AQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK 209 (387)
T ss_dssp EEEEEEESCTTSSHHHHHC----------------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTT
T ss_pred ceEEEEecCCCCCCCeEeccCCCCC-----CcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCC
Confidence 9999999999999999999964211 11234699999999999998752 4567999999999999999999987
Q ss_pred CCCCccceecCC
Q psy9445 232 TDDITKLRLKKN 243 (243)
Q Consensus 232 ~~~~~~l~i~e~ 243 (243)
. .+|+|+||
T Consensus 210 ~---~~l~i~ed 218 (387)
T 2heh_A 210 K---AKLRVLED 218 (387)
T ss_dssp T---EECEEEEC
T ss_pred C---ccceEEEc
Confidence 4 46778775
No 16
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.2e-38 Score=285.53 Aligned_cols=151 Identities=35% Similarity=0.572 Sum_probs=125.5
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEE
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 158 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ 158 (243)
+..+|+||+...|...+.+.++...+..++... ......+.|.||+||++.++|.+||+. +.|+|+.+++|||+|||
T Consensus 8 ~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~--~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tif 84 (369)
T 3cob_A 8 RVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHL--WKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIF 84 (369)
T ss_dssp EEEEEECCCCHHHHHTTCCBCEEECSSSEEEEE--CTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCChhhccCCCcEEEEcCCcEEEEec--CCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEE
Confidence 357889999999987666555544444344432 223346899999999999999999999 69999999999999999
Q ss_pred EeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeEEeCCCCCCC-Cc
Q psy9445 159 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDD-IT 236 (243)
Q Consensus 159 ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~-~~~~~v~~S~~eiyne~v~DLL~~~~~-~~ 236 (243)
|||||||||||||+|++.. +|||||++++||+.++... .+.|.|++||+|||||+|+|||+|... ..
T Consensus 85 AYGqTGSGKTyTM~G~~~~-----------~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 153 (369)
T 3cob_A 85 AYGQTGSGKTFTIYGADSN-----------PGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRL 153 (369)
T ss_dssp EEECTTSSHHHHHTBCSSS-----------BCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCC
T ss_pred EECCCCCCCeEeecCCCCC-----------CchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCc
Confidence 9999999999999998543 4999999999999998754 368999999999999999999998653 46
Q ss_pred cceecCC
Q psy9445 237 KLRLKKN 243 (243)
Q Consensus 237 ~l~i~e~ 243 (243)
+|+|+||
T Consensus 154 ~l~i~e~ 160 (369)
T 3cob_A 154 KLDIKKD 160 (369)
T ss_dssp CCEEEEC
T ss_pred ceEEEEC
Confidence 7888875
No 17
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.3e-39 Score=290.53 Aligned_cols=156 Identities=32% Similarity=0.508 Sum_probs=129.3
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCCC------CcceEEecceeecCCCcchhhhccccchhHHHHhcCC
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVND------KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY 153 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~------~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~ 153 (243)
..+|+||++..|...+...+|.+.+..++.+..+... ...+.|+||+||++.++|++||+.++.|+|+++++||
T Consensus 75 V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~ 154 (410)
T 1v8k_A 75 VCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 154 (410)
T ss_dssp EEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTC
T ss_pred EEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCC
Confidence 5688999999998877777888877777766544321 1357899999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc--CCceEEEEEEEEEEECCeEEeCCCC
Q psy9445 154 NCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSP 231 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~--~~~~~~v~~S~~eiyne~v~DLL~~ 231 (243)
|+||||||||||||||||+|+.... .....+|||||++++||..++.. .++.|.|.|||+|||||+|+|||++
T Consensus 155 N~tifAYGQTGSGKTyTM~G~~~~~-----~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 229 (410)
T 1v8k_A 155 KATCFAYGQTGSGKTHTMGGDLSGK-----SQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229 (410)
T ss_dssp EEEEEEEESTTSSHHHHHHCBC---------CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTT
T ss_pred ceeEEeecCCCCCCCeEeecCCCCC-----CccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCC
Confidence 9999999999999999999964211 11234699999999999988752 4678999999999999999999987
Q ss_pred CCCCccceecCC
Q psy9445 232 TDDITKLRLKKN 243 (243)
Q Consensus 232 ~~~~~~l~i~e~ 243 (243)
. .+|+|+||
T Consensus 230 ~---~~l~i~ed 238 (410)
T 1v8k_A 230 K---AKLRVLED 238 (410)
T ss_dssp T---EEEEEEEC
T ss_pred C---CCceEEEC
Confidence 4 46788775
No 18
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=3.8e-38 Score=278.90 Aligned_cols=150 Identities=36% Similarity=0.573 Sum_probs=119.5
Q ss_pred CCCcccCCCcchhhcccc-eeeeec--CCceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCce
Q psy9445 79 TPHIPYRPLNSVERAAKS-CSIVDC--SSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNC 155 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s-~~iv~~--~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~ 155 (243)
+..+|+||+...|..... ..++.+ .+...+.+... ..+++|.||+||++.++|++||+. +.|+|+.+++|||+
T Consensus 7 ~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~ 82 (330)
T 2h58_A 7 RVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK---GKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNV 82 (330)
T ss_dssp EEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET---TEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCE
T ss_pred EEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC---CCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEE
Confidence 356899999998864432 223333 33344444332 246799999999999999999998 58999999999999
Q ss_pred EEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc-CCceEEEEEEEEEEECCeEEeCCCCCC-
Q psy9445 156 TVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTD- 233 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~-~~~~~~v~~S~~eiyne~v~DLL~~~~- 233 (243)
||||||||||||||||+|.... +|||||++++||+.++.. .++.|.|++||+|||||+|+|||++..
T Consensus 83 tifAYGqTGSGKTyTm~G~~~~-----------~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 151 (330)
T 2h58_A 83 CIFAYGQTGAGKTYTMEGTAEN-----------PGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ 151 (330)
T ss_dssp EEEEESSTTSSHHHHHTBCSSS-----------BCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC
T ss_pred EEEeECCCCCCCcEEEecCCCC-----------CcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc
Confidence 9999999999999999997543 499999999999999863 467899999999999999999998754
Q ss_pred CCccceecCC
Q psy9445 234 DITKLRLKKN 243 (243)
Q Consensus 234 ~~~~l~i~e~ 243 (243)
....++++||
T Consensus 152 ~~l~i~~~~~ 161 (330)
T 2h58_A 152 EKLEIRLCPD 161 (330)
T ss_dssp CCCCCEECTT
T ss_pred ccceEEEeec
Confidence 2344555443
No 19
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=4.9e-38 Score=285.21 Aligned_cols=162 Identities=34% Similarity=0.566 Sum_probs=127.8
Q ss_pred ccchhcccccCC----CcccCCCcchhhcccceeeeecCCceEEEEecCCCC----CcceEEecceeecCCCcchhhhcc
Q psy9445 69 GRCITALVEKTP----HIPYRPLNSVERAAKSCSIVDCSSSREITIKERVND----KISKTFGFDRVFSQESKQVDVYKY 140 (243)
Q Consensus 69 ~~~i~~l~~~~~----~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~----~~~~~f~fD~vF~~~a~q~ev~~~ 140 (243)
.++.|.+.+.+. .+|+||+...|..... +++...++.++.+...... ...+.|+||+||++.++|.+||+.
T Consensus 48 r~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~ 126 (412)
T 3u06_A 48 KELHNTVMDLRDNIRVFCRIRPPLESEENRMC-CTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM 126 (412)
T ss_dssp HHHHHHHHHHTCSEEEEEEECCCCGGGTTSCB-CEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT
T ss_pred HHHHHHHHHhCCCEEEEEEcCCCCchhccCcc-eEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH
Confidence 456666666544 5679999988865544 3444445556655433221 125789999999999999999985
Q ss_pred ccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh--cCCceEEEEEEEE
Q psy9445 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL--LGDAEFTVRVSFL 218 (243)
Q Consensus 141 ~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~--~~~~~~~v~~S~~ 218 (243)
+.|+|+++++|||+||||||||||||||||+|.+.. +|||||++++||+.++. ..++.|.|.+||+
T Consensus 127 -v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~-----------~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~ 194 (412)
T 3u06_A 127 -VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES-----------VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFL 194 (412)
T ss_dssp -THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTE-----------ECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEE
T ss_pred -HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCC-----------CccHHHHHHHHHHhhhhhcccCceEEEEEEEE
Confidence 679999999999999999999999999999997543 49999999999999986 3467899999999
Q ss_pred EEECCeEEeCCCCCCCCccceecCC
Q psy9445 219 EIYNEELIDLLSPTDDITKLRLKKN 243 (243)
Q Consensus 219 eiyne~v~DLL~~~~~~~~l~i~e~ 243 (243)
|||||+|+|||++......+++.+|
T Consensus 195 EIYnE~i~DLL~~~~~~~~i~~~~~ 219 (412)
T 3u06_A 195 EIYNEVLYDLLSNEQKDMEIRMAKN 219 (412)
T ss_dssp EEETTEEEETTCCSCCCCCEEECSS
T ss_pred EEeCCeeEEcCCCCCCCceeeeeec
Confidence 9999999999998766666666553
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=3.7e-38 Score=281.06 Aligned_cols=141 Identities=28% Similarity=0.515 Sum_probs=115.2
Q ss_pred CCCcccCCCcchhhcccceeeeecCC----ceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCc
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSS----SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYN 154 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~----~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n 154 (243)
+..+|+||+...|...+...++...+ ..++.+.........+.|.||+||++.++|++||+. +.|+|+++++|||
T Consensus 8 rV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l~G~n 86 (349)
T 3t0q_A 8 RVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYN 86 (349)
T ss_dssp EEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHH-HHHHHHGGGTTCE
T ss_pred EEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHH-HHHHHHHHHCCcc
Confidence 45678999999987665555554322 235666554444567899999999999999999998 5799999999999
Q ss_pred eEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh--cCCceEEEEEEEEEEECCeEEeCCCCC
Q psy9445 155 CTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL--LGDAEFTVRVSFLEIYNEELIDLLSPT 232 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~--~~~~~~~v~~S~~eiyne~v~DLL~~~ 232 (243)
+||||||||||||||||+|+. .|||||++++||+.++. ..++.|.|.+||+|||||+|+|||.+.
T Consensus 87 ~tifAYGqTGSGKTyTm~g~~-------------~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 153 (349)
T 3t0q_A 87 VCIFAYGQTGSGKTYTMLNAG-------------DGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDF 153 (349)
T ss_dssp EEEEEECSTTSSHHHHHHSTT-------------TSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--
T ss_pred eeEEEeCCCCCCCceEeCCCC-------------CchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccc
Confidence 999999999999999999962 29999999999999886 346789999999999999999999876
Q ss_pred C
Q psy9445 233 D 233 (243)
Q Consensus 233 ~ 233 (243)
.
T Consensus 154 ~ 154 (349)
T 3t0q_A 154 K 154 (349)
T ss_dssp -
T ss_pred c
Confidence 4
No 21
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=280.81 Aligned_cols=142 Identities=36% Similarity=0.579 Sum_probs=116.5
Q ss_pred CCCcccCCCcchhhcccceeeeecCCceEEEEecCCC--------CCcceEEecceeecCCCcchhhhccccchhHHHHh
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVN--------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVL 150 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~--------~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~ 150 (243)
+..+|+||+...|.. .+....+..++.+..+.. ....++|.||+||+ +++|++||+.++.|+|++++
T Consensus 27 ~V~vRvRP~~~~e~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l 101 (359)
T 3nwn_A 27 HAFVRVKPTDDFAHE----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQAL 101 (359)
T ss_dssp EEEEEECCCSSCCTT----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHH
T ss_pred EEEEEcCCCCccccc----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHHHh
Confidence 467899998766532 122234445666554432 23567899999997 58999999999999999999
Q ss_pred cCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCCC
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLS 230 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL~ 230 (243)
+|||+||||||||||||||||+|..... ..+|||||++++||+.++...++.|.|+|||+|||||+|+|||+
T Consensus 102 ~G~N~tifAYGQTGSGKTyTM~G~~~~~--------~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 173 (359)
T 3nwn_A 102 DGYNGTIMCYGQTGAGKTYTMMGATENY--------KHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 173 (359)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCSSCG--------GGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred CCCCEEEEEeCCCCCCccEEeCCccCCc--------cchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccc
Confidence 9999999999999999999999975422 34699999999999999988888999999999999999999998
Q ss_pred CCC
Q psy9445 231 PTD 233 (243)
Q Consensus 231 ~~~ 233 (243)
+..
T Consensus 174 ~~~ 176 (359)
T 3nwn_A 174 TLP 176 (359)
T ss_dssp SST
T ss_pred ccc
Confidence 754
No 22
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=3.1e-38 Score=282.17 Aligned_cols=148 Identities=32% Similarity=0.518 Sum_probs=123.6
Q ss_pred CCcccCCCcchhhcccceeeeecCCceEEEEecCCCC------CcceEEecceeecCCCcchhhhccccchhHHHHhc-C
Q psy9445 80 PHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVND------KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLS-G 152 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~------~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~-G 152 (243)
..+|+||++..|...+...+|.+.++.++.+.++... ...++|.||+||++.++|++||+.++.|+|+++++ |
T Consensus 4 V~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G 83 (360)
T 1ry6_A 4 VVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENG 83 (360)
T ss_dssp EEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHC
T ss_pred EEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCC
Confidence 4689999999998777777777777777776554221 13578999999999999999999999999999996 9
Q ss_pred CceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh-cCCceEEEEEEEEEEECCeEEeCCCC
Q psy9445 153 YNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL-LGDAEFTVRVSFLEIYNEELIDLLSP 231 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~-~~~~~~~v~~S~~eiyne~v~DLL~~ 231 (243)
|||||||||||||||||||+|..... ....+|||||++++||+.++. ..+..|.|++||+|||||+|+|||++
T Consensus 84 ~n~tifAYGqTGSGKTyTM~G~~~~~------~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 157 (360)
T 1ry6_A 84 CVCSCFAYGQTGSGKTYTMLGSQPYG------QSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK 157 (360)
T ss_dssp CEEEEEEECCTTSSHHHHHHBSSSTT------TSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC
T ss_pred ceeEEEeeCCCCCCCCEEEecCCCCC------CccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccC
Confidence 99999999999999999999975311 123469999999999999986 35678999999999999999999987
Q ss_pred CC
Q psy9445 232 TD 233 (243)
Q Consensus 232 ~~ 233 (243)
.+
T Consensus 158 ~~ 159 (360)
T 1ry6_A 158 RK 159 (360)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 23
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=4.9e-38 Score=279.96 Aligned_cols=142 Identities=35% Similarity=0.625 Sum_probs=111.8
Q ss_pred CCCcccCCCcc-hhhcccceeeeecC----CceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCC
Q psy9445 79 TPHIPYRPLNS-VERAAKSCSIVDCS----SSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY 153 (243)
Q Consensus 79 ~~~~~~~~~~~-~E~~~~s~~iv~~~----~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~ 153 (243)
+..+|+||+.. .|........+... +..++.+..+......+.|.||+||++.++|++||+. +.|+|+.+++||
T Consensus 6 rV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~ 84 (347)
T 1f9v_A 6 RVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGY 84 (347)
T ss_dssp EEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHH-HHHHHGGGGGTC
T ss_pred EEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHH-HHHHHHHhcCCc
Confidence 35689999987 44333333333221 2235666554344457899999999999999999998 579999999999
Q ss_pred ceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc--CCceEEEEEEEEEEECCeEEeCCCC
Q psy9445 154 NCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSP 231 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~--~~~~~~v~~S~~eiyne~v~DLL~~ 231 (243)
|+||||||||||||||||+|.. .|||||++++||+.++.. .++.|.|.+||+|||||+|+|||++
T Consensus 85 n~tifAYGqTGSGKTyTM~G~~-------------~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 151 (347)
T 1f9v_A 85 NVCIFAYGQTGSGKTFTMLNPG-------------DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS 151 (347)
T ss_dssp CEEEEEECCTTSSHHHHHHSTT-------------TSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-
T ss_pred eeEEEEECCCCCCCcEeccCCC-------------CCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCC
Confidence 9999999999999999999962 399999999999999863 4578999999999999999999998
Q ss_pred CCC
Q psy9445 232 TDD 234 (243)
Q Consensus 232 ~~~ 234 (243)
...
T Consensus 152 ~~~ 154 (347)
T 1f9v_A 152 DNN 154 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 754
No 24
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=281.48 Aligned_cols=157 Identities=32% Similarity=0.544 Sum_probs=117.3
Q ss_pred CCCcccCCCcchhhcccceee-eec------CCceEEEEecCC----------CCCcceEEecceeecCCCcchhhhccc
Q psy9445 79 TPHIPYRPLNSVERAAKSCSI-VDC------SSSREITIKERV----------NDKISKTFGFDRVFSQESKQVDVYKYV 141 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~i-v~~------~~~~ti~v~~~~----------~~~~~~~f~fD~vF~~~a~q~ev~~~~ 141 (243)
+..+|+||++..|...+...+ +.. .++.++.+..+. .....+.|+||+||++.++|++||+.
T Consensus 25 rV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~- 103 (376)
T 2rep_A 25 RVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDEVFEE- 103 (376)
T ss_dssp EEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHHHHHH-
T ss_pred EEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchhhhhh-
Confidence 356789999999976543222 211 233455543311 11235689999999999999999998
Q ss_pred cchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc--CCceEEEEEEEEE
Q psy9445 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVRVSFLE 219 (243)
Q Consensus 142 ~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~--~~~~~~v~~S~~e 219 (243)
+.|+|+.+++|||+||||||||||||||||+|..... ...+|||||++++||+.++.. .++.|.|.+||+|
T Consensus 104 v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~-------~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 176 (376)
T 2rep_A 104 IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD-------PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVE 176 (376)
T ss_dssp HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCC-------GGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCC-------cccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEE
Confidence 5689999999999999999999999999999975421 234699999999999999863 4678999999999
Q ss_pred EECCeEEeCCCCCC---CCccceecCC
Q psy9445 220 IYNEELIDLLSPTD---DITKLRLKKN 243 (243)
Q Consensus 220 iyne~v~DLL~~~~---~~~~l~i~e~ 243 (243)
||||+|+|||++.. ...+++|+|+
T Consensus 177 IYnE~i~DLL~~~~~~~~~~~l~ir~~ 203 (376)
T 2rep_A 177 IYNETVRDLLATGTRKGQGGECEIRRA 203 (376)
T ss_dssp EETTEEEETTCCC--------CCEEEC
T ss_pred EECCEeeEccccccccccCCCceEEec
Confidence 99999999999853 2345666653
No 25
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2.5e-37 Score=274.76 Aligned_cols=144 Identities=31% Similarity=0.573 Sum_probs=112.6
Q ss_pred CCCcccCCCcchhhcccceeeeecCC---ceEEEEecCCCCCcceEEecceeecCCCcchhhhccccchhHHHHhcCCce
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDCSS---SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNC 155 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~~~---~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~ 155 (243)
+..+|+||+...|. .+...++.+++ +..+.+. .+.|.||+||++.++|++||+.++.|+|+.+++|||+
T Consensus 25 rV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~~-------~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~ 96 (344)
T 3dc4_A 25 RIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIVD-------QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQC 96 (344)
T ss_dssp EEEEEECCCC--------CCSEECCSSSCSSEEEET-------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCE
T ss_pred EEEEECCCCCcccc-cCCceEEEecCCCCCceEEec-------CcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCce
Confidence 35678999988773 33445555543 3444442 4699999999999999999999999999999999999
Q ss_pred EEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcC---CceEEEEEEEEEEECCeEEeCCCCC
Q psy9445 156 TVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG---DAEFTVRVSFLEIYNEELIDLLSPT 232 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~---~~~~~v~~S~~eiyne~v~DLL~~~ 232 (243)
||||||||||||||||.|..... .....+|||||++++||+.++... ...|.|++||+|||||+|+|||++.
T Consensus 97 tifAYGQTGSGKTyTM~g~~~~~-----~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 171 (344)
T 3dc4_A 97 TALAYGQTGTGKSYSMGMTPPGE-----ILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGST 171 (344)
T ss_dssp EEEEESSTTSSHHHHHTCSCGGG-----SCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSC
T ss_pred EEEEecCCCCCCCeEEcCCCCCC-----CCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCC
Confidence 99999999999999998864311 112346999999999999998643 3469999999999999999999986
Q ss_pred CCC
Q psy9445 233 DDI 235 (243)
Q Consensus 233 ~~~ 235 (243)
...
T Consensus 172 ~~~ 174 (344)
T 3dc4_A 172 PHM 174 (344)
T ss_dssp TTS
T ss_pred CCC
Confidence 543
No 26
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=7.2e-37 Score=273.15 Aligned_cols=151 Identities=34% Similarity=0.596 Sum_probs=120.8
Q ss_pred CCCcccCCCcchhhcccceeeeec-CCceEEEEecCCC--------CCcceEEecceeecCCCcchhhhccccchhHHHH
Q psy9445 79 TPHIPYRPLNSVERAAKSCSIVDC-SSSREITIKERVN--------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEV 149 (243)
Q Consensus 79 ~~~~~~~~~~~~E~~~~s~~iv~~-~~~~ti~v~~~~~--------~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~ 149 (243)
+..+|+||+...+. .++.+ +++.++.+..+.. ....+.|.||+||+ +++|++||+.++.|+|+.+
T Consensus 26 rV~vRvRP~~~~~~-----~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~~ 99 (358)
T 2nr8_A 26 HAFVRVKPTDDFAH-----EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQA 99 (358)
T ss_dssp EEEEEECCCSSCCT-----TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHH
T ss_pred EEEEEcCCCCCCcc-----ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHHHHHH
Confidence 35678999765331 22323 3445666544332 13467899999995 7899999999999999999
Q ss_pred hcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhcCCceEEEEEEEEEEECCeEEeCC
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLL 229 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~~~~~~~v~~S~~eiyne~v~DLL 229 (243)
++|||+||||||||||||||||+|..... ..+|||||++++||+.++...+..|.|.+||+|||||+|+|||
T Consensus 100 l~G~N~tIfAYGqTGSGKTyTM~G~~~~~--------~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 171 (358)
T 2nr8_A 100 LDGYNGTIMCYGQTGAGKTYTMMGATENY--------KHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLL 171 (358)
T ss_dssp HTTCCEEEEEEESTTSSHHHHHTBCSSCG--------GGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEECCCCCCCceEeccccccc--------ccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECc
Confidence 99999999999999999999999975421 2369999999999999998888899999999999999999999
Q ss_pred CCCC----CCccceecCC
Q psy9445 230 SPTD----DITKLRLKKN 243 (243)
Q Consensus 230 ~~~~----~~~~l~i~e~ 243 (243)
++.. ...+++|+||
T Consensus 172 ~~~~~~~~~~~~l~i~e~ 189 (358)
T 2nr8_A 172 STLPYVGPSVTPMTIVEN 189 (358)
T ss_dssp SSSTTSCTTTSCCEEEEE
T ss_pred CCccccCccCCceEEEEC
Confidence 9753 3456777764
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-37 Score=277.25 Aligned_cols=150 Identities=34% Similarity=0.579 Sum_probs=116.9
Q ss_pred cchhcccccC----CCcccCCCcch-hhcccceeeeecCC----ceEEEEecCCCCCcceEEecceeecCCCcchhhhcc
Q psy9445 70 RCITALVEKT----PHIPYRPLNSV-ERAAKSCSIVDCSS----SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKY 140 (243)
Q Consensus 70 ~~i~~l~~~~----~~~~~~~~~~~-E~~~~s~~iv~~~~----~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~ev~~~ 140 (243)
++.|.+.+.+ ..+|+||+... |....+...+...+ ...+.+.........+.|.||+||++.++|.+||+.
T Consensus 49 ~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~ 128 (403)
T 4etp_A 49 TLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE 128 (403)
T ss_dssp HHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHH
Confidence 4556665543 45679998776 43333333332221 124455444444557899999999999999999998
Q ss_pred ccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh--cCCceEEEEEEEE
Q psy9445 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL--LGDAEFTVRVSFL 218 (243)
Q Consensus 141 ~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~--~~~~~~~v~~S~~ 218 (243)
+.|+|+++++|||+||||||||||||||||+|+. .|||||++++||..++. ..++.|.|.|||+
T Consensus 129 -v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~-------------~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~ 194 (403)
T 4etp_A 129 -VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPG-------------DGIIPSTISHIFNWINKLKTKGWDYKVNAEFI 194 (403)
T ss_dssp -HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTT-------------TSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred -HHHHHHHHhCCcceEEEEECCCCCCCceEeCCCC-------------CccchhHHHHHHHHHHhhhccCceEEEEEEEE
Confidence 5699999999999999999999999999999862 39999999999999986 4567899999999
Q ss_pred EEECCeEEeCCCCCC
Q psy9445 219 EIYNEELIDLLSPTD 233 (243)
Q Consensus 219 eiyne~v~DLL~~~~ 233 (243)
|||||+|+|||++..
T Consensus 195 EIYnE~i~DLL~~~~ 209 (403)
T 4etp_A 195 EIYNENIVDLLRSDN 209 (403)
T ss_dssp EEETTEEEETTCC--
T ss_pred EEecceeeEccCCcc
Confidence 999999999998864
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.98 E-value=7.5e-33 Score=268.01 Aligned_cols=123 Identities=39% Similarity=0.674 Sum_probs=104.0
Q ss_pred eEEEEecCCC-CCcceEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeecCCCCCCCCCCC
Q psy9445 106 REITIKERVN-DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQ 184 (243)
Q Consensus 106 ~ti~v~~~~~-~~~~~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~ 184 (243)
.+|++..+.. ....++|+||+||++.++|++||+. +.|+|+.+++|||+||||||||||||||||.|..
T Consensus 415 ~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~--------- 484 (715)
T 4h1g_A 415 QELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPT--------- 484 (715)
T ss_dssp CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTT---------
T ss_pred CeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCCC---------
Confidence 3566555444 3678899999999999999999987 5799999999999999999999999999999852
Q ss_pred CCCCCCchhHHHHHHHHHHHh--cCCceEEEEEEEEEEECCeEEeCCCCCCC-CccceecC
Q psy9445 185 DDPLSGIVPRAMNHLFDELRL--LGDAEFTVRVSFLEIYNEELIDLLSPTDD-ITKLRLKK 242 (243)
Q Consensus 185 ~~~~~Gii~r~~~~lf~~~~~--~~~~~~~v~~S~~eiyne~v~DLL~~~~~-~~~l~i~e 242 (243)
+|||||++++||+.++. ..+..|.|+|||+|||||+|+|||+|..+ ..++++++
T Consensus 485 ----~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~ 541 (715)
T 4h1g_A 485 ----NGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKH 541 (715)
T ss_dssp ----TSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEE
T ss_pred ----CCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEE
Confidence 39999999999999986 34568999999999999999999998643 34455543
No 29
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=99.91 E-value=1.6e-25 Score=200.07 Aligned_cols=96 Identities=72% Similarity=1.051 Sum_probs=72.5
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||.+|||||+||+|+|+.+.....+......|+|+|||||||||..++++.+++++|+.+||+||++|++||++|.++..
T Consensus 219 ~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 298 (359)
T 1x88_A 219 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 298 (359)
T ss_dssp STTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCC
Confidence 89999999999999998776544455556789999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||+++++.+++.+
T Consensus 299 hvPyRdSkLT~lLqds 314 (359)
T 1x88_A 299 HVPYRESKLTRILQDS 314 (359)
T ss_dssp CCCGGGSHHHHHTGGG
T ss_pred CCccccchHHHHHHHH
Confidence 9999999999887654
No 30
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=99.90 E-value=1e-24 Score=194.68 Aligned_cols=96 Identities=44% Similarity=0.621 Sum_probs=62.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc--
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-- 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-- 78 (243)
||++|||||+||+|+|.+.............|+|+|||||||||..++++.|.+++|+.+||+||++|++||++|.+.
T Consensus 221 ~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 300 (355)
T 3lre_A 221 MNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKR 300 (355)
T ss_dssp --CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC----
T ss_pred CcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 799999999999999988765443333446799999999999999999999999999999999999999999999875
Q ss_pred -CCCcccCCCcchhhcccc
Q psy9445 79 -TPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 79 -~~~~~~~~~~~~E~~~~s 96 (243)
..|||||+++++.+++.+
T Consensus 301 ~~~hiPyRdSkLT~lL~ds 319 (355)
T 3lre_A 301 KNQHIPYRNSKLTRLLKDS 319 (355)
T ss_dssp ----CCGGGSHHHHHTTTT
T ss_pred CCCcCCcccCHHHHHHHHh
Confidence 359999999999887654
No 31
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=99.90 E-value=1.1e-24 Score=194.02 Aligned_cols=95 Identities=45% Similarity=0.643 Sum_probs=65.3
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||.+|||||+||+|+|+..... .+......|+|+|||||||||..++++.|++++|+.+||+||++|++||++|.+++.
T Consensus 205 ~N~~SSRSH~if~i~v~~~~~~-~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~ 283 (350)
T 2vvg_A 205 MNDTSSRSHSIFMVRIECSEVI-ENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT 283 (350)
T ss_dssp ----CTTCEEEEEEEEEEEEC-----CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCcceEEEEEEEEEeecc-CCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999876533 233345679999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||+++++.+++.+
T Consensus 284 hvPyRdSkLT~lLqds 299 (350)
T 2vvg_A 284 HIPYRDSKLTRLLQDS 299 (350)
T ss_dssp SCCGGGCHHHHHTTTT
T ss_pred CCCccccHHHHHHHHh
Confidence 9999999999887654
No 32
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=99.90 E-value=2.8e-24 Score=190.03 Aligned_cols=93 Identities=48% Similarity=0.670 Sum_probs=77.7
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||++|||||+||+|+|....... .....|+|+|||||||||..++++.+.+++|+.+||+||++|++||++|.++..
T Consensus 200 ~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~ 276 (330)
T 2h58_A 200 LNEHSSRSHALLIVTVRGVDCST---GLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG 276 (330)
T ss_dssp SCSCGGGSEEEEEEEEEEEETTT---TEEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCcCCccEEEEEEEEEEecCC---CcEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCC
Confidence 79999999999999998765432 234579999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||+++++.+++.+
T Consensus 277 hvPyRdSkLT~lL~ds 292 (330)
T 2h58_A 277 HVPFRNSKLTYLLQDS 292 (330)
T ss_dssp CCCGGGSHHHHHTHHH
T ss_pred CCcccccHHHHHHHHH
Confidence 9999999998876543
No 33
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=99.90 E-value=2.7e-24 Score=191.42 Aligned_cols=93 Identities=44% Similarity=0.528 Sum_probs=79.7
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
||++|||||+||+|+|....... + ....|+|+|||||||||..++++.|++++|+.+||+||++|++||++|.+..
T Consensus 210 ~N~~SSRSH~if~i~v~~~~~~~-~--~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~ 286 (347)
T 1f9v_A 210 SNEHSSASHSIFIIHLSGSNAKT-G--AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS 286 (347)
T ss_dssp --CCGGGSEEEEEEEEEEECC---C--CEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC-
T ss_pred CCCCCCCceEEEEEEEEEecCCC-C--ceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccC
Confidence 79999999999999998764321 1 2357999999999999999999999999999999999999999999998765
Q ss_pred --CCcccCCCcchhhcccc
Q psy9445 80 --PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 --~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 287 ~~~hiPyRdSkLT~lLqds 305 (347)
T 1f9v_A 287 TKRHIPFRNSKLTYLLQYS 305 (347)
T ss_dssp --CCCCGGGSHHHHHHHHH
T ss_pred CCCcCccccCHHHHHHHHH
Confidence 89999999999876644
No 34
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=99.90 E-value=3.4e-24 Score=190.95 Aligned_cols=94 Identities=41% Similarity=0.492 Sum_probs=76.8
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
||++|||||+||+|+|........ ....|+|+|||||||||..++++.|++++|+.+||+||++|++||++|.+..
T Consensus 213 ~N~~SSRSH~if~i~v~~~~~~~~---~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 289 (349)
T 3t0q_A 213 SNERSSRSHSVFMVHINGRNLHTG---ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA 289 (349)
T ss_dssp --CTGGGSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTG
T ss_pred cccccCCcceEEEEEEEEEecCCC---CeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccC
Confidence 799999999999999987754322 2357999999999999999999999999999999999999999999998754
Q ss_pred --CCcccCCCcchhhcccce
Q psy9445 80 --PHIPYRPLNSVERAAKSC 97 (243)
Q Consensus 80 --~~~~~~~~~~~E~~~~s~ 97 (243)
.|||||+++++.+++.+.
T Consensus 290 ~~~hiPyRdSkLT~lLqdsL 309 (349)
T 3t0q_A 290 GKRYIPFRNSKLTYLLQYSL 309 (349)
T ss_dssp GGSCCCGGGSHHHHHHGGGS
T ss_pred CCCcCCCcCCHHHHHHHHhc
Confidence 599999999998876543
No 35
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=193.15 Aligned_cols=94 Identities=37% Similarity=0.582 Sum_probs=67.5
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||.+|||||+||+|+|.+....... ....|+|+|||||||||..++++.|.+++|+.+||+||++|++||++|.++..
T Consensus 218 ~N~~SSRSH~If~i~v~~~~~~~~~--~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~ 295 (388)
T 3bfn_A 218 LNQRSSRSHAVLLVKVDQRERLAPF--RQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP 295 (388)
T ss_dssp ---CGGGSEEEEEEEEEEEESSTTC--CEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCeEEEEEEEEEeccCCCC--ceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCC
Confidence 7999999999999999876543221 23579999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||+++++.+++.+
T Consensus 296 hVPYRdSkLTrlLqds 311 (388)
T 3bfn_A 296 RVPYRDSKLTRLLQDS 311 (388)
T ss_dssp CCCGGGSHHHHHTTTS
T ss_pred CCcCcccHHHHHHHHh
Confidence 9999999999887654
No 36
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=99.90 E-value=5.6e-25 Score=197.44 Aligned_cols=96 Identities=58% Similarity=0.940 Sum_probs=67.2
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCch-hHHHHhhcchhHHhhhcccchhcccccC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQ-DKRAREAGNINQSLLTLGRCITALVEKT 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~-~~~~~E~~~iN~SL~~l~~~i~~l~~~~ 79 (243)
||++|||||+||+|+|+.+.....+....+.|+|+|||||||||..++++. |.+++|+.+||+||++|++||++|.++.
T Consensus 229 ~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~ 308 (373)
T 2wbe_C 229 MNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA 308 (373)
T ss_dssp HHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 689999999999999987654444445556899999999999999999987 9999999999999999999999999999
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 309 ~hvPyRdSkLT~lLqds 325 (373)
T 2wbe_C 309 PHVPYRESKLTRLLQES 325 (373)
T ss_dssp SCCCGGGCHHHHHTHHH
T ss_pred CcCccccchHHHHHHHH
Confidence 99999999998876543
No 37
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=99.90 E-value=3.4e-24 Score=191.92 Aligned_cols=93 Identities=41% Similarity=0.589 Sum_probs=84.0
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||.+|||||+||+|+|....... .....|+|+|||||||||..++++.|.+++|+.+||+||++|++||++|.++..
T Consensus 199 ~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 275 (369)
T 3cob_A 199 MNEQSSRSHLIVSVIIESTNLQT---QAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ 275 (369)
T ss_dssp TTCHHHHSEEEEEEEEEEEETTT---CCEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCcceEEEEEEEEEecCCC---CcEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 79999999999999998765432 234579999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||+++++.++..+
T Consensus 276 hvPyRdSkLT~lLqds 291 (369)
T 3cob_A 276 HIPYRNHKLTMLMSDS 291 (369)
T ss_dssp CCCGGGCHHHHHTTTT
T ss_pred cCCCcCCHHHHHHHHh
Confidence 9999999999887654
No 38
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=99.90 E-value=2.8e-24 Score=192.87 Aligned_cols=93 Identities=42% Similarity=0.503 Sum_probs=61.3
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchh----HHHHhhcchhHHhhhcccchhccc
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQD----KRAREAGNINQSLLTLGRCITALV 76 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~----~~~~E~~~iN~SL~~l~~~i~~l~ 76 (243)
||++|||||+||+|+|....... .....++|+|||||||||..++++.| ++++|+.+||+||++|++||++|.
T Consensus 244 ~N~~SSRSH~Ifti~v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~ 320 (376)
T 2rep_A 244 QNERSSRSHSVFQLQISGEHSSR---GLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALS 320 (376)
T ss_dssp ---CGGGSEEEEEEEEEEEESSS---CCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEEEEEEecCC---CcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHh
Confidence 79999999999999998765432 22357999999999999999999998 999999999999999999999999
Q ss_pred ccCCCcccCCCcchhhcccc
Q psy9445 77 EKTPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 77 ~~~~~~~~~~~~~~E~~~~s 96 (243)
++..|||||+++++.+++.+
T Consensus 321 ~~~~hVPYRdSkLT~LLqds 340 (376)
T 2rep_A 321 NKESHVPYRNSKLTYLLQNS 340 (376)
T ss_dssp TTCSCCCGGGSHHHHHTGGG
T ss_pred cCCCccCCcCCHHHHHHHHh
Confidence 99999999999999887655
No 39
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6e-24 Score=180.87 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=102.7
Q ss_pred HhhhcccchhcccccCCCcc----cCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCCcch--hh
Q psy9445 64 SLLTLGRCITALVEKTPHIP----YRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQV--DV 137 (243)
Q Consensus 64 SL~~l~~~i~~l~~~~~~~~----~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a~q~--ev 137 (243)
.+....+..|.+.+.+++|| +||.... ..+.++.++.. |.+ .. ..++|.||+||++.+.|+ +|
T Consensus 8 E~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p-----~~~~v~y~~~~-I~v-~~----~~k~f~FDRVf~p~s~Qe~~~v 76 (298)
T 2o0a_A 8 ELLRSRRLENSIIEQKGTMRCYAYVMEQNLP-----ENLLFDYENGV-ITQ-GL----SEHVYKFNRVIPHLKVSEDKFF 76 (298)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECGGGSC-----TTEEEETTTTE-EEE-TT----TCCEEECSEEEETTTSCHHHHH
T ss_pred HHHHHHHHHhHHHHhhCceEEEEEeccccCC-----ccceeecCccc-eee-cC----CCceEEeeeEECccccccHHHH
Confidence 33344455566666666665 6664311 12345566544 554 22 137999999999999999 99
Q ss_pred hccccchhHHHHhc-CCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHh-cCCceEEEEE
Q psy9445 138 YKYVVNPLIDEVLS-GYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL-LGDAEFTVRV 215 (243)
Q Consensus 138 ~~~~~~~~v~~~~~-G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~-~~~~~~~v~~ 215 (243)
|++ +.++|+.+++ |||+|||||||||+||| ||++..+|...+. .. +.|.+.+
T Consensus 77 f~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT------------------------~ral~q~f~~~~~~~~-~~Y~~tl 130 (298)
T 2o0a_A 77 TQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL------------------------RESLIKFLAEKDTIYQ-KQYVITL 130 (298)
T ss_dssp HHT-THHHHHHHHHTTCCEEEEEECSSCCHHH------------------------HHHHHHHHHSTTSHHH-HHEEEEE
T ss_pred HHH-HHHHHHHHHhCCCceEEEEECCCCCCcc------------------------HHHHHHHHHHhhhhcc-cceEEEE
Confidence 999 6999999999 99999999999999998 7999999987644 23 8999999
Q ss_pred EEEEEE-CCeEEeCCCCCCCCccceec
Q psy9445 216 SFLEIY-NEELIDLLSPTDDITKLRLK 241 (243)
Q Consensus 216 S~~eiy-ne~v~DLL~~~~~~~~l~i~ 241 (243)
||+||| ||.++|||....+..+++|+
T Consensus 131 q~veLy~Ne~~~DLL~~~~~~~k~eIk 157 (298)
T 2o0a_A 131 QFVFLSDDEFSQDMLLDYSHNDKDSIK 157 (298)
T ss_dssp EEEEEECC-CEEETTSCCC------CE
T ss_pred EEEEEecCCchHHhcCCCCCCCcceEE
Confidence 999999 99999999744443355654
No 40
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=99.89 E-value=1.9e-24 Score=190.86 Aligned_cols=94 Identities=44% Similarity=0.617 Sum_probs=83.8
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||.+|||||+||+|+|.+...... ....|+|+|||||||||..++++.+.+++|+.+||+||++|++||++|.++..
T Consensus 197 ~N~~SSRSH~if~i~v~~~~~~~~---~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~ 273 (325)
T 1bg2_A 197 MNEHSSRSHSIFLINVKQENTQTE---QKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST 273 (325)
T ss_dssp HHHHHHHSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCeEEEEEEEEEEecCCC---cEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 689999999999999987654321 23579999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccce
Q psy9445 81 HIPYRPLNSVERAAKSC 97 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s~ 97 (243)
|||||+++++.+++.+.
T Consensus 274 hvPyRdSkLT~lLqdsL 290 (325)
T 1bg2_A 274 YVPYRDSKMTRILQDSL 290 (325)
T ss_dssp CCCGGGSHHHHHGGGTS
T ss_pred CCcccccHHHHHHHHHh
Confidence 99999999998876543
No 41
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=99.89 E-value=1.3e-24 Score=194.56 Aligned_cols=96 Identities=54% Similarity=0.764 Sum_probs=71.5
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
||.+|||||+||+|+|........+......|+|+|||||||||..++++.+++++|+.+||+||++|++||++|.+++
T Consensus 221 ~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 300 (372)
T 3b6u_A 221 MNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKS 300 (372)
T ss_dssp HHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC--
T ss_pred CCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCC
Confidence 6899999999999999876543333344567999999999999999999999999999999999999999999998864
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 301 ~hvPyRdSkLT~lLqds 317 (372)
T 3b6u_A 301 THIPYRDSKLTRLLQDS 317 (372)
T ss_dssp -CCCGGGSHHHHHTTTT
T ss_pred CCCcccccHHHHHHHHh
Confidence 69999999999887654
No 42
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=99.89 E-value=5.9e-24 Score=189.22 Aligned_cols=96 Identities=40% Similarity=0.547 Sum_probs=75.2
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCC--ccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLD--GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~--~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~ 78 (243)
||.+|||||+||+|+|........ .......|+|+|||||||||..++++.|.+++|+.+||+||++|++||++|.++
T Consensus 195 ~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~ 274 (349)
T 1t5c_A 195 MNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDG 274 (349)
T ss_dssp SSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhcc
Confidence 799999999999999987654321 122345799999999999999999999999999999999999999999999876
Q ss_pred C--CCcccCCCcchhhcccc
Q psy9445 79 T--PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 79 ~--~~~~~~~~~~~E~~~~s 96 (243)
. .|||||+++++.+++.+
T Consensus 275 ~~~~hvPyRdSkLT~lLqds 294 (349)
T 1t5c_A 275 QVGGFINYRDSKLTRILQNS 294 (349)
T ss_dssp CCTTSSCGGGSHHHHHTGGG
T ss_pred CCCCCCcccccHHHHHHHHh
Confidence 4 69999999999886654
No 43
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=99.89 E-value=7.5e-24 Score=188.47 Aligned_cols=96 Identities=40% Similarity=0.574 Sum_probs=65.2
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCC-----ccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcc
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLD-----GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 75 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~-----~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l 75 (243)
||++|||||+||+|+|.+...... .......|+|+|||||||||..++++.+++++|+.+||+||++|++||++|
T Consensus 207 ~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL 286 (344)
T 4a14_A 207 LNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISAL 286 (344)
T ss_dssp --CCGGGSEEEEEEEEEEEC------------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHH
T ss_pred hhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhc
Confidence 799999999999999987642211 112335799999999999999999999999999999999999999999999
Q ss_pred ccc---CCCcccCCCcchhhcccc
Q psy9445 76 VEK---TPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 76 ~~~---~~~~~~~~~~~~E~~~~s 96 (243)
.+. ..|||||+++++.+++.+
T Consensus 287 ~~~~~~~~hvPyRdSkLT~lLqds 310 (344)
T 4a14_A 287 GDPQRRGSHIPYRDSKITRILKDS 310 (344)
T ss_dssp TCTTTTTSCCCGGGCHHHHHTTTS
T ss_pred CCccccCCCCCcchhhHHHHhHhh
Confidence 864 469999999999887654
No 44
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=99.89 E-value=9.5e-24 Score=188.33 Aligned_cols=96 Identities=44% Similarity=0.573 Sum_probs=72.2
Q ss_pred CCCCCCcceEEEEEEEEEEeCC-CCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccc--
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNS-LDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-- 77 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~-~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~-- 77 (243)
||+.|||||+||+|+|.+.... ..+......|+|+|||||||||..++++.+++++|+.+||+||++|++||++|.+
T Consensus 212 ~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~ 291 (354)
T 3gbj_A 212 MNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQS 291 (354)
T ss_dssp ----CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhh
Confidence 7999999999999999765322 2233334579999999999999999999999999999999999999999999985
Q ss_pred ----cCCCcccCCCcchhhcccc
Q psy9445 78 ----KTPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 78 ----~~~~~~~~~~~~~E~~~~s 96 (243)
+..|||||+++++.+++.+
T Consensus 292 ~~~~~~~hvPyRdSkLT~lLqds 314 (354)
T 3gbj_A 292 AGKNKNKFVPYRDSVLTWLLKDS 314 (354)
T ss_dssp -----CCCCCGGGSHHHHHTHHH
T ss_pred cccCCCCcccccccHHHHHHHHH
Confidence 3579999999998876544
No 45
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=99.89 E-value=1.2e-23 Score=187.69 Aligned_cols=93 Identities=45% Similarity=0.649 Sum_probs=82.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-C
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-T 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-~ 79 (243)
||.+|||||+||+|+|.+..... .....|+|+|||||||||..++++.|++++|+.+||+||++|++||++|.++ .
T Consensus 201 ~N~~SSRSH~if~i~v~~~~~~~---~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~ 277 (355)
T 1goj_A 201 MNQESSRSHSIFVITITQKNVET---GSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKS 277 (355)
T ss_dssp TTCCGGGCEEEEEEEEEEEETTT---TEEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSC
T ss_pred CCCCCCCceEEEEEEEEEeccCC---CceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 79999999999999998775432 2345799999999999999999999999999999999999999999999886 5
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 278 ~hvPyRdSkLT~lLqds 294 (355)
T 1goj_A 278 SHVPYRDSKLTRILQES 294 (355)
T ss_dssp SCCCGGGCHHHHHTGGG
T ss_pred CCCCCccCHHHHHHHHH
Confidence 89999999999876654
No 46
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=99.89 E-value=7.1e-24 Score=189.92 Aligned_cols=96 Identities=42% Similarity=0.563 Sum_probs=74.6
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCC-ccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLD-GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK- 78 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~-~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~- 78 (243)
||++|||||+||+|+|.+...... +......|+|+|||||||||..++++.|.+++|+.+||+||++|++||++|.+.
T Consensus 210 ~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~ 289 (366)
T 2zfi_A 210 MNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMD 289 (366)
T ss_dssp TTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcceEEEEEEEEEecccCCCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcc
Confidence 899999999999999987643221 222345799999999999999999999999999999999999999999999863
Q ss_pred -----------CCCcccCCCcchhhcccc
Q psy9445 79 -----------TPHIPYRPLNSVERAAKS 96 (243)
Q Consensus 79 -----------~~~~~~~~~~~~E~~~~s 96 (243)
..|||||+++++.+++.+
T Consensus 290 ~~~~~~~~~~~~~hvPyRdSkLT~lLqds 318 (366)
T 2zfi_A 290 SGPNKNKKKKKTDFIPYRDSVLTWLLREN 318 (366)
T ss_dssp --------------CCGGGSHHHHHTGGG
T ss_pred cccccccccccCCcccccccHHHHHHHHH
Confidence 479999999999887655
No 47
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=99.89 E-value=4.4e-24 Score=190.56 Aligned_cols=95 Identities=44% Similarity=0.608 Sum_probs=61.4
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-C
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-T 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-~ 79 (243)
||+.|||||+||+|+|......... .....|+|+|||||||||..++++.+++++|+.+||+||++|++||.+|.+. .
T Consensus 227 ~N~~SSRSH~If~i~v~~~~~~~~~-~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 305 (358)
T 2nr8_A 227 MNKNSSRSHCIFTIYLEAHSRTLSE-EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR 305 (358)
T ss_dssp HTCCGGGCEEEEEEEEEEC--------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC---
T ss_pred CCCCCCcCeEEEEEEEEEEeccCCC-CCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7999999999999999875433222 2234799999999999999999999999999999999999999999999875 5
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 306 ~hiPyRdSkLT~LLqds 322 (358)
T 2nr8_A 306 DHIPFRQCKLTHALKDS 322 (358)
T ss_dssp --CCGGGSHHHHHTHHH
T ss_pred CcCCCccCHHHHHHHHh
Confidence 79999999999876644
No 48
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=99.88 E-value=4.5e-24 Score=190.59 Aligned_cols=95 Identities=45% Similarity=0.623 Sum_probs=61.5
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-C
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-T 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-~ 79 (243)
||.+|||||+||+|+|+....... ......|+|+|||||||||..++++.+++++|+.+||+||++|++||++|.+. .
T Consensus 228 ~N~~SSRSH~if~i~i~~~~~~~~-~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~ 306 (359)
T 3nwn_A 228 MNKNSSRSHCIFTIYLEAHSRTLS-EEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR 306 (359)
T ss_dssp HTCCGGGCEEEEEEEEEEC--------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC---
T ss_pred CccccCcceEEEEEEEEeeccccc-CcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCC
Confidence 799999999999999987643322 22345799999999999999999999999999999999999999999999875 5
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 307 ~hVPYRdSkLT~lLqds 323 (359)
T 3nwn_A 307 DHIPFRQCKLTHALKDS 323 (359)
T ss_dssp --CCGGGSHHHHHTHHH
T ss_pred CcCCcccCHHHHHHHHh
Confidence 79999999998876544
No 49
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1e-23 Score=191.07 Aligned_cols=93 Identities=44% Similarity=0.528 Sum_probs=81.9
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC-
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT- 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~- 79 (243)
||.+|||||+||+|+|........ ....|+|+|||||||||..++++.|++++|+.+||+||++|++||++|.+..
T Consensus 266 ~N~~SSRSH~if~i~v~~~~~~~~---~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 342 (403)
T 4etp_A 266 SNEHSSRSHSIFIIHLSGSNAKTG---AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDS 342 (403)
T ss_dssp HHHHHHTSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CCcccCCcccEEEEEEEEeecCCC---CeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 689999999999999987654322 2347999999999999999999999999999999999999999999998765
Q ss_pred --CCcccCCCcchhhcccc
Q psy9445 80 --PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 --~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 343 ~~~hiPyRdSkLT~LLqds 361 (403)
T 4etp_A 343 TKRHIPFRNSKLTYLLQYS 361 (403)
T ss_dssp TTSCCCGGGSHHHHHTGGG
T ss_pred CCCcCCcccchHHHHHHHh
Confidence 49999999999887654
No 50
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=99.88 E-value=6.9e-24 Score=188.36 Aligned_cols=88 Identities=36% Similarity=0.533 Sum_probs=63.0
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||+.|||||+||+|+|... ...|+|+|||||||||..++++.+++++|+.+||+||++|++||++|.++..
T Consensus 213 ~N~~SSRSH~Ifti~v~~~---------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~ 283 (344)
T 3dc4_A 213 MNSNSSRSHAIVTIHVKSK---------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHT 283 (344)
T ss_dssp -----CCEEEEEEEEEECS---------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCS
T ss_pred CCCCCCCceEEEEEEEEec---------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCC
Confidence 7999999999999998532 1368999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCcchhhcccce
Q psy9445 81 HIPYRPLNSVERAAKSC 97 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s~ 97 (243)
|||||+++++.+++.+.
T Consensus 284 hiPyRdSkLT~lLqdsL 300 (344)
T 3dc4_A 284 VIPYRDSVLTTVLQASL 300 (344)
T ss_dssp SCCGGGSHHHHHTTTTS
T ss_pred cCCccccHHHHHHHHHh
Confidence 99999999998876543
No 51
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=99.88 E-value=1.2e-23 Score=192.30 Aligned_cols=96 Identities=42% Similarity=0.565 Sum_probs=65.7
Q ss_pred CCCCCCcceEEEEEEEEEEeCCC-CccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSL-DGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~-~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~ 79 (243)
||.+|||||+||+|+|.+..... .+....+.|+|+|||||||||..++++.|++++|+.+||+||++|++||++|.+..
T Consensus 261 ~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~ 340 (443)
T 2owm_A 261 MNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPK 340 (443)
T ss_dssp SSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC--
T ss_pred CCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccc
Confidence 89999999999999998754221 12233457999999999999999999999999999999999999999999998743
Q ss_pred ----------------------CCcccCCCcchhhcccc
Q psy9445 80 ----------------------PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ----------------------~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.++..+
T Consensus 341 ~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqds 379 (443)
T 2owm_A 341 SSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDS 379 (443)
T ss_dssp -----------------------CCCGGGSHHHHHSTTT
T ss_pred ccccccccccccccccccccCCCcccCcccHhHHHHHHh
Confidence 38999999999887654
No 52
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=99.88 E-value=5.5e-24 Score=190.37 Aligned_cols=93 Identities=44% Similarity=0.625 Sum_probs=66.5
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-C
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-T 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-~ 79 (243)
||.+|||||+||+|+|.+...... ....|+|+|||||||||..++++.|.+++|+.+||+||++|++||++|.++ +
T Consensus 204 ~N~~SSRSH~if~i~v~~~~~~~~---~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~ 280 (365)
T 2y65_A 204 MNEHSSRSHSVFLINVKQENLENQ---KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNK 280 (365)
T ss_dssp HHHHHHTSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCceEEEEEEEEEEecCCC---CEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 689999999999999987654321 234799999999999999999999999999999999999999999999886 5
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 281 ~hvPyRdSkLT~lLqds 297 (365)
T 2y65_A 281 THIPYRDSKLTRILQES 297 (365)
T ss_dssp SCCCGGGCHHHHHTGGG
T ss_pred CCCccccCHHHHHHHhh
Confidence 89999999999876654
No 53
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=99.87 E-value=3.8e-23 Score=184.60 Aligned_cols=90 Identities=34% Similarity=0.504 Sum_probs=79.3
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchh-HHHHhhcchhHHhhhcccchhcccccC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQD-KRAREAGNINQSLLTLGRCITALVEKT 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~-~~~~E~~~iN~SL~~l~~~i~~l~~~~ 79 (243)
||++|||||+||+|+|..... ....|+|+|||||||||..++++.+ ++++|+.+||+||++|++||++|.++.
T Consensus 205 ~N~~SSRSH~if~i~v~~~~~------~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~ 278 (360)
T 1ry6_A 205 QNDESSRSHAILNIDLKDINK------NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK 278 (360)
T ss_dssp CTTGGGGSEEEEEEEEEETTT------TEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ccCCCccceEEEEEEEEeccC------CcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999875321 1347999999999999999998876 567899999999999999999999999
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 279 ~hvPyRdSkLT~lLqds 295 (360)
T 1ry6_A 279 NHIPFRDSELTKVLRDI 295 (360)
T ss_dssp TSCCGGGCHHHHHTGGG
T ss_pred CCCccccCHHHHHHHHH
Confidence 99999999999887654
No 54
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.86 E-value=1.5e-22 Score=195.94 Aligned_cols=93 Identities=41% Similarity=0.526 Sum_probs=70.8
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhccccc-C
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-T 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~-~ 79 (243)
||.+|||||+||+|+|........ ....|+|+|||||||||..++++.++|++|+.+||+||++|++||++|.++ .
T Consensus 582 ~n~~ssRSH~i~~i~~~~~~~~~~---~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~ 658 (715)
T 4h1g_A 582 SNDHSSRSHSIFIIDLQGYNSLTK---ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDG 658 (715)
T ss_dssp ---CGGGSEEEEEEEEEEEETTTC---CEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ccCccccccEEEEEEEEEEecCCC---CEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 799999999999999987764322 235799999999999999999999999999999999999999999999754 5
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 659 ~~vpyR~SkLT~lL~~s 675 (715)
T 4h1g_A 659 SHVPYRNSKLTYLLKHS 675 (715)
T ss_dssp CCCCGGGCHHHHHTGGG
T ss_pred CcCCCccCHHHHHHHhh
Confidence 89999999999887654
No 55
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=99.86 E-value=8.3e-23 Score=183.59 Aligned_cols=88 Identities=38% Similarity=0.550 Sum_probs=64.1
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCc-hhHHHHhhcchhHHhhhcccchhcccccC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGA-QDKRAREAGNINQSLLTLGRCITALVEKT 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~-~~~~~~E~~~iN~SL~~l~~~i~~l~~~~ 79 (243)
||++|||||+||+|+|.... ...|+|+|||||||||..+++. .+++++|+.+||+||++|++||++|.++.
T Consensus 257 ~N~~SSRSH~Ifti~v~~~~--------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~ 328 (387)
T 2heh_A 257 ANSNSSRSHACFQIILRAKG--------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 328 (387)
T ss_dssp ---CGGGSEEEEEEEEESSS--------SEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCcccceEEEEEEEEECC--------eeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCC
Confidence 79999999999999986431 2479999999999999988864 56788899999999999999999999999
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.+++.+
T Consensus 329 ~hvPYRdSKLTrlLqds 345 (387)
T 2heh_A 329 AHTPFRESKLTQVLRDS 345 (387)
T ss_dssp SCCCGGGSHHHHHTGGG
T ss_pred CCCCccccHHHHHHhhh
Confidence 99999999999876654
No 56
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=99.85 E-value=1.1e-22 Score=183.86 Aligned_cols=88 Identities=38% Similarity=0.546 Sum_probs=60.6
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCc-hhHHHHhhcchhHHhhhcccchhcccccC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGA-QDKRAREAGNINQSLLTLGRCITALVEKT 79 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~-~~~~~~E~~~iN~SL~~l~~~i~~l~~~~ 79 (243)
||.+|||||+||+|+|.... ...|+|+|||||||||..+++. .+++++|+.+||+||++|++||++|.++.
T Consensus 277 ~N~~SSRSH~Ifti~v~~~~--------~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~ 348 (410)
T 1v8k_A 277 ANSNSSRSHACFQILLRTKG--------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK 348 (410)
T ss_dssp ---CCCSSEEEEEEEEESSS--------SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCCCCceEEEEEEEEeCC--------cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 79999999999999986431 1479999999999999988864 56788899999999999999999999999
Q ss_pred CCcccCCCcchhhcccc
Q psy9445 80 PHIPYRPLNSVERAAKS 96 (243)
Q Consensus 80 ~~~~~~~~~~~E~~~~s 96 (243)
.|||||+++++.++..+
T Consensus 349 ~hIPYRdSKLTrLLqds 365 (410)
T 1v8k_A 349 AHTPFRESKLTQVLRDS 365 (410)
T ss_dssp ----CCCCHHHHHTTHH
T ss_pred CCCCcccchhHHHHhhc
Confidence 99999999998876544
No 57
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=99.85 E-value=5.4e-22 Score=179.99 Aligned_cols=89 Identities=38% Similarity=0.481 Sum_probs=70.0
Q ss_pred CCCCCCcceEEEEEEEEEEeCCCCccceeeeceEEEEecccCccccCCCchhHHHHhhcchhHHhhhcccchhcccccCC
Q psy9445 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP 80 (243)
Q Consensus 1 ~n~~ssrsh~i~~i~i~~~~~~~~~~~~~~~~~l~lvDLaGse~~~~~~~~~~~~~E~~~iN~SL~~l~~~i~~l~~~~~ 80 (243)
||.+|||||+||+|+|........ ....|+|+|||||||||.. .+.+++|+.+||+||++|++||++|.++..
T Consensus 258 ~N~~SSRSH~if~i~v~~~~~~~~---~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~ 330 (412)
T 3u06_A 258 GNERSSRSHAVTKLELIGRHAEKQ---EISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQD 330 (412)
T ss_dssp CHHHHTTCEEEEEEEEEEEETTTT---EEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCcCceEEEEEEEEEEeCCCC---CEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCC
Confidence 799999999999999987654322 2357999999999999974 357999999999999999999999999999
Q ss_pred CcccCCCcchhhcccc
Q psy9445 81 HIPYRPLNSVERAAKS 96 (243)
Q Consensus 81 ~~~~~~~~~~E~~~~s 96 (243)
|||||+++++.++..+
T Consensus 331 hiPyRdSkLT~LLqds 346 (412)
T 3u06_A 331 HIPYRNSKLTHLLMPS 346 (412)
T ss_dssp CCCGGGSHHHHHHGGG
T ss_pred CCCccccHHHHHHHHh
Confidence 9999999999887654
No 58
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=98.13 E-value=3.2e-07 Score=66.77 Aligned_cols=38 Identities=42% Similarity=0.594 Sum_probs=33.5
Q ss_pred hcchhHHhhhcccchhccccc-CCCcccCCCcchhhccc
Q psy9445 58 AGNINQSLLTLGRCITALVEK-TPHIPYRPLNSVERAAK 95 (243)
Q Consensus 58 ~~~iN~SL~~l~~~i~~l~~~-~~~~~~~~~~~~E~~~~ 95 (243)
+.+||+||++||+||++|.++ ..|||||+++.+.+.+.
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~d 39 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQD 39 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHH
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHH
Confidence 468999999999999999987 68999999999877553
No 59
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=97.24 E-value=4.2e-05 Score=57.17 Aligned_cols=34 Identities=38% Similarity=0.574 Sum_probs=29.8
Q ss_pred hHHhhhcccchhccccc-CCCcccCCCcchhhccc
Q psy9445 62 NQSLLTLGRCITALVEK-TPHIPYRPLNSVERAAK 95 (243)
Q Consensus 62 N~SL~~l~~~i~~l~~~-~~~~~~~~~~~~E~~~~ 95 (243)
|+||++||+||.+|.++ ..|||||+++.+.+...
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~d 35 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQD 35 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHH
Confidence 79999999999999987 47999999999877543
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.27 E-value=0.0093 Score=46.69 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=30.2
Q ss_pred EecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+||........|.++++.+ ..+++++-......++-||++|+|||+.+
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 46666554445566666543 44444332222345778999999999987
No 61
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=93.08 E-value=0.27 Score=42.35 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=81.9
Q ss_pred hHHhhhcccchhcccccCCCcccCCCcchhhcccceeeeecCCceEEEEecCCCCCcceEEecceeecCCC--cchhhhc
Q psy9445 62 NQSLLTLGRCITALVEKTPHIPYRPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQES--KQVDVYK 139 (243)
Q Consensus 62 N~SL~~l~~~i~~l~~~~~~~~~~~~~~~E~~~~s~~iv~~~~~~ti~v~~~~~~~~~~~f~fD~vF~~~a--~q~ev~~ 139 (243)
.+.++...++=+++.+.+++||+----.... .+.-..|...+ ++|+ + ....+.|.|++++.... .+..+|+
T Consensus 41 eqE~lrRRkLENSIdElKG~IRcFAYi~~~~-~p~~~~idY~~-~~It--~---~~~~~~y~FnRiIp~~~~~e~~~l~q 113 (333)
T 4etp_B 41 CKELLRSRRLENSIIEQKGTMRVYAYVMEQN-LPENLLFDYEN-GVIT--Q---GLSEHVYKFNRVIPHLKVSEDCFFTQ 113 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-CCSSCEEETTT-TEEE--C-----CCCEEECSEEEETTTCCHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHhcCcEEEEEEECccc-CCccEEEeccc-ceEe--e---cCCcceEEEeeeechhhcchHHHHHH
Confidence 3444444555566667778887322111111 11112333332 3443 1 11357999999997765 5555555
Q ss_pred cccchhHHHHh-cCCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHhc---CCceEEEEE
Q psy9445 140 YVVNPLIDEVL-SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL---GDAEFTVRV 215 (243)
Q Consensus 140 ~~~~~~v~~~~-~G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~~~~lf~~~~~~---~~~~~~v~~ 215 (243)
. .+..++-++ .+.|+.|+.-|+.- + +..-..|+..+... -.+.|.+.+
T Consensus 114 E-~q~y~DmcL~~~~NfslIsis~~~------------w---------------~~Lr~~lL~fi~~k~~~Y~~~y~i~l 165 (333)
T 4etp_B 114 E-YSVYHDMALNQKKNFNLISLSTTP------------H---------------GSLRESLIKFLAEKDTIYQKQYVITL 165 (333)
T ss_dssp T-THHHHHHHHHTTCCEEEEEEESSC------------C---------------CHHHHHHHHHHHSTTCHHHHHEEEEE
T ss_pred H-HHHHHHHHHccCCCeeEEEecCCC------------c---------------HHHHHHHHHHHHhcccccccceEEEE
Confidence 5 588899888 69999998887541 1 23444555555543 136789999
Q ss_pred EEEEEECCe-EEeCCCCC
Q psy9445 216 SFLEIYNEE-LIDLLSPT 232 (243)
Q Consensus 216 S~~eiyne~-v~DLL~~~ 232 (243)
.|+.+-++. ..|||.+.
T Consensus 166 Q~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 166 QFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp EEEECCSSSCCEESSCC-
T ss_pred EEEEEcCCCchhhhhccc
Confidence 998887665 79999986
No 62
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.82 E-value=0.056 Score=42.83 Aligned_cols=51 Identities=16% Similarity=0.322 Sum_probs=29.5
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhcCC-ceEEEEeccCCCCcceEee
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY-NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~-n~~i~ayG~tgsGKt~Tm~ 172 (243)
..+||........+.++++. +...+...-.+. +..++-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 34666555444345555553 233333322222 2678899999999999874
No 63
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.91 E-value=0.059 Score=46.36 Aligned_cols=20 Identities=25% Similarity=0.694 Sum_probs=16.9
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
...|+-||++|+||||.+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 56788999999999998743
No 64
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.89 E-value=0.1 Score=39.91 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=21.8
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..+++.+..+....++-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 334444445666778999999999998763
No 65
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.29 E-value=0.11 Score=39.69 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=21.8
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..+++.+..+....++-||++|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 334444445666778999999999998763
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.21 E-value=0.098 Score=45.41 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=19.6
Q ss_pred HhcCCceEEEEeccCCCCcceEe
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+-.|...+++-||++|+|||.++
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHH
Confidence 34577889999999999999876
No 67
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.80 E-value=0.18 Score=42.83 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=25.8
Q ss_pred eEEEEeccCCCCcceEeecCCC---CCC-CCC--CCCCCCCCchhHHHHHHHHHH
Q psy9445 155 CTVFAYGQTGTGKTFTMEGEKS---NDP-SIS--WQDDPLSGIVPRAMNHLFDEL 203 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G~~~---~~~-~~~--~~~~~~~Gii~r~~~~lf~~~ 203 (243)
..++-||++|+|||+...--.. .+. ... .-.....|-.+..+..+|...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 91 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 91 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHH
Confidence 4678899999999987632100 000 000 000112366777778888766
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.75 E-value=0.17 Score=41.79 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=15.6
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..|+-||.+|+|||+..
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3467888999999999765
No 69
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=82.57 E-value=0.21 Score=43.05 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=16.8
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+....++-||++|+|||+.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 45567899999999999876
No 70
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=82.01 E-value=0.32 Score=41.62 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=27.0
Q ss_pred eEEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 120 ~~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..++|+.+++.. .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 356777766542 22221 222334334445999999999999875
No 71
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=82.01 E-value=0.48 Score=37.79 Aligned_cols=24 Identities=46% Similarity=0.577 Sum_probs=19.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556677866 67889999999987
No 72
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.98 E-value=0.58 Score=37.27 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=16.7
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+....++-||++|+|||+.+
T Consensus 50 ~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 35667889999999999875
No 73
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=81.84 E-value=0.39 Score=36.50 Aligned_cols=18 Identities=22% Similarity=0.696 Sum_probs=14.4
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..++-+|++|+|||+.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp SEEEEESSSTTTTCHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356679999999998763
No 74
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.12 E-value=0.31 Score=40.55 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=28.9
Q ss_pred EEecceeecCCCcchhhhccccchhHH-HHh----cCCceEEEEeccCCCCcceEee
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLID-EVL----SGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~-~~~----~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.++|+.+.+.+..-..+.+.+..++.. ..+ -.....++-||++|+|||+.+.
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 466777766544434443332222111 111 1234568899999999997663
No 75
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.96 E-value=0.7 Score=38.23 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=17.8
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 456678999999999999875
No 76
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=80.76 E-value=0.38 Score=37.57 Aligned_cols=20 Identities=35% Similarity=0.306 Sum_probs=15.9
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+....++-||++|+|||+.+
T Consensus 36 ~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 36 KNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 43335899999999999875
No 77
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.74 E-value=0.55 Score=36.77 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=18.4
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 3456677766 56778999999986
No 78
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.32 E-value=0.58 Score=42.01 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=21.3
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
++..++..-...+...|+||||||.+|.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4555555555678889999999999874
No 79
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=80.19 E-value=0.57 Score=41.11 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=22.2
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+.+..++.--...+...|+||||||.++.
T Consensus 112 ~~~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 112 GEVFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp CHHHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred hHHHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 345556555555678888999999999883
No 80
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.30 E-value=0.39 Score=39.55 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=27.8
Q ss_pred EEecceeecCCCcchhhhccccchhHH-HHh----cCCceEEEEeccCCCCcceEe
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLID-EVL----SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~-~~~----~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|+.+.+.+.....+.+. +..+-. ..+ ......++-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 45677777665544444322 221110 011 122345889999999999876
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=78.17 E-value=1.1 Score=34.95 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=18.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4556677766 567899999999654
No 82
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.15 E-value=0.79 Score=39.47 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=21.6
Q ss_pred chhHHHHhcCCce--EEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLSGYNC--TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~G~n~--~i~ayG~tgsGKt~Tm~ 172 (243)
..+++.+..|... .++-||++|+|||+...
T Consensus 57 ~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 57 GVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3345555556553 78999999999998763
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=77.90 E-value=0.58 Score=34.97 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=15.7
Q ss_pred CceEEEEeccCCCCcceEee
Q psy9445 153 YNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+..|+-||++|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34558889999999998653
No 84
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=77.34 E-value=0.65 Score=40.06 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=19.5
Q ss_pred hHHHHhcCC-ce--EEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGY-NC--TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~-n~--~i~ayG~tgsGKt~Tm 171 (243)
.+...+.|. .. .++-||++|+|||..+
T Consensus 32 ~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 32 LLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp HHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 444554443 24 6889999999999876
No 85
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=77.08 E-value=0.57 Score=39.68 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=15.2
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|+-||++|+|||+.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 456899999999999764
No 86
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=77.01 E-value=0.74 Score=34.40 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=16.2
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 44566889999999998765
No 87
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.90 E-value=0.9 Score=40.95 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=27.2
Q ss_pred EecceeecCCCcchhhhccccchhHHHHhcCCc--eEEEEeccCCCCcceEe
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n--~~i~ayG~tgsGKt~Tm 171 (243)
+.|+.+.+ |+++.+. +..+++.+..|.. ..++-||++|+|||+..
T Consensus 34 ~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 34 QAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 33455544 4444333 2345555555543 36888999999999765
No 88
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.71 E-value=0.64 Score=41.99 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=43.5
Q ss_pred ecceeecCCCcchhhhccccchhHH-HHhc--C--CceEEEEeccCCCCcceEe--------------ecCCCCCCCCCC
Q psy9445 123 GFDRVFSQESKQVDVYKYVVNPLID-EVLS--G--YNCTVFAYGQTGTGKTFTM--------------EGEKSNDPSISW 183 (243)
Q Consensus 123 ~fD~vF~~~a~q~ev~~~~~~~~v~-~~~~--G--~n~~i~ayG~tgsGKt~Tm--------------~G~~~~~~~~~~ 183 (243)
+||-+-+.+..-.++.+.++.|+.. ..+. | ..-.|+-||+.|+|||... -|..-
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l------- 251 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL------- 251 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG-------
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh-------
Confidence 4555555544444444444555443 2333 3 3456899999999998543 22211
Q ss_pred CCCCCCCchhHHHHHHHHHHHh
Q psy9445 184 QDDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 184 ~~~~~~Gii~r~~~~lf~~~~~ 205 (243)
-....|--.+.++.+|.....
T Consensus 252 -~~~~vGese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 252 -VQMYIGEGAKLVRDAFALAKE 272 (434)
T ss_dssp -CSSCSSHHHHHHHHHHHHHHH
T ss_pred -hhcccchHHHHHHHHHHHHHh
Confidence 112247777888888876654
No 89
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=76.56 E-value=1.2 Score=36.11 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=19.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4556677877 67889999999986
No 90
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.48 E-value=0.45 Score=41.43 Aligned_cols=20 Identities=35% Similarity=0.559 Sum_probs=16.4
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
.....|+-||++|+|||+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34567899999999999765
No 91
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.12 E-value=0.21 Score=42.10 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=24.8
Q ss_pred EecceeecCCCcchhhhccccchhHH-HHhcCCc----eEEEEeccCCCCcceEe
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLID-EVLSGYN----CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~-~~~~G~n----~~i~ayG~tgsGKt~Tm 171 (243)
.+|+.+-+.+.-..++.+.++.|+-. .++.+.+ ..++-||++|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 34555554444344444444444332 2333222 22889999999998764
No 92
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.84 E-value=0.55 Score=39.28 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.4
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...++-||++|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467899999999999765
No 93
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=75.64 E-value=0.72 Score=37.37 Aligned_cols=25 Identities=48% Similarity=0.680 Sum_probs=19.4
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4556677866 677999999999773
No 94
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=75.45 E-value=0.58 Score=38.29 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=14.1
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++-||++|+|||+.+
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3889999999999875
No 95
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.93 E-value=0.59 Score=40.11 Aligned_cols=20 Identities=45% Similarity=0.670 Sum_probs=16.5
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+....++-||++|+|||..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34557889999999999876
No 96
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=74.66 E-value=1.3 Score=37.52 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=20.4
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|..-.+++.++||||||...
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 455677774455788999999999763
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=74.55 E-value=1.1 Score=37.27 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=14.8
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...+...|++|||||.++
T Consensus 25 g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SEEEEEECSTTCSHHHHH
T ss_pred CCEEEEECCCCccHHHHH
Confidence 456677899999999887
No 98
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.47 E-value=3.1 Score=37.38 Aligned_cols=76 Identities=25% Similarity=0.384 Sum_probs=44.3
Q ss_pred ecceeecCCCcchhhhccccchhHH-HHhc--CC--ceEEEEeccCCCCcceEe--------------ecCCCCCCCCCC
Q psy9445 123 GFDRVFSQESKQVDVYKYVVNPLID-EVLS--GY--NCTVFAYGQTGTGKTFTM--------------EGEKSNDPSISW 183 (243)
Q Consensus 123 ~fD~vF~~~a~q~ev~~~~~~~~v~-~~~~--G~--n~~i~ayG~tgsGKt~Tm--------------~G~~~~~~~~~~ 183 (243)
+||-+-+.+.--.++.+.+..|+.. ..+. |. .-.|+-||+.|+|||... .|..-
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l------- 242 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF------- 242 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT-------
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh-------
Confidence 4555555444334444433344432 2333 32 345999999999998543 23211
Q ss_pred CCCCCCCchhHHHHHHHHHHHhc
Q psy9445 184 QDDPLSGIVPRAMNHLFDELRLL 206 (243)
Q Consensus 184 ~~~~~~Gii~r~~~~lf~~~~~~ 206 (243)
-+...|--.+.++++|......
T Consensus 243 -~~~~~Ge~e~~ir~lF~~A~~~ 264 (428)
T 4b4t_K 243 -VHKYLGEGPRMVRDVFRLAREN 264 (428)
T ss_dssp -CCSSCSHHHHHHHHHHHHHHHT
T ss_pred -hccccchhHHHHHHHHHHHHHc
Confidence 1223588899999999987653
No 99
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=74.43 E-value=0.93 Score=37.46 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=18.8
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..++.|.+ +++.++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 4556677866 67789999999976
No 100
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.39 E-value=0.92 Score=36.92 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHHhcCCc--eEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n--~~i~ayG~tgsGKt~Tm 171 (243)
+..++.|.. -+++-||+.|+|||+..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 444555532 46999999999999663
No 101
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=74.34 E-value=1.4 Score=37.18 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=21.1
Q ss_pred hHHHHhcCC---ceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGY---NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~---n~~i~ayG~tgsGKt~Tm 171 (243)
.+...++|. .-||+-||+.|+|||+..
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 466777776 347999999999998754
No 102
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.25 E-value=0.78 Score=39.09 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=17.2
Q ss_pred HHhcCCceEEEEeccCCCCcceEe
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..|....++-||++|+|||+.+
T Consensus 52 ~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 52 TLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHhcCCCCEEEEECCCCCCHHHHH
Confidence 334453334889999999999765
No 103
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.22 E-value=0.94 Score=36.84 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=15.8
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999876
No 104
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.11 E-value=1.4 Score=35.09 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=18.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.++ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34566778764 67899999999753
No 105
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=73.94 E-value=1.5 Score=35.17 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=18.2
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ ++..++||||||.+
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~ 78 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHH
Confidence 3455677866 56678999999986
No 106
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.65 E-value=0.63 Score=39.94 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=40.2
Q ss_pred ecceeecCCCcchhhhccccchhHH-HHhcCC---ceEEEEeccCCCCcceEeecCCCC--CCCC-----CCCCCCCCCc
Q psy9445 123 GFDRVFSQESKQVDVYKYVVNPLID-EVLSGY---NCTVFAYGQTGTGKTFTMEGEKSN--DPSI-----SWQDDPLSGI 191 (243)
Q Consensus 123 ~fD~vF~~~a~q~ev~~~~~~~~v~-~~~~G~---n~~i~ayG~tgsGKt~Tm~G~~~~--~~~~-----~~~~~~~~Gi 191 (243)
+|+.+.+.+.....+.+.+..|+-. .++.|. .-.|+-||++|+|||+...--... .... ..-.....|-
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~ 89 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGE 89 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhH
Confidence 4565655543333333333223221 233332 246889999999999865211000 0000 0001112355
Q ss_pred hhHHHHHHHHHHHh
Q psy9445 192 VPRAMNHLFDELRL 205 (243)
Q Consensus 192 i~r~~~~lf~~~~~ 205 (243)
....++.+|.....
T Consensus 90 ~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 90 SEKLVKNLFQLARE 103 (322)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67778888876654
No 107
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=72.97 E-value=0.73 Score=39.20 Aligned_cols=19 Identities=42% Similarity=0.795 Sum_probs=16.0
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...++-||++|+|||+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3568899999999998874
No 108
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=72.92 E-value=1.6 Score=35.43 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=18.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4556777876 566789999999753
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.87 E-value=0.98 Score=38.95 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=19.8
Q ss_pred hHHHHhcC-CceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSG-YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G-~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.| ....++-||++|+|||..+
T Consensus 35 ~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 35 AIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 44444443 3457999999999999876
No 110
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=72.61 E-value=1.2 Score=39.08 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=19.5
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+.+..+.-.....+...|++|||||.++
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 4444443334456778899999999887
No 111
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.53 E-value=1.8 Score=38.98 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=25.6
Q ss_pred CcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 132 SKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 132 a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
..|..+... ...+...+-.|.-..++-||++|+|||+...
T Consensus 29 vGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 29 IGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred CCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 344555432 2344444445655689999999999997663
No 112
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.52 E-value=1.5 Score=36.64 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=16.0
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
....++-||++|+|||+..
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3446899999999999877
No 113
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=72.12 E-value=1.8 Score=34.30 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=18.8
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||+|||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 4556677876 566789999999754
No 114
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.08 E-value=0.91 Score=38.93 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=17.2
Q ss_pred HhcCCceEEEEeccCCCCcceEee
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+-.|.-..++-||++|+|||+++.
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHH
Confidence 334543337889999999998763
No 115
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=72.00 E-value=0.65 Score=36.47 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
++.+++|.+ ++..++||+|||.+..
T Consensus 42 i~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 42 AQPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 445566655 5678999999998754
No 116
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=70.84 E-value=1.8 Score=38.74 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=20.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..++.|.+-.++..++||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 45566777666789999999999976
No 117
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=70.54 E-value=2 Score=37.20 Aligned_cols=25 Identities=48% Similarity=0.678 Sum_probs=20.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 4566778887 677999999999863
No 118
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=70.45 E-value=1.3 Score=36.19 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.0
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...++-||++|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 446899999999999764
No 119
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=70.01 E-value=0.92 Score=37.71 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=14.1
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++-||++|+|||+.+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 3889999999999876
No 120
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=69.95 E-value=2.1 Score=34.28 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=18.2
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ ++..++||||||.+
T Consensus 54 ~i~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455677876 56678999999976
No 121
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=69.74 E-value=2.1 Score=34.97 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=18.4
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 4555677866 566789999999863
No 122
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=69.33 E-value=1.9 Score=34.78 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=18.3
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||||||.+.
T Consensus 59 ~i~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCcCHHHHHH
Confidence 3455677876 456789999999873
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=68.95 E-value=1.1 Score=35.26 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999876
No 124
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=68.56 E-value=2.3 Score=34.33 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=18.0
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.++..+..|.+ ++..|+||||||..
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQ 92 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHh
Confidence 34555666754 56789999999964
No 125
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=68.45 E-value=2.3 Score=35.85 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=21.1
Q ss_pred ccchhHHHHhcCC-----ceEEEEeccCCCCcceEe
Q psy9445 141 VVNPLIDEVLSGY-----NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 141 ~~~~~v~~~~~G~-----n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++..++.++ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 3445555555542 356788899999998764
No 126
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=68.34 E-value=2 Score=36.48 Aligned_cols=20 Identities=25% Similarity=0.227 Sum_probs=16.3
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
.....|+-||++|+|||+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 34457899999999999765
No 127
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.88 E-value=4.9 Score=36.20 Aligned_cols=76 Identities=26% Similarity=0.319 Sum_probs=45.2
Q ss_pred ecceeecCCCcchhhhccccchhHH-HHhc--C--CceEEEEeccCCCCcceEe--------------ecCCCCCCCCCC
Q psy9445 123 GFDRVFSQESKQVDVYKYVVNPLID-EVLS--G--YNCTVFAYGQTGTGKTFTM--------------EGEKSNDPSISW 183 (243)
Q Consensus 123 ~fD~vF~~~a~q~ev~~~~~~~~v~-~~~~--G--~n~~i~ayG~tgsGKt~Tm--------------~G~~~~~~~~~~ 183 (243)
+||-+-+-+.--.++.+.+..|+.. ..+. | ..-.|+-||+.|+|||... .|..-
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l------- 252 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL------- 252 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG-------
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh-------
Confidence 4555555544444444444444432 2333 3 3457999999999998543 33211
Q ss_pred CCCCCCCchhHHHHHHHHHHHhc
Q psy9445 184 QDDPLSGIVPRAMNHLFDELRLL 206 (243)
Q Consensus 184 ~~~~~~Gii~r~~~~lf~~~~~~ 206 (243)
-+...|--.+.++.+|......
T Consensus 253 -~sk~vGesek~ir~lF~~Ar~~ 274 (437)
T 4b4t_I 253 -IQKYLGDGPRLCRQIFKVAGEN 274 (437)
T ss_dssp -CCSSSSHHHHHHHHHHHHHHHT
T ss_pred -hhccCchHHHHHHHHHHHHHhc
Confidence 1123488899999999988764
No 128
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=67.79 E-value=1.6 Score=37.23 Aligned_cols=17 Identities=35% Similarity=0.798 Sum_probs=14.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+-||++|+|||+..
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46899999999999765
No 129
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=67.62 E-value=1.5 Score=36.49 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.2
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...++-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999765
No 130
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=67.28 E-value=1.1 Score=40.16 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=16.0
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
.-.++-||++|+|||+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3468899999999999873
No 131
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=67.12 E-value=1.4 Score=36.94 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.5
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|....++-||+.|+|||++.
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 454445899999999999775
No 132
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=66.91 E-value=2.4 Score=36.63 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=20.5
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|.+..++..++||||||...
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 455667775556788999999999873
No 133
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.53 E-value=1.4 Score=38.38 Aligned_cols=17 Identities=35% Similarity=0.798 Sum_probs=14.3
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+-||++|+|||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 35888999999998765
No 134
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=66.38 E-value=1.7 Score=40.95 Aligned_cols=27 Identities=33% Similarity=0.292 Sum_probs=18.3
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
|..++.....+ +-.|+.|||||+|+..
T Consensus 198 V~~al~~~~~~-lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 198 VLFALSQKELA-IIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHCSSEE-EEECCTTSCHHHHHHH
T ss_pred HHHHhcCCCce-EEECCCCCCHHHHHHH
Confidence 44555433333 5679999999999753
No 135
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=66.20 E-value=1.6 Score=34.69 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=18.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ ++..++||||||.+
T Consensus 34 ~i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 34 IIPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 3455677766 46789999999986
No 136
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=65.81 E-value=2.5 Score=34.33 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=18.3
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+..++++.+ ++..|+||+|||+....
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~~ 127 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAMA 127 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHHH
Confidence 334555655 66778999999987643
No 137
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=65.46 E-value=2.8 Score=36.36 Aligned_cols=25 Identities=44% Similarity=0.679 Sum_probs=19.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4556677877 667899999999654
No 138
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=64.53 E-value=1.8 Score=39.84 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=15.3
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.+ +...|+||||||.+|
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4665 667899999999876
No 139
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=64.47 E-value=2.3 Score=38.66 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=20.3
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+-.++..++||||||.+
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHH
Confidence 45667777445677899999999986
No 140
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=63.99 E-value=1.4 Score=37.77 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999764
No 141
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=63.87 E-value=2.9 Score=35.66 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=20.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.++.+++|..-.++..++||+|||...
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 455667774455778899999999753
No 142
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.87 E-value=1.9 Score=38.91 Aligned_cols=76 Identities=22% Similarity=0.335 Sum_probs=43.0
Q ss_pred EecceeecCCCcchhhhccccchhHHH-Hhc--CC--ceEEEEeccCCCCcceEe--------------ecCCCCCCCCC
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLIDE-VLS--GY--NCTVFAYGQTGTGKTFTM--------------EGEKSNDPSIS 182 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~~-~~~--G~--n~~i~ayG~tgsGKt~Tm--------------~G~~~~~~~~~ 182 (243)
.+||-|-+.+..-.++-+.+..|+... .+. |. .-.|+-||+.|+|||... -|+.-
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l------ 251 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI------ 251 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT------
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh------
Confidence 345666555444444444444454432 343 32 357999999999998643 22211
Q ss_pred CCCCCCCCchhHHHHHHHHHHHh
Q psy9445 183 WQDDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 183 ~~~~~~~Gii~r~~~~lf~~~~~ 205 (243)
-+...|--.+.++.+|.....
T Consensus 252 --~sk~~Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 252 --VDKYIGESARIIREMFAYAKE 272 (437)
T ss_dssp --CCSSSSHHHHHHHHHHHHHHH
T ss_pred --ccccchHHHHHHHHHHHHHHh
Confidence 112236667777888876654
No 143
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=63.32 E-value=1.6 Score=33.48 Aligned_cols=17 Identities=29% Similarity=0.473 Sum_probs=13.9
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.+...|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 34567999999999876
No 144
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=62.87 E-value=2.1 Score=39.09 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=16.4
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999765
No 145
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=62.68 E-value=2.7 Score=36.72 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.5
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 4556677765 67889999999984
No 146
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.60 E-value=2 Score=37.24 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=18.8
Q ss_pred HHHhcC---CceEEEE--eccCCCCcceEe
Q psy9445 147 DEVLSG---YNCTVFA--YGQTGTGKTFTM 171 (243)
Q Consensus 147 ~~~~~G---~n~~i~a--yG~tgsGKt~Tm 171 (243)
..+..| ....++. ||+.|+|||..+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 444555 4567888 999999999875
No 147
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=62.48 E-value=2.5 Score=33.68 Aligned_cols=29 Identities=28% Similarity=0.395 Sum_probs=21.1
Q ss_pred chhHHHHhcC-C--ceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLSG-Y--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~G-~--n~~i~ayG~tgsGKt~Tm 171 (243)
-+-++.++.| . ...+.-+|++|+|||..+
T Consensus 10 ~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 10 SKELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp CHHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred ChHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 4557777753 3 345677899999999876
No 148
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=62.36 E-value=2.9 Score=37.47 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=19.2
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
++..+++|.+. +++.++||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 45567778664 56789999999986
No 149
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.18 E-value=2.2 Score=38.19 Aligned_cols=77 Identities=23% Similarity=0.287 Sum_probs=46.8
Q ss_pred EecceeecCCCcchhhhccccchhHHH-Hhc--CC--ceEEEEeccCCCCcceEe--------------ecCCCCCCCCC
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLIDE-VLS--GY--NCTVFAYGQTGTGKTFTM--------------EGEKSNDPSIS 182 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~~-~~~--G~--n~~i~ayG~tgsGKt~Tm--------------~G~~~~~~~~~ 182 (243)
-+||-+-+-+.--.++-+.+..|+... ++. |. .-.|+-||+.|+|||... .|..-
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l------ 218 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAEL------ 218 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGG------
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHh------
Confidence 355666665555555555555555432 443 33 356899999999998653 23211
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhc
Q psy9445 183 WQDDPLSGIVPRAMNHLFDELRLL 206 (243)
Q Consensus 183 ~~~~~~~Gii~r~~~~lf~~~~~~ 206 (243)
-....|--.+.++++|......
T Consensus 219 --~sk~vGese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 219 --VQKYIGEGSRMVRELFVMAREH 240 (405)
T ss_dssp --SCSSTTHHHHHHHHHHHHHHHT
T ss_pred --hccccchHHHHHHHHHHHHHHh
Confidence 1122477788899999877653
No 150
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=61.85 E-value=3.2 Score=35.77 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=18.9
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||+|||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 4556677866 667899999999754
No 151
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=61.67 E-value=1.5 Score=39.47 Aligned_cols=17 Identities=29% Similarity=0.700 Sum_probs=14.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56889999999999865
No 152
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=60.90 E-value=4.2 Score=37.11 Aligned_cols=26 Identities=46% Similarity=0.630 Sum_probs=20.2
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..++.|.+-.+++.++||||||..
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566765556778899999999986
No 153
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=60.71 E-value=2.1 Score=39.54 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=17.8
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+++.+..|..-.++ .++||||||.++.
T Consensus 190 ~~~~~~~~~~~~ll-~~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLI-TMATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEE-EECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEE-EecCCCChHHHHH
Confidence 34444456654444 4999999999863
No 154
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=60.29 E-value=2.6 Score=35.74 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=16.5
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45677899999999998764
No 155
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=60.27 E-value=2.4 Score=35.78 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.2
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...++.||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3557888999999998764
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=60.20 E-value=2.9 Score=35.01 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=15.7
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
....++-||++|+|||+..
T Consensus 37 ~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCCEEECCTTCCCHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4467888999999999765
No 157
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=60.14 E-value=4.1 Score=33.94 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=18.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.++.+++|.+ ++..++||+|||.+..
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHHH
Confidence 3455667765 5667999999997653
No 158
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=59.71 E-value=2.9 Score=34.79 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++-+|++|+|||+..
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999765
No 159
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=59.70 E-value=3.7 Score=37.09 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=20.8
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+++.+-.+....++-||++|+|||+...+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 44444345556678899999999988754
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=59.15 E-value=2.2 Score=35.56 Aligned_cols=20 Identities=35% Similarity=0.306 Sum_probs=15.8
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
|....++-||+.|+|||+..
T Consensus 36 ~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHH
Confidence 44344899999999999765
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.09 E-value=2.3 Score=36.22 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=13.8
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999886
No 162
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=59.05 E-value=4.2 Score=35.16 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=18.1
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+..+++|.+ ++..++||||||.+.
T Consensus 46 i~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHccCCC--EEEEcCCCCHHHHHH
Confidence 455677876 467899999999753
No 163
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=58.99 E-value=4.2 Score=36.01 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=18.5
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ +++.++||||||..
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a 109 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHH
Confidence 3455677876 57788999999985
No 164
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=58.84 E-value=3.3 Score=33.16 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=17.3
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+++.+-.|--.+ -.|++|||||+.+
T Consensus 15 ~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHhccCCCEEE--EECCCCCCHHHHH
Confidence 445555565444 4799999999876
No 165
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=58.59 E-value=2.8 Score=31.25 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998754
No 166
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=58.52 E-value=5.1 Score=37.40 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=20.3
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+++.+++|.+ +++..+||+|||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 35667788887 677899999999753
No 167
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=58.17 E-value=3 Score=36.48 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=15.4
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|+-||++|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357899999999999765
No 168
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=58.09 E-value=2.8 Score=36.20 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.0
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999998765
No 169
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=57.89 E-value=2.3 Score=39.89 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=15.4
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
+..++..|++|||||+++.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3467889999999998863
No 170
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=57.64 E-value=2.9 Score=36.28 Aligned_cols=18 Identities=33% Similarity=0.641 Sum_probs=15.0
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...++-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456889999999998764
No 171
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=57.43 E-value=2.7 Score=35.17 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=15.0
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3456777899999999765
No 172
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.72 E-value=3.8 Score=34.09 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=15.9
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.-..++-||+.|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444334889999999999765
No 173
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.45 E-value=2.8 Score=38.14 Aligned_cols=77 Identities=25% Similarity=0.332 Sum_probs=44.2
Q ss_pred EecceeecCCCcchhhhccccchhHH-HHhc--C--CceEEEEeccCCCCcceEe--------------ecCCCCCCCCC
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLID-EVLS--G--YNCTVFAYGQTGTGKTFTM--------------EGEKSNDPSIS 182 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~-~~~~--G--~n~~i~ayG~tgsGKt~Tm--------------~G~~~~~~~~~ 182 (243)
-+||-|-+.+.--.++.+.+..|+.. ..+. | ..-.|+-||+.|+|||... .|..-
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L------ 279 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL------ 279 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG------
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh------
Confidence 34555555444444444444444433 2343 3 3456999999999998643 22211
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhc
Q psy9445 183 WQDDPLSGIVPRAMNHLFDELRLL 206 (243)
Q Consensus 183 ~~~~~~~Gii~r~~~~lf~~~~~~ 206 (243)
-+...|--.+.++.+|......
T Consensus 280 --~sk~vGesek~ir~lF~~Ar~~ 301 (467)
T 4b4t_H 280 --VQKYVGEGARMVRELFEMARTK 301 (467)
T ss_dssp --CCCSSSHHHHHHHHHHHHHHHT
T ss_pred --hcccCCHHHHHHHHHHHHHHhc
Confidence 1122477788899999877653
No 174
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=56.33 E-value=2.3 Score=37.25 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.3
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
|..++..|++|||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 344567899999999876
No 175
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=55.75 E-value=2.7 Score=35.66 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=16.4
Q ss_pred HHhcCCceEEEEeccCCCCcceEe
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.++.|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367788889999999999999766
No 176
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=55.37 E-value=2.5 Score=32.92 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=12.3
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|+|||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999876
No 177
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.37 E-value=2.7 Score=32.66 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=11.8
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 10 i~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 10 FIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 445699999999864
No 178
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=55.26 E-value=2.8 Score=37.58 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=19.4
Q ss_pred HhcCCceEEEEeccCCCCcceEe
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
++.|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57888889989999999999865
No 179
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=55.23 E-value=3.8 Score=30.92 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.1
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|..|||||+..
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 5778899999998743
No 180
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=55.09 E-value=2.4 Score=37.66 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.5
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
+..++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 556788999999999886
No 181
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=54.97 E-value=5.6 Score=33.97 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=18.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..+++|.+ ++..++||+|||...
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4556677766 566789999999764
No 182
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=54.42 E-value=3.9 Score=30.93 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=13.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|.+|||||+..
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999998653
No 183
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.19 E-value=2.3 Score=36.11 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=16.1
Q ss_pred HHhcCCceEEEEeccCCCCcceEe
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..|. .++-||++|+|||+.+
T Consensus 42 ~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTC--CEEEESCCCHHHHHHH
T ss_pred HHHcCC--eEEEECCCCCcHHHHH
Confidence 344443 5788999999999654
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=54.13 E-value=2.9 Score=32.19 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999865
No 185
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=54.02 E-value=2.7 Score=32.53 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|+|||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999875
No 186
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=53.55 E-value=3 Score=33.00 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|++|+|||..+
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999875
No 187
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=53.52 E-value=6.6 Score=36.16 Aligned_cols=26 Identities=46% Similarity=0.630 Sum_probs=19.7
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..++.|..--+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 45566755555678899999999985
No 188
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=53.21 E-value=5.9 Score=35.65 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=18.8
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|.+ ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4556677776 567889999999774
No 189
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=52.95 E-value=4.3 Score=30.98 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.1
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999998654
No 190
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=52.92 E-value=2.2 Score=41.59 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=21.6
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
..+++.+..+....++-||++|+|||+.+.+
T Consensus 180 ~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 180 RRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 3344444455555678899999999987754
No 191
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=52.89 E-value=3.8 Score=36.77 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=22.3
Q ss_pred CcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 132 SKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 132 a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..|.+.+.. ++..+.++. ..++..|..|||||+++
T Consensus 28 ~~Q~~av~~----~~~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 28 EGQKNAFNI----VMKAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp HHHHHHHHH----HHHHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHH----HHHHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 456555443 233333333 37888999999999876
No 192
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.75 E-value=5.2 Score=32.63 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=13.5
Q ss_pred eEEEEeccCCCCcceE
Q psy9445 155 CTVFAYGQTGTGKTFT 170 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~T 170 (243)
..|+..|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678889999999865
No 193
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=52.71 E-value=3.6 Score=38.26 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=16.6
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
+..++..|..|||||+|+.-
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ 41 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVH 41 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHH
Confidence 45678899999999999853
No 194
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=52.70 E-value=2.9 Score=34.31 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.4
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5688999999999999754
No 195
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=52.48 E-value=3 Score=32.83 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=12.3
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|+|||..+
T Consensus 7 i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLL 21 (198)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 196
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=52.44 E-value=4.1 Score=31.06 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.4
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999998765
No 197
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=52.22 E-value=4.2 Score=39.56 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=42.4
Q ss_pred EecceeecCCCcchhhhccccchhHH-HHhcCCc----eEEEEeccCCCCcceEeecCCCCC-CCCCC-----CCCCCCC
Q psy9445 122 FGFDRVFSQESKQVDVYKYVVNPLID-EVLSGYN----CTVFAYGQTGTGKTFTMEGEKSND-PSISW-----QDDPLSG 190 (243)
Q Consensus 122 f~fD~vF~~~a~q~ev~~~~~~~~v~-~~~~G~n----~~i~ayG~tgsGKt~Tm~G~~~~~-~~~~~-----~~~~~~G 190 (243)
-+|+-+-+.+..-.++.+.+..|+.. .++.++. ..|+-||+.|+|||...---...- ..... -.+...|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 45555555544444444433334433 2455433 469999999999985432110000 00000 0011236
Q ss_pred chhHHHHHHHHHHHh
Q psy9445 191 IVPRAMNHLFDELRL 205 (243)
Q Consensus 191 ii~r~~~~lf~~~~~ 205 (243)
-....++.+|+....
T Consensus 281 ese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 281 ESESNLRKAFEEAEK 295 (806)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 667778888877654
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=51.61 E-value=3.8 Score=34.90 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|++|||||.++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4555699999999876
No 199
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.46 E-value=3.4 Score=35.17 Aligned_cols=16 Identities=31% Similarity=0.590 Sum_probs=13.3
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|++|+|||.++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4556799999999887
No 200
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=51.22 E-value=4.3 Score=38.06 Aligned_cols=17 Identities=41% Similarity=0.517 Sum_probs=14.2
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
..+..|+.|||||+|+.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 45678999999999964
No 201
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=51.18 E-value=2.7 Score=34.25 Aligned_cols=19 Identities=26% Similarity=0.195 Sum_probs=15.4
Q ss_pred eEEEEeccCCCCcceEeec
Q psy9445 155 CTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~G 173 (243)
..++-+|..|+|||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4567789999999987765
No 202
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=51.14 E-value=3.5 Score=32.97 Aligned_cols=17 Identities=53% Similarity=0.573 Sum_probs=13.6
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.+.-.|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 44558999999998774
No 203
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.85 E-value=6.6 Score=37.56 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=21.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
+++.+..+....++-||++|+|||....+
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 44444445556688999999999987654
No 204
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=50.84 E-value=5.1 Score=35.60 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=17.6
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
++.++++.+ ++..++||+|||.+..
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 344555544 6678999999998763
No 205
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=50.57 E-value=4.9 Score=38.46 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=18.5
Q ss_pred cCCceEEEEeccCCCCcceE
Q psy9445 151 SGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~T 170 (243)
++.|.||+.-|.+|+|||.+
T Consensus 91 ~~~nQsIiisGESGAGKTe~ 110 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEA 110 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEecCCCCCCchhh
Confidence 58999999999999999966
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=50.33 E-value=3.7 Score=31.61 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|++|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3556799999998864
No 207
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=50.33 E-value=4.9 Score=30.77 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..+...|.+|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34667899999999875
No 208
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=50.28 E-value=3.7 Score=32.35 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=11.8
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 23 ~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 23 VVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334699999999865
No 209
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=50.19 E-value=4.9 Score=31.48 Aligned_cols=18 Identities=22% Similarity=0.130 Sum_probs=14.1
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|...|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345667799999998864
No 210
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=50.17 E-value=2.8 Score=32.73 Aligned_cols=18 Identities=22% Similarity=0.183 Sum_probs=14.8
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
.++-+|..|+|||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 456789999999998754
No 211
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=50.16 E-value=7 Score=36.58 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=18.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.| ++..++||+|||..
T Consensus 21 ~i~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 21 LALPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCchHHHH
Confidence 3455677876 56788999999984
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=49.67 E-value=3.9 Score=39.12 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=34.9
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeecCCC------CC------------CCCCCCCCCCCCchhHHHHHHHHHHHh
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKS------ND------------PSISWQDDPLSGIVPRAMNHLFDELRL 205 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~------~~------------~~~~~~~~~~~Gii~r~~~~lf~~~~~ 205 (243)
+++.+.......++-||++|+|||+.+.+-.. .+ ...........|-+...++.+|+.+..
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~ 276 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ 276 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHh
Confidence 44444445556678899999999987644110 00 000000123457777778888877754
No 213
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=49.59 E-value=3.8 Score=34.99 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.2
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...++-||+.|+|||..+
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346789999999999876
No 214
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.48 E-value=4.1 Score=37.20 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57889999999999865
No 215
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=49.28 E-value=4.8 Score=30.24 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.1
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4667899999998764
No 216
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=49.19 E-value=3.9 Score=32.12 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=18.2
Q ss_pred hhHHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++. |. ...+.-+|++|+|||..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34555554 33 234556899999999775
No 217
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=49.18 E-value=7.5 Score=34.84 Aligned_cols=25 Identities=36% Similarity=0.423 Sum_probs=18.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|.+ ++..++||+|||.+.
T Consensus 12 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCChHHHHH
Confidence 3455677876 566799999999773
No 218
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=48.89 E-value=4.9 Score=30.55 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.6
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 5 ~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 5 VVVVTGVPGVGSTTS 19 (192)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477789999999865
No 219
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=48.64 E-value=8.9 Score=29.82 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=20.4
Q ss_pred hhHHHHhc-CCc--eEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLS-GYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~-G~n--~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++. |.. ..+..+|.+|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 45666775 543 46778999999999765
No 220
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=48.63 E-value=5.5 Score=38.57 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.8
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
++.|.||+.-|.+|+|||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 589999999999999999653
No 221
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=48.60 E-value=4.8 Score=32.15 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=8.2
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 30 i~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEECSCC----CHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999875
No 222
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=48.54 E-value=9 Score=30.34 Aligned_cols=28 Identities=43% Similarity=0.628 Sum_probs=19.4
Q ss_pred hhHHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++. |. ...+.-+|++|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 34566654 33 345677899999999884
No 223
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=48.46 E-value=5.1 Score=33.10 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=17.3
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+..++.+.++ +..++||+|||.+..
T Consensus 122 i~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 4445555444 348999999998864
No 224
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=48.25 E-value=4.1 Score=34.52 Aligned_cols=17 Identities=41% Similarity=0.727 Sum_probs=13.6
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.+...|++|+|||+++.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999874
No 225
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.24 E-value=4.3 Score=34.69 Aligned_cols=24 Identities=46% Similarity=0.577 Sum_probs=18.2
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..++.|.+ ++..++||+|||.+
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHH
Confidence 4555677766 56779999999976
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=48.13 E-value=5.6 Score=30.99 Aligned_cols=16 Identities=38% Similarity=0.492 Sum_probs=13.3
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999998764
No 227
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=48.10 E-value=5.6 Score=38.60 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=18.2
Q ss_pred cCCceEEEEeccCCCCcceE
Q psy9445 151 SGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~T 170 (243)
.+.|.||+.-|.+|+|||.+
T Consensus 137 ~~~nQsIiiSGESGAGKTe~ 156 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTEN 156 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCceeh
Confidence 58999999999999999955
No 228
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=47.65 E-value=5.3 Score=32.77 Aligned_cols=15 Identities=40% Similarity=0.474 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|.+|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 366789999999864
No 229
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=47.58 E-value=3.9 Score=32.22 Aligned_cols=15 Identities=47% Similarity=0.705 Sum_probs=12.6
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|+|||.++
T Consensus 4 i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLI 18 (189)
T ss_dssp EEEESCCSSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 456799999999876
No 230
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=47.33 E-value=7.4 Score=36.45 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=19.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.++.+++|.+ ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 4555677766 567899999999765
No 231
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=47.32 E-value=7.9 Score=32.50 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=17.7
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+..+++|. ..++..++||||||.+.
T Consensus 37 i~~~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTC-SEEEEECCSSSSHHHHH
T ss_pred HHHHhCCC-CCEEEECCCCChHHHHH
Confidence 44556663 23567899999999874
No 232
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=47.19 E-value=4 Score=37.38 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=14.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999998765
No 233
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=47.12 E-value=4.4 Score=31.91 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=19.6
Q ss_pred hhHHHHhc-CCc--eEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLS-GYN--CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~-G~n--~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++. |.. -.+.-.|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45666674 432 34666799999999875
No 234
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=46.69 E-value=5.7 Score=29.60 Aligned_cols=16 Identities=13% Similarity=-0.010 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999998754
No 235
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=46.68 E-value=6 Score=38.69 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.5
Q ss_pred cCCceEEEEeccCCCCcceE
Q psy9445 151 SGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~T 170 (243)
++.|.||+.-|.+|+|||.+
T Consensus 166 ~~~nQsIiiSGESGAGKTe~ 185 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTEN 185 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEeCCCCCCchhh
Confidence 58999999999999999976
No 236
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=46.55 E-value=8.7 Score=29.85 Aligned_cols=17 Identities=29% Similarity=0.769 Sum_probs=13.2
Q ss_pred ceEEEEeccCCCCcceE
Q psy9445 154 NCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~T 170 (243)
...|...|.+|||||..
T Consensus 25 g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34566679999999865
No 237
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=46.34 E-value=5.3 Score=34.73 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=18.5
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+..++.| .++..++||+|||.+..-
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~~ 42 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAMM 42 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHHH
Confidence 34455666 456679999999987643
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=46.27 E-value=5.2 Score=31.48 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=13.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.|--.|++|||||+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLS 39 (208)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34555799999999765
No 239
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=46.26 E-value=5.7 Score=30.30 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999998753
No 240
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=46.00 E-value=6.3 Score=38.30 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=18.3
Q ss_pred cCCceEEEEeccCCCCcceE
Q psy9445 151 SGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~T 170 (243)
++.|.||+.-|.+|+|||.+
T Consensus 153 ~~~nQsIiisGESGAGKTe~ 172 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVS 172 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 48999999999999999965
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=45.99 E-value=5.7 Score=36.39 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=17.3
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+..+..|. .|+-||++|+|||+..
T Consensus 35 ~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 35 LLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHhcCC--eeEeecCchHHHHHHH
Confidence 33445554 5778999999998754
No 242
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=45.82 E-value=4.1 Score=35.05 Aligned_cols=19 Identities=47% Similarity=0.656 Sum_probs=14.4
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.+ +...|++|||||.++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4654 445799999999876
No 243
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=45.68 E-value=4.7 Score=34.73 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=13.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..+...|++|+|||.++
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45556799999999875
No 244
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=45.68 E-value=6.4 Score=38.17 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.9
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|+|||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 589999999999999999753
No 245
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=45.66 E-value=4.1 Score=35.44 Aligned_cols=20 Identities=35% Similarity=0.340 Sum_probs=14.5
Q ss_pred hcCCceEEEEeccCCCCcceEe
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
-.|.... --|+||||||.++
T Consensus 173 ~~G~~i~--ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIV--VAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEE--EEESSSSCHHHHH
T ss_pred hcCCEEE--EECCCCCCHHHHH
Confidence 3465443 4599999999876
No 246
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=45.65 E-value=6.3 Score=39.36 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.5
Q ss_pred cCCceEEEEeccCCCCcceE
Q psy9445 151 SGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~T 170 (243)
++.|.||+.-|.+|+|||.+
T Consensus 169 ~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHH
T ss_pred cCCCeEEEEeCCCCCCcchH
Confidence 58999999999999999966
No 247
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=45.58 E-value=5.9 Score=30.97 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999998753
No 248
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.39 E-value=4.8 Score=35.24 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..+.-.|++|+|||.++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 34566799999999887
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=45.02 E-value=4.6 Score=32.27 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.2
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|+|||..+
T Consensus 27 ~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 27 VICGPSGVGKGTLI 40 (218)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999764
No 250
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=44.80 E-value=3.9 Score=32.35 Aligned_cols=18 Identities=17% Similarity=0.113 Sum_probs=14.9
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
-.+-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 466789999999988765
No 251
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=44.77 E-value=6.7 Score=39.08 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.5
Q ss_pred cCCceEEEEeccCCCCcceE
Q psy9445 151 SGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~T 170 (243)
++.|.||+.-|.+|+|||.+
T Consensus 143 ~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHH
T ss_pred cCCCcEEEecCCCCCCchhh
Confidence 58999999999999999965
No 252
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=44.73 E-value=6.8 Score=30.25 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999998764
No 253
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=44.55 E-value=8.6 Score=36.76 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=14.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999998764
No 254
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=44.52 E-value=5.5 Score=37.50 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.9
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
+..++..|..|||||+++..
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHHH
Confidence 56678889999999999863
No 255
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=44.12 E-value=8.5 Score=31.69 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=17.2
Q ss_pred hcCCceEEEEeccCCCCcceEe
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
-.|+...|...|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3588889999999999998765
No 256
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=43.87 E-value=9.1 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=19.3
Q ss_pred hHHHHhc-CCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLS-GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~-G~n~~i~ayG~tgsGKt~Tm 171 (243)
+.+.++. .....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444454 45667888999999998755
No 257
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=43.79 E-value=6.7 Score=29.84 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477789999999875
No 258
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.67 E-value=6.9 Score=39.68 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=18.8
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|+|||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 589999999999999999653
No 259
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=43.67 E-value=6.7 Score=29.83 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999998753
No 260
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=43.39 E-value=6.8 Score=29.31 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3677899999998753
No 261
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=43.33 E-value=8.8 Score=29.46 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=14.9
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+..-.|.-.|..|||||+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 33456777899999998753
No 262
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=43.31 E-value=6.9 Score=30.07 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999875
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=43.22 E-value=5.5 Score=33.97 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=14.3
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..|...|++|+|||.|+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 356677999999998873
No 264
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=43.21 E-value=7.3 Score=39.06 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.9
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+.|.||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 589999999999999999664
No 265
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=43.03 E-value=6.8 Score=29.72 Aligned_cols=15 Identities=27% Similarity=0.353 Sum_probs=12.1
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999854
No 266
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=42.95 E-value=7.6 Score=29.26 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.-.|..|||||...
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4667899999998764
No 267
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=42.85 E-value=6.9 Score=37.98 Aligned_cols=17 Identities=41% Similarity=0.517 Sum_probs=14.2
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.++..|+.|||||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 45679999999999864
No 268
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=42.82 E-value=11 Score=28.87 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=20.4
Q ss_pred chhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.++.+.++.-....|...|.+|+|||.-+
T Consensus 18 ~~~~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 18 GSLFSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp CCGGGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccEEEEECCCCCCHHHHH
Confidence 33444555555667888999999998654
No 269
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=42.79 E-value=7.4 Score=29.42 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=9.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|..|||||+..
T Consensus 7 ~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 7 IIWINGPFGVGKTHTA 22 (183)
T ss_dssp EEEEECCC----CHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998643
No 270
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=42.73 E-value=5.7 Score=30.27 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|+.|+|||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999865
No 271
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.63 E-value=7.5 Score=39.10 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=18.4
Q ss_pred cCCceEEEEeccCCCCcceE
Q psy9445 151 SGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~T 170 (243)
++.|.||+.-|.+|+|||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 58999999999999999965
No 272
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=42.61 E-value=8.6 Score=29.16 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4457899999999764
No 273
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=42.35 E-value=7 Score=35.56 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.4
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999998764
No 274
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=42.24 E-value=7.7 Score=37.55 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=17.6
Q ss_pred HHhcCCceEEEEeccCCCCcceEe
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+-.+....++..|+||||||...
T Consensus 383 ~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 383 DMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hccccCCCcEEEEcCCCCCHHHHH
Confidence 334455456788999999999765
No 275
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=42.20 E-value=7.2 Score=29.48 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=12.3
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 366789999999875
No 276
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=42.19 E-value=9.3 Score=33.88 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.6
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999874
No 277
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=42.04 E-value=10 Score=28.38 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
..-+|++|||||..+
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 346899999998754
No 278
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=41.98 E-value=7.4 Score=30.90 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=13.5
Q ss_pred EEEeccCCCCcceEeec
Q psy9445 157 VFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~G 173 (243)
.+-.|..|||||+.+.-
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 45789999999997543
No 279
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=41.78 E-value=12 Score=37.26 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=18.0
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..+++|.+ ++..++||||||..
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 3556677754 77899999999953
No 280
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=41.58 E-value=8.5 Score=29.41 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=13.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|..|||||+..
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45667899999998643
No 281
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=41.13 E-value=7.8 Score=29.47 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367789999999875
No 282
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=41.00 E-value=9.2 Score=36.16 Aligned_cols=41 Identities=34% Similarity=0.376 Sum_probs=28.1
Q ss_pred ecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeec
Q psy9445 128 FSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 128 F~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G 173 (243)
|.+...|..-++. +++.+-.|... ....|.||||||++|..
T Consensus 7 ~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 7 PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 4677777666544 45565666532 34579999999999964
No 283
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=40.94 E-value=7.8 Score=30.08 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-.|..|||||+..
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999754
No 284
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=40.69 E-value=12 Score=35.74 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=14.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++-||++|+|||+..
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57899999999998754
No 285
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=40.57 E-value=6.2 Score=36.73 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=18.2
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+..++.+ ..++..|..|||||+++.
T Consensus 197 Av~~~~~~--~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 197 VLDQLAGH--RLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp HHHHHTTC--SEEEEECCTTSCHHHHHH
T ss_pred HHHHHHhC--CEEEEEcCCCCCHHHHHH
Confidence 34444443 456678999999998874
No 286
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=40.44 E-value=6.4 Score=36.28 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=14.5
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...++-+|++|+|||+.+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788999999999764
No 287
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.38 E-value=10 Score=36.82 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=14.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 58999999999998764
No 288
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=40.01 E-value=8.2 Score=28.74 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=12.3
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 366789999999865
No 289
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=39.90 E-value=6.6 Score=31.88 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=11.8
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 34 ~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 34 VSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 345699999999765
No 290
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=39.60 E-value=8.1 Score=36.77 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=15.9
Q ss_pred HHhcCCceEEEEeccCCCCcceE
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
..++|. .++..|+||||||+.
T Consensus 151 r~l~rk--~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 151 RAMQRK--IIFHSGPTNSGKTYH 171 (677)
T ss_dssp HTSCCE--EEEEECCTTSSHHHH
T ss_pred HhcCCC--EEEEEcCCCCCHHHH
Confidence 345554 577899999999984
No 291
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=39.59 E-value=8.4 Score=29.49 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999998753
No 292
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=39.45 E-value=7.2 Score=33.89 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=20.6
Q ss_pred HHhcCCceEEEEeccCCCCcceEe
Q psy9445 148 EVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 148 ~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 357799999999999999999765
No 293
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=39.35 E-value=7 Score=32.71 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999765
No 294
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=39.31 E-value=6.3 Score=36.79 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=14.9
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
.-++..|.||||||..+.
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 567889999999988753
No 295
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=39.30 E-value=6.8 Score=32.83 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++.+|+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 47889999999999765
No 296
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=39.28 E-value=9.6 Score=29.92 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
++.+|.+|||||.-
T Consensus 2 ilV~Gg~~SGKS~~ 15 (180)
T 1c9k_A 2 ILVTGGARSGKSRH 15 (180)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCcHHHH
Confidence 67899999999754
No 297
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=39.22 E-value=11 Score=37.59 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=17.9
Q ss_pred hHHHHhcCCceEEEEeccCCCCcce
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTF 169 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~ 169 (243)
.+..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 4556778865 5678999999994
No 298
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=38.93 E-value=7 Score=31.45 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999998764
No 299
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.92 E-value=8.8 Score=30.57 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=11.0
Q ss_pred EEEeccCCCCcce
Q psy9445 157 VFAYGQTGTGKTF 169 (243)
Q Consensus 157 i~ayG~tgsGKt~ 169 (243)
|+-.|+.||||++
T Consensus 3 Iil~GpPGsGKgT 15 (206)
T 3sr0_A 3 LVFLGPPGAGKGT 15 (206)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6778999999964
No 300
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.63 E-value=9 Score=30.90 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=11.8
Q ss_pred EEEEeccCCCCcce
Q psy9445 156 TVFAYGQTGTGKTF 169 (243)
Q Consensus 156 ~i~ayG~tgsGKt~ 169 (243)
.||..|+.||||++
T Consensus 31 iI~llGpPGsGKgT 44 (217)
T 3umf_A 31 VIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEECCTTCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47788999999964
No 301
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=38.47 E-value=9 Score=29.02 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=12.4
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+-.|..|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999875
No 302
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=38.41 E-value=8.9 Score=30.43 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|..|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999998753
No 303
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=38.39 E-value=7.2 Score=35.80 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=13.3
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+...|.+|+|||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4556799999999877
No 304
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=38.20 E-value=9.8 Score=30.62 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.|.-.|.+|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677899999999865
No 305
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=37.91 E-value=11 Score=33.74 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 466789999999987
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=37.83 E-value=9.4 Score=29.52 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+..|..|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999998753
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=37.83 E-value=9.3 Score=30.10 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 6 ~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999864
No 308
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=37.80 E-value=7.4 Score=30.32 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=11.7
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|--.|.+|||||+.+
T Consensus 9 i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 9 IGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998765
No 309
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=37.75 E-value=6.9 Score=38.02 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=14.8
Q ss_pred EEEEeccCCCCcceEeec
Q psy9445 156 TVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G 173 (243)
..+..|+.|||||+|+..
T Consensus 373 ~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 456799999999999753
No 310
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=37.72 E-value=11 Score=33.50 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=15.3
Q ss_pred hcCCceEEEEeccCCCCcceEe
Q psy9445 150 LSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 150 ~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
++|.+ ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 45554 567899999999874
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=37.66 E-value=10 Score=29.45 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=12.0
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|...|.+|||||..
T Consensus 31 ~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 31 HVVVMGVSGSGKTTI 45 (200)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 455679999999875
No 312
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=37.61 E-value=9.5 Score=29.82 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|+..|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998753
No 313
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=37.56 E-value=14 Score=35.43 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=19.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.+..++.|.+ ++..++||+|||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 4556678876 567899999999764
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=37.53 E-value=9.4 Score=29.10 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999998743
No 315
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=37.36 E-value=9.5 Score=31.21 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.6
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+..|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35778899999998753
No 316
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=36.96 E-value=11 Score=30.43 Aligned_cols=18 Identities=39% Similarity=0.626 Sum_probs=13.9
Q ss_pred CceEEEEeccCCCCcceE
Q psy9445 153 YNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~T 170 (243)
+...|+-.|+||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345678889999999743
No 317
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=36.73 E-value=9.7 Score=34.33 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.2
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+.||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45889999999998754
No 318
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=36.55 E-value=7.9 Score=35.36 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=19.1
Q ss_pred hhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..++.+++|.+ ++..++||+|||...
T Consensus 32 ~~i~~il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCcHHHHHH
Confidence 35666778876 455689999999744
No 319
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=35.99 E-value=10 Score=29.62 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998753
No 320
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=35.94 E-value=7.7 Score=29.44 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=15.3
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
....|...|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3457889999999998755
No 321
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=35.94 E-value=20 Score=30.74 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=22.2
Q ss_pred chhHHHHhc-CC--ceEEEEeccCCCCcceEee
Q psy9445 143 NPLIDEVLS-GY--NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 143 ~~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm~ 172 (243)
-+-++.++. |+ ...+.-||.+|+|||..+.
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 455778886 44 3457789999999997753
No 322
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=35.75 E-value=18 Score=30.46 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=22.4
Q ss_pred cchhHHHHhc-CC--ceEEEEeccCCCCcceEee
Q psy9445 142 VNPLIDEVLS-GY--NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 142 ~~~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm~ 172 (243)
.-+-++.++. |+ ...+..||.+|+|||..+.
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 3456777775 43 3567889999999987653
No 323
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=35.65 E-value=11 Score=29.24 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=12.2
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|.-.|..|||||+..
T Consensus 4 i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 4 IGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 566899999998753
No 324
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=35.64 E-value=11 Score=31.87 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=19.1
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+-..+-.|..-.++-||+.|+|||.+.
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 333444566557888999999998655
No 325
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=35.64 E-value=11 Score=30.20 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.1
Q ss_pred eEEEEeccCCCCcceE
Q psy9445 155 CTVFAYGQTGTGKTFT 170 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~T 170 (243)
..|+..|..|||||+.
T Consensus 17 ~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577899999999864
No 326
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=35.54 E-value=8.6 Score=29.81 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=12.5
Q ss_pred EEEeccCCCCcceEee
Q psy9445 157 VFAYGQTGTGKTFTME 172 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm~ 172 (243)
+.-.|.+|||||..+.
T Consensus 7 i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLME 22 (169)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556899999988764
No 327
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=35.53 E-value=7.9 Score=35.60 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++..|.||||||..+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45678999999999753
No 328
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=35.36 E-value=12 Score=32.54 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=12.6
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+-.|+||||||..
T Consensus 42 lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 42 LLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 577889999999863
No 329
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=35.18 E-value=9.1 Score=36.50 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=16.9
Q ss_pred CceEEEEeccCCCCcceEeec
Q psy9445 153 YNCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+..++..|..|||||+++..
T Consensus 23 ~~g~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 23 TEGPLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp CSSCEEEEECTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHH
Confidence 345677889999999999854
No 330
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=35.03 E-value=8.6 Score=30.89 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.3
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 34 ~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 34 SIIGASGSGKSTLL 47 (224)
T ss_dssp EEEECTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999765
No 331
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=35.03 E-value=8.8 Score=32.85 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=13.3
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.|...|++|+|||+|+.
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999998873
No 332
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=34.95 E-value=10 Score=35.92 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.++..|+||||||...
T Consensus 40 ~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 40 KNALISIPTASGKTLIA 56 (720)
T ss_dssp CEEEEECCGGGCHHHHH
T ss_pred CcEEEEcCCccHHHHHH
Confidence 34778999999999654
No 333
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=34.88 E-value=12 Score=27.89 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.4
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+-.|..|||||..
T Consensus 9 ~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSL 23 (168)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 567789999999864
No 334
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=34.76 E-value=2e+02 Score=24.00 Aligned_cols=89 Identities=18% Similarity=0.271 Sum_probs=53.8
Q ss_pred cceEEecceeecCC-CcchhhhccccchhHHHHhc-CCceEEEEeccCCCCcceEeecCCCCCCCCCCCCCCCCCchhHH
Q psy9445 118 ISKTFGFDRVFSQE-SKQVDVYKYVVNPLIDEVLS-GYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 195 (243)
Q Consensus 118 ~~~~f~fD~vF~~~-a~q~ev~~~~~~~~v~~~~~-G~n~~i~ayG~tgsGKt~Tm~G~~~~~~~~~~~~~~~~Gii~r~ 195 (243)
..++|.|+++-... .+..+++..-.+...+.++. +.|+++|..++.- +. -+.-..
T Consensus 44 ~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~DmCL~k~~NfnlISiS~~~------------~~-----------~lr~~l 100 (275)
T 4gkp_A 44 NHKTYKFTKLIQNFSHQNKDLFKEDLHVYIDFCLKRRENFNLFSVGSSN------------IP-----------NTFEKL 100 (275)
T ss_dssp TTEEEECSEEEEECSSSCCCGGGTHHHHHHHHHHHTTCCEEEEEECCSS------------CC-----------SHHHHH
T ss_pred CccEEEEEeeeccccCCHHHHHHHHHHHHHHHHhccCCCceEEEecCCC------------cH-----------HHHHHH
Confidence 35799999998553 34445555556778887775 8899998877533 11 233333
Q ss_pred HHHHHHHHHhcCCceEEEEEEEEEEECCe-EEeCCCCCC
Q psy9445 196 MNHLFDELRLLGDAEFTVRVSFLEIYNEE-LIDLLSPTD 233 (243)
Q Consensus 196 ~~~lf~~~~~~~~~~~~v~~S~~eiyne~-v~DLL~~~~ 233 (243)
+ +.+...-...|.+.+.++-+-.+. =.|||....
T Consensus 101 l----~f~~~~y~~~y~itlQ~V~Ls~~~~S~Dll~~~~ 135 (275)
T 4gkp_A 101 L----AFFKNNYFDKFVITLQYVMLSDNADSQDLLSNNK 135 (275)
T ss_dssp H----HHHHHHTTTTEEEEEEEEEEC----CEETTCC--
T ss_pred H----HHHHHhccccceEEEEEEEecCCCcccccccCCc
Confidence 3 334444555678888777765444 479885544
No 335
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=34.73 E-value=11 Score=29.69 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.3
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||..
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 7 KVMISGAPASGKGTQ 21 (222)
T ss_dssp CEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999864
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=34.64 E-value=14 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=14.6
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
....|+..|..|||||+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3446788899999998753
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=34.35 E-value=11 Score=28.93 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|..|||||+..
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4677899999998764
No 338
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=34.25 E-value=11 Score=28.73 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.5
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|.--|..|||||+.
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 55679999999864
No 339
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=34.10 E-value=14 Score=31.87 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+-.|+||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999864
No 340
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=33.94 E-value=22 Score=30.60 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=20.6
Q ss_pred chhHHHHhcC-C--ceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLSG-Y--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~G-~--n~~i~ayG~tgsGKt~Tm 171 (243)
.+-++.++.| + ...+.-+|++|||||..+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556777754 2 345677899999998764
No 341
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=33.83 E-value=11 Score=32.11 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=18.3
Q ss_pred HHHHhcCC-ceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGY-NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~-n~~i~ayG~tgsGKt~Tm 171 (243)
...+-.|. .-.++-||+.|+|||.+.
T Consensus 15 ~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 15 VASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHcCCcceeEEEECCCCchHHHHH
Confidence 33444454 446889999999998764
No 342
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=33.75 E-value=12 Score=28.38 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|.-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999998653
No 343
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=33.69 E-value=14 Score=34.87 Aligned_cols=91 Identities=22% Similarity=0.368 Sum_probs=52.2
Q ss_pred EEecceeecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEeecCCC--CCCCCCCCCCCCCCchhHHHHH
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKS--NDPSISWQDDPLSGIVPRAMNH 198 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm~G~~~--~~~~~~~~~~~~~Gii~r~~~~ 198 (243)
.|..-.-|.|...|..-++. +++.+-.|... ....|.||||||++|-.--. ..+..-... =...+.+
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~------~~~~A~~ 72 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAH------NKTLAGQ 72 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECS------SHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEEC------CHHHHHH
Confidence 35555668888888877654 45566666432 34569999999999964211 010000000 0234566
Q ss_pred HHHHHHhc-CCceEEEEEEEEEEEC
Q psy9445 199 LFDELRLL-GDAEFTVRVSFLEIYN 222 (243)
Q Consensus 199 lf~~~~~~-~~~~~~v~~S~~eiyn 222 (243)
|++.+... ++..+....||+--|.
T Consensus 73 l~~el~~~~~~~~v~~fps~yd~~~ 97 (661)
T 2d7d_A 73 LYSEFKEFFPNNAVEYFVSYYDYYQ 97 (661)
T ss_dssp HHHHHHHHCTTSEEEEECCCEEEEE
T ss_pred HHHHHHHHcCCCcEEEccccccccC
Confidence 77777663 4445666777655543
No 344
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=33.59 E-value=9.6 Score=31.09 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=11.8
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 27 ~~liG~nGsGKSTLl 41 (240)
T 2onk_A 27 CVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999998755
No 345
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=33.51 E-value=14 Score=31.98 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=13.9
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..++-||++|+|||+...
T Consensus 124 sviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp EEEEEECSCSSSHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHH
Confidence 345789999999996543
No 346
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=33.33 E-value=13 Score=31.91 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|+||||||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 467789999999853
No 347
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=33.29 E-value=14 Score=26.68 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999998765
No 348
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=32.87 E-value=17 Score=36.59 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..++.|.+ +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 4556677865 57889999999983
No 349
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=32.83 E-value=12 Score=29.23 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=11.6
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+..|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 3 IILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999864
No 350
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=32.79 E-value=21 Score=30.16 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=21.3
Q ss_pred chhHHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
-+-++.++. |+ ...+.-||.+|+|||..+
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred chhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 456777885 43 345788999999998765
No 351
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=32.79 E-value=17 Score=36.28 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=17.3
Q ss_pred HHHHhcCCceEEEEeccCCCCcceE
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
+..++.|.+ ++..++||||||..
T Consensus 95 i~~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 95 ISCIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHHHHTCE--EEEECCTTSCHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHH
Confidence 344566765 77889999999975
No 352
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=32.75 E-value=10 Score=31.18 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 37 ~liG~nGsGKSTLl 50 (257)
T 1g6h_A 37 LIIGPNGSGKSTLI 50 (257)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999875
No 353
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=32.73 E-value=10 Score=32.33 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=12.6
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|--.|++|||||+.+
T Consensus 92 ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 4445699999999876
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=32.61 E-value=9.4 Score=30.62 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=11.1
Q ss_pred EeccCCCCcceEe
Q psy9445 159 AYGQTGTGKTFTM 171 (243)
Q Consensus 159 ayG~tgsGKt~Tm 171 (243)
-.|++|||||..+
T Consensus 40 iiG~NGsGKSTLl 52 (214)
T 1sgw_A 40 FHGPNGIGKTTLL 52 (214)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4699999999876
No 355
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=32.58 E-value=19 Score=35.44 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=19.6
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
.+..++.|.+ ++..++||+|||.+..
T Consensus 256 ai~~il~g~~--~ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 256 LAQPAINGKN--ALICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCchHHHHHH
Confidence 4556678876 5668899999998743
No 356
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=32.53 E-value=14 Score=33.01 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=17.8
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEee
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm~ 172 (243)
++.++.|.+ ++..|+||+|||.+..
T Consensus 122 i~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 122 VFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 444555544 4678999999998864
No 357
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=32.41 E-value=10 Score=30.78 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 36 ~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 36 TLIGANGAGKTTTL 49 (240)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999876
No 358
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.36 E-value=14 Score=28.94 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=12.6
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.--|.+|||||+..
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999998754
No 359
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=32.35 E-value=14 Score=30.41 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..+.-+|++|+|||..+
T Consensus 31 ~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLA 47 (279)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35667899999999865
No 360
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=32.32 E-value=14 Score=28.59 Aligned_cols=15 Identities=40% Similarity=0.379 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|.-.|..|||||+..
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999998764
No 361
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=32.28 E-value=15 Score=26.59 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999765
No 362
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=32.21 E-value=10 Score=30.71 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 34 ~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999998764
No 363
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=32.17 E-value=11 Score=33.81 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=13.6
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|+..|.+|+|||+|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44556699999999985
No 364
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=32.17 E-value=10 Score=31.63 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=11.1
Q ss_pred EeccCCCCcceEe
Q psy9445 159 AYGQTGTGKTFTM 171 (243)
Q Consensus 159 ayG~tgsGKt~Tm 171 (243)
-.|++|||||..+
T Consensus 39 iiGpnGsGKSTLl 51 (275)
T 3gfo_A 39 ILGGNGVGKSTLF 51 (275)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4699999999876
No 365
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=32.13 E-value=10 Score=33.10 Aligned_cols=14 Identities=43% Similarity=0.740 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||..+
T Consensus 34 ~llGpsGsGKSTLL 47 (359)
T 3fvq_A 34 FIIGASGCGKTTLL 47 (359)
T ss_dssp EEEESTTSSHHHHH
T ss_pred EEECCCCchHHHHH
Confidence 34799999999875
No 366
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=32.03 E-value=14 Score=31.79 Aligned_cols=15 Identities=47% Similarity=0.419 Sum_probs=11.9
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|+||||||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 456689999999854
No 367
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=32.03 E-value=11 Score=30.04 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3445799999998764
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=31.88 E-value=13 Score=29.25 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|..|||||+.
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 7 NLILIGAPGSGKGTQ 21 (217)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999864
No 369
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=31.87 E-value=11 Score=31.20 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.3
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||..+
T Consensus 36 ~liG~nGsGKSTLl 49 (262)
T 1b0u_A 36 SIIGSSGSGKSTFL 49 (262)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999865
No 370
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=31.83 E-value=11 Score=32.20 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=13.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-++.-.|++|||||..+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 34556899999998754
No 371
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=31.70 E-value=11 Score=31.21 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 36 ~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 344699999999866
No 372
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=31.63 E-value=18 Score=34.27 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=13.8
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.++..++||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 46789999999997653
No 373
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=31.33 E-value=18 Score=30.40 Aligned_cols=18 Identities=39% Similarity=0.652 Sum_probs=13.6
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|.--|.+|||||+..
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345556799999998765
No 374
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=31.32 E-value=11 Score=32.89 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=11.7
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||..+
T Consensus 33 ~llGpnGsGKSTLL 46 (359)
T 2yyz_A 33 ALLGPSGCGKTTTL 46 (359)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEcCCCchHHHHH
Confidence 34699999999876
No 375
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=31.16 E-value=21 Score=30.82 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=20.0
Q ss_pred chhHHHHhc--CC--ceEEEEeccCCCCcceEe
Q psy9445 143 NPLIDEVLS--GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 143 ~~~v~~~~~--G~--n~~i~ayG~tgsGKt~Tm 171 (243)
.+-++.++. |+ ...+..||.+|+|||..+
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 344566665 43 345778999999998764
No 376
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=31.16 E-value=11 Score=35.54 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=17.2
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
++.+++|.| ++..++||||||...
T Consensus 34 i~~i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 34 VEKVFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp HHHHTTCSC--EEEECSSHHHHHHHH
T ss_pred HHHHhCCCc--EEEEcCCccHHHHHH
Confidence 334455655 567899999999765
No 377
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.07 E-value=13 Score=35.97 Aligned_cols=51 Identities=25% Similarity=0.391 Sum_probs=27.5
Q ss_pred EEecceeecCCCcchhhhccccchhHH-HHhc----CCceEEEEeccCCCCcceEe
Q psy9445 121 TFGFDRVFSQESKQVDVYKYVVNPLID-EVLS----GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 121 ~f~fD~vF~~~a~q~ev~~~~~~~~v~-~~~~----G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+||.+.+....-..+.+.+..|+.. .++. .....|+-||++|+|||+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 355666655544433333332222221 1222 22346889999999999765
No 378
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=31.04 E-value=14 Score=28.09 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.7
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|...|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999998654
No 379
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=30.99 E-value=11 Score=31.18 Aligned_cols=14 Identities=29% Similarity=0.600 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 54 ~liG~NGsGKSTLl 67 (263)
T 2olj_A 54 VVIGPSGSGKSTFL 67 (263)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEEcCCCCcHHHHH
Confidence 34699999999865
No 380
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=30.98 E-value=11 Score=30.75 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 39 ~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 39 GIVGRSGSGKSTLT 52 (247)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999865
No 381
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=30.98 E-value=18 Score=31.32 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
..+-+|.||+|||.-+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446899999998543
No 382
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=30.95 E-value=11 Score=33.18 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=11.6
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||.+|
T Consensus 33 ~llGpsGsGKSTLL 46 (381)
T 3rlf_A 33 VFVGPSGCGKSTLL 46 (381)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEEcCCCchHHHHH
Confidence 34799999999875
No 383
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=30.89 E-value=11 Score=32.78 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=11.6
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||..+
T Consensus 45 ~llGpnGsGKSTLL 58 (355)
T 1z47_A 45 GLLGPSGSGKTTIL 58 (355)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999876
No 384
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=30.86 E-value=13 Score=33.43 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.6
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
...|+..|.+|+|||+|..
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4567778999999999974
No 385
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=30.84 E-value=14 Score=30.52 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.7
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|.+|||||+.
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999874
No 386
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=30.73 E-value=17 Score=36.63 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=18.3
Q ss_pred hHHHHhcCCceEEEEeccCCCCcceE
Q psy9445 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 145 ~v~~~~~G~n~~i~ayG~tgsGKt~T 170 (243)
.+..++.|.+ ++..++||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 4555677765 57899999999965
No 387
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=30.62 E-value=11 Score=29.06 Aligned_cols=15 Identities=33% Similarity=0.335 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|.+|||||..+
T Consensus 9 i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 9 LAFAAWSGTGKTTLL 23 (174)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 445699999998865
No 388
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=30.59 E-value=19 Score=28.24 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.4
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
..+-+|++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 3346799999998765
No 389
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=30.57 E-value=24 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.2
Q ss_pred HhcCCceEEEEeccCCCCcceEe
Q psy9445 149 VLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 149 ~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
++......|...|..|+|||.-+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45556678889999999998665
No 390
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=30.53 E-value=12 Score=30.50 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 31 ~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999865
No 391
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=30.49 E-value=14 Score=29.78 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.7
Q ss_pred ceEEEEeccCCCCcceE
Q psy9445 154 NCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~T 170 (243)
...|+..|..|||||+-
T Consensus 29 ~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 44688899999999754
No 392
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=30.39 E-value=12 Score=32.87 Aligned_cols=14 Identities=43% Similarity=0.695 Sum_probs=11.6
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||..+
T Consensus 33 ~llGpnGsGKSTLL 46 (372)
T 1g29_1 33 ILLGPSGCGKTTTL 46 (372)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCcHHHHHH
Confidence 34699999999876
No 393
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=30.36 E-value=12 Score=30.90 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.1
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 49 ~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 49 CALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999865
No 394
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=30.31 E-value=15 Score=28.56 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=12.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.-.|.+|||||+..
T Consensus 23 ~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLA 38 (207)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999998643
No 395
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=30.29 E-value=12 Score=32.76 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=11.6
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||..+
T Consensus 33 ~llGpnGsGKSTLL 46 (362)
T 2it1_A 33 ALLGPSGSGKSTLL 46 (362)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCchHHHHH
Confidence 34699999999876
No 396
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=30.26 E-value=17 Score=26.44 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=14.4
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
..-|...|.+|+|||..+
T Consensus 5 ~~~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred eEEEEEECcCCCCHHHHH
Confidence 345778899999998755
No 397
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=30.21 E-value=12 Score=30.89 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=11.4
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 45 ~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 45 GLIGPNGAGKTTTL 58 (256)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999865
No 398
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=30.15 E-value=21 Score=26.68 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=15.6
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
.....|...|.+|+|||..+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHH
Confidence 34566888999999998766
No 399
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=29.97 E-value=15 Score=29.16 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.6
Q ss_pred EEEeccCCCCcceE
Q psy9445 157 VFAYGQTGTGKTFT 170 (243)
Q Consensus 157 i~ayG~tgsGKt~T 170 (243)
|+..|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999864
No 400
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=29.96 E-value=12 Score=31.04 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=11.1
Q ss_pred EeccCCCCcceEe
Q psy9445 159 AYGQTGTGKTFTM 171 (243)
Q Consensus 159 ayG~tgsGKt~Tm 171 (243)
-.|++|||||..+
T Consensus 42 liG~nGsGKSTLl 54 (266)
T 4g1u_C 42 IIGPNGAGKSTLL 54 (266)
T ss_dssp EECCTTSCHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 4699999999875
No 401
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=29.89 E-value=13 Score=37.89 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=17.2
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
+..++.-|..|||||++|..
T Consensus 23 ~~~~~v~a~AGSGKT~vl~~ 42 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLVE 42 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHH
Confidence 56788899999999999854
No 402
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=29.88 E-value=18 Score=27.25 Aligned_cols=16 Identities=44% Similarity=0.601 Sum_probs=12.3
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|..|||||...
T Consensus 7 ~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVS 22 (179)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999998753
No 403
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=29.80 E-value=12 Score=33.29 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+--.|++|+|||..|
T Consensus 71 ~valvG~nGaGKSTLl 86 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFI 86 (413)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3444699999999985
No 404
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=29.75 E-value=15 Score=28.35 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|..|||||+..
T Consensus 12 ~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQS 27 (212)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4777899999998753
No 405
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=29.70 E-value=15 Score=32.90 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=14.4
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
..|...|.+|+|||++..
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356678999999998763
No 406
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=29.59 E-value=21 Score=28.35 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=12.8
Q ss_pred ceEEEEeccCCCCcc
Q psy9445 154 NCTVFAYGQTGTGKT 168 (243)
Q Consensus 154 n~~i~ayG~tgsGKt 168 (243)
---.|-||..|||||
T Consensus 20 g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 20 GQIQVILGPMFSGKS 34 (195)
T ss_dssp CEEEEEEECTTSCHH
T ss_pred eEEEEEECCCCCcHH
Confidence 346788999999999
No 407
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=29.44 E-value=12 Score=30.05 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=11.3
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 38 ~i~G~nGsGKSTLl 51 (229)
T 2pze_A 38 AVAGSTGAGKTSLL 51 (229)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999765
No 408
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=29.41 E-value=12 Score=30.63 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 35 ~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 35 AVLGQNGCGKSTLL 48 (253)
T ss_dssp EEECCSSSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999866
No 409
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=29.33 E-value=13 Score=34.67 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.3
Q ss_pred HHHhcCCceEEEEeccCCCCcceEe
Q psy9445 147 DEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 147 ~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
..+-.|. .++-+|++|+|||..+
T Consensus 55 ~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTC--CEEEECCTTSSHHHHH
T ss_pred ccccCCC--EEEEEeCCCCCHHHHH
Confidence 3444564 6677999999999876
No 410
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=29.21 E-value=20 Score=31.40 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=17.5
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.-..|+-.|..|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 466667888999999999876
No 411
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=29.18 E-value=13 Score=31.14 Aligned_cols=14 Identities=43% Similarity=0.759 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 51 ~liG~NGsGKSTLl 64 (279)
T 2ihy_A 51 ILYGLNGAGKTTLL 64 (279)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999865
No 412
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=29.15 E-value=13 Score=30.83 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 49 ~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999865
No 413
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=29.14 E-value=13 Score=32.68 Aligned_cols=14 Identities=43% Similarity=0.674 Sum_probs=11.7
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||..+
T Consensus 41 ~llGpnGsGKSTLL 54 (372)
T 1v43_A 41 VLLGPSGCGKTTTL 54 (372)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCChHHHHH
Confidence 34699999999876
No 414
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=29.12 E-value=24 Score=35.71 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.4
Q ss_pred cCCceEEEEeccCCCCcceE
Q psy9445 151 SGYNCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~T 170 (243)
.|....++..|+||+|||..
T Consensus 621 ~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 621 QPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp SSSCCEEEEECCCCTTTHHH
T ss_pred cCCcCcEEEECCCCCCHHHH
Confidence 47656788999999999965
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=29.05 E-value=16 Score=28.62 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=12.3
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|.-.|..|||||+.
T Consensus 6 ~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 6 IVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466779999999874
No 416
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=29.01 E-value=13 Score=30.41 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=11.4
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 33 ~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 33 ALMGPNGAGKSTLG 46 (250)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 44699999999765
No 417
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=28.94 E-value=18 Score=28.32 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.1
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|.-.|++|+|||.-+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999998754
No 418
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=28.91 E-value=13 Score=28.61 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=13.6
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|..|+|||..+
T Consensus 6 ~kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECcCCCCHHHHH
Confidence 45677899999998765
No 419
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=28.91 E-value=19 Score=28.35 Aligned_cols=28 Identities=46% Similarity=0.692 Sum_probs=19.9
Q ss_pred hhHHHHhc-CC--ceEEEEeccCCCCcceEe
Q psy9445 144 PLIDEVLS-GY--NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 144 ~~v~~~~~-G~--n~~i~ayG~tgsGKt~Tm 171 (243)
+-++.++. |+ ...+..+|.+|+|||..+
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~ 47 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHHH
Confidence 44666675 54 345778999999998554
No 420
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=28.80 E-value=13 Score=30.81 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+.-.|++|||||..+
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999999876
No 421
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=28.68 E-value=13 Score=30.85 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=12.0
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.-.|++|||||..+
T Consensus 48 ~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 48 TALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999775
No 422
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=28.68 E-value=13 Score=36.18 Aligned_cols=17 Identities=41% Similarity=0.626 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.|+-||+.|+|||+..
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 35789999999998643
No 423
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=28.57 E-value=13 Score=30.77 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=18.9
Q ss_pred hHHHHhcCCc--eEEEEeccCCCCcceEee
Q psy9445 145 LIDEVLSGYN--CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 145 ~v~~~~~G~n--~~i~ayG~tgsGKt~Tm~ 172 (243)
.++.+.-|.. -.+.-.|++|+|||..+.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 4555554442 356678999999998763
No 424
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=28.52 E-value=19 Score=26.04 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.2
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|.+|+|||..+
T Consensus 6 ~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998754
No 425
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=28.45 E-value=13 Score=30.45 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=11.6
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 30 ~liG~NGsGKSTLl 43 (249)
T 2qi9_C 30 HLVGPNGAGKSTLL 43 (249)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 45699999999875
No 426
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=28.43 E-value=15 Score=34.31 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=23.1
Q ss_pred ecCCCcchhhhccccchhHHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 128 FSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 128 F~~~a~q~ev~~~~~~~~v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
|.+...|.++... +.+.+.+|.+ +++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~----v~~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDF----LRSSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHH----HHHHHHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHcCCC--EEEECCCCCCHHHHH
Confidence 4455566665443 3344455654 678889999999764
No 427
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=28.37 E-value=18 Score=33.86 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=18.4
Q ss_pred HHHHhcCCceEEEEeccCCCCcceEe
Q psy9445 146 IDEVLSGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 146 v~~~~~G~n~~i~ayG~tgsGKt~Tm 171 (243)
+..+++|.+ ++..++||||||...
T Consensus 180 i~~l~~g~d--vlv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRL--TIMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCE--EEECCCTTSSTTTTH
T ss_pred HHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 555667766 567899999999873
No 428
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=28.29 E-value=18 Score=28.21 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|..|||||...
T Consensus 26 ~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLA 42 (211)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45666799999998644
No 429
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.09 E-value=19 Score=26.10 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=13.4
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
-|...|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998765
No 430
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=27.98 E-value=19 Score=26.50 Aligned_cols=18 Identities=39% Similarity=0.510 Sum_probs=14.6
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|...|.+|+|||..+
T Consensus 8 ~~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred eEEEEEECCCCCCHHHHH
Confidence 346788899999999755
No 431
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=27.87 E-value=17 Score=34.22 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.1
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..++..|+||||||...
T Consensus 47 ~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEEcCCCCcHHHHH
Confidence 45678899999999875
No 432
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=27.53 E-value=20 Score=26.09 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=13.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKssli 20 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLL 20 (170)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 34678899999998654
No 433
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=27.51 E-value=17 Score=31.46 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=17.4
Q ss_pred hHHHHhc-CCceEEEEeccCCCCcceEe
Q psy9445 145 LIDEVLS-GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 145 ~v~~~~~-G~n~~i~ayG~tgsGKt~Tm 171 (243)
.++.++. +....+--.|.+|+|||.+|
T Consensus 61 ald~ll~i~~Gq~~gIiG~nGaGKTTLl 88 (347)
T 2obl_A 61 AIDGLLTCGIGQRIGIFAGSGVGKSTLL 88 (347)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHH
T ss_pred EEEeeeeecCCCEEEEECCCCCCHHHHH
Confidence 4555543 22334445799999999876
No 434
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=27.48 E-value=23 Score=26.33 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=9.1
Q ss_pred eEEEEeccCCCCcceEee
Q psy9445 155 CTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm~ 172 (243)
.-|...|.+|+|||..+.
T Consensus 9 ~ki~v~G~~~~GKssl~~ 26 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLF 26 (183)
T ss_dssp EEEEEECCCCC-------
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999998763
No 435
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=27.43 E-value=18 Score=27.74 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.--|..|||||...
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3666799999998753
No 436
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=27.41 E-value=14 Score=31.10 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=13.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.|--.|.+|||||+.+
T Consensus 81 ~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTA 97 (308)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34445699999999876
No 437
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=27.39 E-value=14 Score=28.38 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|.+|+|||..+
T Consensus 28 ~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 28 EVAFAGRSNAGKSSAL 43 (210)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666899999999765
No 438
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=27.36 E-value=15 Score=31.92 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.4
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
...-+|++|+|||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 4567899999999876
No 439
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=27.17 E-value=21 Score=30.03 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEee
Q psy9445 156 TVFAYGQTGTGKTFTME 172 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~ 172 (243)
.+...|.+|+|||.++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 44456999999998763
No 440
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=27.16 E-value=20 Score=26.01 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35677899999998765
No 441
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=27.09 E-value=14 Score=29.65 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=11.6
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|---|++|||||+.+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334599999998765
No 442
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=27.03 E-value=18 Score=27.91 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQS 26 (215)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998753
No 443
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=26.93 E-value=20 Score=31.08 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=11.3
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||.-+
T Consensus 27 ~i~G~NGaGKTTll 40 (365)
T 3qf7_A 27 VVEGPNGAGKSSLF 40 (365)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 35899999998654
No 444
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.83 E-value=24 Score=29.70 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
..-+|++|+|||..|
T Consensus 27 ~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 27 TAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEECCTTTCSTHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 346799999998665
No 445
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=26.81 E-value=25 Score=25.33 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45778899999998664
No 446
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=26.74 E-value=19 Score=33.48 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=13.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|+-+|++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 6889999999998654
No 447
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=26.69 E-value=21 Score=26.26 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 8 ~~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999998755
No 448
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=26.60 E-value=21 Score=25.92 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=13.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 4 ~~i~v~G~~~~GKssli 20 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999998765
No 449
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=26.49 E-value=21 Score=34.36 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=12.1
Q ss_pred EEEEeccCCCCcce
Q psy9445 156 TVFAYGQTGTGKTF 169 (243)
Q Consensus 156 ~i~ayG~tgsGKt~ 169 (243)
.++..|+||||||.
T Consensus 111 ~vii~gpTGSGKTt 124 (773)
T 2xau_A 111 IMVFVGETGSGKTT 124 (773)
T ss_dssp EEEEECCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 46678999999998
No 450
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=26.26 E-value=21 Score=30.94 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|.-.|+||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 467789999999863
No 451
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=26.13 E-value=19 Score=30.84 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=12.4
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|---|.+|||||+++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445599999999875
No 452
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=26.11 E-value=14 Score=28.23 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=13.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 30 ~kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 34667899999998765
No 453
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=26.06 E-value=26 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=15.8
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
+....|+..|.+|+|||..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34456888999999999765
No 454
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=26.05 E-value=21 Score=27.32 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.--|..|||||...
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999998653
No 455
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=25.78 E-value=22 Score=25.86 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.2
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLV 23 (170)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 45778899999998765
No 456
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=25.78 E-value=22 Score=26.74 Aligned_cols=17 Identities=18% Similarity=0.256 Sum_probs=14.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45778899999998765
No 457
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=25.70 E-value=15 Score=29.33 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=14.6
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|...|.+|+|||..+
T Consensus 29 ~~~i~lvG~~g~GKStli 46 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATG 46 (239)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456778899999998765
No 458
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=25.68 E-value=17 Score=29.35 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=14.7
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|...|.+|+|||.++
T Consensus 22 ~~~I~lvG~~g~GKStl~ 39 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAG 39 (260)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 356778899999999775
No 459
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=25.57 E-value=23 Score=25.64 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.0
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|...|.+|+|||..+
T Consensus 5 ki~v~G~~~~GKssli 20 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999998654
No 460
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=25.53 E-value=36 Score=25.99 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.0
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
...-|...|..|+|||..+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp CCEEEEEEEETTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456788899999998765
No 461
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=25.48 E-value=22 Score=26.51 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999998765
No 462
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=25.48 E-value=23 Score=26.01 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.6
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 15 ~~i~v~G~~~~GKssli 31 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLI 31 (179)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999998765
No 463
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=25.40 E-value=16 Score=32.23 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.5
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||.++
T Consensus 51 ~llGpsGsGKSTLL 64 (390)
T 3gd7_A 51 GLLGRTGSGKSTLL 64 (390)
T ss_dssp EEEESTTSSHHHHH
T ss_pred EEECCCCChHHHHH
Confidence 34699999999875
No 464
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=25.37 E-value=23 Score=25.64 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 7 ~~i~v~G~~~~GKssli 23 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLV 23 (170)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35778899999998765
No 465
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=25.30 E-value=18 Score=30.56 Aligned_cols=15 Identities=33% Similarity=0.454 Sum_probs=12.1
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.--|..|||||..+
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 345699999999875
No 466
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=25.09 E-value=10 Score=32.87 Aligned_cols=14 Identities=43% Similarity=0.721 Sum_probs=11.7
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
--.|++|||||..+
T Consensus 30 ~llGpnGsGKSTLL 43 (348)
T 3d31_A 30 VILGPTGAGKTLFL 43 (348)
T ss_dssp EEECCCTHHHHHHH
T ss_pred EEECCCCccHHHHH
Confidence 34699999999876
No 467
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=24.88 E-value=22 Score=31.13 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
-.+.-+|++|+|||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46777999999998754
No 468
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=24.83 E-value=26 Score=27.37 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=13.0
Q ss_pred ceEEEEeccCCCCcceE
Q psy9445 154 NCTVFAYGQTGTGKTFT 170 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~T 170 (243)
...|.-.|..|||||+.
T Consensus 12 ~~iIgltG~~GSGKSTv 28 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTV 28 (192)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34566779999999864
No 469
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=24.75 E-value=17 Score=30.59 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=11.4
Q ss_pred EEeccCCCCcceEe
Q psy9445 158 FAYGQTGTGKTFTM 171 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm 171 (243)
.-.|++|||||..+
T Consensus 68 ~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 68 AVAGSTGAGKTSLL 81 (290)
T ss_dssp EEEESTTSSHHHHH
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999875
No 470
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=24.64 E-value=24 Score=25.93 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=13.7
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 10 ~~i~v~G~~~~GKssl~ 26 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLL 26 (181)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999998765
No 471
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=24.56 E-value=24 Score=25.58 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
-|...|.+|+|||.-+
T Consensus 4 ki~~vG~~~~GKSsli 19 (166)
T 3q72_A 4 KVLLLGAPGVGKSALA 19 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999998755
No 472
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=24.39 E-value=20 Score=27.14 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=4.8
Q ss_pred ceEEEEeccCCCCcceEee
Q psy9445 154 NCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~ 172 (243)
..-|...|.+|+|||..+.
T Consensus 20 ~~~i~v~G~~~~GKssli~ 38 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALIS 38 (208)
T ss_dssp EEEEEEC------------
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3467888999999997663
No 473
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=24.35 E-value=25 Score=25.45 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=12.4
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|...|.+|+|||..+
T Consensus 3 i~~~G~~~~GKssl~ 17 (164)
T 1r8s_A 3 ILMVGLDAAGKTTIL 17 (164)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998755
No 474
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=24.25 E-value=25 Score=26.36 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=13.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|..|+|||..+
T Consensus 22 ~ki~vvG~~~~GKSsli 38 (190)
T 3con_A 22 YKLVVVGAGGVGKSALT 38 (190)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 35778899999998765
No 475
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=24.20 E-value=8.1 Score=29.83 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=11.9
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
+.--|.+|||||+.+
T Consensus 5 v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEESCHHHHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999766
No 476
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=24.12 E-value=25 Score=25.84 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 9 ~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CEEEEESCTTTTHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45777899999998766
No 477
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=24.11 E-value=24 Score=28.70 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=12.9
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.-.|++|||||...
T Consensus 11 ~i~i~G~~GsGKsTla 26 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVS 26 (233)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999998754
No 478
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=24.09 E-value=25 Score=25.56 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 8 ~~i~v~G~~~~GKssl~ 24 (171)
T 1upt_A 8 MRILILGLDGAGKTTIL 24 (171)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45778899999998755
No 479
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=24.02 E-value=25 Score=25.82 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 10 ~~i~v~G~~~~GKssli 26 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALT 26 (181)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999998755
No 480
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=23.84 E-value=17 Score=27.26 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=13.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 8 ~~i~lvG~~gvGKStL~ 24 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIF 24 (188)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677899999998755
No 481
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=23.84 E-value=26 Score=25.70 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.9
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
..|...|.+|+|||..+
T Consensus 16 ~~i~v~G~~~~GKSsli 32 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLL 32 (179)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999998754
No 482
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=23.76 E-value=11 Score=29.16 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=11.6
Q ss_pred EEEeccCCCCcceEe
Q psy9445 157 VFAYGQTGTGKTFTM 171 (243)
Q Consensus 157 i~ayG~tgsGKt~Tm 171 (243)
|...|..|||||+.+
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 455799999998643
No 483
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=23.61 E-value=17 Score=32.83 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=15.5
Q ss_pred EEEEeccCCCCcceEeecC
Q psy9445 156 TVFAYGQTGTGKTFTMEGE 174 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm~G~ 174 (243)
..+..|..|||||+.+...
T Consensus 163 v~~I~G~aGsGKTt~I~~~ 181 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSR 181 (446)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 3567899999999999653
No 484
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=23.59 E-value=26 Score=26.05 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.0
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 11 ~ki~v~G~~~~GKSsli 27 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLL 27 (186)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999755
No 485
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=23.47 E-value=25 Score=28.48 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.6
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.|.--|++|||||..+
T Consensus 29 ~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 29 VITVDGPSGAGKGTLC 44 (252)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555799999999765
No 486
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=23.46 E-value=30 Score=29.39 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.3
Q ss_pred EEeccCCCCcceEee
Q psy9445 158 FAYGQTGTGKTFTME 172 (243)
Q Consensus 158 ~ayG~tgsGKt~Tm~ 172 (243)
.-+|++|+|||..+.
T Consensus 27 ~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEECCCCCCHHHHHH
Confidence 467999999998764
No 487
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=23.07 E-value=27 Score=25.90 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.5
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 5 ~ki~v~G~~~~GKSsli 21 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALT 21 (189)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35778899999998654
No 488
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=23.05 E-value=27 Score=25.78 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.6
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 19 ~ki~v~G~~~~GKSsli 35 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALT 35 (187)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999998654
No 489
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=22.94 E-value=28 Score=32.96 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=14.9
Q ss_pred cCCceEEEEeccCCCCcceEe
Q psy9445 151 SGYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 151 ~G~n~~i~ayG~tgsGKt~Tm 171 (243)
.|.+ ++..++||||||...
T Consensus 240 ~g~d--vlv~apTGSGKTl~~ 258 (673)
T 2wv9_A 240 KRQL--TVLDLHPGAGKTRRI 258 (673)
T ss_dssp TTCE--EEECCCTTTTTTTTH
T ss_pred cCCe--EEEEeCCCCCHHHHH
Confidence 4554 577899999999873
No 490
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=22.89 E-value=25 Score=30.95 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=15.6
Q ss_pred CCceEEEEeccCCCCcceEe
Q psy9445 152 GYNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 152 G~n~~i~ayG~tgsGKt~Tm 171 (243)
.....|+..|..|||||+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla 275 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFI 275 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 34456788899999998764
No 491
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=22.86 E-value=19 Score=30.12 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=12.5
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
.+...|++|+|||..+
T Consensus 171 iv~l~G~sG~GKSTll 186 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLL 186 (301)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3445799999999765
No 492
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=22.84 E-value=38 Score=25.31 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=14.9
Q ss_pred CceEEEEeccCCCCcceEe
Q psy9445 153 YNCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 153 ~n~~i~ayG~tgsGKt~Tm 171 (243)
...-|...|.+|+|||..+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~ 33 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLL 33 (181)
T ss_dssp SCEEEEEEESTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4466888999999998554
No 493
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=22.82 E-value=27 Score=26.40 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.8
Q ss_pred eEEEEeccCCCCcceEe
Q psy9445 155 CTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~Tm 171 (243)
.-|...|.+|+|||..+
T Consensus 15 ~ki~v~G~~~~GKSsli 31 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALT 31 (206)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45778899999998754
No 494
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=22.81 E-value=24 Score=28.41 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=12.7
Q ss_pred eEEEEeccCCCCcceE
Q psy9445 155 CTVFAYGQTGTGKTFT 170 (243)
Q Consensus 155 ~~i~ayG~tgsGKt~T 170 (243)
-.|.-.|..|||||+.
T Consensus 23 ~iI~I~G~~GSGKST~ 38 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSV 38 (252)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 3466779999999865
No 495
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=22.80 E-value=27 Score=25.71 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.5
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
...|...|.+|+|||..+
T Consensus 12 ~~ki~v~G~~~~GKSsli 29 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLV 29 (181)
T ss_dssp EEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECcCCCCHHHHH
Confidence 356788899999998654
No 496
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=22.75 E-value=15 Score=29.24 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.6
Q ss_pred ceEEEEeccCCCCcceEeec
Q psy9445 154 NCTVFAYGQTGTGKTFTMEG 173 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm~G 173 (243)
.+.|+.|+.+|.|||+.-+|
T Consensus 28 ~g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46789999999999998877
No 497
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=22.68 E-value=28 Score=25.83 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=14.2
Q ss_pred ceEEEEeccCCCCcceEe
Q psy9445 154 NCTVFAYGQTGTGKTFTM 171 (243)
Q Consensus 154 n~~i~ayG~tgsGKt~Tm 171 (243)
..-|...|.+|+|||..+
T Consensus 18 ~~ki~v~G~~~~GKSsl~ 35 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALT 35 (183)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345778899999998654
No 498
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=22.65 E-value=27 Score=31.72 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=19.1
Q ss_pred hhHHHHhc-C--CceEEEEeccCCCCcceEee
Q psy9445 144 PLIDEVLS-G--YNCTVFAYGQTGTGKTFTME 172 (243)
Q Consensus 144 ~~v~~~~~-G--~n~~i~ayG~tgsGKt~Tm~ 172 (243)
+.++.+.- | ..-.+.-.|++|||||..+.
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~ 57 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSI 57 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHH
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 34555554 2 23455668999999998753
No 499
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=22.55 E-value=28 Score=25.28 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=12.8
Q ss_pred EEEEeccCCCCcceEe
Q psy9445 156 TVFAYGQTGTGKTFTM 171 (243)
Q Consensus 156 ~i~ayG~tgsGKt~Tm 171 (243)
-|...|.+|+|||..+
T Consensus 4 ki~ivG~~~~GKSsli 19 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA 19 (169)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999998655
No 500
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=22.44 E-value=27 Score=31.10 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=11.8
Q ss_pred EEEEeccCCCCcceE
Q psy9445 156 TVFAYGQTGTGKTFT 170 (243)
Q Consensus 156 ~i~ayG~tgsGKt~T 170 (243)
.|+..|+||||||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 356679999999853
Done!