RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9445
(243 letters)
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 220 bits (564), Expect = 4e-71
Identities = 90/157 (57%), Positives = 118/157 (75%), Gaps = 2/157 (1%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPLNS ER +S +VD RE+ + ++ K++K F FDR F ESKQ DVY VV+P
Sbjct: 32 RPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSP 91
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
LI+EVL+GYNCTVFAYGQTGTGKT TM G ++ + SW+DD GI+PRA++HLFDELR
Sbjct: 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELR 151
Query: 205 LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
++ + E+T+R+S+LE+YNEEL DLLS DD TK+R+
Sbjct: 152 MM-EVEYTMRISYLELYNEELCDLLST-DDTTKIRIF 186
Score = 169 bits (431), Expect = 4e-51
Identities = 55/86 (63%), Positives = 72/86 (83%), Gaps = 1/86 (1%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDK-RAREAG 59
MNA SSRSHT+F+I +HI++N ++GE++L+ GKLNLVDLAGSEN+ ++G + R RE
Sbjct: 229 MNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETV 288
Query: 60 NINQSLLTLGRCITALVEKTPHIPYR 85
NINQSLLTLGR ITALV++ PH+PYR
Sbjct: 289 NINQSLLTLGRVITALVDRAPHVPYR 314
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 209 bits (535), Expect = 7e-67
Identities = 81/161 (50%), Positives = 116/161 (72%), Gaps = 5/161 (3%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIKE--RVNDKISKTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + KT+ FD VF +KQ+DVY+ V
Sbjct: 17 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 76
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F+
Sbjct: 77 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE 136
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDI-TKLRLK 241
+L EF+V+VS LEIYNEEL DLL+P+ D+ +L++
Sbjct: 137 KLT-DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMF 176
Score = 176 bits (449), Expect = 5e-54
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 219 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 278
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 279 INQSLLTLGRVITALVERTPHVPYR 303
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 200 bits (510), Expect = 3e-63
Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 10/157 (6%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPL E S + R + FGF V ++++ Q VY+ V P
Sbjct: 20 RPLLPKELLHGHQSCLQVEPGLGRVTLGR-----DRHFGFHVVLAEDAGQEAVYQACVQP 74
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
L++ G+N TVFAYGQTG+GKT+TM + GIVPRAM F +
Sbjct: 75 LLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS-----LLEDEQGIVPRAMAEAFKLID 129
Query: 205 LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
+ V VS+LE+Y EE DLL ++L+
Sbjct: 130 ENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLR 166
Score = 155 bits (393), Expect = 9e-46
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNS-----LDGEELLRTGKLNLVDLAGSENIGRSGAQDKRA 55
+N SSRSHT+FT+T+ + + L K + VDLAGSE + ++G+ +R
Sbjct: 207 LNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERL 266
Query: 56 REAGNINQSLLTLGRCITALVE---KTPHIPYR 85
+E+ IN SLL LG I+AL + + HIPYR
Sbjct: 267 KESIQINSSLLALGNVISALGDPQRRGSHIPYR 299
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 197 bits (504), Expect = 4e-62
Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 12/160 (7%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYV 141
RP+N E+AA +VD ++++K + ++ KTF FD V+ +KQ ++Y
Sbjct: 30 RPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDET 89
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
PL+D VL G+N T+FAYGQTGTGKT+TMEG + D G++P + +H+F
Sbjct: 90 FRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIR--------GDPEKRGVIPNSFDHIFT 141
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
+ + ++ VR S+LEIY EE+ DLLS D +L LK
Sbjct: 142 HISRSQNQQYLVRASYLEIYQEEIRDLLSK-DQTKRLELK 180
Score = 164 bits (417), Expect = 4e-49
Identities = 52/86 (60%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH IF ITI + LDGE +R GKLNLVDLAGSE ++GAQ +R +EA
Sbjct: 221 MNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATK 280
Query: 61 INQSLLTLGRCITALVE-KTPHIPYR 85
IN SL LG I+ALV+ K+ HIPYR
Sbjct: 281 INLSLSALGNVISALVDGKSTHIPYR 306
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 192 bits (491), Expect = 3e-60
Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 13/158 (8%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RP N VE + IV T+ + + +F FDRVF KQ D++ + + P
Sbjct: 15 RPQNRVEIESGGQPIVTFQGPDTCTVD---SKEAQGSFTFDRVFDMSCKQSDIFDFSIKP 71
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
+D++L+GYN TVFAYGQTG GK++TM G +DP G++PR + +F +
Sbjct: 72 TVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD-------GRGVIPRIVEQIFTSIL 124
Query: 205 LL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
+ E+TVRVS++EIY E + DLL+P + L +
Sbjct: 125 SSAANIEYTVRVSYMEIYMERIRDLLAPQN--DNLPVH 160
Score = 152 bits (386), Expect = 1e-44
Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 4/86 (4%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH+IF ITI K+ ++G+L LVDLAGSE +G++GA + EA
Sbjct: 201 MNQESSRSHSIFVITITQKNVETGSA---KSGQLFLVDLAGSEKVGKTGASGQTLEEAKK 257
Query: 61 INQSLLTLGRCITALVE-KTPHIPYR 85
IN+SL LG I AL + K+ H+PYR
Sbjct: 258 INKSLSALGMVINALTDGKSSHVPYR 283
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 190 bits (484), Expect = 1e-59
Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPLN E I + I SK + FDRVF + Q VY
Sbjct: 16 RPLNESEVNRGDKYIAKFQGEDTVVIA-------SKPYAFDRVFQSSTSQEQVYNDCAKK 68
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
++ +VL GYN T+FAYGQT +GKT TMEG D GI+PR + +F+ +
Sbjct: 69 IVKDVLEGYNGTIFAYGQTSSGKTHTMEG--------KLHDPEGMGIIPRIVQDIFNYIY 120
Query: 205 LL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
+ + EF ++VS+ EIY +++ DLL T L +
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDV--SKTNLSVH 156
Score = 151 bits (385), Expect = 7e-45
Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH+IF I + ++ E +GKL LVDLAGSE + ++GA+ EA N
Sbjct: 197 MNEHSSRSHSIFLINVKQEN---TQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 253
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN+SL LG I+AL E + ++PYR
Sbjct: 254 INKSLSALGNVISALAEGSTYVPYR 278
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 192 bits (489), Expect = 1e-59
Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 15/159 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RP A V S + I N + + + FD + + S Q D+Y V P
Sbjct: 30 RPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQP 89
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
++ +L G N +V AYG TG GKT TM G + P G++PRA+ L R
Sbjct: 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGS---------PEQP--GVIPRALMDLLQLTR 138
Query: 205 LLGDA----EFTVRVSFLEIYNEELIDLLSPTDDITKLR 239
G +V +S+LEIY E+++DLL P +R
Sbjct: 139 EEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIR 177
Score = 156 bits (396), Expect = 7e-46
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
+N SSRSH + + + ++ + R GKL L+DLAGSE+ R+G + R +E+G
Sbjct: 218 LNQRSSRSHAVLLVKVDQRERLAPFRQ--REGKLYLIDLAGSEDNRRTGNKGLRLKESGA 275
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN SL LG+ + AL + P +PYR
Sbjct: 276 INTSLFVLGKVVDALNQGLPRVPYR 300
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 191 bits (487), Expect = 1e-59
Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 15/158 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPLN E A S +V ++ +E K + FD+VF + Q VY
Sbjct: 20 RPLNDSEEKAGSKFVVKFPNNV----EENCISIAGKVYLFDKVFKPNASQEKVYNEAAKS 75
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
++ +VL+GYN T+FAYGQT +GKT TMEG D GI+PR +N +F+ +
Sbjct: 76 IVTDVLAGYNGTIFAYGQTSSGKTHTMEG--------VIGDSVKQGIIPRIVNDIFNHIY 127
Query: 205 LL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
+ + EF ++VS+ EIY +++ DLL + L +
Sbjct: 128 AMEVNLEFHIKVSYYEIYMDKIRDLLDVSK--VNLSVH 163
Score = 147 bits (373), Expect = 1e-42
Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH++F I + ++ + +GKL LVDLAGSE + ++GA+ EA N
Sbjct: 204 MNEHSSRSHSVFLINVKQEN---LENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKN 260
Query: 61 INQSLLTLGRCITALVE-KTPHIPYR 85
IN+SL LG I+AL + HIPYR
Sbjct: 261 INKSLSALGNVISALADGNKTHIPYR 286
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 187 bits (477), Expect = 3e-58
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 15/157 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPLNS E + + V + + SK+F FDRVF +VY+ + P
Sbjct: 13 RPLNSREESLGETAQVYWKTDNNVIY----QVDGSKSFNFDRVFHGNETTKNVYEEIAAP 68
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
+ID + GYN T+FAYGQT +GKT+TM G + G++PRA++ +F +++
Sbjct: 69 IIDSAIQGYNGTIFAYGQTASGKTYTMMG-----------SEDHLGVIPRAIHDIFQKIK 117
Query: 205 LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
D EF +RVS++EIYNE + DLL T + L ++
Sbjct: 118 KFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIR 154
Score = 140 bits (354), Expect = 6e-40
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 1 MNAHSSRSHTIFTITIHIK--DNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREA 58
MN SSRSHTIF + + + + E ++ LNLVDLAGSE ++GA R +E
Sbjct: 195 MNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEG 254
Query: 59 GNINQSLLTLGRCITALVE--KTPHIPYR 85
NIN+SL LG+ I L + I YR
Sbjct: 255 CNINRSLFILGQVIKKLSDGQVGGFINYR 283
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 186 bits (474), Expect = 2e-57
Identities = 51/165 (30%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVY 138
RPLN E A K ++ S + + E ++ F FD F + + VY
Sbjct: 60 RPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVY 119
Query: 139 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 198
++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 120 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSG-----KAQNASKGIYAMASRD 174
Query: 199 LFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
+F V V+F EIYN +L DLL+ KLR+
Sbjct: 175 VFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK---AKLRVL 216
Score = 139 bits (353), Expect = 2e-39
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAR-EAG 59
N++SSRSH F I + K GK +LVDLAG+E + + D++ R E
Sbjct: 257 ANSNSSRSHACFQIILRAKGR--------MHGKFSLVDLAGNERGADTSSADRQTRMEGA 308
Query: 60 NINQSLLTLGRCITALVEKTPHIPYR 85
IN+SLL L CI AL + H P+R
Sbjct: 309 EINKSLLALKECIRALGQNKAHTPFR 334
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 184 bits (469), Expect = 3e-57
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
P + + S ++ F FD F Q ++Y+ ++ P
Sbjct: 31 APYRQFLGRREPSVVQFPPWSDGKSLIVD-----QNEFHFDHAFPATISQDEMYQALILP 85
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
L+D++L G+ CT AYGQTGTGK+++M + GI+PRA+ +F+ +
Sbjct: 86 LVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGE-----ILPEHLGILPRALGDIFERVT 140
Query: 205 LLGD---AEFTVRVSFLEIYNEELIDLLSPTDD 234
+ V SF+EIYNE+ DLL T
Sbjct: 141 ARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173
Score = 150 bits (380), Expect = 6e-44
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 9/85 (10%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN++SSRSH I TI + + ++N+VDLAGSE + R+G + +E N
Sbjct: 213 MNSNSSRSHAIVTIHV---------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVN 263
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN LL++ + + ++ IPYR
Sbjct: 264 INLGLLSINKVVMSMAAGHTVIPYR 288
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 185 bits (472), Expect = 6e-57
Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVY 138
RPLN E A K ++ S + + E ++ F FD F + + VY
Sbjct: 80 RPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVY 139
Query: 139 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 198
++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 140 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSG-----KSQNASKGIYAMASRD 194
Query: 199 LFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
+F + V V+F EIYN ++ DLL+ KLR+
Sbjct: 195 VFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK---AKLRVL 236
Score = 138 bits (349), Expect = 9e-39
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAR-EAG 59
N++SSRSH F I + K GK +LVDLAG+E + + D++ R E
Sbjct: 277 ANSNSSRSHACFQILLRTKGR--------LHGKFSLVDLAGNERGADTSSADRQTRMEGA 328
Query: 60 NINQSLLTLGRCITALVEKTPHIPYR 85
IN+SLL L CI AL + H P+R
Sbjct: 329 EINKSLLALKECIRALGQNKAHTPFR 354
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 183 bits (468), Expect = 7e-57
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVY 138
RPL+ +E+ K I+ ++ + I E F D+VF VY
Sbjct: 9 RPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVY 68
Query: 139 KYVVNPLIDEVL-SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 197
+ + PLI ++ +G C+ FAYGQTG+GKT+TM G + + GI A
Sbjct: 69 ENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQ------PYGQSDTPGIFQYAAG 122
Query: 198 HLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
+F L + D + +SF EIY +L DLL +
Sbjct: 123 DIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK---MVAAL 164
Score = 141 bits (358), Expect = 2e-40
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAR-EAG 59
N SSRSH I I + D + GK+ +DLAGSE + +Q+K+ + +
Sbjct: 205 QNDESSRSHAILNIDLK------DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGA 258
Query: 60 NINQSLLTLGRCITALVEKTPHIPYR 85
NIN+SLL L CI A+ HIP+R
Sbjct: 259 NINRSLLALKECIRAMDSDKNHIPFR 284
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 183 bits (466), Expect = 7e-57
Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RP+ + + + + +I ++ +F D+VFS ++ Q DV++ V
Sbjct: 13 RPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QA 71
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
L+ + G+N +FAYGQTG GKT+TMEG N GI RA+ LF E++
Sbjct: 72 LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP-----------GINQRALQLLFSEVQ 120
Query: 205 LL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
D E+T+ VS EIYNE L DLL + KL ++
Sbjct: 121 EKASDWEYTITVSAAEIYNEVLRDLLGK-EPQEKLEIR 157
Score = 146 bits (372), Expect = 7e-43
Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 5/89 (5%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
+N HSSRSH + +T+ + G TGKLNLVDLAGSE +G+SGA+ R REA +
Sbjct: 200 LNEHSSRSHALLIVTVRGV-DCSTGLR--TTGKLNLVDLAGSERVGKSGAEGSRLREAQH 256
Query: 61 INQSLLTLGRCITALVEKTPHIPYRPLNS 89
IN+SL LG I AL + H+P+R NS
Sbjct: 257 INKSLSALGDVIAALRSRQGHVPFR--NS 283
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 183 bits (466), Expect = 1e-56
Identities = 59/166 (35%), Positives = 82/166 (49%), Gaps = 23/166 (13%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITI--------KERVNDKISKTFGFDRVFSQESKQVD 136
RPLN+ E + +I+ + I K+ +TF FD V+ Q S
Sbjct: 13 RPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYG 72
Query: 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 196
+++ PLID VL G+N T+FAYGQTG GKT+TM G + G +P +
Sbjct: 73 IFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG-----------NKEEPGAIPNSF 121
Query: 197 NHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
HLFD + + F V S+LE+YNEE+ DL+ TKL LK
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN---TKLPLK 164
Score = 160 bits (407), Expect = 8e-48
Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH+IF + I + + +E++R GKLNLVDLAGSE ++GA + E
Sbjct: 205 MNDTSSRSHSIFMVRIECSEVI-ENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAK 263
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
IN SL LG I+ LVE HIPYR
Sbjct: 264 INLSLSALGLVISKLVEGATHIPYR 288
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 183 bits (466), Expect = 1e-56
Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 85 RPLNSVER----AAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKY 140
+P + +D ++I N + +F D V ++ Q VY+
Sbjct: 32 KPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL-HDASQDLVYET 90
Query: 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLF 200
V ++ + L GYN T+ YGQTG GKT+TM G + ++ GI+PRA+ +F
Sbjct: 91 VAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG--------ATENYKHRGILPRALQQVF 142
Query: 201 DELRLLGDAEFTVRVSFLEIYNEELIDLLSPT----DDITKLRLK 241
+ TVRVS+LEIYNE L DLLS +T + +
Sbjct: 143 RMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIV 187
Score = 150 bits (380), Expect = 1e-43
Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN +SSRSH IFTI + + EE T K+NLVDLAGSE +G+SG++ + +EA
Sbjct: 227 MNKNSSRSHCIFTIYLEAHSRT-LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATY 285
Query: 61 INQSLLTLGRCITALVE-KTPHIPYR 85
IN+SL L + I AL + K HIP+R
Sbjct: 286 INKSLSFLEQAIIALGDQKRDHIPFR 311
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 180 bits (459), Expect = 6e-55
Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 17/164 (10%)
Query: 85 RPLNSVERAAKSCSIVDC-SSSREITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYV 141
RP E C+ S+ E+ + + + F FD+VF S Q D+++ +
Sbjct: 68 RPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFE-M 126
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V+PLI L GYN +FAYGQTG+GKT+TM+G + G++PR ++ LFD
Sbjct: 127 VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV-----------GVIPRTVDLLFD 175
Query: 202 ELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
+R + E+ ++ +FLEIYNE L DLLS ++R+ KN
Sbjct: 176 SIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKN 219
Score = 133 bits (337), Expect = 5e-37
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
N SSRSH + + + + ++ + G +NLVDLAGSE S R E N
Sbjct: 258 GNERSSRSHAVTKLELIGRH---AEKQEISVGSINLVDLAGSE----SPKTSTRMTETKN 310
Query: 61 INQSLLTLGRCITALVEKTPHIPYRPLNS 89
IN+SL L I AL++K HIPYR NS
Sbjct: 311 INRSLSELTNVILALLQKQDHIPYR--NS 337
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 178 bits (454), Expect = 1e-54
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 16/161 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPL E AK + + E T++ D +K +DRVF + Q DV++
Sbjct: 14 RPLCEKEIIAKERNAIRSVD--EFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE-DTKY 70
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
L+ + GYN +FAYGQTG+GKTFT+ G SN G+ PRAM+ LF ++
Sbjct: 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP-----------GLTPRAMSELFRIMK 119
Query: 205 LL-GDAEFTVRVSFLEIYNEELIDLLSPTDDI-TKLRLKKN 243
F+++ +E+Y + L+DLL P KL +KK+
Sbjct: 120 KDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 160
Score = 143 bits (363), Expect = 3e-41
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH I ++ I + + + GKL+ VDLAGSE + +SG+ + +EA +
Sbjct: 199 MNEQSSRSHLIVSVIIESTN---LQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQS 255
Query: 61 INQSLLTLGRCITALVEKTPHIPYRPLNS 89
IN+SL LG I+AL HIPYR N
Sbjct: 256 INKSLSALGDVISALSSGNQHIPYR--NH 282
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 177 bits (450), Expect = 6e-54
Identities = 54/181 (29%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 85 RPLNSVERAAKSCSIVDC-----------------SSSREITIKERVNDKISKTFGFDRV 127
RP+ E ++ S R T+ F FDRV
Sbjct: 31 RPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRV 90
Query: 128 FSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDP 187
F S Q +V++ + L+ L GY +FAYGQTG+GKTFTMEG DP
Sbjct: 91 FPPGSGQDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ------- 142
Query: 188 LSGIVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSP---TDDITKLRLKK 242
L G++PRA+ HLF + L ++ S++EIYNE + DLL+ + +++
Sbjct: 143 LEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRR 202
Query: 243 N 243
Sbjct: 203 A 203
Score = 143 bits (362), Expect = 6e-41
Identities = 40/93 (43%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQ----DKRAR 56
N SSRSH++F + I + +S G + L+LVDLAGSE + A +R R
Sbjct: 244 QNERSSRSHSVFQLQISGE-HSSRGLQ--CGAPLSLVDLAGSERLDPGLALGPGERERLR 300
Query: 57 EAGNINQSLLTLGRCITALVEKTPHIPYRPLNS 89
E IN SL TLG I AL K H+PYR NS
Sbjct: 301 ETQAINSSLSTLGLVIMALSNKESHVPYR--NS 331
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 170 bits (432), Expect = 2e-51
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 31/174 (17%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITI------------------KERVNDKISKTFGFDR 126
RP N+ E+AA +V + F FD
Sbjct: 19 RPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDA 78
Query: 127 VFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDD 186
VF + S Q +V+++ P++ L+GYNCTV AYG TG GKT TM G D+
Sbjct: 79 VFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS---------ADE 129
Query: 187 PLSGIVPRAMNHLFDEL-RLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 239
P G++ M HL+ + + + + VS+LE+YNE++ DLL + + +R
Sbjct: 130 P--GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPL-AVR 180
Score = 145 bits (368), Expect = 5e-42
Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA SSRSH +F I + +D + + +R K++L+DLAGSE SGA+ R E N
Sbjct: 221 MNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTN 280
Query: 61 INQSLLTLGRCITALVE---KTPHIPYRPLNSV 90
IN+SLL LG I AL + K HIPYR NS
Sbjct: 281 INRSLLALGNVINALADSKRKNQHIPYR--NSK 311
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 170 bits (433), Expect = 2e-51
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESK--------QVD 136
RP NS E + S I+ S S + + + K+F FD + + Q
Sbjct: 13 RPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQ 72
Query: 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 196
VY+ + ++ GYN +FAYGQTG GK++TM G+ Q+ GI+P+
Sbjct: 73 VYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK---------QEKDQQGIIPQLC 123
Query: 197 NHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
LF + + ++V VS++EIY E + DLL+P + LR++
Sbjct: 124 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-GNLRVR 169
Score = 130 bits (329), Expect = 3e-36
Identities = 42/103 (40%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 1 MNAHSSRSHTIFTITI-HIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAG 59
MN SSRSH +F I + ++ + K++LVDLAGSE +GA+ R +E
Sbjct: 210 MNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGA 269
Query: 60 NINQSLLTLGRCITALVE------------KTPHIPYRPLNSV 90
NIN+SL TLG+ I+AL E KT IPYR +SV
Sbjct: 270 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR--DSV 310
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 166 bits (423), Expect = 2e-50
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 85 RPLNSVERAAKSCSIV-----DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYK 139
RP + + I D S + + + + N F FD++F Q+ VDV+K
Sbjct: 12 RPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFK 71
Query: 140 YVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 199
V L+ L GYN +FAYGQTG+GKTFTM P GI+P ++H+
Sbjct: 72 EV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN-------------PGDGIIPSTISHI 117
Query: 200 FDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDD 234
F+ + L ++ V F+EIYNE ++DLL ++
Sbjct: 118 FNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNN 154
Score = 131 bits (332), Expect = 7e-37
Identities = 43/92 (46%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
N HSS SH+IF I + N+ G G LNLVDLAGSE I S R RE N
Sbjct: 210 SNEHSSASHSIFIIHLSGS-NAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQN 266
Query: 61 INQSLLTLGRCITALVE---KTPHIPYRPLNS 89
IN+SL LG I AL + HIP+R NS
Sbjct: 267 INKSLSCLGDVIHALGQPDSTKRHIPFR--NS 296
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 167 bits (425), Expect = 5e-50
Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 21/157 (13%)
Query: 85 RPLNSVERAAKSCSIV-----DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYK 139
RP + + I D S + + + + N F FD++F Q+ VDV+K
Sbjct: 68 RPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFK 127
Query: 140 YVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 199
V L+ L GYN +FAYGQTG+GKTFTM P GI+P ++H+
Sbjct: 128 EV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLN-------------PGDGIIPSTISHI 173
Query: 200 FDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDD 234
F+ + L ++ V F+EIYNE ++DLL ++
Sbjct: 174 FNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNN 210
Score = 132 bits (335), Expect = 8e-37
Identities = 44/92 (47%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
N HSSRSH+IF I + N+ G G LNLVDLAGSE I S R RE N
Sbjct: 266 SNEHSSRSHSIFIIHLSGS-NAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQN 322
Query: 61 INQSLLTLGRCITALVE---KTPHIPYRPLNS 89
IN+SL LG I AL + HIP+R NS
Sbjct: 323 INKSLSALGDVIHALGQPDSTKRHIPFR--NS 352
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 166 bits (422), Expect = 5e-50
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 27/173 (15%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR------EITIKERVNDKISKTFGFDRVF--------SQ 130
RP+N E + +VD +++ + + K F +D F +
Sbjct: 10 RPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEK 69
Query: 131 ESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSG 190
+ Q V+K + ++ GYN +FAYGQTG+GK++TM G G
Sbjct: 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG-----------TADQPG 118
Query: 191 IVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLK 241
++PR + LF+ + + F V VS++EIYNE++ DLL P L+++
Sbjct: 119 LIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVR 171
Score = 132 bits (335), Expect = 4e-37
Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 9/97 (9%)
Query: 1 MNAHSSRSHTIFTITI-HIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAG 59
MN SSRSH +F IT+ H + G + GKL+LVDLAGSE ++GA R +E
Sbjct: 212 MNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGS 271
Query: 60 NINQSLLTLGRCITALVE------KTPHIPYRPLNSV 90
NIN+SL TLG I+AL + K +PYR +SV
Sbjct: 272 NINKSLTTLGLVISALADQSAGKNKNKFVPYR--DSV 306
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 164 bits (418), Expect = 2e-49
Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 20/165 (12%)
Query: 85 RPLNSVERAAKSCSIV----DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKY 140
RP E S ++ + ++ +TI +S F FD +F ++++
Sbjct: 14 RPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEE 73
Query: 141 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLF 200
+ L+ L GYN +FAYGQTG+GKT+TM G++P ++H+F
Sbjct: 74 I-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLN-------------AGDGMIPMTLSHIF 119
Query: 201 DELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
L + + + ++EIYNE ++DLL + +
Sbjct: 120 KWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILD 164
Score = 125 bits (315), Expect = 2e-34
Identities = 43/93 (46%), Positives = 52/93 (55%), Gaps = 8/93 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
N SSRSH++F + I+ + N GE GKLNLVDLAGSE I S +R RE N
Sbjct: 213 SNERSSRSHSVFMVHINGR-NLHTGET--SQGKLNLVDLAGSERINSSAVTGERLRETQN 269
Query: 61 INQSLLTLGRCITALVEK---TPHIPYRPLNSV 90
IN+SL LG I AL +IP+R NS
Sbjct: 270 INKSLSCLGDVIYALNTPDAGKRYIPFR--NSK 300
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 159 bits (403), Expect = 2e-46
Identities = 46/185 (24%), Positives = 72/185 (38%), Gaps = 39/185 (21%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITI--------------KERVNDKISKTFGFDRVF-- 128
R E + IV+ + E T K+F FD+ F
Sbjct: 47 RAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWS 106
Query: 129 -----SQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISW 183
+ Q VY + +D GY+ +FAYGQTG+GK++TM G
Sbjct: 107 HNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQ------ 160
Query: 184 QDDPLSGIVPRAMNHLFDELRLL----GDAEFTVRVSFLEIYNEELIDLLSPTDDITK-- 237
G++PR LF + + + V+VS+ E+YNE + DLL+P
Sbjct: 161 -----PGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPY 215
Query: 238 -LRLK 241
L+++
Sbjct: 216 YLKVR 220
Score = 125 bits (317), Expect = 4e-34
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 25/113 (22%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLD-GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAG 59
MN SSRSH +FTI + + L+ + R+ ++ LVDLAGSE + A +R RE
Sbjct: 261 MNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGS 320
Query: 60 NINQSLLTLGRCITALVE----------------------KTPHIPYRPLNSV 90
NIN+SL TLGR I AL + +PYR +SV
Sbjct: 321 NINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYR--DSV 371
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 52.3 bits (126), Expect = 3e-09
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 58 AGNINQSLLTLGRCITALVE-KTPHIPYR 85
A NIN+SL LG I+AL E H+PYR
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYR 29
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 45.0 bits (107), Expect = 1e-06
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 62 NQSLLTLGRCITALVE-KTPHIPYR 85
N+SL LG I+AL E H+PYR
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYR 25
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 5e-06
Identities = 30/215 (13%), Positives = 64/215 (29%), Gaps = 66/215 (30%)
Query: 77 EKTPHIPYRPLNSVERAAKSCSIVDC-SSSREITIKERVNDKISKTFGF--DRVFSQESK 133
E+ HI ++V + + S +E +++ V + + + F E +
Sbjct: 49 EEIDHIIMSK-DAVSGTLR---LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQR 103
Query: 134 Q----VDVYKYVVNPLID--EVLSGYNCT--------------------VFAYGQTGTGK 167
Q +Y + L + +V + YN + V G G+GK
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 168 TFTMEGEKSNDPS--------ISW-----QDDPLSGIVP-RAMNHLFD-ELRLLGDAEFT 212
T + + I W + P + + + + + D D
Sbjct: 164 T-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 213 VRVSFLEI------------YNEELIDLLSPTDDI 235
+++ I Y L+ L ++
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVL----LNV 253
Score = 35.2 bits (80), Expect = 0.019
Identities = 48/273 (17%), Positives = 93/273 (34%), Gaps = 57/273 (20%)
Query: 4 HSSRSHTIFTITIHIKDNSLDGEELLRTGKLN--LVDLAGSENIGRSGAQDKRAREAGNI 61
+SRS I + I + LL++ L+ L N+ Q+ +A A N+
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNV-----QNAKAWNAFNL 264
Query: 62 N-QSLL-TLGRCITALV--EKTPHIPYRPLNSVERAAKSCSI----VDCSSS---REIT- 109
+ + LL T + +T + T HI + + S+ +DC RE+
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 110 --------IKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY--NCTVFA 159
I E + D ++ + V K + + +N L +VF
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 160 YGQTGTGKTFTM---EGEKSNDPSI-----------SWQDDPLSGIVPRAMNHLFDELRL 205
++ + KS+ + + I ++ EL++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSIYLELKV 437
Query: 206 LGDAEFTVRVSFLEIYNE----ELIDLLSPTDD 234
+ E+ + S ++ YN + DL+ P D
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 3e-05
Identities = 45/264 (17%), Positives = 80/264 (30%), Gaps = 82/264 (31%)
Query: 1 MNAHSSR----SHTIFTITIHIKDNSLDGEELLR---TGKLNLVDLAGSENIGRSGAQDK 53
M+A+S+R SH + + S L+ L +E A D
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP----EPTEGF----AAD- 51
Query: 54 RAREAGNINQSLLT--LGRCITALVEKTPHIPYRP-----LNSVERA--------AKSCS 98
+ L+ LG +++LVE + + L E A +
Sbjct: 52 ---DEPTTPAELVGKFLGY-VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 99 IVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSG----YN 154
++ + + + KE + + I+ R F ++S + L V G
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN---------SALFRAVGEGNAQLV- 157
Query: 155 CTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVR 214
+F GQ G + F+ELR L +
Sbjct: 158 -AIFG-GQ-GNTDDY------------------------------FEELRDLYQTYHVLV 184
Query: 215 VSFLEIYNEELIDLLSPTDDITKL 238
++ E L +L+ T D K+
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKV 208
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 31.3 bits (71), Expect = 0.22
Identities = 10/74 (13%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 102 CSSSREITIKERVN----DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTV 157
+ ++ I ER+ K + + + +++ + +++ +++ S +
Sbjct: 97 VEAQKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILD-FVEQYPSAEQKGL 155
Query: 158 FAYGQTGTGKTFTM 171
+ YG G GK++ +
Sbjct: 156 YLYGDMGIGKSYLL 169
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 30.2 bits (69), Expect = 0.56
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 161 GQTGTGKTFTM 171
G TGTGKTFT+
Sbjct: 39 GATGTGKTFTV 49
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 30.2 bits (69), Expect = 0.58
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 161 GQTGTGKTFTM 171
G TGTGKT TM
Sbjct: 35 GATGTGKTVTM 45
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 29.8 bits (66), Expect = 0.77
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 133 KQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 171
+Q+ ++ + Y G+ GTGKT T+
Sbjct: 24 QQLQQLDILLGNWLRNPGHHYPR-ATLLGRPGTGKTVTL 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 28.1 bits (63), Expect = 1.8
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 1/50 (2%)
Query: 120 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTF 169
D + Q + + + G G GKT
Sbjct: 5 WNANLDTYHPKNVSQNRALLTIRV-FVHNFNPEEGKGLTFVGSPGVGKTH 53
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 28.1 bits (63), Expect = 2.3
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 110 IKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTF 169
I+ + V + ++ ++ + + ++ +G G GKT+
Sbjct: 10 IQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY 69
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 27.9 bits (62), Expect = 2.7
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFT 170
+ L G N + TG+GKT
Sbjct: 41 VAQPALEGKNIIICL--PTGSGKTRV 64
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 27.9 bits (63), Expect = 3.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 146 IDEVLSGYNCTVFAYGQTGTGKT 168
+ +LS + Q+GTGKT
Sbjct: 150 LPLLLSNPPRNMIGQSQSGTGKT 172
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 27.6 bits (60), Expect = 3.9
Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 105 SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTG 164
+ +I ++E + + + K + + SQ ++ + + L+ N +
Sbjct: 3 NADINLEESIRESLQKR---ELLKSQVEDFTRIFLPIYDSLMS----SQNKLFYITNADD 55
Query: 165 TGKTFTME 172
+ K +
Sbjct: 56 STKFQLVN 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 27.3 bits (60), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 133 KQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 172
Q+ ++ PL E +F YG TGTGKT ++
Sbjct: 27 DQIRKIASILAPLYREEKPN---NIFIYGLTGTGKTAVVK 63
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 26.7 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 146 IDEVLSGYNCTVFAYGQTGTGKT 168
I +LS + V A +TGTGKT
Sbjct: 52 IKPILSSEDHDVIARAKTGTGKT 74
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 26.7 bits (60), Expect = 8.0
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 146 IDEVLSGYNCTVFAYGQTGTGKT 168
I +L G N V +TG+GKT
Sbjct: 25 IPLMLQGKN--VVVRAKTGSGKT 45
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 26.3 bits (59), Expect = 8.5
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 146 IDEVLSGYNCTVFAYGQTGTGKT 168
+ L G + + +TGTGKT
Sbjct: 32 LPLALEGKD--LIGQARTGTGKT 52
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 26.5 bits (58), Expect = 9.8
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 147 DEVLSGYNCTVFAYGQTGTGKTFTM 171
+ N T+ + G GK+FT
Sbjct: 30 GGDRTNSNWTIL--AKPGAGKSFTA 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,723,106
Number of extensions: 221332
Number of successful extensions: 642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 80
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)