RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9445
(243 letters)
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 121 bits (304), Expect = 2e-33
Identities = 80/156 (51%), Positives = 112/156 (71%), Gaps = 4/156 (2%)
Query: 85 RPLNSVERAAKSCSIVDCSSSR-EITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYV 141
RP N ER A + SIV+C R E++++ + KT+ FD VF +KQ+DVY+ V
Sbjct: 9 RPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSV 68
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
V P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F
Sbjct: 69 VCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIF- 127
Query: 202 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 237
E EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 128 EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSE 163
Score = 81.2 bits (199), Expect = 1e-18
Identities = 68/85 (80%), Positives = 81/85 (95%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MNA+SSRSH++F++TIH+K+ ++DGEEL++ GKLNLVDLAGSENIGRSGA DKRAREAGN
Sbjct: 211 MNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 270
Query: 61 INQSLLTLGRCITALVEKTPHIPYR 85
INQSLLTLGR ITALVE+TPH+PYR
Sbjct: 271 INQSLLTLGRVITALVERTPHVPYR 295
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 109 bits (273), Expect = 4e-29
Identities = 53/160 (33%), Positives = 79/160 (49%), Gaps = 16/160 (10%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPLN E I + I SK + FDRVF + Q VY
Sbjct: 14 RPLNESEVNRGDKYIAKFQGEDTVVIA-------SKPYAFDRVFQSSTSQEQVYNDCAKK 66
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
++ +VL GYN T+FAYGQT +GKT TMEG+ + + GI+PR + +F+ +
Sbjct: 67 IVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM--------GIIPRIVQDIFNYIY 118
Query: 205 LLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
+ + EF ++VS+ EIY +++ DLL + + KN
Sbjct: 119 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKN 158
Score = 77.2 bits (189), Expect = 3e-17
Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 10/114 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN HSSRSH+IF I + ++ + + +GKL LVDLAGSE + ++GA+ EA N
Sbjct: 195 MNEHSSRSHSIFLINVKQENTQTEQK---LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKN 251
Query: 61 INQSLLTLGRCITALVEKTPHIPYR--PL-----NSVERAAKSCSIVDCSSSRE 107
IN+SL LG I+AL E + ++PYR + +S+ ++ ++ CS S
Sbjct: 252 INKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSY 305
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 105 bits (263), Expect = 2e-27
Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 11/156 (7%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RP N VE + IV T+ + + +F FDRVF KQ D++ + + P
Sbjct: 14 RPQNRVEIESGGQPIVTFQGPDTCTVDSK---EAQGSFTFDRVFDMSCKQSDIFDFSIKP 70
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 204
+D++L+GYN TVFAYGQTG GK++TM G +DP G++PR + +F +
Sbjct: 71 TVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG-------RGVIPRIVEQIFTSIL 123
Query: 205 LL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 239
+ E+TVRVS++EIY E + DLL+P +D +
Sbjct: 124 SSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVH 159
Score = 63.4 bits (153), Expect = 2e-12
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 28/144 (19%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH+IF ITI K+ ++G+L LVDLAGSE +G++GA + EA
Sbjct: 200 MNQESSRSHSIFVITITQKNVETGSA---KSGQLFLVDLAGSEKVGKTGASGQTLEEAKK 256
Query: 61 INQSLLTLGRCITALVE-KTPHIPYR--PL-----NSVERAAKSCSIVDCSSS------- 105
IN+SL LG I AL + K+ H+PYR L S+ +++ I++CS S
Sbjct: 257 INKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAET 316
Query: 106 ----------REITIKERVNDKIS 119
+ I K +VN ++S
Sbjct: 317 LSTLRFGMRAKSIKNKAKVNAELS 340
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 105 bits (261), Expect = 2e-27
Identities = 50/167 (29%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVY 138
RPL+ +E+ K I+ ++ + I E F D+VF VY
Sbjct: 9 RPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVY 68
Query: 139 KYVVNPLIDEVL-SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 197
+ + PLI ++ +G C+ FAYGQTG+GKT+TM G + S + GI A
Sbjct: 69 ENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP------GIFQYAAG 122
Query: 198 HLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
+F L + D + +SF EIY +L DLL + L K
Sbjct: 123 DIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKK 169
Score = 74.3 bits (181), Expect = 3e-16
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAR-EAG 59
N SSRSH I I + D + GK+ +DLAGSE + +Q+K+ + +
Sbjct: 205 QNDESSRSHAILNIDLK------DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGA 258
Query: 60 NINQSLLTLGRCITALVEKTPHIPYR 85
NIN+SLL L CI A+ HIP+R
Sbjct: 259 NINRSLLALKECIRAMDSDKNHIPFR 284
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 97.7 bits (242), Expect = 1e-24
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVD-------- 136
RP NS E + S I+ S S + + + K+F FD + + D
Sbjct: 10 RPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQ 69
Query: 137 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 196
VY+ + ++ GYN +FAYGQTG GK++TM G Q+ GI+P+
Sbjct: 70 VYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG---------KQEKDQQGIIPQLC 120
Query: 197 NHLFD--ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD 233
LF + ++V VS++EIY E + DLL+P +
Sbjct: 121 EDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 159
Score = 67.7 bits (164), Expect = 7e-14
Identities = 41/98 (41%), Positives = 53/98 (54%), Gaps = 13/98 (13%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLD-GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAG 59
MN SSRSH +F I K + + + K++LVDLAGSE +GA+ R +E
Sbjct: 207 MNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGA 266
Query: 60 NINQSLLTLGRCITALVE------------KTPHIPYR 85
NIN+SL TLG+ I+AL E KT IPYR
Sbjct: 267 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYR 304
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 96.5 bits (239), Expect = 4e-24
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVY 138
RPLN E A K ++ S + + E ++ F FD F + + VY
Sbjct: 39 RPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVY 98
Query: 139 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 198
++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 99 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK-----SQNASKGIYAMASRD 153
Query: 199 LFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSP 231
+F + V V+F EIYN ++ DLL+
Sbjct: 154 VFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 188
Score = 71.5 bits (174), Expect = 4e-15
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRS-GAQDKRAREAG 59
N++SSRSH F I + K GK +LVDLAG+E + A + E
Sbjct: 236 ANSNSSRSHACFQILLRTKGR--------LHGKFSLVDLAGNERGADTSSADRQTRMEGA 287
Query: 60 NINQSLLTLGRCITALVEKTPHIPYR 85
IN+SLL L CI AL + H P+R
Sbjct: 288 EINKSLLALKECIRALGQNKAHTPFR 313
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 87.0 bits (214), Expect = 1e-20
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 144
RPL E AK + + E T++ D +K +DRVF + Q DV++
Sbjct: 9 RPLCEKEIIAKERNAIRSVD--EFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTK-Y 65
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL- 203
L+ + GYN +FAYGQTG+GKTFT+ G SN PRAM+ LF +
Sbjct: 66 LVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLT-----------PRAMSELFRIMK 114
Query: 204 RLLGDAEFTVRVSFLEIYNEELIDLLSPTDD 234
+ F+++ +E+Y + L+DLL P
Sbjct: 115 KDSNKFSFSLKAYMVELYQDTLVDLLLPKQA 145
Score = 58.1 bits (139), Expect = 1e-10
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 10/114 (8%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
MN SSRSH I ++ I + + + GKL+ VDLAGSE + +SG+ + +EA +
Sbjct: 194 MNEQSSRSHLIVSVIIESTN---LQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQS 250
Query: 61 INQSLLTLGRCITALVEKTPHIPYRPL-------NSVERAAKSCSIVDCSSSRE 107
IN+SL LG I+AL HIPYR +S+ AK+ V+ S +
Sbjct: 251 INKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAES 304
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 84.6 bits (208), Expect = 9e-20
Identities = 57/164 (34%), Positives = 82/164 (50%), Gaps = 17/164 (10%)
Query: 85 RPLNSVERAAKSCSIVDCSSSREITIKERVNDK---ISKTFGFDRVFSQESKQVDVYKYV 141
RP E C+ S K + F FD+VF S Q D+++ V
Sbjct: 54 RPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV 113
Query: 142 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 201
+PLI L GYN +FAYGQTG+GKT+TM+G + G++PR ++ LFD
Sbjct: 114 -SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV-----------GVIPRTVDLLFD 161
Query: 202 ELRLLGDAEFT--VRVSFLEIYNEELIDLLSPTDDITKLRLKKN 243
+R + + ++ +FLEIYNE L DLLS ++R+ KN
Sbjct: 162 SIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKN 205
Score = 73.0 bits (178), Expect = 1e-15
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
N SSRSH + + + + ++ + G +NLVDLA S R E N
Sbjct: 244 GNERSSRSHAVTKLELIGRH---AEKQEISVGSINLVDLA----GSESPKTSTRMTETKN 296
Query: 61 INQSLLTLGRCITALVEKTPHIPYR--PL-----NSVERAAKSCSIVDCSSSRE 107
IN+SL L I AL++K HIPYR L S+ +K+ ++ S ++
Sbjct: 297 INRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQD 350
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 82.4 bits (202), Expect = 5e-19
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 21/157 (13%)
Query: 85 RPLNSVERAAKSCSIV-----DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYK 139
RP + + I D S + + + + N F FD++F Q+ VDV+K
Sbjct: 10 RPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFK 69
Query: 140 YVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 199
V L+ L GYN +FAYGQTG+GKTFTM +P GI+P ++H+
Sbjct: 70 EVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM-------------LNPGDGIIPSTISHI 115
Query: 200 FDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTDD 234
F+ + L ++ V F+EIYNE ++DLL ++
Sbjct: 116 FNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNN 152
Score = 70.8 bits (172), Expect = 5e-15
Identities = 39/88 (44%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 1 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGN 60
N HSS SH+IF I + + G LNLVDLAGSE I S R RE N
Sbjct: 208 SNEHSSASHSIFIIHLSGSNAKTGAH---SYGTLNLVDLAGSERINVSQVVGDRLRETQN 264
Query: 61 INQSLLTLGRCITALVE---KTPHIPYR 85
IN+SL LG I AL + HIP+R
Sbjct: 265 INKSLSCLGDVIHALGQPDSTKRHIPFR 292
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.6 bits (60), Expect = 1.4
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 145 LIDEVLSGYNCTVFAYGQTGTGKT 168
+ D++ T+ G GKT
Sbjct: 1 IEDDIFRKKRLTIMD-LHPGAGKT 23
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 26.9 bits (59), Expect = 1.8
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 177 NDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTV 213
+P ++ D+P SG+ + L+ T+
Sbjct: 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 186
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.9 bits (59), Expect = 2.5
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 177 NDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTV 213
+P + D+P++G+ P + +F+ + L T
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF 203
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 25.4 bits (55), Expect = 3.6
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 151 SGYNCTVFAYGQTGTGKTFTMEGEKS 176
SG TV+ + T TF+++
Sbjct: 6 SGMLITVYCVRRDLTEVTFSLQVNPD 31
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 25.3 bits (55), Expect = 6.6
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 154 NCTVFAYGQTGTGK-TFTMEGEKS--NDPSISWQDDPLSGIVPRAMNHLFD 201
+ VF +G +GTGK T + + E+ D W +D + +
Sbjct: 15 DVAVF-FGLSGTGKTTLSTDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIR 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 897,125
Number of extensions: 41035
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 25
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)