RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9446
(174 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 78.4 bits (194), Expect = 9e-18
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 71 VIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGHI 130
+ E V G + +E L L+YL +V+KE+LRL+P R +E++ + G
Sbjct: 280 LQAEVDEVIGSKRY---LDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVR 336
Query: 131 LAPAKTKCQL 140
+ P T
Sbjct: 337 V-PGNTPLLF 345
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 77.0 bits (190), Expect = 3e-17
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 70 QVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGH 129
+I+E V G + +Q+LK ++ I E++R P V ++ R +D+ + G+
Sbjct: 331 AIIKEIQTVIGERD----IKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVIDGY 386
Query: 130 ILAPAKTKCQL 140
+ T L
Sbjct: 387 PV-KKGTNIIL 396
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 71.5 bits (176), Expect = 3e-15
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 61 TSTITI------------ILLQVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLR 108
TS+ T + + E V G TY+QL++L LD+ IKETLR
Sbjct: 267 TSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPP--LTYDQLKDLNLLDRCIKETLR 324
Query: 109 LFPAVPILGRNIEKDENVGGHILAPAKTKC 138
L P + I+ R + V G+ + P +
Sbjct: 325 LRPPIMIMMRMARTPQTVAGYTI-PPGHQV 353
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 70.4 bits (173), Expect = 6e-15
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 73 QETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGHILA 132
+E V P+Y+Q+++LKY+ V+ E LRL+P P ++D +GG
Sbjct: 292 EEAARVLV----DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPL 347
Query: 133 PAKTKC 138
+
Sbjct: 348 EKGDEL 353
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 70.0 bits (172), Expect = 9e-15
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 71 VIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGHI 130
++QE +V Q P E L+ + YL +KE++RL P+VP R ++K +G +
Sbjct: 320 LLQEVQSVLPDN---QTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLGEYA 376
Query: 131 LAPAKT 136
L P T
Sbjct: 377 L-PKGT 381
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 70.0 bits (172), Expect = 9e-15
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 61 TSTITI------------ILLQVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLR 108
TS+ T VI E ++G ++ L+++ L+ V+KETLR
Sbjct: 260 TSSGTASWTLIELMRHRDAYAAVIDELDELYGDGRS---VSFHALRQIPQLENVLKETLR 316
Query: 109 LFPAVPILGRNIEKDENVGGHILAPAKT 136
L P + IL R + + V GH +
Sbjct: 317 LHPPLIILMRVAKGEFEVQGHRI-HEGD 343
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 69.6 bits (171), Expect = 1e-14
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 70 QVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGH 129
++ E AV G +E +++L++ VI E +RL PAV +L R + +GG+
Sbjct: 299 RIRDEVEAVTGGRP----VAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELGGY 354
Query: 130 ILAPAKTKCQL 140
+ PA
Sbjct: 355 RI-PAGADIIY 364
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 69.3 bits (170), Expect = 1e-14
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 70 QVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGH 129
+ E LA LQ + L IKETLRL P L R + D + +
Sbjct: 311 MLRAEVLAARHQAQG---DMATMLQLVPLLKASIKETLRLHPISVTLQRYLVNDLVLRDY 367
Query: 130 ILAPAKTKCQL 140
++ PAKT Q+
Sbjct: 368 MI-PAKTLVQV 377
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 68.0 bits (166), Expect = 4e-14
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 70 QVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGH 129
++ +E +V G T +++++ V+ E LR P V +KD + H
Sbjct: 320 RLAEEIRSVIKSNG--GELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESH 377
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 68.0 bits (166), Expect = 5e-14
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 70 QVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGH 129
Q+ +E G T E ++++ V+ E+LR+ P VP + + + H
Sbjct: 302 QLAEEIRGAIKSYGDGN-VTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESH 360
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 66.9 bits (164), Expect = 1e-13
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 71 VIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGHI 130
+ +E + E+ + ++ +E++R P + +L R + D VG ++
Sbjct: 292 LRKEIEEFPAQL-----NYNNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKVGSYV 346
Query: 131 LAPAKTKC 138
+ P
Sbjct: 347 V-PKGDII 353
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 63.4 bits (155), Expect = 2e-12
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 72 IQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKD 123
I L P PTY+ + +++YLD V+ ETLRLFP L R +KD
Sbjct: 313 IDAVLPNKAP------PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKD 358
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 61.2 bits (149), Expect = 8e-12
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 67 ILLQVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENV 126
I +V QE + + LT E L+++ YLD+V++E LRL P V R + +D
Sbjct: 276 IRERVRQEQNKLQLSQELT----AETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQF 331
Query: 127 GGHILAPAKTK 137
G P
Sbjct: 332 QGFHF-PKGWL 341
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 58.2 bits (141), Expect = 1e-10
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 91 EQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGHILAPAKTK 137
+Q+ Y + ++E R +P P + +D G P +
Sbjct: 266 ALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAF-PEGRQ 311
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 58.2 bits (141), Expect = 1e-10
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 68 LLQVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENV- 126
+ + ++ EG C + +L +L LD +IKE+LRL A + R ++D +
Sbjct: 298 VKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNI-RTAKEDFTLH 356
Query: 127 ---GGHILAPAKTK 137
G + +
Sbjct: 357 LEDGSYNI-RKDDI 369
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 56.0 bits (135), Expect = 6e-10
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 67 ILLQVIQETLAVFG----PEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEK 122
L V E ++ P T + L LD V+ E+LRL P + R +
Sbjct: 295 ALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTA-APFITREVVV 353
Query: 123 D 123
D
Sbjct: 354 D 354
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 53.9 bits (130), Expect = 3e-09
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 55 QNGAVLTSTITIILLQVI---QETLAV---FGPEGLTQCPT-YEQLQE--LKYLDKVIKE 105
++G+ L S + I L + ++ F L + P E L+ + + ++E
Sbjct: 223 EDGSQLDSRMAAIELINVLRPIVAISYFLVFSALALHEHPKYKEWLRSGNSREREMFVQE 282
Query: 106 TLRLFPAVPILGRNIEKDENVGGHILAPAKTK 137
R +P P LG ++KD T
Sbjct: 283 VRRYYPFGPFLGALVKKDFVWNNCEF-KKGTS 313
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 48.8 bits (117), Expect = 2e-07
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 82 EGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPILGRNIEKDENV 126
+G E+ + D V+ ETLRL A I R++ +D+ +
Sbjct: 295 QGGKHLRLEERQKNTPVFDSVLWETLRLTAAALIT-RDVTQDKKI 338
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 48.8 bits (117), Expect = 2e-07
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 84 LTQCPTYEQ--LQELKYLDKVIKETLRLFPAVPILGRNIEKDENVGGHILAPAKT 136
L+ P +++ + + +E LRL+P IL R +E+ +G L P T
Sbjct: 237 LSHRPDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRL-PPGT 290
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.010
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 9/35 (25%)
Query: 91 EQLQELKYLDKVIKETLRLF-P-AVPILGRN--IE 121
E+ Q LK L +L+L+ + P L +E
Sbjct: 18 EK-QALKKLQA----SLKLYADDSAPALAIKATME 47
Score = 25.3 bits (54), Expect = 9.1
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 14/38 (36%)
Query: 121 EKDENVGGHILAPAKTKCQLKAITPD--P----RADCE 152
EK + K + LK D P +A E
Sbjct: 18 EKQA-----L---KKLQASLKLYADDSAPALAIKATME 47
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 33.0 bits (76), Expect = 0.038
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 72 IQETL-AVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI 115
+QE L GP TY+ L L+ I E LRL P VP+
Sbjct: 316 LQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPL 360
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 28.2 bits (62), Expect = 1.3
Identities = 9/66 (13%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 9 MVEVVEEKEKFRWSSFFLLYDFETSPKPGSENLDSRNQSSGVRSHIQNGAVLTSTITIIL 68
M+ ++EE + W F ++ + + + S ++S V ++ +L ++
Sbjct: 127 MLNIMEE---YDWYIFSIVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGD 183
Query: 69 LQVIQE 74
++ +
Sbjct: 184 SKIQNQ 189
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex
(hydrolase- immunoglobulin) complex; HET: NAG BMA MAN;
2.20A {Influenza a virus} SCOP: b.68.1.1
Length = 470
Score = 28.4 bits (63), Expect = 1.3
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 1/86 (1%)
Query: 57 GAV-LTSTITIILLQVIQETLAVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI 115
A L +L+ ++ L + + + Q + +I I
Sbjct: 11 SATALVIGTIAVLIGIVNLGLNIGLHLKPSCNCSRSQPEATNASQTIINNYYNETNITQI 70
Query: 116 LGRNIEKDENVGGHILAPAKTKCQLK 141
NI+ +E K C +
Sbjct: 71 SNTNIQVEERASREFNNLTKGLCTIN 96
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 28.3 bits (64), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 83 GLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI 115
G ++ PT L L+ I+E LRL P P+
Sbjct: 319 GFSRTPTISDRNRLLLLEATIREVLRLRPVAPM 351
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 27.6 bits (62), Expect = 2.6
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 83 GLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI 115
G + P L Y+ + E +R VP+
Sbjct: 325 GRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPV 357
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase;
1.70A {Metagenomes}
Length = 339
Score = 27.4 bits (61), Expect = 2.8
Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
G G+TQ P TY+
Sbjct: 74 GVPGVTQQPIEAGDSYTYK 92
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 27.1 bits (61), Expect = 3.7
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 72 IQETL-AVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI-LGRNIEKDENVGGH 129
IQ+ L V G E + P +L YL+ I ET R +P + + +D + G
Sbjct: 319 IQKELDTVIGRE---RRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGF 375
Query: 130 ILAPAKT 136
+ P K
Sbjct: 376 YI-PKKC 381
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal
B protein; 1.90A {Nitrosomonas europaea}
Length = 318
Score = 26.6 bits (59), Expect = 4.4
Identities = 5/19 (26%), Positives = 6/19 (31%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
G TQ TY+
Sbjct: 73 GVPHATQHAIEPGDTFTYK 91
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 26.8 bits (60), Expect = 4.8
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 72 IQETL-AVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI 115
+Q+ + + GP P+++ ++ Y + V+ E LR VP+
Sbjct: 310 VQKEIDLIMGPN---GKPSWDDKCKMPYTEAVLHEVLRFCNIVPL 351
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 26.6 bits (59), Expect = 5.0
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
G G+TQCP TY+
Sbjct: 138 GVPGVTQCPIAPGDTLTYK 156
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG;
1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Length = 552
Score = 26.5 bits (59), Expect = 5.0
Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
G ++QC Y
Sbjct: 74 GTASISQCAINPGETFFYN 92
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus
lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Length = 521
Score = 26.5 bits (59), Expect = 5.0
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
GP + QCP Y+
Sbjct: 99 GPAFVNQCPIIPNESFVYD 117
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 26.5 bits (59), Expect = 5.3
Identities = 7/19 (36%), Positives = 7/19 (36%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
G LTQCP Y
Sbjct: 74 GVPFLTQCPIAPGSTMLYN 92
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 26.4 bits (59), Expect = 5.6
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 72 IQETL-AVFGPEGLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI 115
+Q+ + V G + P + Y VI E R VP+
Sbjct: 309 VQQEIDDVIGQV---RRPEMGDQAHMPYTTAVIHEVQRFGDIVPL 350
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A
{Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A*
3t71_A*
Length = 495
Score = 26.5 bits (59), Expect = 5.8
Identities = 7/19 (36%), Positives = 9/19 (47%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
GP +TQCP +Y
Sbjct: 79 GPAFITQCPIIVGNSFSYN 97
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2
copper depleted, signal, glycoprotein; HET: MAN NAG
NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3
b.6.1.3 PDB: 1a65_A*
Length = 503
Score = 26.5 bits (59), Expect = 5.9
Identities = 6/19 (31%), Positives = 9/19 (47%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
G +G+ QCP Y+
Sbjct: 78 GADGVNQCPISPGHAFLYK 96
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 26.2 bits (58), Expect = 6.5
Identities = 6/25 (24%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 87 CPTYEQLQELKYLDKVIKETLRLFP 111
P E ++++ VI E + P
Sbjct: 313 MPRAEIT--YQFVEDVISELAAISP 335
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 26.1 bits (58), Expect = 6.7
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 7/19 (36%)
Query: 80 GPEGLTQCP-------TYE 91
GP + QCP Y+
Sbjct: 78 GPAFINQCPISPGHSFLYD 96
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 26.2 bits (58), Expect = 6.8
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 80 GPEGLTQCP 88
G G+T+CP
Sbjct: 107 GANGVTECP 115
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 26.0 bits (58), Expect = 8.7
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 83 GLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI 115
G + P + + Y D V+ E R +P
Sbjct: 315 GRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPT 347
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 26.0 bits (58), Expect = 8.9
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 83 GLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI-LGRNIEKDENVGGHILAPAKT 136
G + P + ++ Y D VI E RL +P + + KD G+++ P T
Sbjct: 314 GSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVI-PKNT 367
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 26.0 bits (58), Expect = 9.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 83 GLTQCPTYEQLQELKYLDKVIKETLRLFPAVPI 115
G ++ P + QE+ Y+D V+ E R VP
Sbjct: 313 GPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPS 345
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 25.8 bits (57), Expect = 9.3
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 87 CPTYEQLQELKYLDKVIKETLRLFP 111
C + ++D VI E L P
Sbjct: 288 CVDKDVT--YDFVDDVIGELAALTP 310
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 25.7 bits (57), Expect = 9.7
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 91 EQLQELK----YLDKVIKETLRLFPAVPILGRNIEKDENVGGH 129
EQ+ ++ + + I ETLR P V ++ R + +D VGG
Sbjct: 290 EQMNDVLADRSLVPRAIAETLRYKPPVQLIPRQLSQDTVVGGM 332
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.382
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,528,268
Number of extensions: 135343
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 49
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.4 bits)