BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9448
(583 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 448 bits (1152), Expect = e-126, Method: Compositional matrix adjust.
Identities = 208/295 (70%), Positives = 260/295 (88%), Gaps = 2/295 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 135
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 136 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKM 319
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQK+
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQKL 369
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 117/155 (75%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 27 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 86
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F++
Sbjct: 87 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEK 146
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 147 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 447 bits (1150), Expect = e-126, Method: Compositional matrix adjust.
Identities = 208/294 (70%), Positives = 259/294 (88%), Gaps = 2/294 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 135
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 136 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQK
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 368
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 117/155 (75%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 27 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 86
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F++
Sbjct: 87 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEK 146
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 147 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 447 bits (1149), Expect = e-126, Method: Compositional matrix adjust.
Identities = 208/294 (70%), Positives = 259/294 (88%), Gaps = 2/294 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI
Sbjct: 75 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 134
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 135 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 193
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 194 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 253
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 254 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 313
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQK
Sbjct: 314 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 367
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 117/155 (75%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 26 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 85
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F++
Sbjct: 86 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEK 145
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 146 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 179
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/294 (70%), Positives = 259/294 (88%), Gaps = 2/294 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI
Sbjct: 78 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 137
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 138 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 196
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 197 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 256
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 257 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 316
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQK
Sbjct: 317 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 370
Score = 175 bits (444), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 117/155 (75%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 29 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 88
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F++
Sbjct: 89 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEK 148
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 149 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 182
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/294 (70%), Positives = 259/294 (88%), Gaps = 2/294 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI
Sbjct: 67 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 126
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 127 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 185
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 186 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 245
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 246 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 305
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQK
Sbjct: 306 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 359
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 117/155 (75%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 18 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 77
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F++
Sbjct: 78 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEK 137
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 138 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 171
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/294 (70%), Positives = 258/294 (87%), Gaps = 2/294 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL GI
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGI 135
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 136 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQK
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 368
Score = 174 bits (442), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 116/155 (74%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 27 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 86
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL GI+PR ++ +F++
Sbjct: 87 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGIIPRTLHQIFEK 146
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 147 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 207/294 (70%), Positives = 258/294 (87%), Gaps = 2/294 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++ PL+GI
Sbjct: 76 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGI 135
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 136 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQK
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 368
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 116/155 (74%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 27 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 86
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++ PL+GI+PR ++ +F++
Sbjct: 87 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGIIPRTLHQIFEK 146
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 147 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 442 bits (1138), Expect = e-124, Method: Compositional matrix adjust.
Identities = 206/293 (70%), Positives = 256/293 (87%), Gaps = 2/293 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYN T+FAYGQTGTGKTFTMEGE+S + W++DPL+GI
Sbjct: 76 TKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGI 135
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 136 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 194
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 195 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 254
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 255 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 314
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQ 317
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQ
Sbjct: 315 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 114/155 (73%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+ R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 27 PFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 86
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYN T+FAYGQTGTGKTFTMEGE+S + W++DPL+GI+PR ++ +F++
Sbjct: 87 APILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGIIPRTLHQIFEK 146
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 147 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 180
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 436 bits (1122), Expect = e-122, Method: Compositional matrix adjust.
Identities = 204/289 (70%), Positives = 254/289 (87%), Gaps = 2/289 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI
Sbjct: 61 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 120
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F++L G EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 121 IPRTLHQIFEKLTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 179
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 180 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 239
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 240 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 299
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRP 313
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+P
Sbjct: 300 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 117/155 (75%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKER-VNDKIS-KTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + DK S KT+ FD VF +KQ+DVY+ VV
Sbjct: 12 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 71
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F++
Sbjct: 72 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEK 131
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L G EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 132 LTDNG-TEFSVKVSLLEIYNEELFDLLNPSSDVSE 165
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 199/293 (67%), Positives = 253/293 (86%), Gaps = 3/293 (1%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DVY VV+PLI+EVL+GYNCTVFAYGQTGTGKT TM G ++ + SW+DD GI+PRA
Sbjct: 83 DVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRA 142
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
++HLFDELR++ + E+T+R+S+LE+YNEEL DLLS TDD TK+R+F+DS +KGSVIIQGL
Sbjct: 143 LSHLFDELRMM-EVEYTMRISYLELYNEELCDLLS-TDDTTKIRIFDDSTKKGSVIIQGL 200
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
EE VH+KD+VYK+LEKG ++R+TA TLMNA SSRSHT+F+I +HI++N ++GE++L+ G
Sbjct: 201 EEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIG 260
Query: 210 KLNLVDLAGSENIGRSGAQDK-RAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTR 268
KLNLVDLAGSEN+ ++G + R RE NINQSLLTLGR ITALV++ PH+PYRESKLTR
Sbjct: 261 KLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTR 320
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSK 321
LLQ+SLGGRTKTSIIAT+SP ++EETLSTL+YAHRAKNI N+PE+NQK++K
Sbjct: 321 LLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLTK 373
Score = 191 bits (485), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/154 (58%), Positives = 117/154 (75%), Gaps = 2/154 (1%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PLNS ER +S +VD RE+ + ++ K++K F FDR F ESKQ DVY VV+PL
Sbjct: 33 PLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPL 92
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
I+EVL+GYNCTVFAYGQTGTGKT TM G ++ + SW+DD GI+PRA++HLFDELR+
Sbjct: 93 IEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM 152
Query: 479 LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+ + E+T+R+S+LE+YNEEL DLLS TDD TK+R
Sbjct: 153 M-EVEYTMRISYLELYNEELCDLLS-TDDTTKIR 184
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 147/298 (49%), Positives = 191/298 (64%), Gaps = 13/298 (4%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
++Y PL+D VL G+N T+FAYGQTGTGKT+TMEG + D G++P +
Sbjct: 84 ELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG--------DPEKRGVIPNS 135
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
+H+F + + ++ VR S+LEIY EE+ DLLS D +L L E V ++ L
Sbjct: 136 FDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS-KDQTKRLELKERP--DTGVYVKDL 192
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
+ E+ ++ G+Q R AT MN HSSRSH IF ITI + LDGE +R G
Sbjct: 193 SSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVG 252
Query: 210 KLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-KTPHIPYRESKLTR 268
KLNLVDLAGSE ++GAQ +R +EA IN SL LG I+ALV+ K+ HIPYR+SKLTR
Sbjct: 253 KLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTR 312
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
LLQDSLGG KT ++A V PA N+EETL+TL YA+RAKNI N+P +N+ K ALLR
Sbjct: 313 LLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNED-PKDALLR 369
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 11/148 (7%)
Query: 359 PLNSVERAAKSCSIVDCSSS-REITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYVV 415
P+N E+AA +VD ++++K + ++ KTF FD V+ +KQ ++Y
Sbjct: 31 PMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETF 90
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
PL+D VL G+N T+FAYGQTGTGKT+TMEG + D G++P + +H+F
Sbjct: 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG--------DPEKRGVIPNSFDHIFTH 142
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLS 503
+ + ++ VR S+LEIY EE+ DLLS
Sbjct: 143 ISRSQNQQYLVRASYLEIYQEEIRDLLS 170
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 188/323 (58%), Gaps = 37/323 (11%)
Query: 29 VDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPR 88
D+Y V PLID VL G+N TVFAYGQTGTGKT+TM+G +W + L G++P
Sbjct: 83 ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQG--------TWVEPELRGVIPN 134
Query: 89 AMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
A H+F + + ++ VR S+LEIY EE+ DLLS + +L L E+ + V I+
Sbjct: 135 AFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS-KEPGKRLELKENP--ETGVYIKD 191
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L N E+ ++ G+Q R +T MN SSRSH IF IT+ + DG++ +R
Sbjct: 192 LSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRV 251
Query: 209 GKLNLVDLAGSENIGRSGAQ------------------------DKRAREAGNINQSLLT 244
GKLNLVDLAGSE ++G +R +EA IN SL
Sbjct: 252 GKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSA 311
Query: 245 LGRCITALV-EKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
LG I AL ++ HIPYR+SKLTRLLQDSLGG KT ++AT+ PA + +E+LSTL +A
Sbjct: 312 LGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFA 371
Query: 304 HRAKNITNRPEINQKMSKKALLR 326
+RAKNI N+P +N+ K LLR
Sbjct: 372 NRAKNIKNKPRVNED-PKDTLLR 393
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 74/114 (64%), Gaps = 8/114 (7%)
Query: 390 KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKS 449
++ KTF FD V+ SKQ D+Y V PLID VL G+N TVFAYGQTGTGKT+TM+G
Sbjct: 65 ELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQG--- 121
Query: 450 NDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLS 503
+W + L G++P A H+F + + ++ VR S+LEIY EE+ DLLS
Sbjct: 122 -----TWVEPELRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS 170
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 191/297 (64%), Gaps = 16/297 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
D++ + + P +D++L+GYN TVFAYGQTG GK++TM G +DP G++PR
Sbjct: 63 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD-------GRGVIPRI 115
Query: 90 MNHLFDE-LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ +F L + E+TVRVS++EIY E + DLL+P +D L + E+ R V ++G
Sbjct: 116 VEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQND--NLPVHEEKNR--GVYVKG 171
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L E V + EVY+++ +G R AAT MN SSRSH+IF ITI K N G ++
Sbjct: 172 LLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQK-NVETGSA--KS 228
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-KTPHIPYRESKLT 267
G+L LVDLAGSE +G++GA + EA IN+SL LG I AL + K+ H+PYR+SKLT
Sbjct: 229 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLT 288
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKAL 324
R+LQ+SLGG ++T++I SP+ N ETLSTL + RAK+I N+ ++N ++S L
Sbjct: 289 RILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL 345
Score = 111 bits (278), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 85/150 (56%), Gaps = 11/150 (7%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
P N VE + IV T+ + + +F FDRVF KQ D++ + + P
Sbjct: 16 PQNRVEIESGGQPIVTFQGPDTCTVDSK---EAQGSFTFDRVFDMSCKQSDIFDFSIKPT 72
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE-LR 477
+D++L+GYN TVFAYGQTG GK++TM G +DP G++PR + +F L
Sbjct: 73 VDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD-------GRGVIPRIVEQIFTSILS 125
Query: 478 LLGDAEFTVRVSFLEIYNEELIDLLSPTDD 507
+ E+TVRVS++EIY E + DLL+P +D
Sbjct: 126 SAANIEYTVRVSYMEIYMERIRDLLAPQND 155
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 178/288 (61%), Gaps = 18/288 (6%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
+++ PLID VL G+N T+FAYGQTG GKT+TM G K ++P G +P +
Sbjct: 73 IFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK---------EEP--GAIPNSF 121
Query: 91 NHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
HLFD + + F V S+LE+YNEE+ DL+ + TKL L ED R + + GL
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK---NNTKLPLKEDKTR--GIYVDGL 176
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
V E+ +++KG R AAT MN SSRSH+IF + I + ++ +E++R G
Sbjct: 177 SMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSE-VIENKEVIRVG 235
Query: 210 KLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRL 269
KLNLVDLAGSE ++GA + E IN SL LG I+ LVE HIPYR+SKLTRL
Sbjct: 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRL 295
Query: 270 LQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQ 317
LQDSLGG +KT + A +SPA N +ET+STL YA RAK I N+P IN+
Sbjct: 296 LQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINE 343
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 12/114 (10%)
Query: 390 KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKS 449
K+ +TF FD V+ Q S +++ PLID VL G+N T+FAYGQTG GKT+TM G K
Sbjct: 53 KVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK- 111
Query: 450 NDPSISWQDDPLSGIVPRAMNHLFDELR-LLGDAEFTVRVSFLEIYNEELIDLL 502
++P G +P + HLFD + + F V S+LE+YNEE+ DL+
Sbjct: 112 --------EEP--GAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLI 155
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 186/298 (62%), Gaps = 17/298 (5%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY ++ +VL+GYN T+FAYGQT +GKT TMEG D GI+PR +
Sbjct: 68 VYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG--------VIGDSVKQGIIPRIV 119
Query: 91 NHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
N +F+ + + + EF ++VS+ EIY +++ DLL D++K+ L + ++G
Sbjct: 120 NDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL----DVSKVNLSVHEDKNRVPYVKGA 175
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
E+ V + ++V++++E+G R A T MN HSSRSH++F I ++K +L+ ++ L +G
Sbjct: 176 TERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLI--NVKQENLENQKKL-SG 232
Query: 210 KLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP-HIPYRESKLTR 268
KL LVDLAGSE + ++GA+ EA NIN+SL LG I+AL + HIPYR+SKLTR
Sbjct: 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTR 292
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
+LQ+SLGG +T+I+ SPA N ET STLD+ RAK + N +N++++ + R
Sbjct: 293 ILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKR 350
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PLN E A S +V ++ ++E K + FD+VF + Q VY +
Sbjct: 21 PLNDSEEKAGSKFVVKFPNN----VEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKSI 76
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+ +VL+GYN T+FAYGQT +GKT TMEG D GI+PR +N +F+ +
Sbjct: 77 VTDVLAGYNGTIFAYGQTSSGKTHTMEG--------VIGDSVKQGIIPRIVNDIFNHIYA 128
Query: 479 LG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKL 511
+ + EF ++VS+ EIY +++ DLL D++K+
Sbjct: 129 MEVNLEFHIKVSYYEIYMDKIRDLL----DVSKV 158
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 179/291 (61%), Gaps = 16/291 (5%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY ++ +VL GYN T+FAYGQT +GKT TMEG K +DP GI+PR +
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPE-------GMGIIPRIV 112
Query: 91 NHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
+F+ + + + EF ++VS+ EIY +++ DLL + T L + ED R V +G
Sbjct: 113 QDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK--TNLSVHEDKNRVPYV--KGC 168
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
E+ V + DEV +++G R A T MN HSSRSH+IF I ++K + E+ L +G
Sbjct: 169 TERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI--NVKQENTQTEQKL-SG 225
Query: 210 KLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRL 269
KL LVDLAGSE + ++GA+ EA NIN+SL LG I+AL E + ++PYR+SK+TR+
Sbjct: 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRI 285
Query: 270 LQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMS 320
LQDSLGG +T+I+ SP+ N ET STL + RAK I N +N +++
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 9/112 (8%)
Query: 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSND 451
SK + FDRVF + Q VY ++ +VL GYN T+FAYGQT +GKT TMEG K +D
Sbjct: 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHD 101
Query: 452 PSISWQDDPLSGIVPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLL 502
P GI+PR + +F+ + + + EF ++VS+ EIY +++ DLL
Sbjct: 102 PE-------GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL 146
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 211 bits (538), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 177/295 (60%), Gaps = 19/295 (6%)
Query: 27 TIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86
T +VY+ + P+ID + GYN T+FAYGQT +GKT+TM G +D L G++
Sbjct: 57 TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG----------SEDHL-GVI 105
Query: 87 PRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVII 146
PRA++ +F +++ D EF +RVS++EIYNE + DLL T + L + ED R +V +
Sbjct: 106 PRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNR--NVYV 163
Query: 147 QGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNS--LDGEE 204
L E+ V+ + K + KG + R T MN SSRSHTIF + + ++ + E
Sbjct: 164 ADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEG 223
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT--PHIPYR 262
++ LNLVDLAGSE ++GA R +E NIN+SL LG+ I L + I YR
Sbjct: 224 SVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYR 283
Query: 263 ESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQ 317
+SKLTR+LQ+SLGG KT II T++P ++ +ETL+ L +A AK + N P +N+
Sbjct: 284 DSKLTRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAKYMKNTPYVNE 336
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 84/139 (60%), Gaps = 20/139 (14%)
Query: 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSND 451
SK+F FDRVF +VY+ + P+ID + GYN T+FAYGQT +GKT+TM G
Sbjct: 43 SKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG----- 97
Query: 452 PSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPT------ 505
+D L G++PRA++ +F +++ D EF +RVS++EIYNE + DLL T
Sbjct: 98 -----SEDHL-GVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPL 151
Query: 506 ---DDITKLRHTSEYTEEI 521
+D+ + + ++ TEE+
Sbjct: 152 IIREDVNRNVYVADLTEEV 170
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 211 bits (537), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 177/288 (61%), Gaps = 21/288 (7%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY+ V PL++ G+N TVFAYGQTG+GKT+TM + S++ + GIVPRAM
Sbjct: 67 VYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-----GEASVASLLEDEQGIVPRAM 121
Query: 91 NHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
F DE LL + V VS+LE+Y EE DLL ++L ED +G+V++
Sbjct: 122 AEAFKLIDENDLL---DCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDE--RGNVVLC 176
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLD-----G 202
G++E V DEV +LE G+ R T AT +N SSRSHT+FT+T+ + +
Sbjct: 177 GVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPA 236
Query: 203 EELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTPHI 259
L K + VDLAGSE + ++G+ +R +E+ IN SLL LG I+AL + + HI
Sbjct: 237 PGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHI 296
Query: 260 PYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
PYR+SK+TR+L+DSLGG KT +IA VSP+ + +ETL+TL+YA RA+
Sbjct: 297 PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 386 RVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445
RV + FGF V ++++ Q VY+ V PL++ G+N TVFAYGQTG+GKT+TM
Sbjct: 43 RVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM- 101
Query: 446 GEKSNDPSISWQDDPLSGIVPRAMNHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLL 502
+ S++ + GIVPRAM F DE LL + V VS+LE+Y EE DLL
Sbjct: 102 ----GEASVASLLEDEQGIVPRAMAEAFKLIDENDLL---DCLVHVSYLEVYKEEFRDLL 154
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 210 bits (535), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 178/291 (61%), Gaps = 16/291 (5%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY ++ +VL GYN T+FAYGQT +GK TMEG K +DP GI+PR +
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEG-KLHDPE-------GMGIIPRIV 112
Query: 91 NHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
+F+ + + + EF ++VS+ EIY +++ DLL + T L + ED R V +G
Sbjct: 113 QDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK--TNLSVHEDKNRVPYV--KGC 168
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
E+ V + DEV +++G R A T MN HSSRSH+IF I ++K + E+ L +G
Sbjct: 169 TERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI--NVKQENTQTEQKL-SG 225
Query: 210 KLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRL 269
KL LVDLAGSE + ++GA+ EA NIN+SL LG I+AL E + ++PYR+SK+TR+
Sbjct: 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRI 285
Query: 270 LQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMS 320
LQDSLGG +T+I+ SP+ N ET STL + RAK I N +N +++
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELT 336
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSND 451
SK + FDRVF + Q VY ++ +VL GYN T+FAYGQT +GK TMEG K +D
Sbjct: 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEG-KLHD 101
Query: 452 PSISWQDDPLSGIVPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLL 502
P GI+PR + +F+ + + + EF ++VS+ EIY +++ DLL
Sbjct: 102 PE-------GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL 146
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 173/280 (61%), Gaps = 16/280 (5%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY ++ +VL GYN T+FAYGQT +GKT TMEG K +DP GI+PR +
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPE-------GMGIIPRIV 112
Query: 91 NHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
+F+ + + + EF ++VS+ EIY +++ DLL + T L + ED R ++G
Sbjct: 113 QDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK--TNLSVHEDKNR--VPYVKGC 168
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
E+ V + DEV +++G R A T MN HSSRSH+IF I ++K + E+ L +G
Sbjct: 169 TERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI--NVKQENTQTEQKL-SG 225
Query: 210 KLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRL 269
KL LVDLAGSE + ++GA+ EA NIN+SL LG I+AL E + ++PYR+SK+TR+
Sbjct: 226 KLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRI 285
Query: 270 LQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
LQDSLGG +T+I+ SP+ N ET STL + RAK I
Sbjct: 286 LQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 9/112 (8%)
Query: 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSND 451
SK + FDRVF + Q VY ++ +VL GYN T+FAYGQT +GKT TMEG K +D
Sbjct: 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHD 101
Query: 452 PSISWQDDPLSGIVPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLL 502
P GI+PR + +F+ + + + EF ++VS+ EIY +++ DLL
Sbjct: 102 PE-------GMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLL 146
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 125/283 (44%), Positives = 169/283 (59%), Gaps = 21/283 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DV++ V L+ + G+N +FAYGQTG GKT+TMEG N GI RA
Sbjct: 64 DVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAEN-----------PGINQRA 111
Query: 90 MNHLFDELR-LLGDAEFTVRVSFLEIYNEELIDLLS--PTDDITKLRLFEDSARKGSVII 146
+ LF E++ D E+T+ VS EIYNE L DLL P + + ++RL D + G + +
Sbjct: 112 LQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKL-EIRLCPDGS--GQLYV 168
Query: 147 QGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELL 206
GL E V + D++ K+ E G R T T +N HSSRSH + +T+ D S L
Sbjct: 169 PGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG---LR 225
Query: 207 RTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
TGKLNLVDLAGSE +G+SGA+ R REA +IN+SL LG I AL + H+P+R SKL
Sbjct: 226 TTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKL 285
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
T LLQDSL G +KT ++ VSP + N ETL +L +A R +++
Sbjct: 286 TYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 13/111 (11%)
Query: 394 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPS 453
+F D+VFS ++ Q DV++ V L+ + G+N +FAYGQTG GKT+TMEG N
Sbjct: 49 SFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAEN--- 104
Query: 454 ISWQDDPLSGIVPRAMNHLFDELR-LLGDAEFTVRVSFLEIYNEELIDLLS 503
GI RA+ LF E++ D E+T+ VS EIYNE L DLL
Sbjct: 105 --------PGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLG 147
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 204 bits (520), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 176/288 (61%), Gaps = 21/288 (7%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY+ V PL++ G+N TVFAYGQTG+GKT+TM + S++ + GIVPRAM
Sbjct: 67 VYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM-----GEASVASLLEDEQGIVPRAM 121
Query: 91 NHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
F DE LL + V VS+LE+Y EE DLL ++L ED +G+V++
Sbjct: 122 AEAFKLIDENDLL---DCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDE--RGNVVLC 176
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLD-----G 202
G++E V DEV +LE G+ R T AT +N SSRSHT+FT+T+ + +
Sbjct: 177 GVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPA 236
Query: 203 EELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTPHI 259
L K + VDLAGSE + ++G+ + +E+ IN SLL LG I+AL + + +I
Sbjct: 237 PGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNI 296
Query: 260 PYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
PYR+SK+TR+L+DSLGG KT +IA VSP+ + +ETL+TL+YA RA+
Sbjct: 297 PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 386 RVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445
RV + FGF V ++++ Q VY+ V PL++ G+N TVFAYGQTG+GKT+TM
Sbjct: 43 RVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM- 101
Query: 446 GEKSNDPSISWQDDPLSGIVPRAMNHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLL 502
+ S++ + GIVPRAM F DE LL + V VS+LE+Y EE DLL
Sbjct: 102 ----GEASVASLLEDEQGIVPRAMAEAFKLIDENDLL---DCLVHVSYLEVYKEEFRDLL 154
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 204 bits (520), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 171/286 (59%), Gaps = 22/286 (7%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
V+K + ++ GYN +FAYGQTG+GK++TM G D P G++PR
Sbjct: 76 VFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT---------ADQP--GLIPRLC 124
Query: 91 NHLFDELRLLGDAE--FTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ LF+ + + E F V VS++EIYNE++ DLL P L++ E S + G
Sbjct: 125 SGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVL--GPYVDG 182
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITI-HIKDNSLDGEELLR 207
L + AV + ++ ++ +G++ R AAT MN SSRSH +F IT+ H + G +
Sbjct: 183 LSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEK 242
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE------KTPHIPY 261
GKL+LVDLAGSE ++GA R +E NIN+SL TLG I+AL + K +PY
Sbjct: 243 VGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPY 302
Query: 262 RESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
R+S LT LL+DSLGG +KT+++ATVSPA N +ETLSTL YA RAK
Sbjct: 303 RDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 79/164 (48%), Gaps = 31/164 (18%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISK--------TFGFDRVFSQESKQVD- 409
P+N E + +VD +++ I VN +SK F +D F + V
Sbjct: 11 PMNRRETDLHTKCVVDVDANK--VILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKE 68
Query: 410 -------VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS 462
V+K + ++ GYN +FAYGQTG+GK++TM G D P
Sbjct: 69 KYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGT---------ADQP-- 117
Query: 463 GIVPRAMNHLFDELRLLGDAE--FTVRVSFLEIYNEELIDLLSP 504
G++PR + LF+ + + E F V VS++EIYNE++ DLL P
Sbjct: 118 GLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDP 161
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/299 (39%), Positives = 178/299 (59%), Gaps = 22/299 (7%)
Query: 33 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92
KY+V +D GYN +FAYGQTG+GKTFT+ G SN G+ PRAM+
Sbjct: 69 KYLVQSAVD----GYNVCIFAYGQTGSGKTFTIYGADSN-----------PGLTPRAMSE 113
Query: 93 LFDELRLLGDA-EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEE 151
LF ++ + F+++ +E+Y + L+DLL P +L+L KG V ++ +
Sbjct: 114 LFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQ-AKRLKLDIKKDSKGMVSVENVTV 172
Query: 152 KAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKL 211
++ +E+ I+++GS++R T TLMN SSRSH I +++ I+ +L + + R GKL
Sbjct: 173 VSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLI--VSVIIESTNLQTQAIAR-GKL 229
Query: 212 NLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRLLQ 271
+ VDLAGSE + +SG+ + +EA +IN+SL LG I+AL HIPYR KLT L+
Sbjct: 230 SFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMS 289
Query: 272 DSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRVTSI 330
DSLGG KT + +SPA+ N++ET ++L YA R ++I N P N +S K + R+ +
Sbjct: 290 DSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKN--VSSKEVARLKKL 346
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 41/209 (19%)
Query: 380 EITIKERVNDKISKTFGFDRVFSQESKQVDVY---KYVVNPLIDEVLSGYNCTVFAYGQT 436
E T++ D +K +DRVF + Q DV+ KY+V +D GYN +FAYGQT
Sbjct: 34 EFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVD----GYNVCIFAYGQT 89
Query: 437 GTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDA-EFTVRVSFLEIYN 495
G+GKTFT+ G SN G+ PRAM+ LF ++ + F+++ +E+Y
Sbjct: 90 GSGKTFTIYGADSN-----------PGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQ 138
Query: 496 EELIDLLSPTDDITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEV 555
+ L+DLL P ++ ++L+ D++ ++ G+ ++ EN + Y E+
Sbjct: 139 DTLVDLLLP--------------KQAKRLKLDIK--KDSKGM-VSVENVTVVSISTYEEL 181
Query: 556 TSV-----EKKSSSPSAAEDQPPTKHLIL 579
++ E++ ++ + +Q HLI+
Sbjct: 182 KTIIQRGSEQRHTTGTLMNEQSSRSHLIV 210
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 119/288 (41%), Positives = 175/288 (60%), Gaps = 20/288 (6%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
+T +V+++ P++ L+GYNCTV AYG TG GKT TM G D+P G+
Sbjct: 84 STQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS---------ADEP--GV 132
Query: 86 VPRAMNHLFDELRLLGDAEF-TVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
+ M HL+ + + + + + VS+LE+YNE++ DLL + L + ED+ +KG V
Sbjct: 133 MYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSG---PLAVREDT-QKG-V 187
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
++ GL + +E+ +L+ G++ R T MNA SSRSH +F I + +D + +
Sbjct: 188 VVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQ 247
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTPHIPY 261
+R K++L+DLAGSE SGA+ R E NIN+SLL LG I AL + K HIPY
Sbjct: 248 NVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPY 307
Query: 262 RESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
R SKLTRLL+DSLGG +T +IA VSP+ + ++T +TL YA+RAK+I
Sbjct: 308 RNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 12/109 (11%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD VF + S Q +V+++ P++ L+GYNCTV AYG TG GKT TM G
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS------- 126
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDAEF-TVRVSFLEIYNEELIDLL 502
D+P G++ M HL+ + + + + + VS+LE+YNE++ DLL
Sbjct: 127 --ADEP--GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL 171
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 196 bits (498), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 175/300 (58%), Gaps = 24/300 (8%)
Query: 33 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92
KY+V +D GYN +FAYGQTG+GKTFT+ G +SN G+ PRA
Sbjct: 77 KYLVQSAVD----GYNVCIFAYGQTGSGKTFTIYGHESN-----------PGLTPRATKE 121
Query: 93 LFDEL-RLLGDAEFTVRVSFLEIYNEELIDLLSP-TDDITKLRLFEDSARKGSVIIQGLE 150
LF+ L R F+++ +E+Y + L+DLL P + KL + +DS KG V ++ +
Sbjct: 122 LFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDS--KGMVFVENVT 179
Query: 151 EKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGK 210
+ +E+ ILE+GS++R + T MN SSRSH I ++ I D L + R GK
Sbjct: 180 TIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESID--LQTQSAAR-GK 236
Query: 211 LNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRLL 270
L+ VDLAGSE + +SG+ + +EA +IN+SL LG I AL HIPYR KLT L+
Sbjct: 237 LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLM 296
Query: 271 QDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRVTSI 330
DSLGG KT + VSPA+ N++ET ++L YA R + I N P ++ +S K ++R+ +
Sbjct: 297 SDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDP--SKHISSKEMVRLKKL 354
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 79/153 (51%), Gaps = 27/153 (17%)
Query: 359 PLN---SVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVY---K 412
PLN S ER + + VD E T++ D K +DRVF + Q D++ K
Sbjct: 23 PLNEKESSEREKQMLTTVD-----EFTVEHPWKDDKRKQHIYDRVFDMRASQDDIFEDTK 77
Query: 413 YVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 472
Y+V +D GYN +FAYGQTG+GKTFT+ G +SN G+ PRA L
Sbjct: 78 YLVQSAVD----GYNVCIFAYGQTGSGKTFTIYGHESN-----------PGLTPRATKEL 122
Query: 473 FDEL-RLLGDAEFTVRVSFLEIYNEELIDLLSP 504
F+ L R F+++ +E+Y + L+DLL P
Sbjct: 123 FNILKRDSKRFSFSLKAYMVELYQDTLVDLLLP 155
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 171/308 (55%), Gaps = 24/308 (7%)
Query: 24 FY---TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDD 80
FY +T D+Y V P++ +L G N +V AYG TG GKT TM G
Sbjct: 72 FYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQ--------- 122
Query: 81 PLSGIVPRAMNHLFDELRLLG----DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFE 136
G++PRA+ L R G +V +S+LEIY E+++DLL P +R E
Sbjct: 123 --PGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIR--E 178
Query: 137 DSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIK 196
D +G+++I GL +K + + + + S+ R AT +N SSRSH + + + +
Sbjct: 179 DC--RGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQR 236
Query: 197 DNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT 256
+ + R GKL L+DLAGSE+ R+G + R +E+G IN SL LG+ + AL +
Sbjct: 237 ERLAPFRQ--REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL 294
Query: 257 PHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEIN 316
P +PYR+SKLTRLLQDSLGG + +IA ++P + +T+S L++A R+K + NRP N
Sbjct: 295 PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTN 354
Query: 317 QKMSKKAL 324
+ + AL
Sbjct: 355 ESLQPHAL 362
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 24/145 (16%)
Query: 365 RAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLS 424
R SCS+ I N + + + FD + + S Q D+Y V P++ +L
Sbjct: 46 RGMDSCSL---------EIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE 96
Query: 425 GYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG---- 480
G N +V AYG TG GKT TM G G++PRA+ L R G
Sbjct: 97 GQNASVLAYGPTGAGKTHTMLGSPEQ-----------PGVIPRALMDLLQLTREEGAEGR 145
Query: 481 DAEFTVRVSFLEIYNEELIDLLSPT 505
+V +S+LEIY E+++DLL P
Sbjct: 146 PWALSVTMSYLEIYQEKVLDLLDPA 170
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 180/315 (57%), Gaps = 31/315 (9%)
Query: 23 IFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPL 82
I Y + VY+ + ++ GYN +FAYGQTG GK++TM G++ D
Sbjct: 81 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ-------- 132
Query: 83 SGIVPRAMNHLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSAR 140
GI+P+ LF + + ++V VS++EIY E + DLL+P + LR+ E
Sbjct: 133 -GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-GNLRVREHPLL 190
Query: 141 KGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSL 200
++ L + AV + +++ +++ G++ R AAT MN SSRSH +F I K +
Sbjct: 191 --GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRH-- 246
Query: 201 DGEELLRT---GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--- 254
D E + T K++LVDLAGSE +GA+ R +E NIN+SL TLG+ I+AL E
Sbjct: 247 DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDS 306
Query: 255 ---------KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHR 305
KT IPYR+S LT LL+++LGG ++T+++A +SPA +N +ETLSTL YA R
Sbjct: 307 GPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 366
Query: 306 AKNITNRPEINQKMS 320
AK I N +N +++
Sbjct: 367 AKQIRNTVSVNLELT 381
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVDV 410
P NS E + S I+ S S + + + K+F FD + + Q V
Sbjct: 30 PFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQV 89
Query: 411 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470
Y+ + ++ GYN +FAYGQTG GK++TM G++ D GI+P+
Sbjct: 90 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ---------QGIIPQLCE 140
Query: 471 HLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSP 504
LF + + ++V VS++EIY E + DLL+P
Sbjct: 141 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 176
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 177/311 (56%), Gaps = 31/311 (9%)
Query: 23 IFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPL 82
I Y + VY+ + ++ GYN +FAYGQTG GK++TM G++ D
Sbjct: 65 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ-------- 116
Query: 83 SGIVPRAMNHLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSAR 140
GI+P+ LF + + ++V VS++EIY E + DLL+P + LR+ E
Sbjct: 117 -GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-GNLRVREHPLL 174
Query: 141 KGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSL 200
++ L + AV + +++ +++ G++ R AAT MN SSRSH +F I K +
Sbjct: 175 --GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRH-- 230
Query: 201 DGEELLRT---GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--- 254
D E + T K++LVDLAGSE +GA+ R +E NIN+SL TLG+ I+AL E
Sbjct: 231 DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDS 290
Query: 255 ---------KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHR 305
KT IPYR+S LT LL+++LGG ++T+++A +SPA +N +ETLSTL YA R
Sbjct: 291 GPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 350
Query: 306 AKNITNRPEIN 316
AK I N +N
Sbjct: 351 AKQIRNTVSVN 361
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVDV 410
P NS E + S I+ S S + + + K+F FD + + Q V
Sbjct: 14 PFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQV 73
Query: 411 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470
Y+ + ++ GYN +FAYGQTG GK++TM G++ D GI+P+
Sbjct: 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ---------QGIIPQLCE 124
Query: 471 HLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSP 504
LF + + ++V VS++EIY E + DLL+P
Sbjct: 125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 177/312 (56%), Gaps = 31/312 (9%)
Query: 23 IFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPL 82
I Y + VY+ + ++ GYN +FAYGQTG GK++TM G++ D
Sbjct: 65 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ-------- 116
Query: 83 SGIVPRAMNHLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSAR 140
GI+P+ LF + + ++V VS++EIY E + DLL+P + LR+ E
Sbjct: 117 -GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-GNLRVREHPLL 174
Query: 141 KGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSL 200
++ L + AV + +++ +++ G++ R AAT MN SSRSH +F I K +
Sbjct: 175 --GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRH-- 230
Query: 201 DGEELLRT---GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--- 254
D E + T K++LVDLAGSE +GA+ R +E NIN+SL TLG+ I+AL E
Sbjct: 231 DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDS 290
Query: 255 ---------KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHR 305
KT IPYR+S LT LL+++LGG ++T+++A +SPA +N +ETLSTL YA R
Sbjct: 291 GPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 350
Query: 306 AKNITNRPEINQ 317
AK I N +N
Sbjct: 351 AKQIRNTVSVNH 362
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVDV 410
P NS E + S I+ S S + + + K+F FD + + Q V
Sbjct: 14 PFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQV 73
Query: 411 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470
Y+ + ++ GYN +FAYGQTG GK++TM G++ D GI+P+
Sbjct: 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ---------QGIIPQLCE 124
Query: 471 HLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSP 504
LF + + ++V VS++EIY E + DLL+P
Sbjct: 125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 177/312 (56%), Gaps = 31/312 (9%)
Query: 23 IFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPL 82
I Y + VY+ + ++ GYN +FAYGQTG GK++TM G++ D
Sbjct: 65 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ-------- 116
Query: 83 SGIVPRAMNHLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSAR 140
GI+P+ LF + + ++V VS++EIY E + DLL+P + LR+ E
Sbjct: 117 -GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-GNLRVREHPLL 174
Query: 141 KGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSL 200
++ L + AV + +++ +++ G++ R AAT MN SSRSH +F I K +
Sbjct: 175 --GPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRH-- 230
Query: 201 DGEELLRT---GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--- 254
D E + T K++LVDLAGSE +GA+ R +E NIN+SL TLG+ I+AL E
Sbjct: 231 DAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDS 290
Query: 255 ---------KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHR 305
KT IPYR+S LT LL+++LGG ++T+++A +SPA +N +ETLSTL YA R
Sbjct: 291 GPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 350
Query: 306 AKNITNRPEINQ 317
AK I N +N
Sbjct: 351 AKQIRNTVSVNH 362
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQE--------SKQVDV 410
P NS E + S I+ S S + + + K+F FD + + Q V
Sbjct: 14 PFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQV 73
Query: 411 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470
Y+ + ++ GYN +FAYGQTG GK++TM G++ D GI+P+
Sbjct: 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ---------QGIIPQLCE 124
Query: 471 HLFDELR--LLGDAEFTVRVSFLEIYNEELIDLLSP 504
LF + + ++V VS++EIY E + DLL+P
Sbjct: 125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 159/282 (56%), Gaps = 17/282 (6%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY+ V ++ + L GYN T+ YGQTG GKT+TM G N GI+PRA+
Sbjct: 88 VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH--------RGILPRAL 139
Query: 91 NHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSP----TDDITKLRLFEDSARKGSVII 146
+F + TVRVS+LEIYNE L DLLS +T + + E+ V I
Sbjct: 140 QQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ---GVFI 196
Query: 147 QGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELL 206
+GL +++ + +L +G R A+ MN +SSRSH IFTI + +L E+ +
Sbjct: 197 KGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYI 256
Query: 207 RTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALV-EKTPHIPYRESK 265
T K+NLVDLAGSE +G+SG++ + +EA IN+SL L + I AL +K HIP+R+ K
Sbjct: 257 -TSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCK 315
Query: 266 LTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
LT L+DSLGG ++ + +EETLS+L +A R K
Sbjct: 316 LTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 62/116 (53%), Gaps = 9/116 (7%)
Query: 388 NDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447
N + +F D V S+ + VY+ V ++ + L GYN T+ YGQTG GKT+TM G
Sbjct: 67 NQQTDWSFKLDGVLHDASQDL-VYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGA 125
Query: 448 KSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLS 503
N GI+PRA+ +F + TVRVS+LEIYNE L DLLS
Sbjct: 126 TENYKH--------RGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 173
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 170/322 (52%), Gaps = 43/322 (13%)
Query: 25 YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSG 84
Y T VY + +D GY+ +FAYGQTG+GK++TM G D P G
Sbjct: 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP---------DQP--G 162
Query: 85 IVPRAMNHLFDELRLLGDA----EFTVRVSFLEIYNEELIDLLSPT--DDITKLRLFEDS 138
++PR LF + D + V+VS+ E+YNE + DLL+P + +S
Sbjct: 163 LIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRES 222
Query: 139 ARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDN 198
+G ++ L E V +E+ + + G R A+T MN SSRSH +FTI + +
Sbjct: 223 PTEGP-YVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHH 281
Query: 199 SLDGEELL-RTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--- 254
L+ ++ R+ ++ LVDLAGSE + A +R RE NIN+SL TLGR I AL +
Sbjct: 282 DLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKS 341
Query: 255 --------------KTPH-----IPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEE 295
+TP +PYR+S LT LL+DSLGG +KT++IA +SP + +E
Sbjct: 342 SASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDE 399
Query: 296 TLSTLDYAHRAKNITNRPEINQ 317
TLSTL YA +AK I R +NQ
Sbjct: 400 TLSTLRYADQAKRIRTRAVVNQ 421
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 22/123 (17%)
Query: 393 KTFGFDRVFSQE-------SKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445
K+F FD+ F + Q VY + +D GY+ +FAYGQTG+GK++TM
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 446 GEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDA----EFTVRVSFLEIYNEELIDL 501
G D P G++PR LF + D + V+VS+ E+YNE + DL
Sbjct: 156 GTP---------DQP--GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDL 204
Query: 502 LSP 504
L+P
Sbjct: 205 LAP 207
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 160/287 (55%), Gaps = 28/287 (9%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 118 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKA-----QNASKGIYAMAS 172
Query: 91 NHLF-----DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVI 145
+F R LG V V+F EIYN +L DLL+ KLR+ ED ++ V+
Sbjct: 173 RDVFLLKNQPCYRKLG---LEVYVTFFEIYNGKLFDLLNKK---AKLRVLEDGKQQVQVV 226
Query: 146 IQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEEL 205
GL+E V++ D+V K+++ GS R + T N++SSRSH F I + K
Sbjct: 227 --GLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRM------ 278
Query: 206 LRTGKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRES 264
GK +LVDLAG+E + + D++ R E IN+SLL L CI AL + H P+RES
Sbjct: 279 --HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRES 336
Query: 265 KLTRLLQDS-LGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNIT 310
KLT++L+DS +G ++T +IAT+SP + E TL+TL YA R K ++
Sbjct: 337 KLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 356 QKMPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVD 409
+K PLN E A K ++ S + + E ++ ++K F FD F + +
Sbjct: 58 RKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEV 117
Query: 410 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 469
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 118 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKA-----QNASKGIYAMAS 172
Query: 470 NHLF-----DELRLLGDAEFTVRVSFLEIYNEELIDLLS 503
+F R LG V V+F EIYN +L DLL+
Sbjct: 173 RDVFLLKNQPCYRKLG---LEVYVTFFEIYNGKLFDLLN 208
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/283 (38%), Positives = 158/283 (55%), Gaps = 22/283 (7%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY++ PL++ + T FAYGQTG+GKT TM G+ S D GI A
Sbjct: 156 VYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGK-----NQDCSKGIYALAA 210
Query: 91 NHLFDELRL--LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+F L+ E V +F EIY+ ++ DLL+ TKLR+ ED K V + G
Sbjct: 211 RDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRK---TKLRVLEDG--KQQVQVVG 265
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L+E+ V ++V K+++ G+ R + T NAHSSRSH +F I + K
Sbjct: 266 LQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKL--------H 317
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRESKLT 267
GK +L+DLAG+E + + D++ R E IN+SLL L CI AL PH P+R SKLT
Sbjct: 318 GKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLT 377
Query: 268 RLLQDS-LGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
++L+DS +G ++T +IAT+SP + E TL+TL YA+R K +
Sbjct: 378 QVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 356 QKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKI-------SKTFGFDRVFSQESKQV 408
+K PLN E K ++ S + + E K+ ++TF FD F +
Sbjct: 96 RKRPLNKKETQMKDLDVITIPSKDVVMVHE-PKQKVDLTRYLENQTFRFDYAFDDSAPNE 154
Query: 409 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 468
VY++ PL++ + T FAYGQTG+GKT TM G+ S D GI A
Sbjct: 155 MVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGK-----NQDCSKGIYALA 209
Query: 469 MNHLFDELRL--LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIE 522
+F L+ E V +F EIY+ ++ DLL+ TKLR + ++++
Sbjct: 210 ARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRK---TKLRVLEDGKQQVQ 262
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/274 (39%), Positives = 157/274 (57%), Gaps = 21/274 (7%)
Query: 39 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 98
LI L G N VFAYGQTG+GKTFTM P +G++P ++ +F+++
Sbjct: 454 LIQCSLDGTNVCVFAYGQTGSGKTFTMS-------------HPTNGMIPLSLKKIFNDIE 500
Query: 99 LLGDA--EFTVRVSFLEIYNEELIDLLSPT-DDITKLRLFEDSARKGSVIIQGLEEKAVH 155
L + +TVR F+EIYNE ++DLL+P D TK + D G + + +
Sbjct: 501 ELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDI-AGKTTVTNVSTIDIK 559
Query: 156 NKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVD 215
+ ++ IL + ++KR TAAT N HSSRSH+IF I + NSL E G LNL+D
Sbjct: 560 SPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQ-GYNSLTKES--SYGTLNLID 616
Query: 216 LAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL-VEKTPHIPYRESKLTRLLQDSL 274
LAGSE + S A+ R +E IN+SL LG I +L ++ H+PYR SKLT LL+ SL
Sbjct: 617 LAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSL 676
Query: 275 GGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKN 308
GG +KT + +SP ++ ET+++L +A + N
Sbjct: 677 GGNSKTLMFVNISPLTKDLNETINSLRFATKVNN 710
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 17/138 (12%)
Query: 373 VDCSSSREITIKERVNDKISKT-FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 431
++ S +E+ I +N+ S F FD++F +E V++ + + LI L G N VF
Sbjct: 409 INDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL-SQLIQCSLDGTNVCVF 467
Query: 432 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVS 489
AYGQTG+GKTFTM P +G++P ++ +F+++ L + +TVR
Sbjct: 468 AYGQTGSGKTFTMS-------------HPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGK 514
Query: 490 FLEIYNEELIDLLSPTDD 507
F+EIYNE ++DLL+P D
Sbjct: 515 FIEIYNEAIVDLLNPKID 532
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 158/285 (55%), Gaps = 24/285 (8%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 138 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS-----QNASKGIYAMAS 192
Query: 91 NHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
+F ++ R + V V+F EIYN ++ DLL+ KLR+ EDS ++ V+
Sbjct: 193 RDVFLLKNQPRYR-NLNLEVYVTFFEIYNGKVFDLLNKK---AKLRVLEDSRQQVQVV-- 246
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
GL+E V D+V K++ GS R + T N++SSRSH F I + K
Sbjct: 247 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRL-------- 298
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
GK +LVDLAG+E + + D++ R E IN+SLL L CI AL + H P+RESKL
Sbjct: 299 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 358
Query: 267 TRLLQDS-LGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNIT 310
T++L+DS +G ++T +IA +SP + E TL+TL YA R K ++
Sbjct: 359 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 25/221 (11%)
Query: 356 QKMPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVD 409
+K PLN E A K ++ S + + E ++ ++K F FD F + +
Sbjct: 78 RKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEV 137
Query: 410 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 469
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 138 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS-----QNASKGIYAMAS 192
Query: 470 NHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRR 526
+F ++ R + V V+F EIYN ++ DLL+ KLR +E R+
Sbjct: 193 RDVFLLKNQPRYR-NLNLEVYVTFFEIYNGKVFDLLNKK---AKLR-------VLEDSRQ 241
Query: 527 DLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSA 567
+Q + + A++ +M+N A TS + ++S S+
Sbjct: 242 QVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 282
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 163/287 (56%), Gaps = 31/287 (10%)
Query: 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 95
V LI L GYN +FAYGQTG+GKT+TM +P GIVP +NH+F
Sbjct: 95 VGQLIQSSLDGYNVCIFAYGQTGSGKTYTML-------------NPGDGIVPATINHIFS 141
Query: 96 ELRLLGDAEFTVRVS--FLEIYNEELIDLL---SPTDDI------TKLRLFEDSARKGSV 144
+ L ++ +VS F+EIYNE ++DLL +P+ + +K + D K +
Sbjct: 142 WIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELK-TT 200
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
I + + ++D V K+L++ ++ R TA+T N HSSRSH+IF I + K N GE+
Sbjct: 201 YITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGK-NEGTGEK 259
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTPHIPY 261
G LNLVDLAGSE + S +R RE +IN+SL LG I AL + HIP+
Sbjct: 260 --SQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPF 317
Query: 262 RESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKN 308
R SKLT LLQ SL G +KT + +SPA L++ ET+++L +A + N
Sbjct: 318 RNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNN 364
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD++F Q+ +++K V LI L GYN +FAYGQTG+GKT+TM
Sbjct: 76 FKFDKIFDQQETNDEIFKEV-GQLIQSSLDGYNVCIFAYGQTGSGKTYTML--------- 125
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVS--FLEIYNEELIDLL 502
+P GIVP +NH+F + L ++ +VS F+EIYNE ++DLL
Sbjct: 126 ----NPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLL 171
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 158/285 (55%), Gaps = 24/285 (8%)
Query: 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 66 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS-----QNASKGIYAMAS 120
Query: 91 NHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
+F ++ R + V V+F EIYN ++ DLL+ KLR+ EDS ++ V+
Sbjct: 121 RDVFLLKNQPRYR-NLNLEVYVTFFEIYNGKVFDLLNKK---AKLRVLEDSRQQVQVV-- 174
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
GL+E V D+V K++ GS R + T N++SSRSH F I + K
Sbjct: 175 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR--------L 226
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
GK +LVDLAG+E + + D++ R E IN+SLL L CI AL + H P+RESKL
Sbjct: 227 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 286
Query: 267 TRLLQDS-LGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNIT 310
T++L+DS +G ++T +IA +SP + E TL+TL YA R K ++
Sbjct: 287 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 102/221 (46%), Gaps = 25/221 (11%)
Query: 356 QKMPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVD 409
+K PLN E A K ++ S + + E ++ ++K F FD F + +
Sbjct: 6 RKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEV 65
Query: 410 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 469
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 66 VYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKS-----QNASKGIYAMAS 120
Query: 470 NHLF---DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRR 526
+F ++ R + V V+F EIYN ++ DLL+ KLR +E R+
Sbjct: 121 RDVFLLKNQPRYR-NLNLEVYVTFFEIYNGKVFDLLNKK---AKLR-------VLEDSRQ 169
Query: 527 DLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSA 567
+Q + + A++ +M+N A TS + ++S S+
Sbjct: 170 QVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSS 210
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 159/277 (57%), Gaps = 25/277 (9%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS-GIVPR 88
D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G P S G++PR
Sbjct: 122 DIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV------------PESVGVIPR 168
Query: 89 AMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVII 146
++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ +++ K + +
Sbjct: 169 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN--KNDIYV 226
Query: 147 QGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELL 206
+ E+ V + + + ++ R TA+T N SSRSH + + + I ++ E +
Sbjct: 227 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE--I 283
Query: 207 RTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
G +NLVDLAGSE S R E NIN+SL L I AL++K HIPYR SKL
Sbjct: 284 SVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKL 339
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
T LL SLGG +KT + VSP Q +E++ +L +A
Sbjct: 340 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 18/115 (15%)
Query: 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDP 452
+ F FD+VF S Q D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G
Sbjct: 106 QIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----- 159
Query: 453 SISWQDDPLS-GIVPRAMNHLFDELRL---LGDAEFTVRVSFLEIYNEELIDLLS 503
P S G++PR ++ LFD +R LG E+ ++ +FLEIYNE L DLLS
Sbjct: 160 -------PESVGVIPRTVDLLFDSIRGYRNLG-WEYEIKATFLEIYNEVLYDLLS 206
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 159/277 (57%), Gaps = 25/277 (9%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS-GIVPR 88
D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G P S G++PR
Sbjct: 130 DIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV------------PESVGVIPR 176
Query: 89 AMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVII 146
++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ +++ K + +
Sbjct: 177 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN--KNDIYV 234
Query: 147 QGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELL 206
+ E+ V + + + ++ R TA+T N SSRSH + + + I ++ E +
Sbjct: 235 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE--I 291
Query: 207 RTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
G +NLVDLAGSE S R E NIN+SL L I AL++K HIPYR SKL
Sbjct: 292 SVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKL 347
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
T LL SLGG +KT + VSP Q +E++ +L +A
Sbjct: 348 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 16/114 (14%)
Query: 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDP 452
+ F FD+VF S Q D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G
Sbjct: 114 QIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----- 167
Query: 453 SISWQDDPLS-GIVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLS 503
P S G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS
Sbjct: 168 -------PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 214
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 159/277 (57%), Gaps = 25/277 (9%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS-GIVPR 88
D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G P S G++PR
Sbjct: 116 DIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV------------PESVGVIPR 162
Query: 89 AMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVII 146
++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ +++ K + +
Sbjct: 163 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN--KNDIYV 220
Query: 147 QGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELL 206
+ E+ V + + + ++ R TA+T N SSRSH + + + I ++ E +
Sbjct: 221 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE--I 277
Query: 207 RTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
G +NLVDLAGSE S R E NIN+SL L I AL++K HIPYR SKL
Sbjct: 278 SVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKL 333
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
T LL SLGG +KT + VSP Q +E++ +L +A
Sbjct: 334 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 16/114 (14%)
Query: 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDP 452
+ F FD+VF S Q D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G
Sbjct: 100 QIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----- 153
Query: 453 SISWQDDPLS-GIVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLS 503
P S G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS
Sbjct: 154 -------PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 200
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 158/276 (57%), Gaps = 23/276 (8%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
D+++ +V+PLI L GYN +FAYGQ+G+GKT+TM+G + G++PR
Sbjct: 119 DIFE-MVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPES-----------VGVIPRT 166
Query: 90 MNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ +++ K + +
Sbjct: 167 VDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN--KNDIYVS 224
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
+ E+ V + + + ++ R TA+T N SSRSH + + + I ++ E +
Sbjct: 225 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE--IS 281
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLT 267
G +NLVDLAGSE S R E NIN+SL L I AL++K HIPYR SKLT
Sbjct: 282 VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLT 337
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
LL SLGG +KT + VSP Q +E++ +L +A
Sbjct: 338 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 71/113 (62%), Gaps = 14/113 (12%)
Query: 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDP 452
+ F FD+VF S Q D+++ +V+PLI L GYN +FAYGQ+G+GKT+TM+G +
Sbjct: 103 QIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPES-- 159
Query: 453 SISWQDDPLSGIVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLS 503
G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS
Sbjct: 160 ---------VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 203
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 158/277 (57%), Gaps = 25/277 (9%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS-GIVPR 88
D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G P S G++PR
Sbjct: 119 DIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV------------PESVGVIPR 165
Query: 89 AMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVII 146
++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ +++ K + +
Sbjct: 166 TVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN--KNDIYV 223
Query: 147 QGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELL 206
+ E+ V + + + ++ R TA+T N SSRSH + + + I ++ E +
Sbjct: 224 SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLEL-IGRHAEKQE--I 280
Query: 207 RTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
G +NLVDLAGSE S R E NI +SL L I AL++K HIPYR SKL
Sbjct: 281 SVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKL 336
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
T LL SLGG +KT + VSP Q +E++ +L +A
Sbjct: 337 THLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 72/114 (63%), Gaps = 16/114 (14%)
Query: 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDP 452
+ F FD+VF S Q D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G
Sbjct: 103 QIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV----- 156
Query: 453 SISWQDDPLS-GIVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLS 503
P S G++PR ++ LFD +R + E+ ++ +FLEIYNE L DLLS
Sbjct: 157 -------PESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 203
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 162/302 (53%), Gaps = 52/302 (17%)
Query: 27 TIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86
T VDV+K V L+ L GYN +FAYGQTG+GKTFTM +P GI+
Sbjct: 121 TNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTML-------------NPGDGII 166
Query: 87 PRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
P ++H+F+ + L ++ V F+EIYNE ++DLL +D+ K ED++
Sbjct: 167 PSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLR-SDNNNK----EDTS----- 216
Query: 145 IIQGLEEKAVHNKDE------------------VYKILEKGSQKRQTAATLMNAHSSRSH 186
GL+ + H+++ V IL+K ++ R TA+T N HSSRSH
Sbjct: 217 --IGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 274
Query: 187 TIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLG 246
+IF I + N+ G G LNLVDLAGSE I S R RE NIN+SL LG
Sbjct: 275 SIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALG 331
Query: 247 RCITALVEKTP---HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
I AL + HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A
Sbjct: 332 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 391
Query: 304 HR 305
+
Sbjct: 392 SK 393
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 110 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTML--------- 159
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 502
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 160 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLL 205
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 162/303 (53%), Gaps = 52/303 (17%)
Query: 27 TIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86
T VDV+K V L+ L GYN +FAYGQTG+GKTFTM +P GI+
Sbjct: 64 TNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML-------------NPGDGII 109
Query: 87 PRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
P ++H+F+ + L ++ V F+EIYNE ++DLL +D+ K ED++
Sbjct: 110 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-SDNNNK----EDTS----- 159
Query: 145 IIQGLEEKAVHNKDE------------------VYKILEKGSQKRQTAATLMNAHSSRSH 186
GL+ + H+++ V IL+K ++ R TA+T N HSSRSH
Sbjct: 160 --IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 217
Query: 187 TIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLG 246
+IF I + N+ G G LNLVDLAGSE I S R RE NIN+SL LG
Sbjct: 218 SIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 274
Query: 247 RCITALVEKTP---HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
I AL + HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A
Sbjct: 275 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 334
Query: 304 HRA 306
+
Sbjct: 335 SKV 337
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 53 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 102
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 502
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 103 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 148
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 162/303 (53%), Gaps = 52/303 (17%)
Query: 27 TIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86
T VDV+K V L+ L GYN +FAYGQTG+GKTFTM +P GI+
Sbjct: 76 TNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML-------------NPGDGII 121
Query: 87 PRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
P ++H+F+ + L ++ V F+EIYNE ++DLL +D+ K ED++
Sbjct: 122 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-SDNNNK----EDTS----- 171
Query: 145 IIQGLEEKAVHNKDE------------------VYKILEKGSQKRQTAATLMNAHSSRSH 186
GL+ + H+++ V IL+K ++ R TA+T N HSSRSH
Sbjct: 172 --IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 229
Query: 187 TIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLG 246
+IF I + N+ G G LNLVDLAGSE I S R RE NIN+SL LG
Sbjct: 230 SIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 286
Query: 247 RCITALVEKTP---HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
I AL + HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A
Sbjct: 287 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 346
Query: 304 HRA 306
+
Sbjct: 347 SKV 349
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 65 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 114
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 502
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 115 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 160
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 149/282 (52%), Gaps = 31/282 (10%)
Query: 39 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 98
L+ L GY +FAYGQTG+GKTFTMEG DP L G++PRA+ HLF +
Sbjct: 107 LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ-------LEGLIPRALRHLFSVAQ 159
Query: 99 LLGDAEFTVR--VSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHN 156
L +T S++EIYNE + DLL+ K + E R+ G EE V N
Sbjct: 160 ELSGQGWTYSFVASYVEIYNETVRDLLA--TGTRKGQGGECEIRRAG---PGSEELTVTN 214
Query: 157 --------KDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
+ EV +L Q R A T N SSRSH++F + I + +S L+
Sbjct: 215 ARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRG----LQC 270
Query: 209 G-KLNLVDLAGSE----NIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRE 263
G L+LVDLAGSE + + +R RE IN SL TLG I AL K H+PYR
Sbjct: 271 GAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRN 330
Query: 264 SKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHR 305
SKLT LLQ+SLGG K + +SP + N+ E+L++L +A +
Sbjct: 331 SKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 65/111 (58%), Gaps = 10/111 (9%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FDRVF S Q +V++ + L+ L GY +FAYGQTG+GKTFTMEG DP
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ- 142
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVR--VSFLEIYNEELIDLLS 503
L G++PRA+ HLF + L +T S++EIYNE + DLL+
Sbjct: 143 ------LEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLA 187
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 162/285 (56%), Gaps = 31/285 (10%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
++Y+ ++ PL+D++L G+ CT AYGQTGTGK+++M P + L GI+PRA
Sbjct: 77 EMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM----GMTPPGEILPEHL-GILPRA 131
Query: 90 MNHLFDELRLLGDAE-----FTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
+ +F+ R+ E V SF+EIYNE+ DLL T + + +AR
Sbjct: 132 LGDIFE--RVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMV-----AAR---- 180
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
Q +H++ +++ ILE G++ R+ T MN++SSRSH I +TIH+K +
Sbjct: 181 -CQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAI--VTIHVKSKT----- 232
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
++N+VDLAGSE + R+G + +E NIN LL++ + + ++ IPYR+S
Sbjct: 233 --HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDS 290
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
LT +LQ SL ++ + +A +SP Q ++ ETLSTL + AK +
Sbjct: 291 VLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 12/119 (10%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD F Q ++Y+ ++ PL+D++L G+ CT AYGQTGTGK+++M P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM----GMTPPG 118
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDAE-----FTVRVSFLEIYNEELIDLLSPTDDI 508
+ L GI+PRA+ +F+ R+ E V SF+EIYNE+ DLL T +
Sbjct: 119 EILPEHL-GILPRALGDIFE--RVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM 174
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 161/283 (56%), Gaps = 31/283 (10%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
++Y+ ++ PL+D++L G+ CT AYGQTGTGK+++M P + L GI+PRA
Sbjct: 77 EMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM----GMTPPGEILPEHL-GILPRA 131
Query: 90 MNHLFDELRLLGDAE-----FTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
+ +F+ R+ E V SF+EIYNE+ DLL T + + +AR
Sbjct: 132 LGDIFE--RVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMV-----AAR---- 180
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
Q +H++ +++ ILE G++ R+ T MN++SSRSH I +TIH+K +
Sbjct: 181 -CQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAI--VTIHVKSKT----- 232
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
++N+VDLAGSE + R+G + +E NIN LL++ + + ++ IPYR+S
Sbjct: 233 --HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDS 290
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
LT +LQ SL ++ + +A +SP Q ++ ETLSTL + AK
Sbjct: 291 VLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 12/119 (10%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD F Q ++Y+ ++ PL+D++L G+ CT AYGQTGTGK+++M P
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM----GMTPPG 118
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDAE-----FTVRVSFLEIYNEELIDLLSPTDDI 508
+ L GI+PRA+ +F+ R+ E V SF+EIYNE+ DLL T +
Sbjct: 119 EILPEHL-GILPRALGDIFE--RVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM 174
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 161/303 (53%), Gaps = 52/303 (17%)
Query: 27 TIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86
T VDV+K V L+ L GYN +FAYGQTG+GKTFTM +P GI+
Sbjct: 65 TNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML-------------NPGDGII 110
Query: 87 PRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
P ++H+F+ + L ++ V F+EIYNE ++DLL +D+ K ED++
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-SDNNNK----EDTS----- 160
Query: 145 IIQGLEEKAVHNKDE------------------VYKILEKGSQKRQTAATLMNAHSSRSH 186
GL+ + H+++ V IL+K ++ R TA+T N HSSRSH
Sbjct: 161 --IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 218
Query: 187 TIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLG 246
+IF I + N+ G G LNLVDLAGS I S R RE NIN+SL LG
Sbjct: 219 SIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLG 275
Query: 247 RCITALVEKTP---HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
I AL + HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A
Sbjct: 276 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
Query: 304 HRA 306
+
Sbjct: 336 SKV 338
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 103
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 502
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 104 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 161/303 (53%), Gaps = 52/303 (17%)
Query: 27 TIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86
T VDV+K V L+ L GYN +FAYGQTG+GKTFTM +P GI+
Sbjct: 65 TNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML-------------NPGDGII 110
Query: 87 PRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
P ++H+F+ + L ++ V F+EIYNE ++DLL +D+ K ED++
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-SDNNNK----EDTS----- 160
Query: 145 IIQGLEEKAVHNKDE------------------VYKILEKGSQKRQTAATLMNAHSSRSH 186
GL+ + H+++ V IL+K ++ R TA+T N HSSRSH
Sbjct: 161 --IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSH 218
Query: 187 TIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLG 246
+IF I + N+ G G LNLVDLAGSE I S R RE NI +SL LG
Sbjct: 219 SIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLG 275
Query: 247 RCITALVEKTP---HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
I AL + HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A
Sbjct: 276 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
Query: 304 HRA 306
+
Sbjct: 336 SKV 338
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 103
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 502
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 104 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 161/303 (53%), Gaps = 52/303 (17%)
Query: 27 TIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86
T VDV+K V L+ L GYN +FAYGQTG+GKTFTM +P GI+
Sbjct: 65 TNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML-------------NPGDGII 110
Query: 87 PRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
P ++H+F+ + L ++ V F+EIYNE ++DLL +D+ K ED++
Sbjct: 111 PSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR-SDNNNK----EDTS----- 160
Query: 145 IIQGLEEKAVHNKDE------------------VYKILEKGSQKRQTAATLMNAHSSRSH 186
GL+ + H+++ V IL+K ++ R TA+T N HSS SH
Sbjct: 161 --IGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASH 218
Query: 187 TIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLG 246
+IF I + N+ G G LNLVDLAGSE I S R RE NIN+SL LG
Sbjct: 219 SIFIIHLS-GSNAKTGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLG 275
Query: 247 RCITALVEKTP---HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYA 303
I AL + HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A
Sbjct: 276 DVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
Query: 304 HRA 306
+
Sbjct: 336 SKV 338
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 16/110 (14%)
Query: 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSI 454
F FD++F Q+ VDV+K V L+ L GYN +FAYGQTG+GKTFTM
Sbjct: 54 FKFDKIFDQQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTML--------- 103
Query: 455 SWQDDPLSGIVPRAMNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLL 502
+P GI+P ++H+F+ + L ++ V F+EIYNE ++DLL
Sbjct: 104 ----NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 153/287 (53%), Gaps = 35/287 (12%)
Query: 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 95
+ L+ L GYN +FAYGQTG+GKT+TM + G++P ++H+F
Sbjct: 74 IRQLVQSSLDGYNVCIFAYGQTGSGKTYTML-------------NAGDGMIPMTLSHIFK 120
Query: 96 ELRLLGD--AEFTVRVSFLEIYNEELIDLL---SPTDDI------TKLRLFEDSARKGSV 144
L + + + ++EIYNE ++DLL D+I K + D ++G+
Sbjct: 121 WTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTY 180
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
I K + +V IL+K S+ R TAAT N SSRSH++F + HI +L E
Sbjct: 181 ITNVTRMKMT-STSQVDTILKKASKMRSTAATRSNERSSRSHSVFMV--HINGRNLHTGE 237
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP-----HI 259
+ GKLNLVDLAGSE I S +R RE NIN+SL LG I AL TP +I
Sbjct: 238 TSQ-GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL--NTPDAGKRYI 294
Query: 260 PYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRA 306
P+R SKLT LLQ SL G +KT + + P ++ ETL++L +A +
Sbjct: 295 PFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKV 341
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 24/192 (12%)
Query: 374 DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAY 433
+ ++ +TI +S F FD +F ++++ + L+ L GYN +FAY
Sbjct: 34 EAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAY 92
Query: 434 GQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGD--AEFTVRVSFL 491
GQTG+GKT+TM + G++P ++H+F L + + + ++
Sbjct: 93 GQTGSGKTYTML-------------NAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYI 139
Query: 492 EIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNEL 551
EIYNE ++DLL + E ++ + D++ EK G ++ N +M
Sbjct: 140 EIYNETILDLLR------DFKSHDNIDEILDSQKHDIRHDHEKQGTYIT--NVTRMKMTS 191
Query: 552 YAEVTSVEKKSS 563
++V ++ KK+S
Sbjct: 192 TSQVDTILKKAS 203
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 155/299 (51%), Gaps = 23/299 (7%)
Query: 19 FLVCIFYTTIVD---VYKYVVNPLI-DEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPS 74
F+V + VD VY+ + PLI D +G C+ FAYGQTG+GKT+TM G + S
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQS 111
Query: 75 ISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 133
D P GI A +F L + D + +SF EIY +L DLL + L
Sbjct: 112 ----DTP--GIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE 165
Query: 134 LFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITI 193
K V+++ L+ V K+E+ + G R+ N SSRSH I I +
Sbjct: 166 -----NGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL 220
Query: 194 HIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAG-NINQSLLTLGRCITAL 252
D + GK+ +DLAGSE + +Q+K+ + G NIN+SLL L CI A+
Sbjct: 221 K------DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAM 274
Query: 253 VEKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITN 311
HIP+R+S+LT++L+D G++K+ +IA +SP E+TL+TL Y+ R KN N
Sbjct: 275 DSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGN 333
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 356 QKMPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVD 409
+K PL+ +E+ K I+ ++ + I E R ++K F D+VF
Sbjct: 7 RKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFT 66
Query: 410 VYKYVVNPLI-DEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 468
VY+ + PLI D +G C+ FAYGQTG+GKT+TM G + S D P GI A
Sbjct: 67 VYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQS----DTP--GIFQYA 120
Query: 469 MNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLL 502
+F L + D + +SF EIY +L DLL
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL 155
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/198 (42%), Positives = 119/198 (60%), Gaps = 16/198 (8%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
TT VY ++ +VL GYN T+FAYGQT +GKT TMEG K +DP L GI
Sbjct: 56 TTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHDPQ-------LMGI 107
Query: 86 VPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
+PR + +FD + + + EF ++VS+ EIY +++ DLL + T L + ED R V
Sbjct: 108 IPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK--TNLAVHEDKNRVPYV 165
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
+G E+ V + +EV ++++G R A T MN HSSRSH+IF I IK +++ E+
Sbjct: 166 --KGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLIN--IKQENVETEK 221
Query: 205 LLRTGKLNLVDLAGSENI 222
L +GKL LVDLAGSE +
Sbjct: 222 KL-SGKLYLVDLAGSEKV 238
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 9/112 (8%)
Query: 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSND 451
K + FDRV + Q VY ++ +VL GYN T+FAYGQT +GKT TMEG K +D
Sbjct: 43 GKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG-KLHD 101
Query: 452 PSISWQDDPLSGIVPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLL 502
P L GI+PR + +FD + + + EF ++VS+ EIY +++ DLL
Sbjct: 102 PQ-------LMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLL 146
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 235 AGNINQSLLTLGRCITALVEKTP-HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNM 293
A NIN+SL LG I+AL E T H+PYR+SK+TR+LQDSL G +T+I+ SP+ N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 294 EETLSTLDYAHRAKNITNRPEINQKMS 320
ET STL + RAK I N +N +++
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLELT 87
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 239 NQSLLTLGRCITALVEKTP-HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETL 297
N+SL LG I+AL E T H+PYR+SK+TR+LQDSLGG +T+I+ SP+ N ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 298 STLDYAHRAKNITNRPEINQKMS 320
STL + RAK I N +N +++
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELT 83
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 387 VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446
VND ++K+ FD + +D +N D ++ G + YG G G M+G
Sbjct: 242 VNDSVTKS-KFDNKYGTRHSLIDG----INRGTDALIGGKKVLICGYGDVGKGCAEAMKG 296
Query: 447 EKSNDPSISWQDDPLSGIVPRAMNHLFDELRL---LGDAEFTV 486
+ + S++ + DP++ + +AM FD + + +GDA+ V
Sbjct: 297 QGAR-VSVT-EIDPINAL--QAMMEGFDVVTVEEAIGDADIVV 335
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 387 VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446
VND ++K+ FD + +D +N D ++ G + YG G G M+G
Sbjct: 241 VNDSVTKS-KFDNKYGTRHSLIDG----INRGTDALIGGKKVLICGYGDVGKGCAEAMKG 295
Query: 447 EKSNDPSISWQDDPLSGIVPRAMNHLFDELRL---LGDAEFTV 486
+ + S++ + DP++ + +AM FD + + +GDA+ V
Sbjct: 296 QGAR-VSVT-EIDPINAL--QAMMEGFDVVTVEEAIGDADIVV 334
>pdb|1VJC|A Chain A, Structure Of Pig Muscle Pgk Complexed With Mgatp
pdb|1VJD|A Chain A, Structure Of Pig Muscle Pgk Complexed With Atp
Length = 416
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 469 MNHLFD---ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLR 525
+N++ D E+ + G FT FL++ N I TS + EE K+
Sbjct: 223 INNMLDKVNEMIIGGGMAFT----FLKVLNNMEI-------------GTSLFDEEGSKIV 265
Query: 526 RDLQAAREKNGV-------FLAAENYDQMVNELYAEVTS 557
+DL + EKNGV F+ A+ +D+ A V S
Sbjct: 266 KDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVAS 304
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 387 VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTG 439
VND ++K+ FD ++ VD K D +++G C V YG G G
Sbjct: 179 VNDSVTKS-KFDNLYGCRESLVDGIKRAT----DVMIAGKTCCVCGYGDVGKG 226
>pdb|2ZGV|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Adp
pdb|3C39|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C39|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate
pdb|3C3A|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3A|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Adp
pdb|3C3B|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3B|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To D-Cdp
pdb|3C3C|A Chain A, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
pdb|3C3C|B Chain B, Crystal Structure Of Human Phosphoglycerate Kinase Bound
To 3-Phosphoglycerate And L-Cdp
Length = 420
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 469 MNHLFD---ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLR 525
+N++ D E+ + G FT FL++ N I TS + EE K+
Sbjct: 227 INNMLDKVNEMIIGGGMAFT----FLKVLNNMEIG-------------TSLFDEEGAKIV 269
Query: 526 RDLQAAREKNGV-------FLAAENYDQMVNELYAEVTS 557
+DL + EKNGV F+ A+ +D+ A V S
Sbjct: 270 KDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVAS 308
>pdb|2XE6|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Binary Complex With 3pg
pdb|2XE7|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Adp
pdb|2XE8|A Chain A, The Complete Reaction Cycle Of Human Phosphoglycerate
Kinase: The Open Ternary Complex With 3pg And Amp-Pnp
pdb|2YBE|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride At 2.0 A Resolution
Length = 417
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 469 MNHLFD---ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLR 525
+N++ D E+ + G FT FL++ N I TS + EE K+
Sbjct: 224 INNMLDKVNEMIIGGGMAFT----FLKVLNNMEIG-------------TSLFDEEGAKIV 266
Query: 526 RDLQAAREKNGV-------FLAAENYDQMVNELYAEVTS 557
+DL + EKNGV F+ A+ +D+ A V S
Sbjct: 267 KDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVAS 305
>pdb|2Y3I|A Chain A, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
pdb|2Y3I|D Chain D, The Structure Of The Fully Closed Conformation Of Human
Pgk In Complex With L-Adp, 3pg And The Tsa Aluminium
Tetrafluoride
Length = 416
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 469 MNHLFD---ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLR 525
+N++ D E+ + G FT FL++ N I TS + EE K+
Sbjct: 224 INNMLDKVNEMIIGGGMAFT----FLKVLNNMEIG-------------TSLFDEEGAKIV 266
Query: 526 RDLQAAREKNGV-------FLAAENYDQMVNELYAEVTS 557
+DL + EKNGV F+ A+ +D+ A V S
Sbjct: 267 KDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVAS 305
>pdb|2WZD|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Adp, 3pg And Aluminium Trifluoride
Length = 417
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 469 MNHLFD---ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLR 525
+N++ D E+ + G FT FL++ N I TS + EE K+
Sbjct: 224 INNMLDKVNEMIIGGGMAFT----FLKVLNNMEIG-------------TSLFDEEGAKIV 266
Query: 526 RDLQAAREKNGV-------FLAAENYDQMVNELYAEVTS 557
+DL + EKNGV F+ A+ +D+ A V S
Sbjct: 267 KDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVAS 305
>pdb|2WZB|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Magnesium Trifluoride
pdb|2WZC|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp, 3pg
And Aluminium Tetrafluoride
pdb|2X13|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
3phosphoglycerate
pdb|2X15|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase In Complex With Adp And
1,3- Bisphosphoglycerate
Length = 416
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 469 MNHLFD---ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLR 525
+N++ D E+ + G FT FL++ N I TS + EE K+
Sbjct: 223 INNMLDKVNEMIIGGGMAFT----FLKVLNNMEIG-------------TSLFDEEGAKIV 265
Query: 526 RDLQAAREKNGV-------FLAAENYDQMVNELYAEVTS 557
+DL + EKNGV F+ A+ +D+ A V S
Sbjct: 266 KDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVAS 304
>pdb|2X14|A Chain A, The Catalytically Active Fully Closed Conformation Of
Human Phosphoglycerate Kinase K219a Mutant In Complex
With Amp-Pcp And 3pg
Length = 416
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Query: 469 MNHLFD---ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLR 525
+N++ D E+ + G FT FL++ N I TS + EE K+
Sbjct: 223 INNMLDKVNEMIIGGGMAFT----FLKVLNNMEIG-------------TSLFDEEGAKIV 265
Query: 526 RDLQAAREKNGV-------FLAAENYDQMVNELYAEVTS 557
+DL + EKNGV F+ A+ +D+ A V S
Sbjct: 266 KDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVAS 304
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 251 ALVEKTPHIPYRESKLTRLLQDSLGGRT-KTSIIATVSPAQLN-------MEETLSTLDY 302
AL E HI K LL DS+ GR+ +++ +S +L ET+ + Y
Sbjct: 64 ALPEHEKHIFISNLKYQTLL-DSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSY 122
Query: 303 AHRAKNITNRPEI-------NQKMSKKA 323
H +NI N P + N+++ K+A
Sbjct: 123 THIIRNIVNDPSVVFDDIVTNEQIQKRA 150
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 251 ALVEKTPHIPYRESKLTRLLQDSLGGRT-KTSIIATVSPAQLN-------MEETLSTLDY 302
AL E HI K LL DS+ GR+ +++ +S +L ET+ + Y
Sbjct: 64 ALPEHEKHIFISNLKYQTLL-DSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSY 122
Query: 303 AHRAKNITNRPEI-------NQKMSKKA 323
H +NI N P + N+++ K+A
Sbjct: 123 THIIRNIVNDPSVVFDDIVTNEQIQKRA 150
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 251 ALVEKTPHIPYRESKLTRLLQDSLGGRT-KTSIIATVSPAQLN-------MEETLSTLDY 302
AL E HI K LL DS+ GR+ +++ +S +L ET+ + Y
Sbjct: 64 ALPEHEKHIFISNLKYQTLL-DSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSY 122
Query: 303 AHRAKNITNRPEI-------NQKMSKKA 323
H +NI N P + N+++ K+A
Sbjct: 123 THIIRNIVNDPSVVFDDIVTNEQIQKRA 150
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 251 ALVEKTPHIPYRESKLTRLLQDSLGGRT-KTSIIATVSPAQLN-------MEETLSTLDY 302
AL E HI K LL DS+ GR+ +++ +S +L ET+ + Y
Sbjct: 64 ALPEHEKHIFISNLKYQTLL-DSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSY 122
Query: 303 AHRAKNITNRPEI-------NQKMSKKA 323
H +NI N P + N+++ K+A
Sbjct: 123 THIIRNIVNDPSVVFDDIVTNEQIQKRA 150
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 251 ALVEKTPHIPYRESKLTRLLQDSLGGRT-KTSIIATVSPAQLN-------MEETLSTLDY 302
AL E HI K LL DS+ GR+ +++ +S +L ET+ + Y
Sbjct: 64 ALPEHEKHIFISNLKYQTLL-DSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSY 122
Query: 303 AHRAKNITNRPEI-------NQKMSKKA 323
H +NI N P + N+++ K+A
Sbjct: 123 THIIRNIVNDPSVVFDDIVTNEQIQKRA 150
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 251 ALVEKTPHIPYRESKLTRLLQDSLGGRT-KTSIIATVSPAQLN-------MEETLSTLDY 302
AL E HI K LL DS+ GR+ +++ +S +L ET+ + Y
Sbjct: 65 ALPEHEKHIFISNLKYQTLL-DSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSY 123
Query: 303 AHRAKNITNRPEI-------NQKMSKKA 323
H +NI N P + N+++ K+A
Sbjct: 124 THIIRNIVNDPSVVFDDIVTNEQIQKRA 151
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 251 ALVEKTPHIPYRESKLTRLLQDSLGGRT-KTSIIATVSPAQLN-------MEETLSTLDY 302
AL E HI K LL DS+ GR+ +++ +S +L ET+ + Y
Sbjct: 64 ALPEHEKHIFISNLKYQTLL-DSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSY 122
Query: 303 AHRAKNITNRPEI-------NQKMSKKA 323
H +NI N P + N+++ K+A
Sbjct: 123 THIIRNIVNDPSVVFDDIVTNEQIQKRA 150
>pdb|3PQA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3PQA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661
pdb|3RHD|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
pdb|3RHD|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase Gapn From Methanocaldococcus Jannaschii
Dsm 2661 Complexed With Nadp
Length = 486
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 21/121 (17%)
Query: 142 GSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLD 201
G+VI+ KA E+ KI+E +K + N + +
Sbjct: 158 GNVIVHHPSSKAPLVCIELAKIIENALKKYNVPLGVYNLLTGAGEVV------------- 204
Query: 202 GEELLRTGKLNLVDLAGSENIG----RSGAQDKRAREAGNINQSLLT----LGRCITALV 253
G+E++ K+N++ GS +G + K A E G +N +++ L + + AL+
Sbjct: 205 GDEIVVNEKVNMISFTGSSKVGELITKKAGFKKIALELGGVNPNIVLKDADLNKAVNALI 264
Query: 254 E 254
+
Sbjct: 265 K 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,462,146
Number of Sequences: 62578
Number of extensions: 698225
Number of successful extensions: 2564
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2088
Number of HSP's gapped (non-prelim): 198
length of query: 583
length of database: 14,973,337
effective HSP length: 104
effective length of query: 479
effective length of database: 8,465,225
effective search space: 4054842775
effective search space used: 4054842775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)