Query psy9448
Match_columns 583
No_of_seqs 490 out of 3024
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 19:35:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243|consensus 100.0 8.1E-89 1.8E-93 753.7 24.8 340 12-356 93-436 (1041)
2 KOG4280|consensus 100.0 5.1E-85 1.1E-89 696.7 20.0 318 14-346 52-371 (574)
3 KOG0245|consensus 100.0 3.5E-80 7.6E-85 671.8 16.5 318 13-343 46-380 (1221)
4 KOG0240|consensus 100.0 6.4E-77 1.4E-81 617.2 21.2 306 14-334 49-356 (607)
5 KOG0242|consensus 100.0 9.3E-77 2E-81 658.0 15.8 314 13-346 52-367 (675)
6 PLN03188 kinesin-12 family pro 100.0 4.7E-76 1E-80 657.6 17.5 321 14-340 132-469 (1320)
7 cd01373 KISc_KLP2_like Kinesin 100.0 2.9E-73 6.2E-78 593.4 18.3 288 14-309 41-337 (337)
8 cd01370 KISc_KIP3_like Kinesin 100.0 2.3E-73 5.1E-78 594.3 16.9 281 14-309 54-338 (338)
9 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.8E-72 3.9E-77 592.2 18.1 305 13-318 47-352 (352)
10 cd01368 KISc_KIF23_like Kinesi 100.0 8.9E-72 1.9E-76 583.6 17.4 279 11-307 52-345 (345)
11 KOG0241|consensus 100.0 1.2E-70 2.6E-75 587.0 20.2 314 14-342 53-382 (1714)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 8.1E-71 1.8E-75 579.9 16.7 291 13-316 47-356 (356)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.5E-69 3.3E-74 565.2 17.7 287 12-309 46-333 (333)
14 cd01367 KISc_KIF2_like Kinesin 100.0 1.5E-69 3.2E-74 562.4 17.0 271 14-307 51-322 (322)
15 cd01375 KISc_KIF9_like Kinesin 100.0 5.7E-69 1.2E-73 560.8 17.8 283 13-307 47-334 (334)
16 cd01376 KISc_KID_like Kinesin 100.0 6.6E-69 1.4E-73 557.2 16.9 273 14-307 47-319 (319)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 9E-69 1.9E-73 557.3 16.1 282 12-309 38-321 (321)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 3.3E-68 7.1E-73 558.0 17.8 290 14-310 40-341 (341)
19 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.2E-67 2.6E-72 550.0 17.1 281 14-309 43-325 (325)
20 cd01366 KISc_C_terminal Kinesi 100.0 2.1E-66 4.6E-71 541.7 17.2 283 13-312 44-329 (329)
21 KOG0239|consensus 100.0 1.3E-66 2.7E-71 574.9 16.1 284 15-315 361-646 (670)
22 PF00225 Kinesin: Kinesin moto 100.0 2E-66 4.2E-71 544.0 12.3 287 13-309 40-335 (335)
23 smart00129 KISc Kinesin motor, 100.0 6.2E-65 1.3E-69 532.4 17.3 287 14-316 46-335 (335)
24 cd00106 KISc Kinesin motor dom 100.0 1.5E-63 3.3E-68 520.7 17.6 281 13-307 44-328 (328)
25 KOG0244|consensus 100.0 3.2E-64 6.8E-69 549.8 9.2 315 16-344 34-350 (913)
26 KOG0246|consensus 100.0 9.3E-63 2E-67 509.6 16.1 285 14-314 258-546 (676)
27 KOG0247|consensus 100.0 1.5E-62 3.3E-67 521.7 17.5 295 7-315 74-442 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.6E-62 3.5E-67 540.4 14.5 379 13-494 55-438 (568)
29 cd01363 Motor_domain Myosin an 100.0 5.2E-48 1.1E-52 370.6 12.5 179 31-288 8-186 (186)
30 KOG0243|consensus 100.0 1.8E-43 4E-48 392.9 8.0 218 349-582 49-273 (1041)
31 KOG0245|consensus 100.0 2.8E-41 6.1E-46 368.5 9.5 200 354-582 9-223 (1221)
32 cd01370 KISc_KIP3_like Kinesin 100.0 9.8E-41 2.1E-45 348.7 8.2 199 355-583 6-219 (338)
33 KOG4280|consensus 100.0 9.1E-41 2E-45 357.2 6.9 201 354-583 10-219 (574)
34 KOG0240|consensus 100.0 5.5E-40 1.2E-44 342.0 9.0 198 355-582 13-216 (607)
35 cd01373 KISc_KLP2_like Kinesin 100.0 6.8E-40 1.5E-44 342.2 8.2 203 355-583 7-218 (337)
36 KOG0242|consensus 100.0 1.3E-39 2.7E-44 361.9 8.6 198 356-583 13-217 (675)
37 cd01368 KISc_KIF23_like Kinesi 100.0 1.5E-39 3.2E-44 340.5 8.1 200 355-583 7-220 (345)
38 cd01367 KISc_KIF2_like Kinesin 100.0 4.9E-39 1.1E-43 333.9 8.6 196 356-583 8-213 (322)
39 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.9E-38 4.1E-43 334.2 8.5 201 355-583 7-224 (356)
40 PLN03188 kinesin-12 family pro 100.0 4.1E-38 8.9E-43 353.5 8.2 201 353-583 102-312 (1320)
41 cd01364 KISc_BimC_Eg5 Kinesin 100.0 9.9E-38 2.1E-42 328.6 8.3 212 354-583 7-227 (352)
42 cd01376 KISc_KID_like Kinesin 100.0 9.2E-38 2E-42 324.2 6.9 196 355-583 6-210 (319)
43 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.8E-37 3.9E-42 323.2 8.8 199 355-583 8-211 (325)
44 cd01374 KISc_CENP_E Kinesin mo 100.0 1.2E-37 2.7E-42 323.8 7.3 195 355-583 6-204 (321)
45 cd01371 KISc_KIF3 Kinesin moto 100.0 1.7E-37 3.7E-42 324.1 8.1 202 355-583 7-216 (333)
46 KOG0246|consensus 100.0 2.9E-37 6.2E-42 320.5 7.4 205 353-582 212-428 (676)
47 KOG0239|consensus 100.0 1.9E-36 4.1E-41 335.3 9.8 274 242-583 243-527 (670)
48 cd01375 KISc_KIF9_like Kinesin 100.0 1.6E-36 3.4E-41 316.7 8.1 202 356-583 7-220 (334)
49 cd01372 KISc_KIF4 Kinesin moto 100.0 1.7E-36 3.8E-41 318.0 7.2 199 355-583 7-214 (341)
50 KOG0241|consensus 100.0 3.9E-36 8.4E-41 322.9 7.3 198 354-581 9-226 (1714)
51 cd01366 KISc_C_terminal Kinesi 100.0 8.3E-35 1.8E-39 303.8 7.6 195 355-583 8-213 (329)
52 KOG0247|consensus 100.0 9.3E-35 2E-39 310.0 7.3 201 356-583 38-316 (809)
53 PF00225 Kinesin: Kinesin moto 100.0 9.2E-36 2E-40 312.1 -0.3 201 356-583 1-215 (335)
54 smart00129 KISc Kinesin motor, 100.0 1.3E-34 2.9E-39 303.2 8.0 199 355-583 6-211 (335)
55 cd00106 KISc Kinesin motor dom 100.0 2.6E-34 5.7E-39 300.2 8.1 197 356-583 7-213 (328)
56 COG5059 KIP1 Kinesin-like prot 100.0 1.2E-29 2.5E-34 280.0 4.7 161 392-582 55-220 (568)
57 KOG0244|consensus 99.9 4.5E-29 9.8E-34 274.2 4.9 194 358-582 2-200 (913)
58 cd01363 Motor_domain Myosin an 99.7 2.3E-18 5E-23 165.2 5.0 50 410-471 8-57 (186)
59 COG0556 UvrB Helicase subunit 93.6 0.061 1.3E-06 58.2 3.5 92 15-119 4-100 (663)
60 COG0556 UvrB Helicase subunit 93.5 0.065 1.4E-06 58.0 3.6 136 393-541 3-140 (663)
61 COG2805 PilT Tfp pilus assembl 92.5 0.052 1.1E-06 55.0 1.1 30 36-65 113-142 (353)
62 PF00308 Bac_DnaA: Bacterial d 89.6 0.22 4.7E-06 49.0 2.3 51 393-446 3-53 (219)
63 COG2804 PulE Type II secretory 88.0 0.2 4.3E-06 54.5 0.8 31 37-67 247-277 (500)
64 PRK06893 DNA replication initi 87.1 0.37 8E-06 47.7 2.1 49 392-446 10-58 (229)
65 COG2805 PilT Tfp pilus assembl 87.0 0.26 5.7E-06 50.1 1.0 31 415-445 113-143 (353)
66 PF00308 Bac_DnaA: Bacterial d 84.4 0.32 6.9E-06 47.9 0.2 17 50-66 36-52 (219)
67 PRK06893 DNA replication initi 83.0 0.67 1.4E-05 45.9 1.8 28 40-67 31-58 (229)
68 PF13245 AAA_19: Part of AAA d 82.9 0.47 1E-05 38.3 0.5 26 40-66 3-28 (76)
69 PRK06620 hypothetical protein; 82.6 0.63 1.4E-05 45.6 1.4 52 392-447 10-64 (214)
70 COG1474 CDC6 Cdc6-related prot 82.1 0.88 1.9E-05 48.4 2.4 26 40-65 33-59 (366)
71 cd00009 AAA The AAA+ (ATPases 81.3 0.63 1.4E-05 41.0 0.8 29 37-65 8-36 (151)
72 PF04851 ResIII: Type III rest 80.8 0.69 1.5E-05 43.1 0.9 31 37-67 13-44 (184)
73 COG2804 PulE Type II secretory 79.9 0.7 1.5E-05 50.4 0.7 32 416-447 247-278 (500)
74 PRK10436 hypothetical protein; 79.8 0.68 1.5E-05 50.8 0.6 28 39-66 209-236 (462)
75 PRK06526 transposase; Provisio 79.7 0.34 7.4E-06 48.8 -1.6 18 50-67 100-117 (254)
76 PRK05642 DNA replication initi 78.6 1.4 3.1E-05 43.7 2.4 48 392-446 13-64 (234)
77 PF05673 DUF815: Protein of un 78.3 0.81 1.8E-05 45.5 0.5 25 41-65 44-69 (249)
78 TIGR02538 type_IV_pilB type IV 78.0 0.85 1.8E-05 51.5 0.7 29 39-67 307-335 (564)
79 PRK06526 transposase; Provisio 77.5 1 2.3E-05 45.3 1.1 18 429-446 100-117 (254)
80 TIGR02533 type_II_gspE general 77.3 1 2.2E-05 49.9 1.0 29 39-67 233-261 (486)
81 PRK09087 hypothetical protein; 77.3 1.1 2.4E-05 44.3 1.2 50 392-447 15-64 (226)
82 PRK06620 hypothetical protein; 77.2 1.2 2.6E-05 43.7 1.3 19 49-67 45-63 (214)
83 TIGR01420 pilT_fam pilus retra 76.5 1 2.2E-05 47.5 0.8 30 38-67 112-141 (343)
84 PRK12377 putative replication 76.4 1.3 2.8E-05 44.4 1.4 50 396-447 72-121 (248)
85 TIGR02525 plasmid_TraJ plasmid 76.3 1.1 2.3E-05 47.8 0.8 28 38-66 140-167 (372)
86 PRK08116 hypothetical protein; 76.3 0.97 2.1E-05 45.9 0.5 51 394-446 81-133 (268)
87 PF13401 AAA_22: AAA domain; P 76.3 0.73 1.6E-05 40.6 -0.4 18 48-65 4-21 (131)
88 cd01131 PilT Pilus retraction 76.0 0.83 1.8E-05 44.1 -0.1 18 49-66 2-19 (198)
89 PRK06835 DNA replication prote 75.6 1.4 3.1E-05 46.1 1.5 30 37-67 173-202 (329)
90 COG5008 PilU Tfp pilus assembl 75.6 1.6 3.4E-05 43.8 1.7 31 36-66 115-145 (375)
91 TIGR02524 dot_icm_DotB Dot/Icm 75.4 1.2 2.5E-05 47.3 0.8 28 40-67 126-153 (358)
92 TIGR02928 orc1/cdc6 family rep 75.4 1.2 2.5E-05 47.2 0.8 27 419-445 31-58 (365)
93 PF13604 AAA_30: AAA domain; P 75.4 1.2 2.7E-05 42.9 0.9 29 38-66 8-36 (196)
94 PRK12377 putative replication 75.2 0.92 2E-05 45.5 -0.0 38 28-67 83-120 (248)
95 cd00046 DEXDc DEAD-like helica 75.0 0.86 1.9E-05 39.7 -0.3 17 51-67 3-19 (144)
96 PF00437 T2SE: Type II/IV secr 75.0 0.98 2.1E-05 45.7 0.1 32 35-66 111-145 (270)
97 PF05673 DUF815: Protein of un 75.0 2.1 4.6E-05 42.6 2.5 45 395-444 24-69 (249)
98 PF04851 ResIII: Type III rest 74.9 1.3 2.9E-05 41.1 1.0 21 426-446 24-44 (184)
99 COG1474 CDC6 Cdc6-related prot 74.3 1.2 2.6E-05 47.3 0.6 22 424-445 39-60 (366)
100 PRK08084 DNA replication initi 74.0 1.7 3.7E-05 43.2 1.5 49 392-446 16-64 (235)
101 PRK14086 dnaA chromosomal repl 73.9 1.4 3.1E-05 49.6 1.1 54 391-447 281-334 (617)
102 smart00382 AAA ATPases associa 73.8 1 2.2E-05 39.2 -0.2 19 49-67 3-21 (148)
103 PF01695 IstB_IS21: IstB-like 73.6 1.8 3.9E-05 41.0 1.6 35 33-67 32-66 (178)
104 cd00009 AAA The AAA+ (ATPases 73.4 1.5 3.3E-05 38.5 0.9 27 418-444 10-36 (151)
105 cd01129 PulE-GspE PulE/GspE Th 73.2 1.5 3.3E-05 44.4 0.9 28 39-66 71-98 (264)
106 PRK05642 DNA replication initi 72.6 2 4.3E-05 42.7 1.6 19 49-67 46-64 (234)
107 PRK08727 hypothetical protein; 72.4 1.4 3E-05 43.7 0.5 19 49-67 42-60 (233)
108 KOG0989|consensus 72.2 1.6 3.4E-05 44.7 0.8 45 21-65 29-74 (346)
109 PRK07952 DNA replication prote 72.0 1.8 4E-05 43.3 1.2 50 395-446 69-118 (244)
110 PF01935 DUF87: Domain of unkn 72.0 1.1 2.4E-05 44.0 -0.3 15 51-65 26-40 (229)
111 PRK14088 dnaA chromosomal repl 71.8 1.5 3.2E-05 48.0 0.5 53 391-447 98-150 (440)
112 PRK00411 cdc6 cell division co 71.5 1.6 3.5E-05 46.6 0.8 21 425-445 53-73 (394)
113 PRK08181 transposase; Validate 71.3 2 4.3E-05 43.7 1.3 19 429-447 108-126 (269)
114 TIGR03420 DnaA_homol_Hda DnaA 71.0 2.7 5.8E-05 41.0 2.1 23 424-446 35-57 (226)
115 PRK14086 dnaA chromosomal repl 71.0 1.1 2.3E-05 50.6 -0.8 53 12-67 281-333 (617)
116 PF13245 AAA_19: Part of AAA d 70.6 1.6 3.5E-05 35.2 0.4 26 419-445 3-28 (76)
117 cd00046 DEXDc DEAD-like helica 70.0 1.3 2.8E-05 38.5 -0.3 18 430-447 3-20 (144)
118 PF00270 DEAD: DEAD/DEAH box h 70.0 3 6.5E-05 38.3 2.1 28 38-67 6-33 (169)
119 PRK08084 DNA replication initi 69.7 1.4 3E-05 43.8 -0.2 19 49-67 46-64 (235)
120 PF01637 Arch_ATPase: Archaeal 69.5 1.6 3.4E-05 42.4 0.1 30 37-66 9-38 (234)
121 PF00448 SRP54: SRP54-type pro 69.3 1.5 3.2E-05 42.4 -0.1 17 50-66 3-19 (196)
122 PRK08903 DnaA regulatory inact 69.3 3.1 6.6E-05 40.9 2.1 49 393-446 13-61 (227)
123 PF12846 AAA_10: AAA-like doma 69.1 1.5 3.2E-05 44.6 -0.2 19 48-66 1-19 (304)
124 PRK00149 dnaA chromosomal repl 69.1 1.8 3.8E-05 47.5 0.4 53 391-446 115-167 (450)
125 TIGR03420 DnaA_homol_Hda DnaA 68.9 2.7 5.9E-05 41.0 1.7 22 45-66 35-56 (226)
126 PRK08116 hypothetical protein; 68.6 2.5 5.5E-05 42.9 1.4 38 28-66 93-132 (268)
127 PF13401 AAA_22: AAA domain; P 68.4 1.4 3.1E-05 38.7 -0.4 18 427-444 4-21 (131)
128 TIGR00362 DnaA chromosomal rep 68.2 2.4 5.2E-05 45.7 1.2 53 391-446 103-155 (405)
129 PF01935 DUF87: Domain of unkn 67.9 1.5 3.2E-05 43.1 -0.4 17 429-445 25-41 (229)
130 PF13479 AAA_24: AAA domain 67.8 1.8 4E-05 42.2 0.2 20 48-67 3-22 (213)
131 TIGR02928 orc1/cdc6 family rep 67.7 1.4 3E-05 46.6 -0.7 27 39-65 30-57 (365)
132 PRK13894 conjugal transfer ATP 67.5 2.2 4.7E-05 44.5 0.7 28 37-65 138-165 (319)
133 PF13207 AAA_17: AAA domain; P 67.1 2.4 5.3E-05 36.8 0.8 16 50-65 1-16 (121)
134 TIGR02782 TrbB_P P-type conjug 67.0 2.2 4.9E-05 44.0 0.7 30 36-66 121-150 (299)
135 PF00004 AAA: ATPase family as 66.9 2.2 4.7E-05 37.4 0.5 15 51-65 1-15 (132)
136 TIGR03015 pepcterm_ATPase puta 66.7 2.2 4.7E-05 42.9 0.5 23 44-66 39-61 (269)
137 COG1484 DnaC DNA replication p 66.7 2.7 5.9E-05 42.3 1.2 39 405-446 86-124 (254)
138 PF01695 IstB_IS21: IstB-like 66.3 3.2 7E-05 39.3 1.6 20 427-446 47-66 (178)
139 PRK08181 transposase; Validate 66.3 2.6 5.5E-05 42.9 0.9 21 45-67 105-125 (269)
140 PRK07952 DNA replication prote 66.2 1.8 3.9E-05 43.3 -0.2 29 38-67 90-118 (244)
141 PHA00729 NTP-binding motif con 66.0 3.7 8.1E-05 40.5 2.0 31 36-66 5-35 (226)
142 PRK08727 hypothetical protein; 66.0 2.3 4.9E-05 42.2 0.4 19 428-446 42-60 (233)
143 PRK10436 hypothetical protein; 66.0 2.4 5.2E-05 46.5 0.7 29 418-446 209-237 (462)
144 PF00437 T2SE: Type II/IV secr 65.9 2.3 5E-05 43.0 0.5 29 417-445 114-145 (270)
145 PF13086 AAA_11: AAA domain; P 65.7 2.3 5E-05 41.2 0.4 27 39-66 9-35 (236)
146 TIGR02538 type_IV_pilB type IV 65.4 2.4 5.2E-05 47.9 0.6 29 418-446 307-335 (564)
147 COG0593 DnaA ATPase involved i 65.3 1.8 4E-05 46.4 -0.4 19 48-66 113-131 (408)
148 TIGR02533 type_II_gspE general 65.1 2.7 5.9E-05 46.5 0.9 29 418-446 233-261 (486)
149 PRK14087 dnaA chromosomal repl 65.1 1.9 4.1E-05 47.3 -0.3 51 394-447 111-161 (450)
150 PRK14088 dnaA chromosomal repl 65.0 2 4.3E-05 47.0 -0.2 19 47-66 130-148 (440)
151 PF13671 AAA_33: AAA domain; P 64.1 2.8 6E-05 37.5 0.6 17 50-66 1-17 (143)
152 smart00763 AAA_PrkA PrkA AAA d 63.8 6.4 0.00014 41.6 3.3 46 47-96 77-143 (361)
153 PTZ00112 origin recognition co 63.7 2.6 5.6E-05 49.3 0.4 28 38-65 769-798 (1164)
154 PF02562 PhoH: PhoH-like prote 63.7 3.8 8.2E-05 39.8 1.5 26 39-66 12-37 (205)
155 PF12846 AAA_10: AAA-like doma 63.7 2.1 4.6E-05 43.4 -0.3 19 427-445 1-19 (304)
156 PRK08903 DnaA regulatory inact 63.5 4.3 9.2E-05 39.8 1.9 21 46-66 40-60 (227)
157 TIGR01420 pilT_fam pilus retra 63.4 2.9 6.2E-05 44.1 0.6 30 417-446 112-141 (343)
158 PRK13900 type IV secretion sys 63.0 3 6.6E-05 43.7 0.8 28 38-66 151-178 (332)
159 PRK06835 DNA replication prote 62.9 3.8 8.2E-05 42.9 1.4 30 416-446 173-202 (329)
160 PRK08939 primosomal protein Dn 62.8 3 6.5E-05 43.3 0.6 41 406-447 135-176 (306)
161 PF13191 AAA_16: AAA ATPase do 62.7 1.6 3.5E-05 40.8 -1.2 22 44-65 20-41 (185)
162 cd01130 VirB11-like_ATPase Typ 62.7 3.3 7.1E-05 39.4 0.8 30 36-66 14-43 (186)
163 smart00382 AAA ATPases associa 62.5 2.3 4.9E-05 36.9 -0.3 19 428-446 3-21 (148)
164 PRK09183 transposase/IS protei 62.4 3.2 6.9E-05 41.9 0.8 18 429-446 104-121 (259)
165 smart00053 DYNc Dynamin, GTPas 62.4 12 0.00027 37.3 4.9 53 154-222 86-138 (240)
166 PRK12402 replication factor C 61.8 3.3 7.2E-05 43.0 0.8 22 45-66 33-54 (337)
167 PRK09087 hypothetical protein; 61.7 4.7 0.0001 39.8 1.8 19 48-66 44-62 (226)
168 PRK08939 primosomal protein Dn 61.6 2.2 4.7E-05 44.3 -0.6 39 28-67 136-175 (306)
169 COG1201 Lhr Lhr-like helicases 61.6 5.5 0.00012 46.5 2.5 56 38-115 29-85 (814)
170 PRK00411 cdc6 cell division co 60.8 3 6.5E-05 44.6 0.3 20 46-65 53-72 (394)
171 KOG0989|consensus 60.8 4.3 9.3E-05 41.6 1.3 34 411-444 40-74 (346)
172 TIGR00362 DnaA chromosomal rep 60.7 3.5 7.6E-05 44.5 0.7 17 50-66 138-154 (405)
173 PF13604 AAA_30: AAA domain; P 60.6 3.6 7.7E-05 39.6 0.7 29 418-446 9-37 (196)
174 PRK13833 conjugal transfer pro 60.6 3.6 7.7E-05 43.0 0.7 28 37-65 134-161 (323)
175 COG5008 PilU Tfp pilus assembl 60.5 5 0.00011 40.4 1.7 30 415-444 115-144 (375)
176 PRK06921 hypothetical protein; 60.4 5 0.00011 40.7 1.7 20 48-67 117-136 (266)
177 TIGR02524 dot_icm_DotB Dot/Icm 60.2 3.6 7.8E-05 43.6 0.7 24 423-446 130-153 (358)
178 cd01131 PilT Pilus retraction 60.1 2.8 6E-05 40.5 -0.2 18 428-445 2-19 (198)
179 TIGR02525 plasmid_TraJ plasmid 60.0 3.6 7.8E-05 43.9 0.6 20 426-445 148-167 (372)
180 PF00580 UvrD-helicase: UvrD/R 59.8 3.4 7.5E-05 42.1 0.5 25 43-67 8-32 (315)
181 PRK06547 hypothetical protein; 59.5 5.8 0.00013 37.4 1.9 29 37-65 4-32 (172)
182 cd01129 PulE-GspE PulE/GspE Th 59.3 4 8.7E-05 41.3 0.8 28 418-445 71-98 (264)
183 COG4962 CpaF Flp pilus assembl 59.1 3.9 8.4E-05 42.7 0.7 29 37-66 163-191 (355)
184 PF05970 PIF1: PIF1-like helic 59.1 2.8 6.1E-05 44.6 -0.3 36 405-444 4-39 (364)
185 PF05970 PIF1: PIF1-like helic 58.9 1.9 4E-05 45.9 -1.8 37 25-65 3-39 (364)
186 PF00910 RNA_helicase: RNA hel 58.6 2.3 5E-05 36.5 -0.9 15 51-65 1-15 (107)
187 PF13479 AAA_24: AAA domain 58.4 3.8 8.2E-05 40.0 0.5 20 427-446 3-22 (213)
188 PF07724 AAA_2: AAA domain (Cd 58.3 3.6 7.7E-05 38.8 0.2 17 49-65 4-20 (171)
189 TIGR02782 TrbB_P P-type conjug 58.2 4 8.8E-05 42.1 0.7 29 416-445 122-150 (299)
190 COG1223 Predicted ATPase (AAA+ 58.2 3.4 7.3E-05 41.4 0.1 17 49-65 152-168 (368)
191 PRK00149 dnaA chromosomal repl 58.0 4.3 9.3E-05 44.5 0.9 17 50-66 150-166 (450)
192 PF00270 DEAD: DEAD/DEAH box h 57.9 6.6 0.00014 35.9 2.0 27 418-446 7-33 (169)
193 PTZ00454 26S protease regulato 57.3 8.3 0.00018 41.5 2.9 50 395-444 142-196 (398)
194 PF01637 Arch_ATPase: Archaeal 57.0 3.9 8.5E-05 39.5 0.3 30 416-445 9-38 (234)
195 PF01580 FtsK_SpoIIIE: FtsK/Sp 57.0 3 6.6E-05 40.2 -0.5 17 50-66 40-56 (205)
196 PF03215 Rad17: Rad17 cell cyc 56.9 4.7 0.0001 45.0 0.9 30 36-65 31-62 (519)
197 TIGR01242 26Sp45 26S proteasom 56.8 15 0.00033 38.9 4.7 19 428-446 157-175 (364)
198 PF13238 AAA_18: AAA domain; P 56.7 4.5 9.7E-05 35.1 0.6 15 51-65 1-15 (129)
199 COG1125 OpuBA ABC-type proline 56.3 2.7 5.9E-05 42.0 -0.9 14 52-65 31-44 (309)
200 smart00487 DEXDc DEAD-like hel 56.2 5.1 0.00011 37.1 0.9 28 39-67 16-43 (201)
201 PRK13851 type IV secretion sys 56.2 3.5 7.6E-05 43.5 -0.2 30 37-67 152-181 (344)
202 PF00004 AAA: ATPase family as 56.0 4.4 9.6E-05 35.3 0.4 15 430-444 1-15 (132)
203 PRK09183 transposase/IS protei 55.6 4.9 0.00011 40.6 0.8 18 50-67 104-121 (259)
204 PRK13894 conjugal transfer ATP 55.3 4.9 0.00011 41.9 0.7 29 416-445 138-166 (319)
205 PF00448 SRP54: SRP54-type pro 55.3 3.7 8.1E-05 39.6 -0.2 17 429-445 3-19 (196)
206 PTZ00112 origin recognition co 55.2 4.9 0.00011 47.1 0.7 20 425-444 779-798 (1164)
207 TIGR03499 FlhF flagellar biosy 55.1 3.8 8.2E-05 42.0 -0.2 18 49-66 195-212 (282)
208 TIGR00631 uvrb excinuclease AB 54.5 5.9 0.00013 45.6 1.2 93 395-498 2-97 (655)
209 COG0593 DnaA ATPase involved i 54.2 3.7 8E-05 44.1 -0.4 76 391-473 80-155 (408)
210 PHA00729 NTP-binding motif con 53.9 7.8 0.00017 38.2 1.8 31 416-446 6-36 (226)
211 PRK13764 ATPase; Provisional 53.9 5.1 0.00011 45.3 0.6 21 46-66 255-275 (602)
212 COG2607 Predicted ATPase (AAA+ 53.9 23 0.0005 35.3 5.0 22 420-441 77-99 (287)
213 TIGR02881 spore_V_K stage V sp 53.5 4.4 9.5E-05 40.8 -0.0 19 48-66 42-60 (261)
214 PF13207 AAA_17: AAA domain; P 53.3 5.9 0.00013 34.3 0.8 15 429-443 1-15 (121)
215 PRK12723 flagellar biosynthesi 53.2 4.2 9E-05 43.6 -0.2 19 48-66 174-192 (388)
216 KOG2228|consensus 53.1 14 0.0003 38.6 3.5 73 421-493 43-120 (408)
217 PF07728 AAA_5: AAA domain (dy 52.8 6.8 0.00015 35.0 1.1 15 51-65 2-16 (139)
218 PRK14722 flhF flagellar biosyn 51.8 4.7 0.0001 42.9 -0.1 19 48-66 137-155 (374)
219 PHA02544 44 clamp loader, smal 51.3 5.5 0.00012 41.1 0.3 49 18-66 11-61 (316)
220 PRK14087 dnaA chromosomal repl 51.2 4.4 9.5E-05 44.4 -0.4 17 50-66 143-159 (450)
221 PRK12402 replication factor C 51.2 6.7 0.00015 40.7 1.0 22 424-445 33-54 (337)
222 PRK04328 hypothetical protein; 51.2 9.9 0.00021 38.1 2.1 27 37-63 9-38 (249)
223 PRK10536 hypothetical protein; 51.1 8.2 0.00018 38.9 1.5 19 48-66 74-92 (262)
224 TIGR00631 uvrb excinuclease AB 51.1 9 0.00019 44.1 2.0 85 22-119 8-97 (655)
225 PF06414 Zeta_toxin: Zeta toxi 51.1 4.8 0.0001 38.7 -0.2 20 47-66 14-33 (199)
226 PF00735 Septin: Septin; Inte 51.0 6.9 0.00015 40.0 1.0 21 45-65 1-21 (281)
227 PRK13833 conjugal transfer pro 50.8 6.1 0.00013 41.3 0.6 28 417-445 135-162 (323)
228 PF02562 PhoH: PhoH-like prote 50.7 8.1 0.00018 37.6 1.3 20 426-445 18-37 (205)
229 KOG2373|consensus 50.6 14 0.00031 38.5 3.1 28 38-66 261-291 (514)
230 COG1219 ClpX ATP-dependent pro 50.5 6.3 0.00014 40.7 0.6 16 49-64 98-113 (408)
231 PF00910 RNA_helicase: RNA hel 50.1 3.8 8.2E-05 35.2 -0.9 15 430-444 1-15 (107)
232 PRK11776 ATP-dependent RNA hel 50.1 9.6 0.00021 41.8 2.0 25 38-64 33-57 (460)
233 TIGR03015 pepcterm_ATPase puta 50.0 7.2 0.00016 39.1 1.0 19 427-445 43-61 (269)
234 PF13671 AAA_33: AAA domain; P 50.0 6.6 0.00014 35.0 0.6 16 430-445 2-17 (143)
235 cd01130 VirB11-like_ATPase Typ 49.6 6.8 0.00015 37.2 0.7 30 415-445 14-43 (186)
236 COG1484 DnaC DNA replication p 49.6 6.3 0.00014 39.7 0.4 36 29-67 89-124 (254)
237 PF13086 AAA_11: AAA domain; P 49.6 5.9 0.00013 38.2 0.2 18 429-446 19-36 (236)
238 PF13555 AAA_29: P-loop contai 49.1 5.2 0.00011 31.0 -0.2 15 51-65 26-40 (62)
239 PRK06921 hypothetical protein; 48.8 6.9 0.00015 39.7 0.6 21 427-447 117-137 (266)
240 cd00268 DEADc DEAD-box helicas 48.6 11 0.00025 35.8 2.0 26 38-65 28-53 (203)
241 PF02456 Adeno_IVa2: Adenoviru 48.6 6.3 0.00014 40.5 0.3 200 50-292 89-321 (369)
242 PTZ00424 helicase 45; Provisio 48.2 10 0.00023 40.4 1.9 26 38-65 57-82 (401)
243 KOG3859|consensus 48.1 8.7 0.00019 38.8 1.1 34 32-65 25-59 (406)
244 KOG2543|consensus 48.1 5.5 0.00012 42.1 -0.3 17 49-65 31-47 (438)
245 PRK12422 chromosomal replicati 48.0 5.4 0.00012 43.6 -0.4 17 50-66 143-159 (445)
246 PF01580 FtsK_SpoIIIE: FtsK/Sp 47.9 5 0.00011 38.6 -0.6 17 429-445 40-56 (205)
247 PF13191 AAA_16: AAA ATPase do 47.9 6.2 0.00014 36.7 0.1 23 423-445 20-42 (185)
248 COG1222 RPT1 ATP-dependent 26S 47.8 7.9 0.00017 40.6 0.8 34 30-63 162-200 (406)
249 PF07693 KAP_NTPase: KAP famil 47.6 6.7 0.00014 40.6 0.3 20 425-444 18-37 (325)
250 TIGR02237 recomb_radB DNA repa 47.6 9.8 0.00021 36.6 1.4 25 41-65 2-29 (209)
251 PRK11331 5-methylcytosine-spec 47.1 9.2 0.0002 41.7 1.2 30 34-65 182-211 (459)
252 COG1419 FlhF Flagellar GTP-bin 46.9 7.3 0.00016 41.6 0.4 18 48-65 203-220 (407)
253 KOG0335|consensus 46.8 5.7 0.00012 43.2 -0.4 18 51-68 114-131 (482)
254 PF00063 Myosin_head: Myosin h 46.7 6.6 0.00014 45.5 0.1 21 45-65 82-102 (689)
255 cd01123 Rad51_DMC1_radA Rad51_ 45.7 13 0.00027 36.5 1.9 30 36-65 4-36 (235)
256 COG4096 HsdR Type I site-speci 45.7 17 0.00037 42.1 3.1 32 35-67 173-204 (875)
257 PF00580 UvrD-helicase: UvrD/R 45.7 7.6 0.00017 39.5 0.3 21 426-446 12-32 (315)
258 PRK03992 proteasome-activating 45.6 5.4 0.00012 42.8 -0.8 18 427-444 165-182 (389)
259 TIGR01242 26Sp45 26S proteasom 45.3 6.6 0.00014 41.7 -0.2 18 49-66 157-174 (364)
260 COG1219 ClpX ATP-dependent pro 45.0 8.6 0.00019 39.7 0.6 16 427-442 97-112 (408)
261 PLN03025 replication factor C 44.8 10 0.00023 39.3 1.2 28 40-67 25-53 (319)
262 PRK10536 hypothetical protein; 44.7 12 0.00026 37.7 1.6 42 394-445 51-92 (262)
263 PRK11192 ATP-dependent RNA hel 44.6 13 0.00028 40.3 2.0 26 38-65 30-55 (434)
264 KOG0340|consensus 44.4 19 0.00041 37.7 2.9 29 38-68 36-64 (442)
265 PF00158 Sigma54_activat: Sigm 44.3 35 0.00076 31.9 4.6 100 45-172 19-125 (168)
266 smart00763 AAA_PrkA PrkA AAA d 44.3 28 0.00062 36.8 4.3 31 534-564 236-266 (361)
267 PRK06547 hypothetical protein; 44.2 14 0.0003 34.8 1.8 27 418-444 6-32 (172)
268 PRK13851 type IV secretion sys 44.1 7 0.00015 41.2 -0.2 20 427-446 162-181 (344)
269 PF12775 AAA_7: P-loop contain 43.9 15 0.00032 37.4 2.1 26 39-65 25-50 (272)
270 PRK00440 rfc replication facto 43.5 10 0.00022 39.0 0.9 26 40-65 29-55 (319)
271 PLN00020 ribulose bisphosphate 43.2 11 0.00025 40.0 1.1 86 393-478 110-205 (413)
272 TIGR00348 hsdR type I site-spe 43.2 11 0.00024 43.5 1.2 31 36-67 247-282 (667)
273 PF07724 AAA_2: AAA domain (Cd 43.2 10 0.00022 35.7 0.8 17 428-444 4-20 (171)
274 smart00487 DEXDc DEAD-like hel 43.1 10 0.00022 35.0 0.8 28 419-447 17-44 (201)
275 TIGR01359 UMP_CMP_kin_fam UMP- 43.0 9.4 0.0002 35.8 0.5 15 51-65 2-16 (183)
276 PRK13341 recombination factor 43.0 12 0.00026 43.5 1.4 23 45-67 49-71 (725)
277 COG1223 Predicted ATPase (AAA+ 42.9 8.2 0.00018 38.8 0.0 53 427-479 151-209 (368)
278 PF07728 AAA_5: AAA domain (dy 42.9 12 0.00026 33.4 1.1 15 430-444 2-16 (139)
279 COG5019 CDC3 Septin family pro 42.7 14 0.0003 38.9 1.6 19 45-63 20-38 (373)
280 KOG0729|consensus 42.6 12 0.00026 37.7 1.1 54 46-100 207-269 (435)
281 COG4962 CpaF Flp pilus assembl 42.5 9.8 0.00021 39.8 0.5 27 417-444 164-190 (355)
282 cd02021 GntK Gluconate kinase 42.5 9.7 0.00021 34.4 0.5 15 51-65 2-16 (150)
283 KOG2543|consensus 42.3 8.5 0.00018 40.7 0.1 19 426-444 29-47 (438)
284 PF13173 AAA_14: AAA domain 42.3 7.8 0.00017 34.3 -0.2 18 49-66 3-20 (128)
285 PRK10590 ATP-dependent RNA hel 42.2 15 0.00033 40.2 2.0 26 38-65 30-55 (456)
286 PF05729 NACHT: NACHT domain 42.2 8.2 0.00018 35.0 -0.1 16 50-65 2-17 (166)
287 PF06048 DUF927: Domain of unk 42.0 8.7 0.00019 39.4 0.1 32 33-65 179-210 (286)
288 PRK13342 recombination factor 42.0 14 0.0003 40.1 1.6 28 39-66 27-54 (413)
289 COG1126 GlnQ ABC-type polar am 41.8 7.4 0.00016 38.1 -0.4 15 51-65 31-45 (240)
290 PRK07261 topology modulation p 41.8 10 0.00022 35.6 0.5 15 51-65 3-17 (171)
291 TIGR01618 phage_P_loop phage n 41.8 11 0.00023 37.2 0.6 21 48-68 12-32 (220)
292 cd01126 TraG_VirD4 The TraG/Tr 41.8 14 0.00031 39.4 1.7 16 51-66 2-17 (384)
293 TIGR03499 FlhF flagellar biosy 41.7 8.1 0.00017 39.5 -0.2 17 429-445 196-212 (282)
294 PHA01747 putative ATP-dependen 41.7 9.5 0.00021 40.3 0.3 32 36-67 178-209 (425)
295 cd01381 MYSc_type_VII Myosin m 41.7 17 0.00037 41.9 2.4 21 45-65 83-103 (671)
296 PRK09361 radB DNA repair and r 41.5 18 0.00039 35.2 2.3 30 36-65 8-40 (225)
297 PRK04195 replication factor C 41.5 15 0.00033 40.6 1.9 29 37-65 27-56 (482)
298 KOG1803|consensus 41.4 13 0.00028 41.5 1.3 27 39-66 193-219 (649)
299 PF05496 RuvB_N: Holliday junc 41.4 17 0.00037 35.9 2.0 40 401-441 23-64 (233)
300 PRK00131 aroK shikimate kinase 41.4 11 0.00024 34.7 0.7 17 49-65 5-21 (175)
301 PRK04837 ATP-dependent RNA hel 41.2 15 0.00033 39.7 1.9 26 38-65 37-62 (423)
302 PRK08118 topology modulation p 41.1 11 0.00023 35.3 0.5 13 51-63 4-16 (167)
303 KOG0739|consensus 41.1 11 0.00023 38.7 0.5 47 19-65 133-183 (439)
304 TIGR00376 DNA helicase, putati 41.0 12 0.00026 43.0 0.9 28 39-67 165-192 (637)
305 PF00735 Septin: Septin; Inte 41.0 12 0.00026 38.2 1.0 19 424-442 1-19 (281)
306 PF02456 Adeno_IVa2: Adenoviru 41.0 9.7 0.00021 39.2 0.2 16 430-445 90-105 (369)
307 PF13238 AAA_18: AAA domain; P 40.9 13 0.00028 32.1 1.1 14 430-443 1-14 (129)
308 PRK06067 flagellar accessory p 40.7 16 0.00034 36.0 1.7 30 36-65 10-42 (234)
309 cd01120 RecA-like_NTPases RecA 40.5 11 0.00023 34.0 0.4 16 51-66 2-17 (165)
310 PF10236 DAP3: Mitochondrial r 40.4 12 0.00025 38.9 0.7 22 45-66 20-41 (309)
311 PRK13764 ATPase; Provisional 40.4 11 0.00023 42.8 0.5 21 426-446 256-276 (602)
312 PRK12723 flagellar biosynthesi 40.4 8.6 0.00019 41.2 -0.3 19 427-445 174-192 (388)
313 PRK11448 hsdR type I restricti 40.4 11 0.00023 46.1 0.5 30 37-67 423-452 (1123)
314 cd01384 MYSc_type_XI Myosin mo 40.3 16 0.00035 42.1 1.9 21 45-65 85-105 (674)
315 cd00820 PEPCK_HprK Phosphoenol 40.1 9.4 0.0002 33.0 -0.0 17 49-65 16-32 (107)
316 TIGR02788 VirB11 P-type DNA tr 39.9 12 0.00027 38.6 0.9 29 37-66 134-162 (308)
317 cd01378 MYSc_type_I Myosin mot 39.9 18 0.00039 41.8 2.2 21 45-65 83-103 (674)
318 cd01387 MYSc_type_XV Myosin mo 39.9 19 0.00042 41.6 2.4 21 45-65 84-104 (677)
319 TIGR02881 spore_V_K stage V sp 39.9 9.9 0.00022 38.2 0.1 19 427-445 42-60 (261)
320 TIGR02903 spore_lon_C ATP-depe 39.8 16 0.00035 41.7 1.8 30 36-65 163-192 (615)
321 PF03215 Rad17: Rad17 cell cyc 39.8 12 0.00026 41.8 0.7 30 415-444 31-62 (519)
322 PRK05703 flhF flagellar biosyn 39.6 9.5 0.00021 41.5 -0.1 18 49-66 222-239 (424)
323 PF00063 Myosin_head: Myosin h 39.5 11 0.00025 43.6 0.5 22 423-444 81-102 (689)
324 PHA02544 44 clamp loader, smal 39.3 18 0.00039 37.3 2.0 23 424-446 39-62 (316)
325 CHL00181 cbbX CbbX; Provisiona 39.3 11 0.00025 38.5 0.5 15 51-65 62-76 (287)
326 PRK03992 proteasome-activating 39.3 12 0.00025 40.3 0.5 18 48-65 165-182 (389)
327 cd00464 SK Shikimate kinase (S 39.1 12 0.00025 33.9 0.4 16 50-65 1-16 (154)
328 cd01385 MYSc_type_IX Myosin mo 38.9 17 0.00038 42.0 1.9 21 45-65 91-111 (692)
329 KOG0926|consensus 38.8 16 0.00034 42.2 1.5 18 48-65 271-288 (1172)
330 PRK11776 ATP-dependent RNA hel 38.6 18 0.00039 39.6 1.9 24 418-443 34-57 (460)
331 PF13476 AAA_23: AAA domain; P 38.5 11 0.00023 35.5 0.1 17 49-65 20-36 (202)
332 TIGR00635 ruvB Holliday juncti 38.4 12 0.00026 38.4 0.4 17 50-66 32-48 (305)
333 TIGR01313 therm_gnt_kin carboh 38.3 10 0.00022 34.9 -0.1 14 51-64 1-14 (163)
334 cd00124 MYSc Myosin motor doma 38.2 17 0.00037 42.1 1.7 26 40-65 77-103 (679)
335 TIGR00635 ruvB Holliday juncti 38.2 11 0.00024 38.6 0.2 18 428-445 31-48 (305)
336 PHA02653 RNA helicase NPH-II; 38.2 20 0.00043 41.4 2.2 25 38-64 171-195 (675)
337 PF06309 Torsin: Torsin; Inte 38.1 14 0.0003 33.0 0.7 16 50-65 55-70 (127)
338 TIGR02640 gas_vesic_GvpN gas v 38.1 19 0.00041 36.3 1.8 27 37-65 12-38 (262)
339 PHA02624 large T antigen; Prov 38.1 18 0.00038 40.9 1.7 30 36-65 417-448 (647)
340 PF06414 Zeta_toxin: Zeta toxi 38.0 10 0.00022 36.5 -0.2 20 426-445 14-33 (199)
341 TIGR03819 heli_sec_ATPase heli 37.8 14 0.00031 38.9 0.9 31 35-66 166-196 (340)
342 PRK04328 hypothetical protein; 37.8 21 0.00045 35.7 2.1 26 416-441 9-37 (249)
343 TIGR00614 recQ_fam ATP-depende 37.7 21 0.00045 39.3 2.2 27 37-65 17-43 (470)
344 smart00242 MYSc Myosin. Large 37.7 14 0.0003 42.8 0.8 21 45-65 89-109 (677)
345 PRK00080 ruvB Holliday junctio 37.5 12 0.00026 39.0 0.3 18 49-66 52-69 (328)
346 KOG0652|consensus 37.4 15 0.00032 36.9 0.9 14 50-63 207-220 (424)
347 PRK06995 flhF flagellar biosyn 37.3 10 0.00023 41.7 -0.2 18 49-66 257-274 (484)
348 cd01428 ADK Adenylate kinase ( 37.1 13 0.00029 35.0 0.5 15 51-65 2-16 (194)
349 PRK13900 type IV secretion sys 37.0 9.9 0.00021 39.9 -0.4 28 417-445 151-178 (332)
350 cd01383 MYSc_type_VIII Myosin 36.8 17 0.00036 42.1 1.3 21 45-65 89-109 (677)
351 PRK14722 flhF flagellar biosyn 36.8 11 0.00024 40.2 -0.1 20 427-446 137-156 (374)
352 cd01380 MYSc_type_V Myosin mot 36.6 19 0.00042 41.7 1.8 21 45-65 83-103 (691)
353 cd01377 MYSc_type_II Myosin mo 36.5 19 0.0004 41.8 1.7 21 45-65 88-108 (693)
354 KOG1547|consensus 36.5 24 0.00052 35.0 2.1 32 34-65 31-63 (336)
355 CHL00081 chlI Mg-protoporyphyr 36.5 13 0.00027 39.4 0.3 46 393-446 12-57 (350)
356 PRK11634 ATP-dependent RNA hel 36.3 21 0.00046 40.9 2.0 25 39-65 36-60 (629)
357 PTZ00424 helicase 45; Provisio 36.3 20 0.00044 38.2 1.8 27 416-444 56-82 (401)
358 cd01124 KaiC KaiC is a circadi 36.1 16 0.00035 34.2 0.9 15 51-65 2-16 (187)
359 COG0606 Predicted ATPase with 36.1 14 0.0003 40.3 0.4 16 51-66 201-216 (490)
360 TIGR02322 phosphon_PhnN phosph 35.9 11 0.00025 35.2 -0.2 16 50-65 3-18 (179)
361 KOG3859|consensus 35.8 17 0.00036 36.9 0.9 27 418-444 32-59 (406)
362 TIGR02880 cbbX_cfxQ probable R 35.8 14 0.00031 37.8 0.5 16 50-65 60-75 (284)
363 PRK14961 DNA polymerase III su 35.7 16 0.00035 38.7 1.0 30 36-65 25-55 (363)
364 cd01382 MYSc_type_VI Myosin mo 35.7 20 0.00043 41.8 1.7 21 45-65 88-108 (717)
365 PHA02244 ATPase-like protein 35.7 13 0.00028 39.5 0.2 20 45-66 118-137 (383)
366 PRK14531 adenylate kinase; Pro 35.6 15 0.00032 34.8 0.5 15 50-64 4-18 (183)
367 PTZ00454 26S protease regulato 35.6 15 0.00032 39.6 0.6 18 48-65 179-196 (398)
368 cd01393 recA_like RecA is a b 35.6 26 0.00057 34.0 2.4 31 36-66 4-37 (226)
369 cd00268 DEADc DEAD-box helicas 35.5 23 0.00051 33.6 1.9 24 418-443 29-52 (203)
370 PRK12422 chromosomal replicati 35.4 14 0.00031 40.4 0.5 53 391-446 104-160 (445)
371 TIGR03877 thermo_KaiC_1 KaiC d 35.4 25 0.00055 34.7 2.2 26 38-63 8-36 (237)
372 cd01850 CDC_Septin CDC/Septin. 35.4 20 0.00043 36.6 1.5 21 45-65 1-21 (276)
373 PRK06217 hypothetical protein; 35.4 15 0.00032 34.8 0.5 15 51-65 4-18 (183)
374 cd01394 radB RadB. The archaea 35.4 26 0.00057 33.9 2.3 30 37-66 5-37 (218)
375 TIGR03158 cas3_cyano CRISPR-as 35.2 25 0.00054 37.2 2.2 27 39-65 5-31 (357)
376 COG1136 SalX ABC-type antimicr 35.2 11 0.00024 37.2 -0.4 15 51-65 34-48 (226)
377 PRK06696 uridine kinase; Valid 35.0 24 0.00051 34.6 1.9 31 35-65 6-39 (223)
378 KOG2373|consensus 34.7 35 0.00077 35.7 3.1 29 258-286 147-175 (514)
379 PRK11331 5-methylcytosine-spec 34.7 21 0.00046 39.0 1.6 27 416-444 185-211 (459)
380 PRK06645 DNA polymerase III su 34.7 16 0.00035 40.6 0.8 23 43-65 37-60 (507)
381 KOG0354|consensus 34.6 25 0.00055 40.5 2.2 44 19-65 44-93 (746)
382 PF08477 Miro: Miro-like prote 34.2 19 0.00041 30.7 1.0 15 51-65 2-16 (119)
383 COG2256 MGS1 ATPase related to 34.1 18 0.00038 38.7 0.9 37 27-64 28-64 (436)
384 TIGR01241 FtsH_fam ATP-depende 34.1 15 0.00033 40.7 0.5 18 49-66 89-106 (495)
385 COG2256 MGS1 ATPase related to 34.0 20 0.00044 38.2 1.3 36 405-441 27-62 (436)
386 PRK08233 hypothetical protein; 34.0 16 0.00034 34.0 0.5 16 50-65 5-20 (182)
387 KOG0354|consensus 33.9 42 0.00092 38.7 3.9 43 398-443 44-92 (746)
388 TIGR03238 dnd_assoc_3 dnd syst 33.9 18 0.00038 39.8 0.9 28 40-67 18-51 (504)
389 COG1222 RPT1 ATP-dependent 26S 33.8 18 0.00038 38.1 0.8 46 396-441 149-199 (406)
390 TIGR02902 spore_lonB ATP-depen 33.8 22 0.00047 39.9 1.6 42 395-444 62-103 (531)
391 PRK13342 recombination factor 33.6 22 0.00047 38.5 1.5 28 418-445 27-54 (413)
392 CHL00195 ycf46 Ycf46; Provisio 33.5 14 0.00031 40.9 0.1 17 49-65 260-276 (489)
393 PTZ00361 26 proteosome regulat 33.5 14 0.0003 40.4 -0.0 16 50-65 219-234 (438)
394 PF12775 AAA_7: P-loop contain 33.5 26 0.00057 35.6 2.0 28 418-446 25-52 (272)
395 PF05496 RuvB_N: Holliday junc 33.4 19 0.00042 35.5 0.9 41 23-64 24-66 (233)
396 KOG0742|consensus 33.4 19 0.00041 38.5 1.0 13 50-62 386-398 (630)
397 PRK11889 flhF flagellar biosyn 33.2 13 0.00029 39.9 -0.2 18 49-66 242-259 (436)
398 PRK11057 ATP-dependent DNA hel 33.1 25 0.00054 40.1 2.0 27 37-65 31-57 (607)
399 PLN00206 DEAD-box ATP-dependen 33.0 30 0.00065 38.6 2.6 25 39-65 151-175 (518)
400 TIGR00064 ftsY signal recognit 33.0 13 0.00029 37.7 -0.2 18 49-66 73-90 (272)
401 KOG1803|consensus 32.9 17 0.00037 40.6 0.5 17 429-445 203-219 (649)
402 cd01127 TrwB Bacterial conjuga 32.9 13 0.00028 40.2 -0.4 18 48-65 42-59 (410)
403 PRK00440 rfc replication facto 32.9 20 0.00043 36.8 1.0 21 424-444 35-55 (319)
404 TIGR02237 recomb_radB DNA repa 32.8 24 0.00052 33.9 1.5 18 427-444 12-29 (209)
405 KOG0953|consensus 32.8 19 0.0004 39.9 0.8 46 50-100 193-238 (700)
406 cd01123 Rad51_DMC1_radA Rad51_ 32.7 27 0.00059 34.1 1.9 29 416-444 5-36 (235)
407 PRK01297 ATP-dependent RNA hel 32.7 24 0.00052 38.9 1.7 26 38-65 116-141 (475)
408 PRK12726 flagellar biosynthesi 32.6 14 0.0003 39.5 -0.2 18 49-66 207-224 (407)
409 COG3842 PotA ABC-type spermidi 32.6 13 0.00028 39.2 -0.4 13 53-65 36-48 (352)
410 PLN03025 replication factor C 32.5 23 0.00049 36.8 1.4 22 425-446 32-53 (319)
411 PRK05580 primosome assembly pr 32.4 25 0.00054 40.8 1.8 28 39-66 152-180 (679)
412 PRK11448 hsdR type I restricti 32.4 17 0.00037 44.5 0.5 31 415-446 422-452 (1123)
413 PRK11192 ATP-dependent RNA hel 32.4 26 0.00056 38.0 1.8 25 417-443 30-54 (434)
414 TIGR01360 aden_kin_iso1 adenyl 32.3 18 0.00038 33.9 0.5 16 50-65 5-20 (188)
415 PRK14532 adenylate kinase; Pro 32.3 18 0.00039 34.2 0.5 15 50-64 2-16 (188)
416 COG0467 RAD55 RecA-superfamily 32.1 29 0.00062 34.8 2.0 24 40-63 12-38 (260)
417 PRK14721 flhF flagellar biosyn 32.0 15 0.00032 39.8 -0.1 19 48-66 191-209 (420)
418 PRK14729 miaA tRNA delta(2)-is 32.0 22 0.00047 36.8 1.1 15 50-64 6-20 (300)
419 COG3829 RocR Transcriptional r 31.9 21 0.00047 39.5 1.1 43 393-441 240-282 (560)
420 KOG0340|consensus 31.9 35 0.00076 35.8 2.6 30 416-447 35-64 (442)
421 KOG0335|consensus 31.8 15 0.00032 40.2 -0.2 24 422-447 108-131 (482)
422 COG0630 VirB11 Type IV secreto 31.8 14 0.00029 38.5 -0.4 19 48-66 143-161 (312)
423 CHL00081 chlI Mg-protoporyphyr 31.8 17 0.00037 38.4 0.3 30 37-66 27-56 (350)
424 PRK04537 ATP-dependent RNA hel 31.7 28 0.00061 39.4 2.0 25 39-65 39-63 (572)
425 COG1125 OpuBA ABC-type proline 31.6 15 0.00032 37.0 -0.2 12 433-444 33-44 (309)
426 PRK04040 adenylate kinase; Pro 31.5 19 0.00042 34.4 0.6 16 50-65 4-19 (188)
427 PF00485 PRK: Phosphoribulokin 31.5 19 0.00042 34.3 0.6 15 51-65 2-16 (194)
428 TIGR03881 KaiC_arch_4 KaiC dom 31.4 28 0.00061 34.0 1.8 28 38-65 7-37 (229)
429 PF14532 Sigma54_activ_2: Sigm 31.2 21 0.00045 31.9 0.8 26 141-166 70-95 (138)
430 KOG0727|consensus 31.2 21 0.00046 35.7 0.8 52 49-101 190-248 (408)
431 TIGR03689 pup_AAA proteasome A 31.2 18 0.00039 40.2 0.4 16 50-65 218-233 (512)
432 PRK10416 signal recognition pa 31.1 15 0.00033 38.3 -0.2 19 48-66 114-132 (318)
433 COG1419 FlhF Flagellar GTP-bin 31.1 21 0.00045 38.3 0.8 18 427-444 203-220 (407)
434 TIGR00348 hsdR type I site-spe 31.0 24 0.00051 40.8 1.3 31 415-446 247-282 (667)
435 PRK06762 hypothetical protein; 30.9 20 0.00044 32.9 0.7 15 50-64 4-18 (166)
436 PRK04837 ATP-dependent RNA hel 30.9 28 0.0006 37.7 1.8 25 418-444 38-62 (423)
437 PRK14723 flhF flagellar biosyn 30.9 16 0.00036 42.4 0.0 19 49-67 186-204 (767)
438 PRK10590 ATP-dependent RNA hel 30.9 29 0.00063 38.0 2.0 25 417-443 30-54 (456)
439 TIGR02902 spore_lonB ATP-depen 30.9 27 0.00059 39.2 1.7 30 36-65 74-103 (531)
440 TIGR01618 phage_P_loop phage n 30.9 19 0.00041 35.4 0.4 21 427-447 12-32 (220)
441 PF00931 NB-ARC: NB-ARC domain 30.8 36 0.00078 34.2 2.5 30 36-65 5-36 (287)
442 PF06745 KaiC: KaiC; InterPro 30.8 26 0.00056 34.2 1.4 26 38-63 6-34 (226)
443 cd02020 CMPK Cytidine monophos 30.8 23 0.00049 31.5 0.9 15 51-65 2-16 (147)
444 cd01383 MYSc_type_VIII Myosin 30.7 28 0.00061 40.2 1.8 21 424-444 89-109 (677)
445 COG3839 MalK ABC-type sugar tr 30.6 15 0.00032 38.6 -0.4 15 51-65 32-46 (338)
446 TIGR01650 PD_CobS cobaltochela 30.6 40 0.00086 35.3 2.7 18 427-444 64-81 (327)
447 TIGR02236 recomb_radA DNA repa 30.5 33 0.00072 35.4 2.2 32 35-66 79-113 (310)
448 KOG0741|consensus 30.4 24 0.00053 39.0 1.2 14 50-63 258-271 (744)
449 KOG0729|consensus 30.4 24 0.00053 35.5 1.1 16 428-443 212-227 (435)
450 smart00242 MYSc Myosin. Large 30.3 25 0.00053 40.8 1.3 22 423-444 88-109 (677)
451 PRK01172 ski2-like helicase; P 30.3 29 0.00063 40.1 1.9 25 38-64 29-53 (674)
452 PF04548 AIG1: AIG1 family; I 30.3 18 0.00039 35.2 0.2 16 50-65 2-17 (212)
453 cd01379 MYSc_type_III Myosin m 30.3 26 0.00056 40.4 1.4 21 45-65 83-103 (653)
454 TIGR02640 gas_vesic_GvpN gas v 30.1 32 0.0007 34.6 2.0 24 418-443 14-37 (262)
455 PF05729 NACHT: NACHT domain 30.1 17 0.00036 33.0 -0.1 16 429-444 2-17 (166)
456 TIGR02173 cyt_kin_arch cytidyl 30.0 20 0.00044 32.9 0.5 16 50-65 2-17 (171)
457 TIGR03263 guanyl_kin guanylate 30.0 26 0.00055 32.7 1.2 17 49-65 2-18 (180)
458 PF10236 DAP3: Mitochondrial r 29.9 22 0.00047 36.9 0.7 24 423-446 19-42 (309)
459 PF06745 KaiC: KaiC; InterPro 29.9 33 0.00071 33.5 2.0 25 417-441 6-33 (226)
460 PLN00020 ribulose bisphosphate 29.8 17 0.00037 38.6 -0.1 33 33-65 129-165 (413)
461 PRK05580 primosome assembly pr 29.7 20 0.00043 41.5 0.4 38 401-445 143-180 (679)
462 PRK03839 putative kinase; Prov 29.7 21 0.00044 33.5 0.5 14 51-64 3-16 (180)
463 PRK00771 signal recognition pa 29.7 19 0.00042 39.2 0.3 19 48-66 95-113 (437)
464 cd02021 GntK Gluconate kinase 29.7 21 0.00045 32.2 0.5 14 430-443 2-15 (150)
465 PHA02244 ATPase-like protein 29.6 26 0.00057 37.3 1.2 20 423-444 117-136 (383)
466 cd01381 MYSc_type_VII Myosin m 29.6 30 0.00066 39.9 1.9 21 424-444 83-103 (671)
467 cd02027 APSK Adenosine 5'-phos 29.6 20 0.00044 32.7 0.4 15 51-65 2-16 (149)
468 PF02534 T4SS-DNA_transf: Type 29.5 36 0.00079 37.3 2.4 18 49-66 45-62 (469)
469 PRK05342 clpX ATP-dependent pr 29.5 22 0.00048 38.5 0.7 17 49-65 109-125 (412)
470 cd01384 MYSc_type_XI Myosin mo 29.5 27 0.00059 40.3 1.5 21 424-444 85-105 (674)
471 cd02019 NK Nucleoside/nucleoti 29.5 26 0.00056 27.3 0.9 15 51-65 2-16 (69)
472 TIGR03744 traC_PFL_4706 conjug 29.5 16 0.00035 43.7 -0.3 20 47-66 474-493 (893)
473 PRK14974 cell division protein 29.5 19 0.00042 37.8 0.2 19 48-66 140-158 (336)
474 cd01126 TraG_VirD4 The TraG/Tr 29.4 30 0.00065 36.9 1.7 16 430-445 2-17 (384)
475 TIGR02746 TraC-F-type type-IV 29.3 17 0.00036 43.0 -0.3 18 48-65 430-447 (797)
476 cd02023 UMPK Uridine monophosp 29.2 16 0.00035 34.9 -0.4 15 51-65 2-16 (198)
477 PRK10917 ATP-dependent DNA hel 29.1 31 0.00068 40.0 1.9 22 45-66 279-300 (681)
478 TIGR02903 spore_lon_C ATP-depe 29.1 30 0.00065 39.6 1.7 43 394-444 150-192 (615)
479 cd00071 GMPK Guanosine monopho 29.1 25 0.00055 31.6 0.9 15 51-65 2-16 (137)
480 KOG0652|consensus 29.0 24 0.00053 35.4 0.8 13 429-441 207-219 (424)
481 cd01386 MYSc_type_XVIII Myosin 28.9 29 0.00063 40.7 1.6 21 45-65 83-103 (767)
482 PHA02653 RNA helicase NPH-II; 28.9 34 0.00074 39.5 2.1 25 417-443 171-195 (675)
483 TIGR00602 rad24 checkpoint pro 28.9 20 0.00044 40.9 0.3 17 50-66 112-128 (637)
484 PRK14530 adenylate kinase; Pro 28.9 22 0.00047 34.6 0.5 16 50-65 5-20 (215)
485 PF10412 TrwB_AAD_bind: Type I 28.8 17 0.00036 39.0 -0.4 17 49-65 16-32 (386)
486 KOG0735|consensus 28.7 22 0.00048 40.6 0.6 20 47-66 700-719 (952)
487 KOG0745|consensus 28.7 24 0.00052 38.1 0.8 16 49-64 227-242 (564)
488 KOG0926|consensus 28.7 29 0.00063 40.2 1.5 19 426-444 270-288 (1172)
489 PRK12724 flagellar biosynthesi 28.6 18 0.00039 39.2 -0.2 18 49-66 224-241 (432)
490 cd01385 MYSc_type_IX Myosin mo 28.6 28 0.00062 40.3 1.4 21 424-444 91-111 (692)
491 cd02025 PanK Pantothenate kina 28.3 13 0.00028 36.5 -1.2 13 53-65 4-16 (220)
492 TIGR01351 adk adenylate kinase 28.3 23 0.00049 34.3 0.5 14 51-64 2-15 (210)
493 PRK00131 aroK shikimate kinase 28.3 24 0.00052 32.4 0.7 16 428-443 5-20 (175)
494 PF12774 AAA_6: Hydrolytic ATP 28.3 23 0.00049 35.1 0.5 31 414-444 13-49 (231)
495 PRK00080 ruvB Holliday junctio 28.2 22 0.00047 37.1 0.3 18 428-445 52-69 (328)
496 COG0563 Adk Adenylate kinase a 28.2 23 0.00051 33.5 0.6 14 51-64 3-16 (178)
497 TIGR01359 UMP_CMP_kin_fam UMP- 28.2 23 0.00049 33.1 0.5 14 430-443 2-15 (183)
498 PF01745 IPT: Isopentenyl tran 28.2 29 0.00063 34.0 1.2 15 51-65 4-18 (233)
499 PRK04195 replication factor C 28.1 25 0.00055 38.8 0.9 29 416-444 27-56 (482)
500 cd01124 KaiC KaiC is a circadi 28.1 26 0.00056 32.7 0.9 14 430-443 2-15 (187)
No 1
>KOG0243|consensus
Probab=100.00 E-value=8.1e-89 Score=753.69 Aligned_cols=340 Identities=61% Similarity=0.864 Sum_probs=323.8
Q ss_pred eeeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhh
Q psy9448 12 MMVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 91 (583)
Q Consensus 12 ~~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~ 91 (583)
..-.|.||+||+|.+.|++||+.++.|+|+.|+.|||||||||||||+||||||+|..... .|..++..|||||++.
T Consensus 93 ~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~---~g~l~~~aGIIPRal~ 169 (1041)
T KOG0243|consen 93 IDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKK---NGELPSEAGIIPRALR 169 (1041)
T ss_pred ccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccc---cCCCCccCCcchHHHH
Confidence 3455779999999999999999999999999999999999999999999999999976532 3566778899999999
Q ss_pred HHHHHHhhccceeEEEEEeehhhchHHhhhhcCCCCcc-ceEEeeecc---ccccceEEeccceeeecchhHHHHHHHhc
Q psy9448 92 HLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDI-TKLRLFEDS---ARKGSVIIQGLEEKAVHNKDEVYKILEKG 167 (583)
Q Consensus 92 ~lf~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~-~~l~i~~~~---~~~~~~~v~~l~~~~v~s~~e~~~ll~~g 167 (583)
+||+.+...+ .+|.|+|||+|+|||+++|||++.+.. ..+++.+++ +.+||++|+|+.++.|.++.|++++|++|
T Consensus 170 ~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekG 248 (1041)
T KOG0243|consen 170 QIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKG 248 (1041)
T ss_pred HHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhh
Confidence 9999999866 899999999999999999999998765 678888888 78999999999999999999999999999
Q ss_pred chhhhhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhh
Q psy9448 168 SQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGR 247 (583)
Q Consensus 168 ~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~ 247 (583)
...|++++|.||..|||||+||+|+|+.++....++++++.|||+||||||||.++++|+.+.|.+|+..||+||++||+
T Consensus 249 s~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGR 328 (1041)
T KOG0243|consen 249 SKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGR 328 (1041)
T ss_pred hhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhhhhHHHHHHH
Q psy9448 248 CITALVEKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRV 327 (583)
Q Consensus 248 vi~aL~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~~~~~~~~~~ 327 (583)
||.||.++..|||||+|||||||||+|||.++|+|||||||+..+++||++||.||.|||+|+|+|.+|+.+.++.++++
T Consensus 329 VInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd 408 (1041)
T KOG0243|consen 329 VINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKD 408 (1041)
T ss_pred HHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHhhhccCCCCccccc
Q psy9448 328 TSINMEETLSTLDYAHRAKNITNRPEINQ 356 (583)
Q Consensus 328 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~q 356 (583)
|-.||++ ||+++++.|++||.+.++-.+
T Consensus 409 ~~~EIer-LK~dl~AaReKnGvyisee~y 436 (1041)
T KOG0243|consen 409 LYEEIER-LKRDLAAAREKNGVYISEERY 436 (1041)
T ss_pred HHHHHHH-HHHHHHHhHhhCceEechHHH
Confidence 9999999 999999999999998886544
No 2
>KOG4280|consensus
Probab=100.00 E-value=5.1e-85 Score=696.71 Aligned_cols=318 Identities=49% Similarity=0.677 Sum_probs=296.7
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||.|++ ....|||||++.+|
T Consensus 52 ~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~----------~~~~GiiPraf~~L 121 (574)
T KOG4280|consen 52 KSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPD----------PELRGLIPRAFEHL 121 (574)
T ss_pred CCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCC----------hhhCCchhHHHHHH
Confidence 44889999999999999999999999999999999999999999999999999982 23579999999999
Q ss_pred HHHHhhcc-ceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhh
Q psy9448 94 FDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172 (583)
Q Consensus 94 f~~~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 172 (583)
|.+|+... ...|.|+|||+|||||.|+|||+|.+. +.+.+++++ +.|+||+|++++.|.++++++.+|..|.++|+
T Consensus 122 F~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~-~~l~lre~p--~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~ 198 (574)
T KOG4280|consen 122 FRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP-KGLELREDP--KCGVYVENLSEMDVESAEDAQQLLVVGLANRR 198 (574)
T ss_pred HHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc-CCceeeEcC--CCceEecCcceeecCCHHHHHHHHHHHHhhcc
Confidence 99999875 346999999999999999999998764 578899988 67999999999999999999999999999999
Q ss_pred hHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHH
Q psy9448 173 TAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 252 (583)
Q Consensus 173 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL 252 (583)
+++|.||..|||||+||+|+|++.....++....+.|||+|||||||||..++++.|.|++|+.+||+||++||+||.+|
T Consensus 199 vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aL 278 (574)
T KOG4280|consen 199 VGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISAL 278 (574)
T ss_pred hhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHH
Confidence 99999999999999999999998554455666778999999999999999999999999999999999999999999999
Q ss_pred hhhCC-CCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhhhhHHHHHHHHHHH
Q psy9448 253 VEKTP-HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRVTSIN 331 (583)
Q Consensus 253 ~~~~~-~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~~~~~~~~~~~~~e 331 (583)
+++.. ||||||||||+||||+|||||+|+|||||+|+..+++||++||+||+|||.|+|+|.+|+++. +++++.++.+
T Consensus 279 vd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~e 357 (574)
T KOG4280|consen 279 VDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEE 357 (574)
T ss_pred hccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHH
Confidence 99876 999999999999999999999999999999999999999999999999999999999999975 5899999999
Q ss_pred HHHhhhhhhhHhhhc
Q psy9448 332 MEETLSTLDYAHRAK 346 (583)
Q Consensus 332 ~~~~l~~~~~~~~~~ 346 (583)
|++ ||.++...+..
T Consensus 358 i~~-Lk~~l~~~~~~ 371 (574)
T KOG4280|consen 358 IER-LKKELDPGGSP 371 (574)
T ss_pred HHH-HHHhhccccCc
Confidence 999 99988765543
No 3
>KOG0245|consensus
Probab=100.00 E-value=3.5e-80 Score=671.77 Aligned_cols=318 Identities=39% Similarity=0.579 Sum_probs=289.1
Q ss_pred eeeeeehhhccc-------CCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCcc
Q psy9448 13 MVVSVMFLVCIF-------YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85 (583)
Q Consensus 13 ~~~~~~D~Vf~~-------~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Gi 85 (583)
..+|.||+.|.. -++|..||+.++.|+++.+|+|||+||||||||||||||||+|-.. ....||
T Consensus 46 ~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~---------~~e~GI 116 (1221)
T KOG0245|consen 46 APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQE---------PDEPGI 116 (1221)
T ss_pred CCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCC---------CCCCCc
Confidence 345677776642 3689999999999999999999999999999999999999999863 224699
Q ss_pred chhhhhHHHHHHhhc--cceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHH
Q psy9448 86 VPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKI 163 (583)
Q Consensus 86 ipr~~~~lf~~~~~~--~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~l 163 (583)
|||++++||.++... .+..|.|.|||+|||||+|+|||+..+....|+++|+| .-|+||.+|+.+.|+|+.|+..+
T Consensus 117 IPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP--~lGPYVedLS~~aV~Sy~dI~~~ 194 (1221)
T KOG0245|consen 117 IPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHP--ILGPYVEDLSKLAVTSYADIQDL 194 (1221)
T ss_pred hhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccC--ccChhHhHhhhcccccHHHHHHH
Confidence 999999999999865 45689999999999999999999955556799999999 56899999999999999999999
Q ss_pred HHhcchhhhhHHHHhhhcccCceeEEEEEEEeecCCCCh-hhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhh
Q psy9448 164 LEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDG-EELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSL 242 (583)
Q Consensus 164 l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~-~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL 242 (583)
++.|++.|++++|+||+.|||||+||+|.+.++.-..+. -...+.|||+|||||||||...+|+.|.|++|+.+|||||
T Consensus 195 md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSL 274 (1221)
T KOG0245|consen 195 MDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSL 274 (1221)
T ss_pred HHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHH
Confidence 999999999999999999999999999999887644332 3456789999999999999999999999999999999999
Q ss_pred hhhhhHHHHHhhhC-------CCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhh
Q psy9448 243 LTLGRCITALVEKT-------PHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEI 315 (583)
Q Consensus 243 ~~L~~vi~aL~~~~-------~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~ 315 (583)
.+||+||+||++.+ .+||||||.||+||++.||||+||+|||++||++.||+|||+|||||.|||+|+|+++|
T Consensus 275 tTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avV 354 (1221)
T KOG0245|consen 275 TTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVV 354 (1221)
T ss_pred HHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhcccee
Confidence 99999999999743 48999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhHh
Q psy9448 316 NQKMSKKALLRVTSINMEETLSTLDYAH 343 (583)
Q Consensus 316 n~~~~~~~~~~~~~~e~~~~l~~~~~~~ 343 (583)
|++++. .+||+|++|+.+ ||..+...
T Consensus 355 NEdpna-KLIRELreEv~r-Lksll~~~ 380 (1221)
T KOG0245|consen 355 NEDPNA-KLIRELREEVAR-LKSLLRAQ 380 (1221)
T ss_pred CCCccH-HHHHHHHHHHHH-HHHHHhcc
Confidence 999876 799999999999 98877543
No 4
>KOG0240|consensus
Probab=100.00 E-value=6.4e-77 Score=617.24 Aligned_cols=306 Identities=44% Similarity=0.684 Sum_probs=285.5
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..+.||+||.|+++|++||+.++.|+|++||.|||+||||||||||||||||.|...+ ....||+||++++|
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d--------~~~~GIipRi~~di 120 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHD--------PEEMGIIPRILNDI 120 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCC--------hhhcCcHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999997652 23459999999999
Q ss_pred HHHHhhcc-ceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhh
Q psy9448 94 FDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172 (583)
Q Consensus 94 f~~~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 172 (583)
|++|.... +.+|.|+|||+|||+|+++|||+|.. .++.+++|. +..++|+|+++..|.+++++++.++.|..+|+
T Consensus 121 F~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k--~nlsvheDK--~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~ 196 (607)
T KOG0240|consen 121 FDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEK--TNLSVHEDK--NRVPYVKGVTERFVSSPDEVLDVIDEGKSNRH 196 (607)
T ss_pred HHHHhcCcccceEEEEEEeehhhhhHHHHHhCccc--CCceeeccc--CCCceecCceeEEecCHHHHHHHHhcccccch
Confidence 99999865 46899999999999999999999755 578999884 78899999999999999999999999999999
Q ss_pred hHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHH
Q psy9448 173 TAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 252 (583)
Q Consensus 173 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL 252 (583)
++.|.||.+|||||+||+|+|.+.... ....+.|+|.||||||||+.+|+|+.|.-+.|+++||+||+|||+||+||
T Consensus 197 va~t~mn~~sSRSHsIF~i~VkQ~n~e---~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aL 273 (607)
T KOG0240|consen 197 VAVTNMNEHSSRSHSIFLIHVKQENVE---DKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINAL 273 (607)
T ss_pred hhhccccccccccceEEEEEEEecccc---chhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999987643 23357899999999999999999999999999999999999999999999
Q ss_pred hhh-CCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhhhhHHHHHHHHHHH
Q psy9448 253 VEK-TPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRVTSIN 331 (583)
Q Consensus 253 ~~~-~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~~~~~~~~~~~~~e 331 (583)
+++ ..|||||||||||||||+|||||+|.+|.|++|+.-+..||.+||+|++|||.|+|.+.+|...+.+++.+.|+.+
T Consensus 274 a~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~ 353 (607)
T KOG0240|consen 274 AEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKK 353 (607)
T ss_pred hcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHHHHHHHHHH
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999988888888776
Q ss_pred HHH
Q psy9448 332 MEE 334 (583)
Q Consensus 332 ~~~ 334 (583)
.+.
T Consensus 354 kd~ 356 (607)
T KOG0240|consen 354 KDK 356 (607)
T ss_pred HhH
Confidence 654
No 5
>KOG0242|consensus
Probab=100.00 E-value=9.3e-77 Score=658.01 Aligned_cols=314 Identities=46% Similarity=0.713 Sum_probs=294.2
Q ss_pred eeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhH
Q psy9448 13 MVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92 (583)
Q Consensus 13 ~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 92 (583)
..+|.||+||+++++|++||+..++|+|+++++|+|+||||||||||||||||.|....| ||||+++.+
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~P-----------Gii~la~~d 120 (675)
T KOG0242|consen 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDP-----------GIIPLAMKD 120 (675)
T ss_pred ccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCC-----------CeeehHHHH
Confidence 467889999999999999999999999999999999999999999999999999998754 999999999
Q ss_pred HHHHHhhccceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhh
Q psy9448 93 LFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172 (583)
Q Consensus 93 lf~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 172 (583)
||+.|....+..|.|.|||+|||||.|+|||+|.. ..+++++|+ .++++|.||++..|.|+++++.+|..|.++|+
T Consensus 121 if~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~--~~L~irED~--~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~ 196 (675)
T KOG0242|consen 121 IFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDG--GDLRLREDS--EGGIVVPGLTEETVSSREELLELLQKGNKNRT 196 (675)
T ss_pred HHHHHHhcCCceeEEEEEEEEEeccccccccCCCC--CCceEeEcC--CCCEEecCCeeecCCCHHHHHHHHHHhhccCc
Confidence 99999998899999999999999999999999866 359999998 56899999999999999999999999999999
Q ss_pred hHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHH
Q psy9448 173 TAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 252 (583)
Q Consensus 173 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL 252 (583)
++.|.+|..|||||+||+|.|.+...... . ..++|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|
T Consensus 197 ~g~T~~N~~SSRSHaIl~i~i~s~~~~~~--~--~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~L 272 (675)
T KOG0242|consen 197 TGETNLNEQSSRSHAILRITVESRGREAS--S--RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKL 272 (675)
T ss_pred ccccccccccchhhheeeEEEEecccccc--c--hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999998775443 1 6789999999999999999999999999999999999999999999
Q ss_pred hhh--CCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhhhhHHHHHHHHHH
Q psy9448 253 VEK--TPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRVTSI 330 (583)
Q Consensus 253 ~~~--~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~~~~~~~~~~~~~ 330 (583)
+++ ..||||||||||||||++||||++|.|||||+|+..+++||.+||+||+|||+|++++.+|+.+....+++.+++
T Consensus 273 s~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~ 352 (675)
T KOG0242|consen 273 SEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQR 352 (675)
T ss_pred ccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHH
Confidence 986 568999999999999999999999999999999999999999999999999999999999999999899988888
Q ss_pred HHHHhhhhhhhHhhhc
Q psy9448 331 NMEETLSTLDYAHRAK 346 (583)
Q Consensus 331 e~~~~l~~~~~~~~~~ 346 (583)
++.+ |+.++...+.+
T Consensus 353 ~i~~-l~~e~~~~~~~ 367 (675)
T KOG0242|consen 353 EIAE-LEAELERLKKK 367 (675)
T ss_pred HHHH-HHHHHHhhccc
Confidence 8888 88877654433
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.7e-76 Score=657.64 Aligned_cols=321 Identities=40% Similarity=0.616 Sum_probs=281.5
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|+...... ........|||||++++|
T Consensus 132 qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~d-e~~s~~e~GIIPRaledL 210 (1320)
T PLN03188 132 QTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLE-EHLSGDQQGLTPRVFERL 210 (1320)
T ss_pred cEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccc-cccccccCCchHHHHHHH
Confidence 3577999999999999999999999999999999999999999999999999997532100 001223579999999999
Q ss_pred HHHHhhc------cceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhc
Q psy9448 94 FDELRLL------GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKG 167 (583)
Q Consensus 94 f~~~~~~------~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g 167 (583)
|..+... .+..|.|+|||+|||||+|+|||++.. ..+++++++ +++++|.|++++.|.|++|++++|..|
T Consensus 211 F~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~--k~L~IRED~--kgGv~VeGLTEv~V~S~ED~l~LL~~G 286 (1320)
T PLN03188 211 FARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ--KNLQIREDV--KSGVYVENLTEEYVKTMKDVTQLLIKG 286 (1320)
T ss_pred HHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc--CCceEEEcC--CCCeEeCCCeEEeCCCHHHHHHHHHHH
Confidence 9998642 345799999999999999999998764 458888887 678999999999999999999999999
Q ss_pred chhhhhHHHHhhhcccCceeEEEEEEEeecCC-CChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhh
Q psy9448 168 SQKRQTAATLMNAHSSRSHTIFTITIHIKDNS-LDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLG 246 (583)
Q Consensus 168 ~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~-~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~ 246 (583)
..+|++++|.+|..|||||+||+|+|++.... .++....+.|+|+|||||||||..++++.|.+++|+.+||+||++||
T Consensus 287 ~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLG 366 (1320)
T PLN03188 287 LSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLG 366 (1320)
T ss_pred hccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999865432 23333456799999999999999999999999999999999999999
Q ss_pred hHHHHHhh-----hCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhhhhH
Q psy9448 247 RCITALVE-----KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSK 321 (583)
Q Consensus 247 ~vi~aL~~-----~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~~~~ 321 (583)
+||.+|++ +..|||||+||||+||||+|||||+|+|||||||+..+++||++||+||+|||+|+|+|.+|+.+..
T Consensus 367 nVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~ 446 (1320)
T PLN03188 367 NLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446 (1320)
T ss_pred HHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhh
Confidence 99999986 3579999999999999999999999999999999999999999999999999999999999987543
Q ss_pred -----HHHHHHHHHHHHHhhhhhh
Q psy9448 322 -----KALLRVTSINMEETLSTLD 340 (583)
Q Consensus 322 -----~~~~~~~~~e~~~~l~~~~ 340 (583)
+.+|+.++.|+.+ |+...
T Consensus 447 ~vn~LrelIr~Lk~EL~r-LK~~~ 469 (1320)
T PLN03188 447 DVNFLREVIRQLRDELQR-VKANG 469 (1320)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHhc
Confidence 3467777777777 66543
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=2.9e-73 Score=593.42 Aligned_cols=288 Identities=48% Similarity=0.702 Sum_probs=259.6
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..+.||+||+++++|++||+.+++|+|+++++|||+||||||||||||||||+|+...+.. ......|||||++++|
T Consensus 41 ~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~---~~~~~~Giipr~~~~L 117 (337)
T cd01373 41 RMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDE---SPHGLQGVIPRIFEYL 117 (337)
T ss_pred cEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCcccc---ccccCCCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999998653211 1223579999999999
Q ss_pred HHHHhhc-----cceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcc
Q psy9448 94 FDELRLL-----GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGS 168 (583)
Q Consensus 94 f~~~~~~-----~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~ 168 (583)
|+.+... .+..|.|++||+|||||+|+|||++.. ..+++++++ .++++++|++++.|.|++|++++|..|.
T Consensus 118 f~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~--~~l~i~e~~--~~~~~v~gl~~~~v~s~~e~~~ll~~g~ 193 (337)
T cd01373 118 FSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS--RNLKIREDI--KKGVYVENLTEEYVSSYEDVYQVLLKGL 193 (337)
T ss_pred HHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC--CCceEEECC--CCCEEeCCCEEEEeCCHHHHHHHHHHHH
Confidence 9988654 346799999999999999999998754 468888876 5789999999999999999999999999
Q ss_pred hhhhhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhH
Q psy9448 169 QKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRC 248 (583)
Q Consensus 169 ~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~v 248 (583)
.+|+.++|.+|..|||||+||+|+|........ ......|+|+|||||||||..++++.+.+++|+..||+||++|++|
T Consensus 194 ~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~-~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~v 272 (337)
T cd01373 194 SNRKVAATSMNSESSRSHAVFTCTIESWEKKAS-STNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHV 272 (337)
T ss_pred hccCcccCcCCCCCCCccEEEEEEEEEeecCCC-CCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHH
Confidence 999999999999999999999999987653322 2234569999999999999999999999999999999999999999
Q ss_pred HHHHhh----hCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccC
Q psy9448 249 ITALVE----KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309 (583)
Q Consensus 249 i~aL~~----~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i 309 (583)
|.+|++ +..|||||+||||+||||+||||++|+||+||||+..+++||++||+||+|||+|
T Consensus 273 i~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 273 IMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999985 4689999999999999999999999999999999999999999999999999987
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.3e-73 Score=594.34 Aligned_cols=281 Identities=47% Similarity=0.723 Sum_probs=263.0
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..|.||+||+++++|++||+.+++|+|+++++|+|+||||||||||||||||+|++.. .|||||++++|
T Consensus 54 ~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~-----------~Giipr~~~~L 122 (338)
T cd01370 54 LKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSD-----------PGLMVLTMKDL 122 (338)
T ss_pred eEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCC-----------CchHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999998643 49999999999
Q ss_pred HHHHhhcc-ceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhh
Q psy9448 94 FDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172 (583)
Q Consensus 94 f~~~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 172 (583)
|+.++... +..|.|++||+|||||+|+|||++. ..++++++++ .+++++.|++++.|.|++|++++|+.|.++|+
T Consensus 123 F~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~--~~~l~i~ed~--~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~ 198 (338)
T cd01370 123 FDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS--SGPLELREDP--NQGIVVAGLTEHQPKSAEEILELLMKGNRNRT 198 (338)
T ss_pred HHhhhhcccCceEEEEEEEEEEECCEEEECCCCC--CCCceEEEcC--CCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcc
Confidence 99998765 6789999999999999999999875 3568898887 57899999999999999999999999999999
Q ss_pred hHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHH
Q psy9448 173 TAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 252 (583)
Q Consensus 173 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL 252 (583)
+++|.+|..|||||+||+|+|.+.....+.......|+|+|||||||||..+++..+.+++|+..||+||.+|++||.+|
T Consensus 199 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L 278 (338)
T cd01370 199 QEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINAL 278 (338)
T ss_pred cccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999998765433334456899999999999999999999999999999999999999999999
Q ss_pred hhhC---CCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccC
Q psy9448 253 VEKT---PHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309 (583)
Q Consensus 253 ~~~~---~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i 309 (583)
+++. .|||||+||||+||||+||||++|+||+||||+..+++||++||+||+|||+|
T Consensus 279 ~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 279 VDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9987 89999999999999999999999999999999999999999999999999986
No 9
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.8e-72 Score=592.23 Aligned_cols=305 Identities=66% Similarity=1.004 Sum_probs=279.2
Q ss_pred eeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhH
Q psy9448 13 MVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92 (583)
Q Consensus 13 ~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 92 (583)
...|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|.........+......|||||++++
T Consensus 47 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~ 126 (352)
T cd01364 47 TKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQ 126 (352)
T ss_pred ceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999998654322222334567999999999
Q ss_pred HHHHHhhccceeEEEEEeehhhchHHhhhhcCCCC-ccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhh
Q psy9448 93 LFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD-DITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKR 171 (583)
Q Consensus 93 lf~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~-~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 171 (583)
||+.+... +..|.|++||+|||+|+|+|||++.. ...++++.+++...++++|+|++++.|.|++|++++|..|.++|
T Consensus 127 Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R 205 (352)
T cd01364 127 LFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKR 205 (352)
T ss_pred HHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhc
Confidence 99999875 67899999999999999999999864 34578999986557889999999999999999999999999999
Q ss_pred hhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHH
Q psy9448 172 QTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITA 251 (583)
Q Consensus 172 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~a 251 (583)
+.++|.+|..|||||+||+|+|.+......+......|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+
T Consensus 206 ~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~a 285 (352)
T cd01364 206 KTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINA 285 (352)
T ss_pred ccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999877554455556679999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhh
Q psy9448 252 LVEKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318 (583)
Q Consensus 252 L~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~ 318 (583)
|+.+..|||||+||||+||+|+||||++|+||+||||...+++||++||+||+|+|+|+|+|.+|++
T Consensus 286 l~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 286 LVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred HHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=8.9e-72 Score=583.58 Aligned_cols=279 Identities=37% Similarity=0.622 Sum_probs=256.9
Q ss_pred ceeeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhh
Q psy9448 11 TMMVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 90 (583)
Q Consensus 11 ~~~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~ 90 (583)
.....+.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|++.. +|||||++
T Consensus 52 ~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~-----------~Gli~r~~ 120 (345)
T cd01368 52 QKETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGD-----------GGILPRSL 120 (345)
T ss_pred CCceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCC-----------CchHHHHH
Confidence 3445688999999999999999999999999999999999999999999999999998643 49999999
Q ss_pred hHHHHHHhhccceeEEEEEeehhhchHHhhhhcCCCCc----cceEEeeeccccccceEEeccceeeecchhHHHHHHHh
Q psy9448 91 NHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDD----ITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEK 166 (583)
Q Consensus 91 ~~lf~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~----~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~ 166 (583)
++||+.+.. |.|++||+|||||+|+|||++... ..++++++++ +++++|+|++++.|.|++|++++|..
T Consensus 121 ~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~--~~~~~i~gl~~~~v~s~~e~~~~l~~ 193 (345)
T cd01368 121 DVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDH--NGNMYVAGLTEVEVSSTEEAREVFKR 193 (345)
T ss_pred HHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECC--CCCEEecCCEEEEeCCHHHHHHHHHH
Confidence 999999875 899999999999999999987653 2468898887 57899999999999999999999999
Q ss_pred cchhhhhHHHHhhhcccCceeEEEEEEEeecCCCCh-----hhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchh
Q psy9448 167 GSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDG-----EELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQS 241 (583)
Q Consensus 167 g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~-----~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~S 241 (583)
|.++|.+++|.+|..|||||+||+|+|.+......+ ......|+|+|||||||||..++++.+.+++|+..||+|
T Consensus 194 g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~S 273 (345)
T cd01368 194 GQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTS 273 (345)
T ss_pred hhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHH
Confidence 999999999999999999999999999876543221 234567999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHhh------hCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhc
Q psy9448 242 LLTLGRCITALVE------KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307 (583)
Q Consensus 242 L~~L~~vi~aL~~------~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k 307 (583)
|++|++||.+|++ +..|||||+||||+||||+||||++|+||+||||...+++||++||+||.+|+
T Consensus 274 L~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 274 LMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999987 46899999999999999999999999999999999999999999999999985
No 11
>KOG0241|consensus
Probab=100.00 E-value=1.2e-70 Score=587.05 Aligned_cols=314 Identities=38% Similarity=0.575 Sum_probs=288.7
Q ss_pred eeeeehhhcccC-------CceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccc
Q psy9448 14 VVSVMFLVCIFY-------TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86 (583)
Q Consensus 14 ~~~~~D~Vf~~~-------~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Gii 86 (583)
..|.||+.|.+- +.|++||+.++..+|+++|+|||+||||||||||||||||+|..+.+ |||
T Consensus 53 ktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~Qp-----------GiI 121 (1714)
T KOG0241|consen 53 KTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQP-----------GII 121 (1714)
T ss_pred ceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCCC-----------Cch
Confidence 346799999753 57999999999999999999999999999999999999999998754 999
Q ss_pred hhhhhHHHHHHhhc--cceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHH
Q psy9448 87 PRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKIL 164 (583)
Q Consensus 87 pr~~~~lf~~~~~~--~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll 164 (583)
||++..||+.|... ++..|+|.|||+|||||++||||+|......++++++.. -|.||.||++..|.|++|+..++
T Consensus 122 Prlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsv--lGp~vdGLS~laV~S~qdId~lm 199 (1714)
T KOG0241|consen 122 PRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSV--LGPYVDGLSQLAVTSFQDIDSLM 199 (1714)
T ss_pred hHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeeccc--ccccccchhhhhcccHHHHHHHH
Confidence 99999999999864 467899999999999999999999999889999999874 57999999999999999999999
Q ss_pred HhcchhhhhHHHHhhhcccCceeEEEEEEEeecC-CCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhh
Q psy9448 165 EKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDN-SLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLL 243 (583)
Q Consensus 165 ~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~-~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~ 243 (583)
..|+++|++++|+||..|||||++|.|.|.+.-- ...+....+.|||.+|||||+||..++++.+.|++|+.+||+||.
T Consensus 200 ~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLt 279 (1714)
T KOG0241|consen 200 SEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLT 279 (1714)
T ss_pred HhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhH
Confidence 9999999999999999999999999999987542 223344457899999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhh------CCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhh
Q psy9448 244 TLGRCITALVEK------TPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQ 317 (583)
Q Consensus 244 ~L~~vi~aL~~~------~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~ 317 (583)
+||.||.||+++ .++||||||.||+||||+|||||+|+||+||||+..+|+||++|||||.|||+|+|++.+|+
T Consensus 280 tLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNe 359 (1714)
T KOG0241|consen 280 TLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 359 (1714)
T ss_pred HHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccC
Confidence 999999999974 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhH
Q psy9448 318 KMSKKALLRVTSINMEETLSTLDYA 342 (583)
Q Consensus 318 ~~~~~~~~~~~~~e~~~~l~~~~~~ 342 (583)
+++. ..+++++.|++. |+..|.+
T Consensus 360 dpna-rvirElReEve~-lr~qL~~ 382 (1714)
T KOG0241|consen 360 DPNA-RVIRELREEVEK-LREQLEQ 382 (1714)
T ss_pred CchH-HHHHHHHHHHHH-HHHHHhh
Confidence 9876 789999999998 7776654
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=8.1e-71 Score=579.86 Aligned_cols=291 Identities=42% Similarity=0.635 Sum_probs=267.1
Q ss_pred eeeeeehhhcccC-------CceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCcc
Q psy9448 13 MVVSVMFLVCIFY-------TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85 (583)
Q Consensus 13 ~~~~~~D~Vf~~~-------~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Gi 85 (583)
...+.||+||++. ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+... .||
T Consensus 47 ~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~-----------~Gl 115 (356)
T cd01365 47 PKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEE-----------KGI 115 (356)
T ss_pred ceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCC-----------Cch
Confidence 4567899999998 9999999999999999999999999999999999999999998653 499
Q ss_pred chhhhhHHHHHHhhccc--eeEEEEEeehhhchHHhhhhcCCCC-ccceEEeeeccccccceEEeccceeeecchhHHHH
Q psy9448 86 VPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTD-DITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYK 162 (583)
Q Consensus 86 ipr~~~~lf~~~~~~~~--~~~~v~vS~~EIyne~v~DLL~~~~-~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ 162 (583)
|||++++||+.++...+ ..|.|++||+|||||+|+|||++.. ....+++++++ .++++++|++++.|.|++|+++
T Consensus 116 i~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~--~~g~~v~gl~~~~v~s~~e~~~ 193 (356)
T cd01365 116 IPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHP--VLGPYVEDLSKVAVTSYEDIQN 193 (356)
T ss_pred HHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECC--CCCEEeCCCEEEEeCCHHHHHH
Confidence 99999999999987643 6899999999999999999999875 34578888876 5789999999999999999999
Q ss_pred HHHhcchhhhhHHHHhhhcccCceeEEEEEEEeecCCC-ChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchh
Q psy9448 163 ILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSL-DGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQS 241 (583)
Q Consensus 163 ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~-~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~S 241 (583)
+|..|.++|..++|.+|..|||||+||+|+|.+..... ........|+|+|||||||||..+.+..+.+++|+..||+|
T Consensus 194 ~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~S 273 (356)
T cd01365 194 LLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKS 273 (356)
T ss_pred HHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHH
Confidence 99999999999999999999999999999998765332 12334567999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHhhh--------CCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCch
Q psy9448 242 LLTLGRCITALVEK--------TPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRP 313 (583)
Q Consensus 242 L~~L~~vi~aL~~~--------~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~ 313 (583)
|++|++||.+|+++ ..|||||+||||+||||+||||++|+||+||||...+++||++||+||+|+|+|+|.|
T Consensus 274 L~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 274 LTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred HHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 99999999999864 4899999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q psy9448 314 EIN 316 (583)
Q Consensus 314 ~~n 316 (583)
++|
T Consensus 354 ~~~ 356 (356)
T cd01365 354 VVN 356 (356)
T ss_pred ccC
Confidence 876
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.5e-69 Score=565.23 Aligned_cols=287 Identities=51% Similarity=0.742 Sum_probs=265.4
Q ss_pred eeeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhh
Q psy9448 12 MMVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 91 (583)
Q Consensus 12 ~~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~ 91 (583)
....+.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+... ....|||||+++
T Consensus 46 ~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~--------~~~~Glipr~~~ 117 (333)
T cd01371 46 PPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREP--------PELRGIIPNSFA 117 (333)
T ss_pred CCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCc--------ccccchHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999997652 234699999999
Q ss_pred HHHHHHhhccceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhh
Q psy9448 92 HLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKR 171 (583)
Q Consensus 92 ~lf~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 171 (583)
+||+.+....+..|.|++||+|||+|+|+|||++... ..+.+++++ .++++|+|++++.|.|++|+..+|..|.++|
T Consensus 118 ~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~-~~l~i~~~~--~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R 194 (333)
T cd01371 118 HIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQK-KKLELKERP--DRGVYVKDLSMFVVKNAEEMDKLMTLGNKNR 194 (333)
T ss_pred HHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCC-CceeEEEcC--CCCEEeCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 9999999887789999999999999999999987552 468888877 5689999999999999999999999999999
Q ss_pred hhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHH
Q psy9448 172 QTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITA 251 (583)
Q Consensus 172 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~a 251 (583)
..++|.+|..|||||+||+|+|++.....++......|+|+|||||||||..+.+..+.+++|+..||+||.+|++||.+
T Consensus 195 ~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~a 274 (333)
T cd01371 195 SVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISA 274 (333)
T ss_pred ccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999876544344556689999999999999999999999999999999999999999999
Q ss_pred HhhhCC-CCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccC
Q psy9448 252 LVEKTP-HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309 (583)
Q Consensus 252 L~~~~~-~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i 309 (583)
|+++.. |||||+||||+||+|+||||++|+||+||+|...+++||++||+||+|||+|
T Consensus 275 l~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 275 LVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred HHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999875 9999999999999999999999999999999999999999999999999986
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.5e-69 Score=562.45 Aligned_cols=271 Identities=42% Similarity=0.610 Sum_probs=253.7
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..+.||+||+++++|++||+.+++|+|+++++|+|+||||||||||||||||+|+... +|||||++++|
T Consensus 51 ~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~-----------~Glipr~~~~l 119 (322)
T cd01367 51 HTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQ-----------EGLYALAARDI 119 (322)
T ss_pred ceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCc-----------CccHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999998643 49999999999
Q ss_pred HHHHhhccceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhhh
Q psy9448 94 FDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQT 173 (583)
Q Consensus 94 f~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~ 173 (583)
|+.++... .+|.|++||+|||+|+++|||++. .++++++++ .++++++|++++.|.|++|++++|..|.++|..
T Consensus 120 f~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~---~~l~i~~~~--~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~ 193 (322)
T cd01367 120 FRLLAQPN-DDLGVTVSFFEIYGGKLFDLLNDR---KRLSVLEDG--KGNVQIVGLTEKPVTSVDELLELIESGNSLRTT 193 (322)
T ss_pred HHHHhccc-cccEEEEEEEeeecCchhhhccCc---cceeEEEcC--CCCEEeCCCEEEEeCCHHHHHHHHHHHhccccc
Confidence 99998755 689999999999999999999873 468888887 678999999999999999999999999999999
Q ss_pred HHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccc-hhhhhhhhhcCcchhhhhhhhHHHHH
Q psy9448 174 AATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSG-AQDKRAREAGNINQSLLTLGRCITAL 252 (583)
Q Consensus 174 ~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~-~~~~~~~E~~~In~SL~~L~~vi~aL 252 (583)
++|.+|..|||||+||+|+|..... ....|+|+||||||||+..+.+ ..+.+++|+..||+||++|++||.+|
T Consensus 194 ~~t~~n~~SSRSH~i~~i~v~~~~~------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al 267 (322)
T cd01367 194 GSTGANDQSSRSHAILQIILKNKKL------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRAL 267 (322)
T ss_pred ccCcCCCCcccceEEEEEEEEEecC------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987653 2357999999999999998765 56889999999999999999999999
Q ss_pred hhhCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhc
Q psy9448 253 VEKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307 (583)
Q Consensus 253 ~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k 307 (583)
++++.||||||||||+||||+||||++|+||+||||...+++||++||+||+|+|
T Consensus 268 ~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 268 ASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred hcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999986
No 15
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=5.7e-69 Score=560.77 Aligned_cols=283 Identities=43% Similarity=0.652 Sum_probs=261.5
Q ss_pred eeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhH
Q psy9448 13 MVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92 (583)
Q Consensus 13 ~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 92 (583)
...+.||+||++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+... ....|||||++++
T Consensus 47 ~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~--------~~~~Glipr~~~~ 117 (334)
T cd01375 47 DFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTES--------YKDRGLIPRALEQ 117 (334)
T ss_pred ceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCc--------ccCCchHHHHHHH
Confidence 356889999999 9999999999999999999999999999999999999999997642 1246999999999
Q ss_pred HHHHHhhccceeEEEEEeehhhchHHhhhhcCCCC----ccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcc
Q psy9448 93 LFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD----DITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGS 168 (583)
Q Consensus 93 lf~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~----~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~ 168 (583)
||+.++...+..|.|++||+|||||+|+|||++.. ..+.+++++++ .++++|+|++++.|.+++|++.+|..|.
T Consensus 118 lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~--~~~~~v~gl~~~~v~s~~e~~~~~~~g~ 195 (334)
T cd01375 118 VFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDS--EQNIHVKGLSLHSATTEEEALNLLFLGE 195 (334)
T ss_pred HHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcC--CCCEEeCCcEEEEeCCHHHHHHHHHHHH
Confidence 99999998888999999999999999999999874 33578888887 6789999999999999999999999999
Q ss_pred hhhhhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhH
Q psy9448 169 QKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRC 248 (583)
Q Consensus 169 ~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~v 248 (583)
++|..++|.+|..|||||+||+|+|.+...... ......|+|+||||||||+..+.++.+..++|+..||+||++|++|
T Consensus 196 ~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~-~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~v 274 (334)
T cd01375 196 TNRTIAETSMNQASSRSHCIFTIHLESRSREAG-SEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQV 274 (334)
T ss_pred hhcccccCcCcCCcCcCeEEEEEEEEEEecCCC-CCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHH
Confidence 999999999999999999999999997743322 2345679999999999999999999999999999999999999999
Q ss_pred HHHHhhhC-CCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhc
Q psy9448 249 ITALVEKT-PHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307 (583)
Q Consensus 249 i~aL~~~~-~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k 307 (583)
|.+|+++. .||||||||||+||+|+|||||+|+||+||||...+++||++||+||+|++
T Consensus 275 i~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 275 INALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999988 999999999999999999999999999999999999999999999999985
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=6.6e-69 Score=557.23 Aligned_cols=273 Identities=40% Similarity=0.613 Sum_probs=255.3
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..+.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+... .|||||++++|
T Consensus 47 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~-----------~Glipr~~~~L 115 (319)
T cd01376 47 KKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNE-----------PGLIPRTLSDL 115 (319)
T ss_pred cEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCc-----------cchHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999998653 49999999999
Q ss_pred HHHHhhccceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhhh
Q psy9448 94 FDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQT 173 (583)
Q Consensus 94 f~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~ 173 (583)
|+.++... ..+.|++||+|||+|+|+|||++.. ..+.+.+++ .++++++|++++.|.|++|+.++|..|.++|..
T Consensus 116 f~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~--~~l~i~~~~--~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~ 190 (319)
T cd01376 116 LRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAK--KELPIREDK--DGNILIVGLTSKPIKSMAEFEEAYIPASKNRTV 190 (319)
T ss_pred HHHHhhcc-ccceEEEEEEEEECCEeeEccCCCC--CCceEEEcC--CCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhcc
Confidence 99887643 6899999999999999999999754 457787776 678999999999999999999999999999999
Q ss_pred HHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHHh
Q psy9448 174 AATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALV 253 (583)
Q Consensus 174 ~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL~ 253 (583)
++|.+|..|||||+||+|+|.+.... ....|+|+||||||||+..+++..+.+++|+..||+||++|++||.+|+
T Consensus 191 ~~t~~n~~SSRSH~i~~i~v~~~~~~-----~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~ 265 (319)
T cd01376 191 AATKLNDNSSRSHAVLRIKVTQPASN-----IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALN 265 (319)
T ss_pred ccCcCCCccCCCeEEEEEEEEEECCC-----ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHh
Confidence 99999999999999999999876532 2457999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhc
Q psy9448 254 EKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307 (583)
Q Consensus 254 ~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k 307 (583)
.+..|||||+||||+||||+||||++|+||+||||...+++||++||+||+|||
T Consensus 266 ~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 266 KGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred cCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999986
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=9e-69 Score=557.28 Aligned_cols=282 Identities=44% Similarity=0.693 Sum_probs=262.5
Q ss_pred eeeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhh
Q psy9448 12 MMVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 91 (583)
Q Consensus 12 ~~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~ 91 (583)
....+.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+... .|||||+++
T Consensus 38 ~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~-----------~Gli~r~~~ 106 (321)
T cd01374 38 PGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQE-----------PGIIPLAVR 106 (321)
T ss_pred CCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCC-----------CchHHHHHH
Confidence 346778999999999999999999999999999999999999999999999999998643 499999999
Q ss_pred HHHHHHhhccceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhh
Q psy9448 92 HLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKR 171 (583)
Q Consensus 92 ~lf~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 171 (583)
+||+.+....+..|.|++||+|||||+|+|||++.. ..+++++++ .++++++|++++.|.|++|+.++|+.|.++|
T Consensus 107 ~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~--~~l~i~~~~--~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R 182 (321)
T cd01374 107 DIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP--QELRIREDP--NKGVVVAGLTEEIVTSPEHLLQLIARGEKNR 182 (321)
T ss_pred HHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCC--CCceEEECC--CCCEEeCCceEEEeCCHHHHHHHHHHHHhcc
Confidence 999999888888999999999999999999999875 468888887 5689999999999999999999999999999
Q ss_pred hhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHH
Q psy9448 172 QTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITA 251 (583)
Q Consensus 172 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~a 251 (583)
+.++|.+|..|||||+||+|+|.+.............|+|+||||||+|+..+.+ .+.+++|+..||+||.+|++||.+
T Consensus 183 ~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~a 261 (321)
T cd01374 183 HVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISK 261 (321)
T ss_pred ccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999987654323344567999999999999999988 899999999999999999999999
Q ss_pred HhhhC--CCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccC
Q psy9448 252 LVEKT--PHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309 (583)
Q Consensus 252 L~~~~--~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i 309 (583)
|++++ .|||||+||||+||||+||||++|+||+||||...+++||++||+||+|+|+|
T Consensus 262 l~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 262 LSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99985 99999999999999999999999999999999999999999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.3e-68 Score=558.05 Aligned_cols=290 Identities=49% Similarity=0.737 Sum_probs=264.3
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..+.||+||+++++|++||+.+++|+|+++++|+|+||||||||||||||||+|+.... ......|||||++++|
T Consensus 40 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~-----~~~~~~Giipr~~~~L 114 (341)
T cd01372 40 KSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTAS-----EDEEEVGIIPRAIQHI 114 (341)
T ss_pred cEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccc-----cccccCChHHHHHHHH
Confidence 45779999999999999999999999999999999999999999999999999975421 1234579999999999
Q ss_pred HHHHhhccc-eeEEEEEeehhhchHHhhhhcCCCC-ccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhh
Q psy9448 94 FDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTD-DITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKR 171 (583)
Q Consensus 94 f~~~~~~~~-~~~~v~vS~~EIyne~v~DLL~~~~-~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 171 (583)
|+.+....+ .+|.|.+||+|||||+|+|||++.. ....+.+++++ .+++++.|++++.|.|++|++++|..|.++|
T Consensus 115 F~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~--~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R 192 (341)
T cd01372 115 FKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDS--KGNIIIVGLTEVTVNSAQEVMSCLEQGSLSR 192 (341)
T ss_pred HHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECC--CCCEecCCCEEEEECCHHHHHHHHHHHHHhc
Confidence 999987665 7899999999999999999999864 23578888876 6889999999999999999999999999999
Q ss_pred hhHHHHhhhcccCceeEEEEEEEeecCCC-------ChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhh
Q psy9448 172 QTAATLMNAHSSRSHTIFTITIHIKDNSL-------DGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLT 244 (583)
Q Consensus 172 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~~-------~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~ 244 (583)
..++|.+|..|||||+||+|+|.+..... +.......|+|+||||||+|+..++++.+.+++|+..||+||.+
T Consensus 193 ~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~a 272 (341)
T cd01372 193 TTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLA 272 (341)
T ss_pred ccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHH
Confidence 99999999999999999999998876431 12234567999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhhC---CCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCC
Q psy9448 245 LGRCITALVEKT---PHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNIT 310 (583)
Q Consensus 245 L~~vi~aL~~~~---~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~ 310 (583)
|++||.+|+.++ .|||||+||||+||+|+||||++|+||+||||...+++||++||+||+|+|+|+
T Consensus 273 L~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 273 LGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999876 799999999999999999999999999999999999999999999999999986
No 19
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.2e-67 Score=549.95 Aligned_cols=281 Identities=46% Similarity=0.734 Sum_probs=259.3
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..+.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|+... ....||+||++++|
T Consensus 43 ~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~--------~~~~Giipr~~~~L 114 (325)
T cd01369 43 KTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGD--------PELKGIIPRIVHDI 114 (325)
T ss_pred eEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCc--------cccCChHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999998752 23469999999999
Q ss_pred HHHHhhcc-ceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhh
Q psy9448 94 FDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172 (583)
Q Consensus 94 f~~~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 172 (583)
|+.+.... +.+|.|++||+|||+|+++|||++.. ..+++++++ .++++++|++++.|.|++|+.++|..|.++|+
T Consensus 115 f~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~--~~l~i~~~~--~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~ 190 (325)
T cd01369 115 FEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK--DNLQVHEDK--NRGVYVKGLTERFVSSPEEVLEVINEGKSNRA 190 (325)
T ss_pred HHHHhhccCCceEEEEEEEEEEECCChhhcccCcc--CCceEEEcC--CCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcc
Confidence 99997753 45799999999999999999998764 357777776 67899999999999999999999999999999
Q ss_pred hHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHH
Q psy9448 173 TAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 252 (583)
Q Consensus 173 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL 252 (583)
.++|.+|..|||||+||+|+|.+..... .....|+|+||||||+|+..+.++.+.+++|+..||+||++|++||.+|
T Consensus 191 ~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL 267 (325)
T cd01369 191 VASTNMNEESSRSHSIFLITLKQENVET---GSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINAL 267 (325)
T ss_pred cccCcCCCccccccEEEEEEEEEEecCC---CCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999998765321 2245799999999999999999999999999999999999999999999
Q ss_pred hhhC-CCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccC
Q psy9448 253 VEKT-PHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309 (583)
Q Consensus 253 ~~~~-~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i 309 (583)
+++. .|+|||+||||+||+|+|||+++|+||+||||...+++||++||+||+|||+|
T Consensus 268 ~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 268 TDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9987 99999999999999999999999999999999999999999999999999986
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.1e-66 Score=541.74 Aligned_cols=283 Identities=45% Similarity=0.662 Sum_probs=262.5
Q ss_pred eeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhH
Q psy9448 13 MVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92 (583)
Q Consensus 13 ~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 92 (583)
...+.||+||+++++|++||+. +.|+|+++++|+|+||||||+|||||||||+|+... .||+||++++
T Consensus 44 ~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~-----------~Gli~r~~~~ 111 (329)
T cd01366 44 KKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPEN-----------PGIIPRALEQ 111 (329)
T ss_pred ceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCC-----------CCcHHHHHHH
Confidence 3567899999999999999998 599999999999999999999999999999998643 4999999999
Q ss_pred HHHHHhhcc--ceeEEEEEeehhhchHHhhhhcCCCC-ccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcch
Q psy9448 93 LFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTD-DITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQ 169 (583)
Q Consensus 93 lf~~~~~~~--~~~~~v~vS~~EIyne~v~DLL~~~~-~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~ 169 (583)
||+.++... +..|.|++||+|||+|+++|||++.. ...++++++++ .++++++|++++.|.|++|+.++|..|.+
T Consensus 112 lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~--~~~~~i~~l~~~~v~s~~e~~~~l~~~~~ 189 (329)
T cd01366 112 LFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDS--KGETYVTNLTEVPVSSPEEVTRLLNLGSK 189 (329)
T ss_pred HHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECC--CCCEEecCCEEEEeCCHHHHHHHHHHHHh
Confidence 999998765 47899999999999999999999863 24578888887 68899999999999999999999999999
Q ss_pred hhhhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHH
Q psy9448 170 KRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCI 249 (583)
Q Consensus 170 ~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi 249 (583)
+|..++|.+|..|||||+||+|+|.+.... ......|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||
T Consensus 190 ~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~---~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl 266 (329)
T cd01366 190 NRSVASTNMNEHSSRSHAVFQLKIRGTNLQ---TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVI 266 (329)
T ss_pred hcccccccccCCCCCccEEEEEEEEEEcCC---CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHH
Confidence 999999999999999999999999876543 22345799999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCc
Q psy9448 250 TALVEKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNR 312 (583)
Q Consensus 250 ~aL~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~ 312 (583)
.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||++||+||+|+++|++.
T Consensus 267 ~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 267 SALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999863
No 21
>KOG0239|consensus
Probab=100.00 E-value=1.3e-66 Score=574.89 Aligned_cols=284 Identities=43% Similarity=0.627 Sum_probs=263.0
Q ss_pred eeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecc-cCCCCCCCcccCCCCccchhhhhHH
Q psy9448 15 VSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE-KSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 15 ~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~-~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
.|.||+||+|.++|++||..+ .|+|.++++|||+||||||||||||||||.|+ +. .+||+||++++|
T Consensus 361 ~f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~-----------~~Giipral~~l 428 (670)
T KOG0239|consen 361 SFKFDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPE-----------DPGIIPRALEKL 428 (670)
T ss_pred cceeeeecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCCCcc-----------cCCccHHHHHHH
Confidence 477999999999999999996 99999999999999999999999999999995 33 259999999999
Q ss_pred HHHHhhcc-ceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhh
Q psy9448 94 FDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172 (583)
Q Consensus 94 f~~~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 172 (583)
|..+.... .+.|.+.+||+|||||.|+|||++.....++.|+.+. ++...|.+++.+.|.+.+++..+++.|..+|+
T Consensus 429 F~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~--~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRs 506 (670)
T KOG0239|consen 429 FRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDA--EGNLMVPLLTVIKVGSSEEVDILLEIGLSNRS 506 (670)
T ss_pred HHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcC--CCceecccceEEecCCHHHHHHHHHHhhcccc
Confidence 99988754 6899999999999999999999876544678888876 56799999999999999999999999999999
Q ss_pred hHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHH
Q psy9448 173 TAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 252 (583)
Q Consensus 173 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL 252 (583)
+++|.+|.+|||||+||+++|...... .+....+.|+|||||||||++++++.|.|++|+++||+||++||+||.||
T Consensus 507 v~~T~~Ne~SSRSH~v~~v~v~g~~~~---t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL 583 (670)
T KOG0239|consen 507 VASTASNERSSRSHLVFRVRIRGINEL---TGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISAL 583 (670)
T ss_pred ccccccchhhhccceEEEEEEeccccC---cccccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHH
Confidence 999999999999999999999866432 23346799999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhh
Q psy9448 253 VEKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEI 315 (583)
Q Consensus 253 ~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~ 315 (583)
+.+..|||||+||||+|||++|||++||+|+++|||...++.||+++|+||.|++.+...+..
T Consensus 584 ~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 584 ASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 999999999999999999999999999999999999999999999999999999999877654
No 22
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2e-66 Score=544.01 Aligned_cols=287 Identities=50% Similarity=0.753 Sum_probs=259.1
Q ss_pred eeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhH
Q psy9448 13 MVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92 (583)
Q Consensus 13 ~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 92 (583)
...+.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+.. ...+||+||++++
T Consensus 40 ~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~---------~~~~Gli~~~~~~ 110 (335)
T PF00225_consen 40 EKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSND---------PSEPGLIPRALRD 110 (335)
T ss_dssp EEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTS---------TTTBSHHHHHHHH
T ss_pred ceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecccccccccccccccc---------ccccchhhhHHHH
Confidence 3567799999999999999999999999999999999999999999999999999811 1235999999999
Q ss_pred HHHHHhhccc---eeEEEEEeehhhchHHhhhhcCCCC--ccceEEeeeccccccceEEeccceeeecchhHHHHHHHhc
Q psy9448 93 LFDELRLLGD---AEFTVRVSFLEIYNEELIDLLSPTD--DITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKG 167 (583)
Q Consensus 93 lf~~~~~~~~---~~~~v~vS~~EIyne~v~DLL~~~~--~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g 167 (583)
||..++...+ ..|.|++||+|||+|+|+|||++.. ...++++++++. .|.++++|++++.|.+++|++++|..|
T Consensus 111 lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~-~g~~~i~~l~~~~v~s~~~~~~~l~~~ 189 (335)
T PF00225_consen 111 LFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSN-KGSVYIKGLTEVEVKSAEEALQLLKKG 189 (335)
T ss_dssp HHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETT-TEEEEETTSEEEEESSHHHHHHHHHHH
T ss_pred HhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeeccc-cccceeeccccccccccccccccccch
Confidence 9999988654 5899999999999999999999874 345799998874 345999999999999999999999999
Q ss_pred chhhhhHHHHhhhcccCceeEEEEEEEeecCCCChh-hHhhccCceeeeccCCcccCccch-hhhhhhhhcCcchhhhhh
Q psy9448 168 SQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGE-ELLRTGKLNLVDLAGSENIGRSGA-QDKRAREAGNINQSLLTL 245 (583)
Q Consensus 168 ~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~-~~~~~s~L~~VDLAGsEr~~~~~~-~~~~~~E~~~In~SL~~L 245 (583)
.++|....+.+|..|||||+||+|+|.+........ .....|+|+||||||+|+..+.++ .+.+.+|+..||+||.+|
T Consensus 190 ~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L 269 (335)
T PF00225_consen 190 QKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSAL 269 (335)
T ss_dssp HHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhh
Confidence 999999999999999999999999999876543322 124679999999999999998886 478899999999999999
Q ss_pred hhHHHHHhhh--CCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccC
Q psy9448 246 GRCITALVEK--TPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309 (583)
Q Consensus 246 ~~vi~aL~~~--~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i 309 (583)
++||.+|+.+ ..|+|||+||||+||||+|||||+|+||+||||...+++||++||+||+++|+|
T Consensus 270 ~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 270 GNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred hhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999998 999999999999999999999999999999999999999999999999999986
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=6.2e-65 Score=532.37 Aligned_cols=287 Identities=52% Similarity=0.781 Sum_probs=265.9
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
..+.||+||+++++|++||+.++.|+|+++++|+|+|||+||+|||||||||+|+... .||+||++++|
T Consensus 46 ~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~-----------~Gli~~~~~~L 114 (335)
T smart00129 46 KKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDS-----------PGIIPRALKDL 114 (335)
T ss_pred eEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCC-----------CCHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999997643 49999999999
Q ss_pred HHHHhhcc-ceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhh
Q psy9448 94 FDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172 (583)
Q Consensus 94 f~~~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 172 (583)
|+.+.... +..|.|++||+|||+|+++|||++.. ..+++.+++ .++++++|++++.|.|++|+.++|..|.++|.
T Consensus 115 f~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~--~~l~i~~~~--~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~ 190 (335)
T smart00129 115 FEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSP--KKLEIREDK--KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRT 190 (335)
T ss_pred HHHhhhcccCceEEEEEEEEEEECCEEEECcCCCC--CCcEEEECC--CCCEEecCCEEEEeCCHHHHHHHHHHHHhccc
Confidence 99997754 56899999999999999999998764 568888876 57899999999999999999999999999999
Q ss_pred hHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHH
Q psy9448 173 TAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITAL 252 (583)
Q Consensus 173 ~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL 252 (583)
.++|.+|..|||||+||+|+|.+..... .......|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+|
T Consensus 191 ~~~t~~n~~ssRsH~i~~l~v~~~~~~~-~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l 269 (335)
T smart00129 191 VAATKMNEESSRSHAVFTITVESKIKNS-SSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINAL 269 (335)
T ss_pred cccCCCCCCCCcceEEEEEEEEEEecCC-CCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHH
Confidence 9999999999999999999999663322 223456899999999999999999999999999999999999999999999
Q ss_pred hh--hCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhh
Q psy9448 253 VE--KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEIN 316 (583)
Q Consensus 253 ~~--~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n 316 (583)
++ +..|+|||+||||+||+++|+|+++++||+||||...+++||++||+||+++++|+|+|++|
T Consensus 270 ~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 270 ADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 98 57799999999999999999999999999999999999999999999999999999999865
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.5e-63 Score=520.69 Aligned_cols=281 Identities=50% Similarity=0.745 Sum_probs=260.9
Q ss_pred eeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhH
Q psy9448 13 MVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92 (583)
Q Consensus 13 ~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 92 (583)
...+.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+... .|||||++++
T Consensus 44 ~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~-----------~Gli~~~~~~ 112 (328)
T cd00106 44 PKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKD-----------PGIIPRALED 112 (328)
T ss_pred ceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCCC-----------CchHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999998753 4999999999
Q ss_pred HHHHHhhcc--ceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchh
Q psy9448 93 LFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQK 170 (583)
Q Consensus 93 lf~~~~~~~--~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~ 170 (583)
||+.++... ...+.|++||+|||+|+|+|||++.....++.+++++ .++++++|++++.|.|++|++++|..|.++
T Consensus 113 Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~--~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~ 190 (328)
T cd00106 113 LFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDP--KGGVYVKGLTEVEVGSAEDALSLLQKGLKN 190 (328)
T ss_pred HHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcC--CCCEEEeCCEEEEeCCHHHHHHHHHHHHhh
Confidence 999998875 5789999999999999999999987445678888876 578999999999999999999999999999
Q ss_pred hhhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHH
Q psy9448 171 RQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCIT 250 (583)
Q Consensus 171 R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~ 250 (583)
|..++|.+|..|||||+||+|+|.+........ ....|+|+||||||+|+..+.+..+.++.|+..||+||.+|++||.
T Consensus 191 R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~-~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~ 269 (328)
T cd00106 191 RTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR-SIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVIS 269 (328)
T ss_pred cCcccCcCCCCcCcCcEEEEEEEEEEecCCCCc-cEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHH
Confidence 999999999999999999999999876432211 2457999999999999999999999999999999999999999999
Q ss_pred HHhhhC--CCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhc
Q psy9448 251 ALVEKT--PHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307 (583)
Q Consensus 251 aL~~~~--~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k 307 (583)
+|+.+. .|||||+||||+||||+|+|+++++||+||+|...+++||++||+||+|||
T Consensus 270 ~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 270 ALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred HHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999988 999999999999999999999999999999999999999999999999986
No 25
>KOG0244|consensus
Probab=100.00 E-value=3.2e-64 Score=549.77 Aligned_cols=315 Identities=44% Similarity=0.631 Sum_probs=283.3
Q ss_pred eeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHHHH
Q psy9448 16 SVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 95 (583)
Q Consensus 16 ~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~ 95 (583)
++||+||+...+|.++|+.+|+|+++.+|+|||+|++|||||||||||||.+..... ....|+|||+++.+|.
T Consensus 34 ~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~-------~~~~Gvipr~v~~~f~ 106 (913)
T KOG0244|consen 34 FTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPA-------QDTVGVIPRAVSTLFT 106 (913)
T ss_pred eeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccc-------cccCCcCcchHHHHHH
Confidence 578999999999999999999999999999999999999999999999998874321 1125999999999999
Q ss_pred HHhhccceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhhhHH
Q psy9448 96 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAA 175 (583)
Q Consensus 96 ~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~ 175 (583)
.+.......|.|.|||+|||+|.|+|||.|......+++.+ + +|++.+.|+++..|.+..++...|..|...|++++
T Consensus 107 ~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~--~g~it~~glte~tv~~~~q~~~~L~~g~~~Rtvas 183 (913)
T KOG0244|consen 107 RIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-P--KGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVAS 183 (913)
T ss_pred HHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-c--CCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 99987777899999999999999999999766555666665 3 68899999999999999999999999999999999
Q ss_pred HHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHHhhh
Q psy9448 176 TLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK 255 (583)
Q Consensus 176 t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL~~~ 255 (583)
|+||..|||||+||++.+.+..... ......+||+|||||||||.++++++|.|++|+.+||.+|++||+||.||.+.
T Consensus 184 TnMN~qssRshAifti~lkq~kk~~--~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~ 261 (913)
T KOG0244|consen 184 TNMNAQSSRSHAIFTITLKQRKKLS--KRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEA 261 (913)
T ss_pred HhcchhhhhhhHHHHHHHHHHHHhh--ccchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhh
Confidence 9999999999999999998654321 22234689999999999999999999999999999999999999999999986
Q ss_pred CC--CCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhhhhHHHHHHHHHHHHH
Q psy9448 256 TP--HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRVTSINME 333 (583)
Q Consensus 256 ~~--~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~~~~~~~~~~~~~e~~ 333 (583)
.. |+|||+|||||||||+||||+.|+||+||||+..+.+||++||+||.||++|+|+|.+|.+. ....+..++.+++
T Consensus 262 kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~-~~~~~~~lK~ql~ 340 (913)
T KOG0244|consen 262 KKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDP-KSFEMLKLKAQLE 340 (913)
T ss_pred hcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccH-HHHHHHHHHHHHH
Confidence 65 99999999999999999999999999999999999999999999999999999999999964 3467788888888
Q ss_pred HhhhhhhhHhh
Q psy9448 334 ETLSTLDYAHR 344 (583)
Q Consensus 334 ~~l~~~~~~~~ 344 (583)
. |+.++...+
T Consensus 341 ~-l~~ell~~~ 350 (913)
T KOG0244|consen 341 P-LQVELLSKA 350 (913)
T ss_pred H-HHHHHHhhc
Confidence 8 777776554
No 26
>KOG0246|consensus
Probab=100.00 E-value=9.3e-63 Score=509.62 Aligned_cols=285 Identities=38% Similarity=0.566 Sum_probs=256.6
Q ss_pred eeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHH
Q psy9448 14 VVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 93 (583)
Q Consensus 14 ~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 93 (583)
+.|-||++|+..++++.||..+++|||+.+|+|--+|+||||||||||||||.|..... ..+...||..++.+|+
T Consensus 258 ~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk-----~q~~s~giya~aa~Dv 332 (676)
T KOG0246|consen 258 QKFRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGK-----AQDCSKGIYALAARDV 332 (676)
T ss_pred ceEEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcc-----cccccccchhhhhhHH
Confidence 56779999999999999999999999999999999999999999999999999876532 3345679999999999
Q ss_pred HHHHhhc--cceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhh
Q psy9448 94 FDELRLL--GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKR 171 (583)
Q Consensus 94 f~~~~~~--~~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 171 (583)
|..++.. ...++.|++||||||+.+|||||++ +.++++.+|. +..|.|-||++..|.+.+|++.+|+.|+..|
T Consensus 333 f~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~---k~KLrvLEDg--~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~R 407 (676)
T KOG0246|consen 333 FRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND---KKKLRVLEDG--NQQVQVVGLQEEEVSGVEEVLELIEKGNSCR 407 (676)
T ss_pred HHHhcccchhhcceEEEEEEEEEeCcchhhhhcc---ccceEEeecC--CceEEEeeceeeeccCHHHHHHHHHhccccc
Confidence 9988763 3457899999999999999999986 3578888886 7789999999999999999999999999999
Q ss_pred hhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccc-hhhhhhhhhcCcchhhhhhhhHHH
Q psy9448 172 QTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSG-AQDKRAREAGNINQSLLTLGRCIT 250 (583)
Q Consensus 172 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~-~~~~~~~E~~~In~SL~~L~~vi~ 250 (583)
+.+.|..|..|||||+||+|.+..... ...+|++.||||||+||...+. +..+...|+..|||||+||..||+
T Consensus 408 tsG~TsANs~SSRSHAvfQIilr~~~~------~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIR 481 (676)
T KOG0246|consen 408 TSGQTSANSNSSRSHAVFQIILRKHGE------FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIR 481 (676)
T ss_pred ccCcccCcccccccceeEeeeeecCCc------ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999999999974321 2357999999999999987665 445566799999999999999999
Q ss_pred HHhhhCCCCCcchhhHhHHhhhhcCC-cceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchh
Q psy9448 251 ALVEKTPHIPYRESKLTRLLQDSLGG-RTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPE 314 (583)
Q Consensus 251 aL~~~~~~ipyR~SkLT~lL~d~Lgg-n~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~ 314 (583)
||...+.|+|||.||||++|+|+|=| |++|+||+||||....-+.||+|||||.|+|.....+.
T Consensus 482 aLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 482 ALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred HhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999977 99999999999999999999999999999999765443
No 27
>KOG0247|consensus
Probab=100.00 E-value=1.5e-62 Score=521.68 Aligned_cols=295 Identities=37% Similarity=0.588 Sum_probs=265.3
Q ss_pred cCCcceeeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccc
Q psy9448 7 TGLNTMMVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV 86 (583)
Q Consensus 7 ~~~~~~~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Gii 86 (583)
-+++.+-.++-|-+||+|.++|.+||+.++.|+|.+++.|.|..+|+||.|||||||||+|++..+ ||+
T Consensus 74 ~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~-----------GIl 142 (809)
T KOG0247|consen 74 VNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRP-----------GIL 142 (809)
T ss_pred cCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCC-----------Cch
Confidence 367788888889999999999999999999999999999999999999999999999999988753 999
Q ss_pred hhhhhHHHHHHhhc-----------------------------------------------------------------c
Q psy9448 87 PRAMNHLFDELRLL-----------------------------------------------------------------G 101 (583)
Q Consensus 87 pr~~~~lf~~~~~~-----------------------------------------------------------------~ 101 (583)
||+++-||..|+.. .
T Consensus 143 PR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~ 222 (809)
T KOG0247|consen 143 PRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDE 222 (809)
T ss_pred HHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCc
Confidence 99999999766421 1
Q ss_pred ceeEEEEEeehhhchHHhhhhcCCCCccc---e-EEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhhhHHHH
Q psy9448 102 DAEFTVRVSFLEIYNEELIDLLSPTDDIT---K-LRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATL 177 (583)
Q Consensus 102 ~~~~~v~vS~~EIyne~v~DLL~~~~~~~---~-l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~ 177 (583)
+..|.|+|||+|||||-|||||.+.+... . ..+++|. ++.+||+|++++.|.+.+|++++|+.|.++|+.++|.
T Consensus 223 d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~--~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~ 300 (809)
T KOG0247|consen 223 DIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDT--NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTK 300 (809)
T ss_pred CcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhcc--CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhhee
Confidence 23588999999999999999998765322 2 3445554 7889999999999999999999999999999999999
Q ss_pred hhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHHhhh--
Q psy9448 178 MNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK-- 255 (583)
Q Consensus 178 ~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL~~~-- 255 (583)
.|..|||||+||+|.|-+...+ .+...++.|.|.|||||||||..++++.|.|++|+.+||.||++||+||.+|.++
T Consensus 301 lN~~SSRSHsVFtIkl~q~~~~-~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk 379 (809)
T KOG0247|consen 301 LNANSSRSHSVFTIKLVQAPRS-QDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQK 379 (809)
T ss_pred ccccccccceeEEEEeeecccc-cccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999876644 2445678899999999999999999999999999999999999999999999864
Q ss_pred ---CCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhh
Q psy9448 256 ---TPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEI 315 (583)
Q Consensus 256 ---~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~ 315 (583)
+.+|||||||||++++.+|.|+.+++||.||+|.+.+|+|+++.|+||.-+..|.+.+.+
T Consensus 380 ~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 380 SKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred hhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCcc
Confidence 478999999999999999999999999999999999999999999999999998775544
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-62 Score=540.37 Aligned_cols=379 Identities=44% Similarity=0.656 Sum_probs=315.1
Q ss_pred eeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhH
Q psy9448 13 MVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 92 (583)
Q Consensus 13 ~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 92 (583)
...+.||+||++.++|++||+..+.|++++++.|||+||||||||||||||||.|.... .||||+++.+
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~-----------~Gii~~~l~~ 123 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEE-----------PGIIPLSLKE 123 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccc-----------cchHHHHHHH
Confidence 56688999999999999999999999999999999999999999999999999998753 4999999999
Q ss_pred HHHHHhhcc-ceeEEEEEeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhh
Q psy9448 93 LFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKR 171 (583)
Q Consensus 93 lf~~~~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R 171 (583)
||+.+.... +..+.|.+||+|||||+++|||.+.... +.+.++. .+++.+.++++..+.+.+|++.+|++|..+|
T Consensus 124 lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~--~~~~~~~--~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr 199 (568)
T COG5059 124 LFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES--LNIREDS--LLGVKVAGLTEKHVSSKEEILDLLRKGEKNR 199 (568)
T ss_pred HHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc--ccccccC--CCceEeecceEEecCChHHHHHHHHHhhhhc
Confidence 999988754 4579999999999999999999986643 4555554 6889999999999999999999999999999
Q ss_pred hhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHH
Q psy9448 172 QTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITA 251 (583)
Q Consensus 172 ~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~a 251 (583)
+++.|.+|..|||||++|++++.+.....+. ...++|++|||||||++..++..+.++.|+..||+||.+||+||.+
T Consensus 200 ~~~~te~n~~ssRshsi~~i~~~~~~~~~~~---~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~ 276 (568)
T COG5059 200 TTASTEINDESSRSHSIFQIELASKNKVSGT---SETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINA 276 (568)
T ss_pred ccccchhccccccceEEEEEEEEEeccCccc---eecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHH
Confidence 9999999999999999999999877644322 2337999999999999999999999999999999999999999999
Q ss_pred Hhh--hCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhhhhHHHHHHHHH
Q psy9448 252 LVE--KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRVTS 329 (583)
Q Consensus 252 L~~--~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~~~~~~~~~~~~ 329 (583)
|.+ +..|||||+|||||+|+++|||+++|.|||||+|...+++||.+||+||.||+.|+|.+..|... ...
T Consensus 277 L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~-------~~~ 349 (568)
T COG5059 277 LGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSS-------DSS 349 (568)
T ss_pred HhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcC-------cch
Confidence 997 78999999999999999999999999999999999999999999999999999999999888520 011
Q ss_pred HHHHHhhhhhhhHhhhccCCCCccccccCCCchHHhhccceeeeecCCCceeEEeeecccccccccccccccccccccce
Q psy9448 330 INMEETLSTLDYAHRAKNITNRPEINQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVD 409 (583)
Q Consensus 330 ~e~~~~l~~~~~~~~~~~~~~~~~~~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~ 409 (583)
.++.+ |.||.+|.+...+..
T Consensus 350 ~~~~~------------------------------------------------------------~~~d~~~~~~~~~~~ 369 (568)
T COG5059 350 REIEE------------------------------------------------------------IKFDLSEDRSEIEIL 369 (568)
T ss_pred HHHHH------------------------------------------------------------HHhhhhhhhhhhhhH
Confidence 11222 333444444333333
Q ss_pred eehhhhhhhHHHHhcccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcc--ccceeEEE
Q psy9448 410 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVR 487 (583)
Q Consensus 410 vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~--~~~~~~v~ 487 (583)
++... ..+++..++| +++|+++++++++||.-. ..++.+-.+...|...+.. ..+.+...
T Consensus 370 ~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 431 (568)
T COG5059 370 VFREQ-SQLSQSSLSG----IFAYMQSLKKETETLKSR-------------IDLIMKSIISGTFERKKLLKEEGWKYKST 431 (568)
T ss_pred HHHHH-Hhhhhhhhhh----HHHHHhhhhhhhhcccch-------------hhhhhhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 33332 3344555555 789999999999999532 1256666657777765443 34566666
Q ss_pred Eeeeeec
Q psy9448 488 VSFLEIY 494 (583)
Q Consensus 488 ~S~~eiy 494 (583)
+-+.++|
T Consensus 432 ~~~~~~~ 438 (568)
T COG5059 432 LQFLRIE 438 (568)
T ss_pred HHHHHHH
Confidence 7777777
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=5.2e-48 Score=370.57 Aligned_cols=179 Identities=54% Similarity=0.860 Sum_probs=167.6
Q ss_pred EeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHHHHHHhhccceeEEEEEe
Q psy9448 31 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVS 110 (583)
Q Consensus 31 vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~vS 110 (583)
||+.++ |+|+.+++|+|+||||||||||||||||+|++. ..||+||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~-----------~~Giip~~~~~------------------ 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKRE-----------GAGIIPRTVTD------------------ 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCC-----------CCCcchHHHHH------------------
Confidence 899998 999999999999999999999999999999864 35999999987
Q ss_pred ehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhhhHHHHhhhcccCceeEEE
Q psy9448 111 FLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFT 190 (583)
Q Consensus 111 ~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~ 190 (583)
+++++..|.++|..+.|.+|..|||||+||+
T Consensus 58 -------------------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~ 88 (186)
T cd01363 58 -------------------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFR 88 (186)
T ss_pred -------------------------------------------------HHHHHhhccccccccccCCCCccCcccEEEE
Confidence 7889999999999999999999999999999
Q ss_pred EEEEeecCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHHhhhCCCCCcchhhHhHHh
Q psy9448 191 ITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRLL 270 (583)
Q Consensus 191 i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL 270 (583)
|++.+......+......++|+||||||||+..+.+..+.+++|+..||+||.+|++||.+|++++.|+|||+||||+||
T Consensus 89 i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL 168 (186)
T cd01363 89 IHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLL 168 (186)
T ss_pred EEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHH
Confidence 99998765543444556899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcceeeEEEEeCc
Q psy9448 271 QDSLGGRTKTSIIATVSP 288 (583)
Q Consensus 271 ~d~Lggn~~t~~I~~vsp 288 (583)
||+|||||+|+||+||||
T Consensus 169 ~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 169 QDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHhcCCCCeEEEEEEeCc
Confidence 999999999999999998
No 30
>KOG0243|consensus
Probab=100.00 E-value=1.8e-43 Score=392.92 Aligned_cols=218 Identities=40% Similarity=0.643 Sum_probs=185.8
Q ss_pred CCCccccccCCCchHHhhccceeeeecCC-CceeEEeeecc-cccccccccccccccccccceeehhhhhhhHHHHhccc
Q psy9448 349 TNRPEINQKMPLNSVERAAKSCSIVDCSS-SREITIKERVN-DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY 426 (583)
Q Consensus 349 ~~~~~~~qk~P~~~~E~a~~~~~iV~~~~-~~~~~~~~~~~-~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~ 426 (583)
.|..-+-+-||++++|+..++..+|.|.+ +++|.+..... ....|+|+||+||+|++.|.+||+.++.|+|+.|+.||
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~Gy 128 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGY 128 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccC
Confidence 34445667899999999999999999988 67788877622 23678999999999999999999999999999999999
Q ss_pred ceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCc
Q psy9448 427 NCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD 506 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~ 506 (583)
|||||||||||+||||||.|..... .|..++.+|||||++.+||..++..+ .+|+|+|||+|+|||+|+|||+|..
T Consensus 129 NCTIFAYGQTGTGKTyTMeG~~~~~---~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 129 NCTIFAYGQTGTGKTYTMEGGERKK---NGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred CceEEEecCCCCCceeeeecCcccc---cCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCcc
Confidence 9999999999999999999975443 26678889999999999999998865 7999999999999999999999876
Q ss_pred cc-cccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeec
Q psy9448 507 DI-TKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRA 581 (583)
Q Consensus 507 ~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~ 581 (583)
.. .+++.-.+.++. +..+..++.|+-+..|.+..|.+.+|++|...|.+|.|. |||||+||.|
T Consensus 205 ~~~~~~~~k~~~~~~------------~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsI 272 (1041)
T KOG0243|consen 205 TSDKKLRIKDDSTIV------------DGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSI 272 (1041)
T ss_pred ccccccccccCCccc------------CCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEE
Confidence 54 222211110000 677888899999999999999999999999999999888 9999999998
Q ss_pred c
Q psy9448 582 R 582 (583)
Q Consensus 582 ~ 582 (583)
-
T Consensus 273 t 273 (1041)
T KOG0243|consen 273 T 273 (1041)
T ss_pred E
Confidence 5
No 31
>KOG0245|consensus
Probab=100.00 E-value=2.8e-41 Score=368.52 Aligned_cols=200 Identities=25% Similarity=0.428 Sum_probs=168.1
Q ss_pred ccccCCCchHHhhccceeeeecCCCceeEEeeeccccccccccccccccc-------ccccceeehhhhhhhHHHHhccc
Q psy9448 354 INQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQ-------ESKQVDVYKYVVNPLIDEVLSGY 426 (583)
Q Consensus 354 ~~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~~~~k~f~fD~vf~~-------~~~q~~vy~~~~~~~v~~~l~G~ 426 (583)
..+-||||++|..+.+.+||.+.++.+..+.++..... ..|+||++|+. .++|..||+.++.++++.+|+||
T Consensus 9 AVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~-~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGY 87 (1221)
T KOG0245|consen 9 AVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDA-PKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGY 87 (1221)
T ss_pred EEEeccchhhhhhcccceEEEecCCceeeecCCCcccC-CceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhccc
Confidence 34679999999999999999998877777776644433 44999999965 46799999999999999999999
Q ss_pred ceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcc--ccceeEEEEeeeeechHhhhhccC-
Q psy9448 427 NCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLS- 503 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~--~~~~~~v~~S~~eiy~e~i~DLL~- 503 (583)
|+||||||||||||+|||||.... .++|||||.|++||+++... .+..|+|.|||+|||||+|+|||+
T Consensus 88 N~ClFAYGQTGSGKSYTMMG~~~~---------~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~ 158 (1221)
T KOG0245|consen 88 NVCLFAYGQTGSGKSYTMMGFQEP---------DEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNA 158 (1221)
T ss_pred ceEEEEeccCCCCcceeeeccCCC---------CCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhC
Confidence 999999999999999999997621 23599999999999999754 445899999999999999999998
Q ss_pred C-CccccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCcccee
Q psy9448 504 P-TDDITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLI 578 (583)
Q Consensus 504 ~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~i 578 (583)
| .+..+++|+.+..|.||+++.. ..|.+..+...++..||+.||+|+|. |||||+|
T Consensus 159 p~~kg~LRVREHP~lGPYVedLS~-------------------~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaV 219 (1221)
T KOG0245|consen 159 PKSKGGLRVREHPILGPYVEDLSK-------------------LAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAV 219 (1221)
T ss_pred CCCCCCceeeccCccChhHhHhhh-------------------cccccHHHHHHHHHhcchhhhhhhhccccccccceeE
Confidence 4 4567888988888888877665 34555566666888899999988887 9999999
Q ss_pred eecc
Q psy9448 579 LRAR 582 (583)
Q Consensus 579 f~~~ 582 (583)
|+|-
T Consensus 220 FtIv 223 (1221)
T KOG0245|consen 220 FTIV 223 (1221)
T ss_pred EEEE
Confidence 9983
No 32
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=9.8e-41 Score=348.70 Aligned_cols=199 Identities=33% Similarity=0.530 Sum_probs=173.5
Q ss_pred cccCCCchHHhhccceeeeecCCCceeEEeeecc----------cccccccccccccccccccceeehhhhhhhHHHHhc
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSSREITIKERVN----------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLS 424 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~----------~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~ 424 (583)
-+.||+++.|...+..+++.+.+++.+.+.++.. ....+.|.||+||+++++|++||+.++.|+|+.+++
T Consensus 6 vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~ 85 (338)
T cd01370 6 VRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLVDGVLN 85 (338)
T ss_pred EEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3679999999888888899888887777766532 223678999999999999999999999999999999
Q ss_pred ccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccc-cceeEEEEeeeeechHhhhhccC
Q psy9448 425 GYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLS 503 (583)
Q Consensus 425 G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~-~~~~~v~~S~~eiy~e~i~DLL~ 503 (583)
|||+||||||||||||||||+|+... .|||||++++||+.++... +..|.|.+||+|||||+|+|||+
T Consensus 86 G~n~~i~ayGqtGSGKTyTm~G~~~~-----------~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~ 154 (338)
T cd01370 86 GYNATVFAYGATGAGKTHTMLGTDSD-----------PGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154 (338)
T ss_pred CCCceEEeeCCCCCCCeEEEcCCCCC-----------CchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCC
Confidence 99999999999999999999997643 3999999999999998765 67899999999999999999999
Q ss_pred CCccccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceee
Q psy9448 504 PTDDITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLIL 579 (583)
Q Consensus 504 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if 579 (583)
+....+++++ +..+.+++.++++..|.++++++++|+.|..+|+++.|. |||||+||
T Consensus 155 ~~~~~l~i~e-------------------d~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~ 215 (338)
T cd01370 155 PSSGPLELRE-------------------DPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVL 215 (338)
T ss_pred CCCCCceEEE-------------------cCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEE
Confidence 8755555554 556777889999999999999999999999998877665 99999999
Q ss_pred eccC
Q psy9448 580 RARL 583 (583)
Q Consensus 580 ~~~~ 583 (583)
+|.+
T Consensus 216 ~i~i 219 (338)
T cd01370 216 QITV 219 (338)
T ss_pred EEEE
Confidence 9864
No 33
>KOG4280|consensus
Probab=100.00 E-value=9.1e-41 Score=357.24 Aligned_cols=201 Identities=35% Similarity=0.560 Sum_probs=165.9
Q ss_pred ccccCCCchHHhhccceeeeecCCC-ceeEEeeecc--cccccccccccccccccccceeehhhhhhhHHHHhcccceeE
Q psy9448 354 INQKMPLNSVERAAKSCSIVDCSSS-REITIKERVN--DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTV 430 (583)
Q Consensus 354 ~~qk~P~~~~E~a~~~~~iV~~~~~-~~~~~~~~~~--~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i 430 (583)
.-+.+|+...+++.....++.+... ..+.+.++.. ...++.|+||+||+++++|++||+.++.|+|++|++|||+||
T Consensus 10 vvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtv 89 (574)
T KOG4280|consen 10 VVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTV 89 (574)
T ss_pred EEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceE
Confidence 5577999998888876666655432 3444544432 446788999999999999999999999999999999999999
Q ss_pred EEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcccc-ceeEEEEeeeeechHhhhhccCCCc-cc
Q psy9448 431 FAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTD-DI 508 (583)
Q Consensus 431 ~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~-~~~~v~~S~~eiy~e~i~DLL~~~~-~~ 508 (583)
||||||||||||||+|+. +...|||||++++||.+|+...+ ..|.|+|||+|||||.|+|||+|.+ ..
T Consensus 90 FaYGQTGsGKTyTM~G~~----------~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~ 159 (574)
T KOG4280|consen 90 FAYGQTGSGKTYTMIGPD----------PELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKG 159 (574)
T ss_pred EEeccCCCCCceEeeCCC----------hhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCC
Confidence 999999999999999982 23479999999999999987653 4799999999999999999999977 35
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 509 TKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 509 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
+.+++ ++...+++.++.+..|.++++++..|..|..+|.++.|. |||||+||+|.|
T Consensus 160 l~lre-------------------~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i 219 (574)
T KOG4280|consen 160 LELRE-------------------DPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHI 219 (574)
T ss_pred ceeeE-------------------cCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEE
Confidence 55555 444555677888888888888888888888888888777 999999999864
No 34
>KOG0240|consensus
Probab=100.00 E-value=5.5e-40 Score=341.98 Aligned_cols=198 Identities=35% Similarity=0.559 Sum_probs=169.2
Q ss_pred cccCCCchHHhhccceeeeecCC-CceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEEe
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSS-SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAY 433 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~-~~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ay 433 (583)
-+.||++..|...+..-++-... ..++.+.. +. ..+.|.||+||.|+++|++||+.++.|+|+++|.|||+|||||
T Consensus 13 cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~--~~-~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaY 89 (607)
T KOG0240|consen 13 CRFRPLNGLENNLGSKFIDCFENGENTVVLET--TK-ETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAY 89 (607)
T ss_pred EEeecCCchhhhcCCcCccCCCCCcceEEEec--cc-ccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEe
Confidence 36789999887776655544444 23333322 22 2389999999999999999999999999999999999999999
Q ss_pred eccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccc-cceeEEEEeeeeechHhhhhccCCCccccccc
Q psy9448 434 GQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512 (583)
Q Consensus 434 GqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~-~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~~ 512 (583)
|||||||||||.|...++ ...|||||++++||.+|.... ..+|.|+|||+|||+|+|+|||+|.+.++.++
T Consensus 90 GqT~sGKTytm~G~~~d~--------~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvh 161 (607)
T KOG0240|consen 90 GQTGSGKTYTMEGIGHDP--------EEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVH 161 (607)
T ss_pred cCCCCCcceeecccCCCh--------hhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceee
Confidence 999999999999976533 335999999999999998754 35899999999999999999999988766554
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeecc
Q psy9448 513 HTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRAR 582 (583)
Q Consensus 513 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~ 582 (583)
+|+++++++.|.++..|..++++++.++.|+.+|++++|. |||||+||+|-
T Consensus 162 -------------------eDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~ 216 (607)
T KOG0240|consen 162 -------------------EDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIH 216 (607)
T ss_pred -------------------cccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEE
Confidence 5788999999999999999999999999999999999988 99999999974
No 35
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=6.8e-40 Score=342.25 Aligned_cols=203 Identities=31% Similarity=0.485 Sum_probs=166.5
Q ss_pred cccCCCchHHhhccceeeeecCCCceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEEee
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYG 434 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG 434 (583)
-+.||++..|.......++...+.+++.+... ..+.|.||+||+++++|++||+.++.|+|+.+++|||+||||||
T Consensus 7 vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~----~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYG 82 (337)
T cd01373 7 VRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH----PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYG 82 (337)
T ss_pred EEcCcCChhhcccCCCeEEEEcCCCcEEeeCC----CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeC
Confidence 36799998887666656666555566555432 25789999999999999999999999999999999999999999
Q ss_pred ccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcc-----ccceeEEEEeeeeechHhhhhccCCCcccc
Q psy9448 435 QTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL-----GDAEFTVRVSFLEIYNEELIDLLSPTDDIT 509 (583)
Q Consensus 435 qtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~-----~~~~~~v~~S~~eiy~e~i~DLL~~~~~~~ 509 (583)
||||||||||+|+...+.. ......|||||++++||..++.. .+..|.|.+||+|||||+|+|||++....+
T Consensus 83 qTGSGKTyTm~G~~~~~~~---~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l 159 (337)
T cd01373 83 QTGSGKTYTMMGPSSSDDE---SPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL 159 (337)
T ss_pred CCCCCceEEecCCCCcccc---ccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc
Confidence 9999999999997654311 12234699999999999988643 345799999999999999999999877666
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 510 KLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 510 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
++++ +..+.+++.++.+..|.+++|++.+|+.|..+|..+.|. |||||+||+|.+
T Consensus 160 ~i~e-------------------~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v 218 (337)
T cd01373 160 KIRE-------------------DIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTI 218 (337)
T ss_pred eEEE-------------------CCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEE
Confidence 6665 445667788999999999999999999998888776654 999999999864
No 36
>KOG0242|consensus
Probab=100.00 E-value=1.3e-39 Score=361.91 Aligned_cols=198 Identities=36% Similarity=0.599 Sum_probs=168.2
Q ss_pred ccCCCchHHhhccceeeeecCCCceeEEeeeccc-c--cccccccccccccccccceeehhhhhhhHHHHhcccceeEEE
Q psy9448 356 QKMPLNSVERAAKSCSIVDCSSSREITIKERVND-K--ISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFA 432 (583)
Q Consensus 356 qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~-~--~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 432 (583)
+-||++..|..++..+.-.+..+..+...-.... . ....|.||+||+++++|++||+..++|+|.++++|+|++|||
T Consensus 13 rvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFA 92 (675)
T KOG0242|consen 13 RVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFA 92 (675)
T ss_pred EeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceee
Confidence 4689988766655555444444444333221111 1 147899999999999999999999999999999999999999
Q ss_pred eeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCccccccc
Q psy9448 433 YGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512 (583)
Q Consensus 433 yGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~~ 512 (583)
||||||||||||.|....| ||||+++.+||+.|....++.|.|.+||+|||||.|+|||+|....+.++
T Consensus 93 YG~TgSGKTyTM~G~~~~P-----------Gii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~ir 161 (675)
T KOG0242|consen 93 YGQTGSGKTYTMSGSEDDP-----------GIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLR 161 (675)
T ss_pred ecCCCCCCceEEeccCCCC-----------CeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEe
Confidence 9999999999999987765 99999999999999998889999999999999999999999988766666
Q ss_pred cchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 513 HTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 513 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
+ |..+..+|.++++..+.+++++.++|..|+.+|+++.|. |||||+||||.+
T Consensus 162 E-------------------D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i 217 (675)
T KOG0242|consen 162 E-------------------DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITV 217 (675)
T ss_pred E-------------------cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEE
Confidence 5 666677889999999999999999999999999988777 999999999864
No 37
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.5e-39 Score=340.55 Aligned_cols=200 Identities=26% Similarity=0.460 Sum_probs=171.9
Q ss_pred cccCCCchHHhhccceeeeecCCCceeEEeeecc----------cccccccccccccccccccceeehhhhhhhHHHHhc
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSSREITIKERVN----------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLS 424 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~----------~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~ 424 (583)
-+.||++..|......+++.+.+..++.+.++.. ...++.|.||+||+++++|++||+.++.|+|+.+++
T Consensus 7 vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~ 86 (345)
T cd01368 7 LRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLK 86 (345)
T ss_pred EEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 3679999998877777778778888888877643 224678999999999999999999999999999999
Q ss_pred ccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCC
Q psy9448 425 GYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSP 504 (583)
Q Consensus 425 G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~ 504 (583)
|+|+||||||||||||||||+|+... .|||||++++||+.+.. |.|.+||+|||||+|+|||++
T Consensus 87 G~n~ti~aYGqtGSGKTyTm~G~~~~-----------~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~ 150 (345)
T cd01368 87 GKNSLLFTYGVTNSGKTYTMQGSPGD-----------GGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLED 150 (345)
T ss_pred CCceEEEEeCCCCCCCeEEecCCCCC-----------CchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCC
Confidence 99999999999999999999997643 39999999999998865 899999999999999999998
Q ss_pred CccccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeee
Q psy9448 505 TDDITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILR 580 (583)
Q Consensus 505 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~ 580 (583)
.+...+ ...++.++++..+.+++.++++..|.+++|++.+|..|..+|..+.|. |||||+||+
T Consensus 151 ~~~~~~-------------~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~ 217 (345)
T cd01368 151 SPSSTK-------------KRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFT 217 (345)
T ss_pred cccccc-------------CCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEE
Confidence 654200 122355666777888899999999999999999999999999877765 999999999
Q ss_pred ccC
Q psy9448 581 ARL 583 (583)
Q Consensus 581 ~~~ 583 (583)
|++
T Consensus 218 i~v 220 (345)
T cd01368 218 IKL 220 (345)
T ss_pred EEE
Confidence 874
No 38
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=4.9e-39 Score=333.92 Aligned_cols=196 Identities=31% Similarity=0.480 Sum_probs=169.6
Q ss_pred ccCCCchHHhhccceeeeecCCCceeEEeeeccc------ccccccccccccccccccceeehhhhhhhHHHHhccccee
Q psy9448 356 QKMPLNSVERAAKSCSIVDCSSSREITIKERVND------KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCT 429 (583)
Q Consensus 356 qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~------~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~ 429 (583)
+-||+.+.|.+.+..+++.+.+.+++++.++... ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+|
T Consensus 8 RvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~ 87 (322)
T cd01367 8 RKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVAT 87 (322)
T ss_pred EcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceE
Confidence 5799999998888888888887778888765321 1257899999999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCcccc
Q psy9448 430 VFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT 509 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~~~~ 509 (583)
|||||||||||||||+|+... .||+||++++||+.++... ..|.|.+||+|||||+++|||++. ..+
T Consensus 88 i~ayGqtGSGKTyTm~G~~~~-----------~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~-~~l 154 (322)
T cd01367 88 CFAYGQTGSGKTYTMLGDENQ-----------EGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLNDR-KRL 154 (322)
T ss_pred EEeccCCCCCCceEecCcCCc-----------CccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccCc-cce
Confidence 999999999999999997644 3999999999999987755 689999999999999999999883 333
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 510 KLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 510 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
++ +++..+.+++.++.+..|.+++|++..|+.|..+|+.+.|. |||||+||+|++
T Consensus 155 ~i-------------------~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v 213 (322)
T cd01367 155 SV-------------------LEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIIL 213 (322)
T ss_pred eE-------------------EEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEE
Confidence 44 44567778888999999999999999999998888877665 999999999975
No 39
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.9e-38 Score=334.16 Aligned_cols=201 Identities=30% Similarity=0.467 Sum_probs=170.3
Q ss_pred cccCCCchHHhhccceeeeecCCCceeEEeeecc----cccccccccccccccc-------cccceeehhhhhhhHHHHh
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSSREITIKERVN----DKISKTFGFDRVFSQE-------SKQVDVYKYVVNPLIDEVL 423 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~----~~~~k~f~fD~vf~~~-------~~q~~vy~~~~~~~v~~~l 423 (583)
-+.||++..|...+...++++.+ +.+.+.++.. ....+.|.||+||+++ ++|++||+.++.|+|+.++
T Consensus 7 vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l 85 (356)
T cd01365 7 VRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAF 85 (356)
T ss_pred EEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 36799999999988888888877 7777777643 3456789999999999 9999999999999999999
Q ss_pred cccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccc--cceeEEEEeeeeechHhhhhc
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG--DAEFTVRVSFLEIYNEELIDL 501 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~--~~~~~v~~S~~eiy~e~i~DL 501 (583)
+|+|+||||||||||||||||+|+... .|||||++++||+.++... ...|.|.+||+|||||+|+||
T Consensus 86 ~G~n~~i~ayGqtGSGKT~Tm~G~~~~-----------~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DL 154 (356)
T cd01365 86 EGYNVCLFAYGQTGSGKSYTMMGYKEE-----------KGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDL 154 (356)
T ss_pred CCCceEEEEecCCCCCCeEEecCCCCC-----------CchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeC
Confidence 999999999999999999999997653 3999999999999987654 368999999999999999999
Q ss_pred cCCCccccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccce
Q psy9448 502 LSPTDDITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHL 577 (583)
Q Consensus 502 L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~ 577 (583)
|++.... ...+.+.++..+.+++.++.+..|.++++++.+|..|...|+.+.|. |||||+
T Consensus 155 L~~~~~~----------------~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~ 218 (356)
T cd01365 155 LNPKKKN----------------KGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHA 218 (356)
T ss_pred CCCCccC----------------CcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceE
Confidence 9987510 11223344556667788999999999999999999999998877665 999999
Q ss_pred eeeccC
Q psy9448 578 ILRARL 583 (583)
Q Consensus 578 if~~~~ 583 (583)
||+|++
T Consensus 219 i~~l~v 224 (356)
T cd01365 219 VFTIVL 224 (356)
T ss_pred EEEEEE
Confidence 999864
No 40
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=353.51 Aligned_cols=201 Identities=30% Similarity=0.487 Sum_probs=161.6
Q ss_pred cccccCCCchHHhhccceeeeecCCCceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEE
Q psy9448 353 EINQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFA 432 (583)
Q Consensus 353 ~~~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 432 (583)
-.-+.||++..|. +.. ++...++..+.+. .+.|.||+||+++++|++||+.++.|+|+.+++|||+||||
T Consensus 102 V~VRVRPl~~~E~--g~~-iV~~~s~dsl~I~-------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFA 171 (1320)
T PLN03188 102 VIVRMKPLNKGEE--GEM-IVQKMSNDSLTIN-------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFA 171 (1320)
T ss_pred EEEEcCCCCCccC--CCe-eEEEcCCCeEEEe-------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeec
Confidence 3457899988764 222 3333344555543 36899999999999999999999999999999999999999
Q ss_pred eeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcc------ccceeEEEEeeeeechHhhhhccCCCc
Q psy9448 433 YGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL------GDAEFTVRVSFLEIYNEELIDLLSPTD 506 (583)
Q Consensus 433 yGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~------~~~~~~v~~S~~eiy~e~i~DLL~~~~ 506 (583)
||||||||||||+|+....... .......|||||++++||..++.. ....|.|+|||+|||||+|+|||+|..
T Consensus 172 YGQTGSGKTYTM~G~~~~~~de-~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~ 250 (1320)
T PLN03188 172 YGQTGSGKTYTMWGPANGLLEE-HLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQ 250 (1320)
T ss_pred CCCCCCCCCEeeCCCCCccccc-ccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccccc
Confidence 9999999999999975422110 012234699999999999998642 345799999999999999999999876
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeecc
Q psy9448 507 DITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRAR 582 (583)
Q Consensus 507 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~ 582 (583)
..+++++ +..+.+++.++++..|.++++++.+|..|..+|+++.|. |||||+||+|.
T Consensus 251 k~L~IRE-------------------D~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~ 311 (1320)
T PLN03188 251 KNLQIRE-------------------DVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCV 311 (1320)
T ss_pred CCceEEE-------------------cCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEE
Confidence 6555554 556677889999999999999999999999999887776 99999999986
Q ss_pred C
Q psy9448 583 L 583 (583)
Q Consensus 583 ~ 583 (583)
|
T Consensus 312 V 312 (1320)
T PLN03188 312 V 312 (1320)
T ss_pred E
Confidence 4
No 41
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=9.9e-38 Score=328.56 Aligned_cols=212 Identities=39% Similarity=0.677 Sum_probs=174.8
Q ss_pred ccccCCCchHHhhccceeeeecCCC-ceeEEeeecc-cccccccccccccccccccceeehhhhhhhHHHHhcccceeEE
Q psy9448 354 INQKMPLNSVERAAKSCSIVDCSSS-REITIKERVN-DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 431 (583)
Q Consensus 354 ~~qk~P~~~~E~a~~~~~iV~~~~~-~~~~~~~~~~-~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ 431 (583)
.-+.||++..|...+...++.+.+. +++.+.++.. ....+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||
T Consensus 7 ~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 86 (352)
T cd01364 7 VVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIF 86 (352)
T ss_pred EEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3467999999988777777777654 7777766432 3356789999999999999999999999999999999999999
Q ss_pred EeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCc---cc
Q psy9448 432 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD---DI 508 (583)
Q Consensus 432 ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~---~~ 508 (583)
|||||||||||||+|.........+...+..|||||++++||+.+... +..|.|.+||+|||||+|+|||++.. ..
T Consensus 87 ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~ 165 (352)
T cd01364 87 AYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSESDLNKP 165 (352)
T ss_pred ECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCccccCcc
Confidence 999999999999999865533223334456799999999999998875 66899999999999999999999863 33
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 509 TKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 509 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
+++++++ ...+.+++.++.+..+.++++++++|+.|..+|..+.+. |||||+||+|++
T Consensus 166 l~i~e~~-----------------~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i 227 (352)
T cd01364 166 LRIFDDT-----------------NNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITI 227 (352)
T ss_pred ceEEecc-----------------CcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEE
Confidence 4444421 146778899999999999999999999998888776655 999999999864
No 42
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=9.2e-38 Score=324.17 Aligned_cols=196 Identities=29% Similarity=0.470 Sum_probs=162.4
Q ss_pred cccCCCchHHhhccceeeeecCCC-----ceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhccccee
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSS-----REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCT 429 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~-----~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~ 429 (583)
-+.||+.+.|.... .++...+. ..+.+.++.+....+.|.||+||+++++|++||+.++.|+|+.+++|+|+|
T Consensus 6 vRvRP~~~~e~~~~--~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~ 83 (319)
T cd01376 6 VRVRPFLDCEEDSS--SCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNAT 83 (319)
T ss_pred EEeCcCCccccCCC--ceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceE
Confidence 35789988774332 23333222 577777776666678999999999999999999999999999999999999
Q ss_pred EEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCcccc
Q psy9448 430 VFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT 509 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~~~~ 509 (583)
|||||||||||||||+|.... .|||||++++||+.++.. ...+.|.+||+|||||+|+|||++....+
T Consensus 84 i~ayG~tgSGKTyTm~G~~~~-----------~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~l 151 (319)
T cd01376 84 VFAYGSTGAGKTHTMLGDPNE-----------PGLIPRTLSDLLRMGRKQ-AWTGAFSMSYYEIYNEKVYDLLEPAKKEL 151 (319)
T ss_pred EEEECCCCCCCcEEEeCCcCc-----------cchHHHHHHHHHHHHhhc-cccceEEEEEEEEECCEeeEccCCCCCCc
Confidence 999999999999999997653 399999999999987664 36899999999999999999999876555
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 510 KLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 510 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
++++ ++.+.+++.++.+..+.++++++.++..|..+|+.+.+. |||||+||+|.+
T Consensus 152 ~i~~-------------------~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v 210 (319)
T cd01376 152 PIRE-------------------DKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKV 210 (319)
T ss_pred eEEE-------------------cCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEE
Confidence 5554 456677788888899999999988888888777766654 999999999864
No 43
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.8e-37 Score=323.24 Aligned_cols=199 Identities=36% Similarity=0.602 Sum_probs=172.1
Q ss_pred cccCCCchHHhhccceeeeecCCCceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEEee
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYG 434 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG 434 (583)
-+.||+++.|..++..+++.+.+++++.+.++ ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||
T Consensus 8 vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG 84 (325)
T cd01369 8 CRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS---DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYG 84 (325)
T ss_pred EEcCcCChhhhccCCceEEEEcCCCEEEecCC---CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeC
Confidence 36799999998888888888888888888765 345789999999999999999999999999999999999999999
Q ss_pred ccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccc-cceeEEEEeeeeechHhhhhccCCCcccccccc
Q psy9448 435 QTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRH 513 (583)
Q Consensus 435 qtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~-~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~~~ 513 (583)
||||||||||+|+...+ ...||+||++++||+++.... ..+|.|.+||+|||||+++|||++....+++++
T Consensus 85 ~tgSGKT~Tm~G~~~~~--------~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 156 (325)
T cd01369 85 QTGSGKTYTMEGPPGDP--------ELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHE 156 (325)
T ss_pred CCCCCceEEecCCCCcc--------ccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEE
Confidence 99999999999986532 235999999999999997653 457999999999999999999998766555554
Q ss_pred chhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 514 TSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 514 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
++.+.+++.++.+..+.++++++.+|+.|..+|+.+.+. |||||+||+|++
T Consensus 157 -------------------~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v 211 (325)
T cd01369 157 -------------------DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITL 211 (325)
T ss_pred -------------------cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEE
Confidence 556677788888999999999999999998888876664 999999999974
No 44
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.2e-37 Score=323.80 Aligned_cols=195 Identities=33% Similarity=0.570 Sum_probs=166.5
Q ss_pred cccCCCchHHhhccceeeeecCCCceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEEee
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYG 434 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG 434 (583)
-+.||++..|.. +..+++.+.+++++.+.++ ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||
T Consensus 6 vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~---~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG 81 (321)
T cd01374 6 VRVRPLNPRESD-NEQVAWSIDNDNTISLEES---TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYG 81 (321)
T ss_pred EEcCcCCccccc-CCcceEEECCCCEEEEcCC---CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeec
Confidence 367899887763 3445666666667777654 346899999999999999999999999999999999999999999
Q ss_pred ccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCccccccccc
Q psy9448 435 QTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHT 514 (583)
Q Consensus 435 qtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~~~~ 514 (583)
||||||||||+|+... .|||||++++||+.+....+..|.|.+||+|||||+|+|||+|....+++++
T Consensus 82 ~tgSGKT~T~~G~~~~-----------~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~- 149 (321)
T cd01374 82 QTSSGKTFTMSGDEQE-----------PGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIRE- 149 (321)
T ss_pred CCCCCCceeccCCCCC-----------CchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEE-
Confidence 9999999999997643 3999999999999998877889999999999999999999999876566555
Q ss_pred hhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 515 SEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 515 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
+..+.+++.++.+..+.++++++.+|+.|..+|+.+.+. |||||+||+|++
T Consensus 150 ------------------~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v 204 (321)
T cd01374 150 ------------------DPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTI 204 (321)
T ss_pred ------------------CCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEE
Confidence 455566788888889999999999999988888876555 999999999974
No 45
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.7e-37 Score=324.07 Aligned_cols=202 Identities=34% Similarity=0.527 Sum_probs=169.3
Q ss_pred cccCCCchHHhhccceeeeecC-CCceeEEeeecc--cccccccccccccccccccceeehhhhhhhHHHHhcccceeEE
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCS-SSREITIKERVN--DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVF 431 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~-~~~~~~~~~~~~--~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ 431 (583)
-+.||++..|...+..+++... +...+.+.++.. ....+.|.||+||+++++|++||+..+.|+|+.+++|+|+|||
T Consensus 7 vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 86 (333)
T cd01371 7 VRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIF 86 (333)
T ss_pred EEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEE
Confidence 3679999999888777676653 456677766543 2456899999999999999999999999999999999999999
Q ss_pred EeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCc-cccc
Q psy9448 432 AYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD-DITK 510 (583)
Q Consensus 432 ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~-~~~~ 510 (583)
|||||||||||||+|....+ ...|||||++++||+.++...+..|.|.+||+|||||+|+|||++.. ..++
T Consensus 87 ayG~tgSGKTyTm~G~~~~~--------~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~ 158 (333)
T cd01371 87 AYGQTGTGKTFTMEGVREPP--------ELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLE 158 (333)
T ss_pred ecCCCCCCCcEeecCCCCcc--------cccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCcee
Confidence 99999999999999976422 23599999999999999887778999999999999999999998765 2333
Q ss_pred cccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 511 LRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 511 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
++ +++.+.+++.++.+..+.+++++..+|+.|..+|..+.+. |||||+||+|++
T Consensus 159 i~-------------------~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v 216 (333)
T cd01371 159 LK-------------------ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITI 216 (333)
T ss_pred EE-------------------EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEE
Confidence 43 4556667778888889999999999999888888766655 999999999974
No 46
>KOG0246|consensus
Probab=100.00 E-value=2.9e-37 Score=320.49 Aligned_cols=205 Identities=27% Similarity=0.420 Sum_probs=178.3
Q ss_pred cccccCCCchHHhhccceeeeecCCCceeEEeeecc-c-----ccccccccccccccccccceeehhhhhhhHHHHhccc
Q psy9448 353 EINQKMPLNSVERAAKSCSIVDCSSSREITIKERVN-D-----KISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY 426 (583)
Q Consensus 353 ~~~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~-~-----~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~ 426 (583)
-+.+|||++.+|.+.+..++|++.+...+++.+|.. . .....|.||++||+.+++++||..+++|+|+.+|+|-
T Consensus 212 VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G 291 (676)
T KOG0246|consen 212 VCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTIFEGG 291 (676)
T ss_pred EEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHHHhCC
Confidence 466899999999999999999998888888877532 1 1235899999999999999999999999999999999
Q ss_pred ceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcc--ccceeEEEEeeeeechHhhhhccCC
Q psy9448 427 NCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSP 504 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~--~~~~~~v~~S~~eiy~e~i~DLL~~ 504 (583)
-+|+||||||||||||||.|+..... .+...||.-++.+++|..++.. ...++.|.+||||||+.++||||++
T Consensus 292 ~ATCFAYGQTGSGKT~TMggdfsgk~-----q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 292 MATCFAYGQTGSGKTYTMGGDFSGKA-----QDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred ceeeeeeccCCCCceeecccccCccc-----ccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 99999999999999999999865542 2345699999999999988763 4568999999999999999999987
Q ss_pred CccccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeee
Q psy9448 505 TDDITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILR 580 (583)
Q Consensus 505 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~ 580 (583)
.. .++..+|.+....++|+.+..|...++++++|++|++-|+++.|. |||||+|||
T Consensus 367 k~--------------------KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQ 426 (676)
T KOG0246|consen 367 KK--------------------KLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQ 426 (676)
T ss_pred cc--------------------ceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEe
Confidence 32 233456888899999999999999999999999999999887666 999999999
Q ss_pred cc
Q psy9448 581 AR 582 (583)
Q Consensus 581 ~~ 582 (583)
|=
T Consensus 427 Ii 428 (676)
T KOG0246|consen 427 II 428 (676)
T ss_pred ee
Confidence 83
No 47
>KOG0239|consensus
Probab=100.00 E-value=1.9e-36 Score=335.26 Aligned_cols=274 Identities=27% Similarity=0.407 Sum_probs=199.4
Q ss_pred hhhhhhHHHHHhhhCCCCCcchhhHhHHhhhhcCCcceeeEEEEeCccccchhhhhhhhhhhhhhccCCCchhhhhhhhH
Q psy9448 242 LLTLGRCITALVEKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSK 321 (583)
Q Consensus 242 L~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~r~k~i~n~~~~n~~~~~ 321 (583)
+..|.+.+..|.....++++.-+.+++-+++++...... +.-|. . . .
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------~~~L~--~----------~-----~ 289 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL----------------QSDLE--S----------L-----E 289 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH--H----------H-----H
Confidence 678888888888888889999999999998887643211 00000 0 0 0
Q ss_pred HHHHHHH-HHHHHHhhhhhhhHhhhccCCCCccccccCCCchHHhhccceeeeecCCCceeEEeeeccccc--ccccccc
Q psy9448 322 KALLRVT-SINMEETLSTLDYAHRAKNITNRPEINQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKI--SKTFGFD 398 (583)
Q Consensus 322 ~~~~~~~-~~e~~~~l~~~~~~~~~~~~~~~~~~~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~~~~--~k~f~fD 398 (583)
..+...+ +++..+.|+.++...+ ++ .-..-+.||+.+.|.......+++.....++.+..+..... .+.|.||
T Consensus 290 ~~l~~~~~e~~~r~kL~N~i~eLk---Gn-IRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd 365 (670)
T KOG0239|consen 290 ENLVEKKKEKEERRKLHNEILELK---GN-IRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFD 365 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---cC-ceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceee
Confidence 0111111 1111111333332222 32 23344679998877765444444443333455554433221 2359999
Q ss_pred cccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeecc-ccCCCCcccccCCCCccchhhhhhhhHHhh
Q psy9448 399 RVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE-KSNDPSISWQDDPLSGIVPRAMNHLFDELR 477 (583)
Q Consensus 399 ~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~-~~~~~~~~~~~~~~~Giipr~~~~lf~~~~ 477 (583)
+||+|.++|++||..+ .|+|+++|+|||+||||||||||||||||.|+ .+. +|||||++++||..+.
T Consensus 366 kVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~-----------~Giipral~~lF~~~~ 433 (670)
T KOG0239|consen 366 KVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPED-----------PGIIPRALEKLFRTIT 433 (670)
T ss_pred eecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCCCccc-----------CCccHHHHHHHHHHHH
Confidence 9999999999999995 99999999999999999999999999999995 322 4999999999999887
Q ss_pred cc-ccceeEEEEeeeeechHhhhhccCCCc--cccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhh
Q psy9448 478 LL-GDAEFTVRVSFLEIYNEELIDLLSPTD--DITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAE 554 (583)
Q Consensus 478 ~~-~~~~~~v~~S~~eiy~e~i~DLL~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~ 554 (583)
.. .+|.|.+.+||+|||||.|+|||++.. .... ++.+.++...+++++...|.+.+++
T Consensus 434 ~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~-------------------I~~~~~~~~~V~~~t~~~V~s~~~v 494 (670)
T KOG0239|consen 434 SLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLE-------------------IVDDAEGNLMVPLLTVIKVGSSEEV 494 (670)
T ss_pred hhccCceEEeeeehhHHHHHHHHHhcccccccccee-------------------EEEcCCCceecccceEEecCCHHHH
Confidence 64 379999999999999999999998864 3333 4445666678899999999999999
Q ss_pred hhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 555 VTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 555 ~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
..+++.|..+|+++.|. |||||+||+|++
T Consensus 495 ~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v 527 (670)
T KOG0239|consen 495 DILLEIGLSNRSVASTASNERSSRSHLVFRVRI 527 (670)
T ss_pred HHHHHHhhccccccccccchhhhccceEEEEEE
Confidence 99999999999998888 999999999975
No 48
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.6e-36 Score=316.71 Aligned_cols=202 Identities=29% Similarity=0.451 Sum_probs=161.9
Q ss_pred ccCCCchHHhhccceeeeecCCCceeEEeeecc--------cccccccccccccccccccceeehhhhhhhHHHHhcccc
Q psy9448 356 QKMPLNSVERAAKSCSIVDCSSSREITIKERVN--------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYN 427 (583)
Q Consensus 356 qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~--------~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n 427 (583)
+.||+...+.. ++.-..++..+++..|.. ....+.|.||+||++ ++|++||+.++.|+|+.+++|+|
T Consensus 7 RvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n 81 (334)
T cd01375 7 RVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYN 81 (334)
T ss_pred ECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCc
Confidence 56788763321 222223455555555432 234568999999999 99999999999999999999999
Q ss_pred eeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCcc
Q psy9448 428 CTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDD 507 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~~ 507 (583)
+||||||||||||||||+|+.... ...|||||++++||++++...+..|.|.+||+|||||+++|||++...
T Consensus 82 ~~i~ayG~tgSGKTyTm~G~~~~~--------~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~ 153 (334)
T cd01375 82 GTIFAYGQTGAGKTFTMTGGTESY--------KDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPE 153 (334)
T ss_pred cceeeecCCCCCCeEEccCCCCcc--------cCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCcc
Confidence 999999999999999999975421 235999999999999999888889999999999999999999998753
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 508 ITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 508 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
.. +..+.+.+.++..+.+++.++++..+.+++|++.++..|+.+|+.+.+. |||||+||+|+|
T Consensus 154 ~~-------------~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v 220 (334)
T cd01375 154 AL-------------ESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHL 220 (334)
T ss_pred cc-------------ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEE
Confidence 20 0112234556667788889999999999999999999999999877665 999999999975
No 49
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.7e-36 Score=318.00 Aligned_cols=199 Identities=34% Similarity=0.560 Sum_probs=162.8
Q ss_pred cccCCCchHHhhccceeeeecCCC-ceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEEe
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSS-REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAY 433 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~-~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ay 433 (583)
-+.||++..|...+...++.+... ..+.+.+ .+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||||
T Consensus 7 vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ay 80 (341)
T cd01372 7 VRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAY 80 (341)
T ss_pred EECCCCCchhcccCCCeEEEEeCCCCEEEecC------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeee
Confidence 367899988876665555544332 3333322 578999999999999999999999999999999999999999
Q ss_pred eccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcccc-ceeEEEEeeeeechHhhhhccCCCc---ccc
Q psy9448 434 GQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTD---DIT 509 (583)
Q Consensus 434 GqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~-~~~~v~~S~~eiy~e~i~DLL~~~~---~~~ 509 (583)
|||||||||||+|+.... ......|||||++++||+.++.... .+|.|.+||+|||||+++|||++.. ..+
T Consensus 81 G~tgSGKT~Tm~G~~~~~-----~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l 155 (341)
T cd01372 81 GQTGSGKTYTMGTAFTAS-----EDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPI 155 (341)
T ss_pred cCCCCCCcEEecCCCccc-----cccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCc
Confidence 999999999999975431 1233469999999999999987655 6899999999999999999999864 333
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 510 KLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 510 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
++ +++..+.+++.++.+..|.++++++..|..|..+|+.+.+. |||||+||+|++
T Consensus 156 ~i-------------------~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v 214 (341)
T cd01372 156 QI-------------------REDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITL 214 (341)
T ss_pred eE-------------------EECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEE
Confidence 44 44666777788888888999999999999888888777665 999999999875
No 50
>KOG0241|consensus
Probab=100.00 E-value=3.9e-36 Score=322.90 Aligned_cols=198 Identities=28% Similarity=0.441 Sum_probs=168.3
Q ss_pred ccccCCCchHHhhccceeeeecCCCceeEEeeecc-----cccccccccccccccc-------cccceeehhhhhhhHHH
Q psy9448 354 INQKMPLNSVERAAKSCSIVDCSSSREITIKERVN-----DKISKTFGFDRVFSQE-------SKQVDVYKYVVNPLIDE 421 (583)
Q Consensus 354 ~~qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~-----~~~~k~f~fD~vf~~~-------~~q~~vy~~~~~~~v~~ 421 (583)
.-+.||++.+|......++|++...+++...+|.+ ...+|+|.||++|.+. +.|+.||+.++..+++.
T Consensus 9 aVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~n 88 (1714)
T KOG0241|consen 9 AVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILEN 88 (1714)
T ss_pred EEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHHHH
Confidence 44679999999999999999998887766555433 1346899999999763 57999999999999999
Q ss_pred HhcccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcc--ccceeEEEEeeeeechHhhh
Q psy9448 422 VLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELI 499 (583)
Q Consensus 422 ~l~G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~--~~~~~~v~~S~~eiy~e~i~ 499 (583)
+|+|||+||||||||||||||||+|..+++ |||||.++.||.+|... +...|.|.|||+|||||+++
T Consensus 89 af~GyNaCifaYGQtGsGKsYsmmGt~~Qp-----------GiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~ 157 (1714)
T KOG0241|consen 89 AFQGYNACIFAYGQTGSGKSYSMMGTAEQP-----------GIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVR 157 (1714)
T ss_pred HhhccceeeEEecccCCCceeEeeccCCCC-----------CchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchh
Confidence 999999999999999999999999998876 99999999999999764 44589999999999999999
Q ss_pred hccCCCc--cccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CC
Q psy9448 500 DLLSPTD--DITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PP 573 (583)
Q Consensus 500 DLL~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SS 573 (583)
|||.|.. +.+++++++- -.+++.|+-.-.|.++++.-+++..|+++|+++.+. ||
T Consensus 158 DLLdPk~ssqtlkVrehsv-------------------lGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~Ess 218 (1714)
T KOG0241|consen 158 DLLDPKGSSQTLKVREHSV-------------------LGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESS 218 (1714)
T ss_pred hhhCCCCCcceeEEeeccc-------------------ccccccchhhhhcccHHHHHHHHHhccccceeeeeccccccc
Confidence 9999864 4455665444 444556666677788888888999999999999888 99
Q ss_pred ccceeeec
Q psy9448 574 TKHLILRA 581 (583)
Q Consensus 574 RsH~if~~ 581 (583)
|||++|-|
T Consensus 219 rsHaVFsl 226 (1714)
T KOG0241|consen 219 RSHAVFSL 226 (1714)
T ss_pred ccceeEEE
Confidence 99999976
No 51
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=8.3e-35 Score=303.85 Aligned_cols=195 Identities=32% Similarity=0.555 Sum_probs=160.3
Q ss_pred cccCCCchHHhhccceeeeecCCC--ceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEE
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSS--REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFA 432 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~--~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 432 (583)
-+.+|+...|. ....+++.+.+. +++.+.+. ....+.|.||+||+++++|++||+. +.|+|+.+++|+|+||||
T Consensus 8 vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~a 83 (329)
T cd01366 8 CRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFA 83 (329)
T ss_pred EEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEE
Confidence 35688887766 333445555554 66666543 2456789999999999999999998 599999999999999999
Q ss_pred eeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccc--cceeEEEEeeeeechHhhhhccCCC---cc
Q psy9448 433 YGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPT---DD 507 (583)
Q Consensus 433 yGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~--~~~~~v~~S~~eiy~e~i~DLL~~~---~~ 507 (583)
||+|||||||||+|.... .||+||++++||+.++... +..|.|.+||+|||||+++|||++. ..
T Consensus 84 yG~tgSGKT~tl~G~~~~-----------~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 152 (329)
T cd01366 84 YGQTGSGKTYTMEGPPEN-----------PGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKK 152 (329)
T ss_pred eCCCCCCCcEEecCCCCC-----------CCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCC
Confidence 999999999999998644 3999999999999997764 4789999999999999999999986 34
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 508 ITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 508 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
.+++++ +..+.+++.++.+..+.+++|+..++..|...|..+.+. |||||+||+|++
T Consensus 153 ~l~i~~-------------------~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v 213 (329)
T cd01366 153 KLEIKH-------------------DSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKI 213 (329)
T ss_pred ceEEEE-------------------CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEE
Confidence 445554 455677788888888999999999998888888776655 999999999874
No 52
>KOG0247|consensus
Probab=100.00 E-value=9.3e-35 Score=310.00 Aligned_cols=201 Identities=27% Similarity=0.465 Sum_probs=168.5
Q ss_pred ccCCCchHHhhccceeeeecCCCceeEEeeecc---------cccccccccccccccccccceeehhhhhhhHHHHhccc
Q psy9448 356 QKMPLNSVERAAKSCSIVDCSSSREITIKERVN---------DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGY 426 (583)
Q Consensus 356 qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~---------~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~ 426 (583)
+-+|+.+ ......++.+.+..++.+..|.. ..+.+.|.|.+||+|+++|.+||+.++.|+|.+++.|.
T Consensus 38 rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgq 114 (809)
T KOG0247|consen 38 RVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQ 114 (809)
T ss_pred eecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHHHHHHccc
Confidence 4678876 23334455556777787774432 34567899999999999999999999999999999999
Q ss_pred ceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhh-----------------------------
Q psy9448 427 NCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR----------------------------- 477 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~----------------------------- 477 (583)
|.-+|.||.|||||||||.|+...+ ||+||+++-||..|.
T Consensus 115 n~LlFTyGVTgSGKTYTm~G~~~~~-----------GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 115 NSLLFTYGVTGSGKTYTMTGTPDRP-----------GILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred ceeEEEeeccCCCceEEeecCCCCC-----------CchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 9999999999999999999987654 999999999996443
Q ss_pred ------------------------------c------cccceeEEEEeeeeechHhhhhccCCCccccccccchhhHHHH
Q psy9448 478 ------------------------------L------LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEI 521 (583)
Q Consensus 478 ------------------------------~------~~~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~~~~~~~~~~i 521 (583)
+ ..+..|+|+|||+|||||.|||||.+.....+
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~----------- 252 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGK----------- 252 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccch-----------
Confidence 0 02346899999999999999999998754422
Q ss_pred HHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 522 EKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
+++...+++|.++..++.|++++.|.+.+||+++++.|+..|+.++|. |||||+||.|||
T Consensus 253 --~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl 316 (809)
T KOG0247|consen 253 --LQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKL 316 (809)
T ss_pred --hhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEe
Confidence 223356788999999999999999999999999999999999999988 999999999986
No 53
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=9.2e-36 Score=312.15 Aligned_cols=201 Identities=37% Similarity=0.601 Sum_probs=156.3
Q ss_pred ccCCCchHHhhccceeeeecCCC---ceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEE
Q psy9448 356 QKMPLNSVERAAKSCSIVDCSSS---REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFA 432 (583)
Q Consensus 356 qk~P~~~~E~a~~~~~iV~~~~~---~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 432 (583)
+.||++..|.......++.+... ..............+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 35899999988877766654321 111122222334467899999999999999999999999999999999999999
Q ss_pred eeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhcccc---ceeEEEEeeeeechHhhhhccCCCc---
Q psy9448 433 YGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGD---AEFTVRVSFLEIYNEELIDLLSPTD--- 506 (583)
Q Consensus 433 yGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~---~~~~v~~S~~eiy~e~i~DLL~~~~--- 506 (583)
||+|||||||||+|+.. ....||+||++++||+.++.... ..|.|.+||+|||||+|+|||++..
T Consensus 81 yG~tgSGKT~Tm~G~~~---------~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 151 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSND---------PSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKS 151 (335)
T ss_dssp EESTTSSHHHHHTBSTS---------TTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSST
T ss_pred ecccccccccccccccc---------ccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccccc
Confidence 99999999999999811 12249999999999999987654 5899999999999999999999873
Q ss_pred -cccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeec
Q psy9448 507 -DITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRA 581 (583)
Q Consensus 507 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~ 581 (583)
..+++++++.. +.+.+.++.+..+.+++++...|..|..+|+.+.+. |||||+||+|
T Consensus 152 ~~~l~i~~~~~~------------------g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i 213 (335)
T PF00225_consen 152 RKPLKIREDSNK------------------GSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTI 213 (335)
T ss_dssp TSEBEEEEETTT------------------EEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEE
T ss_pred ccccceeecccc------------------ccceeeccccccccccccccccccchhhcccccccccccccccccccccc
Confidence 34566653321 236677777777788888888887777777666655 9999999998
Q ss_pred cC
Q psy9448 582 RL 583 (583)
Q Consensus 582 ~~ 583 (583)
++
T Consensus 214 ~v 215 (335)
T PF00225_consen 214 HV 215 (335)
T ss_dssp EE
T ss_pred cc
Confidence 74
No 54
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.3e-34 Score=303.23 Aligned_cols=199 Identities=36% Similarity=0.610 Sum_probs=168.0
Q ss_pred cccCCCchHHhhccceeeeecCCC--ceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEE
Q psy9448 355 NQKMPLNSVERAAKSCSIVDCSSS--REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFA 432 (583)
Q Consensus 355 ~qk~P~~~~E~a~~~~~iV~~~~~--~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 432 (583)
-+.||++..|...+..+++.+.+. +++.+.++......+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||
T Consensus 6 vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~ 85 (335)
T smart00129 6 VRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFA 85 (335)
T ss_pred EEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEE
Confidence 367899988887766666666544 577777766666778999999999999999999999999999999999999999
Q ss_pred eeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccc-cceeEEEEeeeeechHhhhhccCCCcccccc
Q psy9448 433 YGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKL 511 (583)
Q Consensus 433 yGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~-~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~ 511 (583)
||++||||||||+|+... .||+||++++||+.+.... +..|.|.+||+|||+|+++|||++.+..+++
T Consensus 86 yG~tgSGKT~tl~G~~~~-----------~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i 154 (335)
T smart00129 86 YGQTGSGKTYTMSGTPDS-----------PGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEI 154 (335)
T ss_pred eCCCCCCCceEecCCCCC-----------CCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEE
Confidence 999999999999997543 3999999999999997654 5689999999999999999999987766666
Q ss_pred ccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 512 RHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 512 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
++ +..+.+++.+..+..+.++++++.++..+...|+.+.+. |||||+||+|++
T Consensus 155 ~~-------------------~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v 211 (335)
T smart00129 155 RE-------------------DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITV 211 (335)
T ss_pred EE-------------------CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEE
Confidence 65 445566778888888888889888888887777766554 999999999874
No 55
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.6e-34 Score=300.24 Aligned_cols=197 Identities=35% Similarity=0.568 Sum_probs=165.0
Q ss_pred ccCCCchHHhhccceeeeecCCCceeEEeeecc--cccccccccccccccccccceeehhhhhhhHHHHhcccceeEEEe
Q psy9448 356 QKMPLNSVERAAKSCSIVDCSSSREITIKERVN--DKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAY 433 (583)
Q Consensus 356 qk~P~~~~E~a~~~~~iV~~~~~~~~~~~~~~~--~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ay 433 (583)
+.||+...| ......++.+.+.+++.+.++.. ....+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||||
T Consensus 7 RvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~y 85 (328)
T cd00106 7 RIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAY 85 (328)
T ss_pred EcCCCCccc-ccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEe
Confidence 567877665 33455677777768888877643 234689999999999999999999999999999999999999999
Q ss_pred eccCCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccc--cceeEEEEeeeeechHhhhhccCCC--cccc
Q psy9448 434 GQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPT--DDIT 509 (583)
Q Consensus 434 GqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~--~~~~~v~~S~~eiy~e~i~DLL~~~--~~~~ 509 (583)
|++||||||||+|+... .|||||++++||+.+.... ...+.|.+||+|||+|+|+|||++. ...+
T Consensus 86 G~tgSGKT~tl~G~~~~-----------~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l 154 (328)
T cd00106 86 GQTGSGKTYTMFGSPKD-----------PGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPL 154 (328)
T ss_pred cCCCCCCeEEecCCCCC-----------CchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCc
Confidence 99999999999997644 3999999999999998765 4689999999999999999999997 5555
Q ss_pred ccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeeccC
Q psy9448 510 KLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRARL 583 (583)
Q Consensus 510 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~~ 583 (583)
++++ +..+.+.+.++.+..+.++++++..+..+..+|+.+.+. |||||+||+|++
T Consensus 155 ~i~~-------------------~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v 213 (328)
T cd00106 155 SLRE-------------------DPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHV 213 (328)
T ss_pred EEEE-------------------cCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEE
Confidence 5554 455666788888888889999998888888887766554 999999999874
No 56
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.95 E-value=1.2e-29 Score=280.04 Aligned_cols=161 Identities=38% Similarity=0.656 Sum_probs=144.9
Q ss_pred ccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhh
Q psy9448 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 471 (583)
Q Consensus 392 ~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 471 (583)
...|.||+||++.++|++||+..+.|+++.++.||||||||||||||||||||.|....+ ||||+++.+
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~-----------Gii~~~l~~ 123 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEP-----------GIIPLSLKE 123 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCcccc-----------chHHHHHHH
Confidence 356999999999999999999999999999999999999999999999999999987443 999999999
Q ss_pred hhHHhhccc-cceeEEEEeeeeechHhhhhccCCCccccccccchhhHHHHHHHHHHHHHHHhhcceEEeecchHHHHHH
Q psy9448 472 LFDELRLLG-DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNE 550 (583)
Q Consensus 472 lf~~~~~~~-~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 550 (583)
||+.++... +.++.|.+||+|||||+++|||.+.... +.+.++..+...+.++....+.+
T Consensus 124 lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~-------------------~~~~~~~~~~v~v~~l~~~~~~s 184 (568)
T COG5059 124 LFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES-------------------LNIREDSLLGVKVAGLTEKHVSS 184 (568)
T ss_pred HHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc-------------------ccccccCCCceEeecceEEecCC
Confidence 999987654 4579999999999999999999987643 44566777888889999999999
Q ss_pred HHhhhhceeccCCCCCcccCC----CCccceeeecc
Q psy9448 551 LYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRAR 582 (583)
Q Consensus 551 ~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~ 582 (583)
.++.+..|.+|..+|+.+.+. |||||+||++.
T Consensus 185 ~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~ 220 (568)
T COG5059 185 KEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIE 220 (568)
T ss_pred hHHHHHHHHHhhhhcccccchhccccccceEEEEEE
Confidence 999999999999999888877 99999999985
No 57
>KOG0244|consensus
Probab=99.95 E-value=4.5e-29 Score=274.24 Aligned_cols=194 Identities=30% Similarity=0.519 Sum_probs=163.0
Q ss_pred CCCchHHhhccceeeeecC-CCceeEEeeecccccccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeecc
Q psy9448 358 MPLNSVERAAKSCSIVDCS-SSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQT 436 (583)
Q Consensus 358 ~P~~~~E~a~~~~~iV~~~-~~~~~~~~~~~~~~~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqt 436 (583)
||+..+|...+...++.+. ...++++ ...+.|+||+||+....|.++|+.+|.|+++.+|.|||+|++|||||
T Consensus 2 Rpl~~~e~~~g~~~c~~~~~~~pqv~i------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQt 75 (913)
T KOG0244|consen 2 RPLKQMEEEQGCRRCTEVSPRTPQVAI------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQT 75 (913)
T ss_pred CCccchHHHhcchhhcccCCCCCceee------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeeccc
Confidence 7898888888877777633 3333333 23478999999999999999999999999999999999999999999
Q ss_pred CCCceEEeeccccCCCCcccccCCCCccchhhhhhhhHHhhccccceeEEEEeeeeechHhhhhccCCCccccccccchh
Q psy9448 437 GTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSE 516 (583)
Q Consensus 437 gsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~~~~~~ 516 (583)
||||||||.+...... + ..|+|||+++++|..+.......|.|.|||+|||+|.|+|||.|.....
T Consensus 76 gsgkTytmgt~~~~~~-----~--~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~------- 141 (913)
T KOG0244|consen 76 GSGKTYTMGTNDAPAQ-----D--TVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKA------- 141 (913)
T ss_pred CCCceeeccccccccc-----c--cCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhh-------
Confidence 9999999977643321 1 1599999999999999887778899999999999999999999654321
Q ss_pred hHHHHHHHHHHHHHHHhhcceEEeecchHHHHHHHHhhhhceeccCCCCCcccCC----CCccceeeecc
Q psy9448 517 YTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAAEDQ----PPTKHLILRAR 582 (583)
Q Consensus 517 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~r~~~~~~----SSRsH~if~~~ 582 (583)
++.+.+ ..+...+.++++..+....+..+.|.+|...|++++|. |||||+||+|-
T Consensus 142 ----------~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~ 200 (913)
T KOG0244|consen 142 ----------NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTIT 200 (913)
T ss_pred ----------ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHH
Confidence 133444 66778899999999999999999999999999998887 99999999873
No 58
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.73 E-value=2.3e-18 Score=165.23 Aligned_cols=50 Identities=52% Similarity=1.036 Sum_probs=46.3
Q ss_pred eehhhhhhhHHHHhcccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhh
Q psy9448 410 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 471 (583)
Q Consensus 410 vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~ 471 (583)
||+.++ |+|+.+++|+|+||||||||||||||||+|+... .||+||++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~-----------~Giip~~~~~ 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREG-----------AGIIPRTVTD 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCC-----------CCcchHHHHH
Confidence 999998 9999999999999999999999999999997633 4999999887
No 59
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.56 E-value=0.061 Score=58.22 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=56.6
Q ss_pred eeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccch----hhh
Q psy9448 15 VSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVP----RAM 90 (583)
Q Consensus 15 ~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giip----r~~ 90 (583)
.+.+-.-|.|.-+|- ..++.||+.+-+|.-.-+ -.|.|||||||||-.-=.. .+. +-||- -..
T Consensus 4 ~F~l~s~f~PaGDQP----~AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~------~~r--PtLV~AhNKTLA 70 (663)
T COG0556 4 PFKLHSPFKPAGDQP----EAIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAK------VQR--PTLVLAHNKTLA 70 (663)
T ss_pred ceEeccCCCCCCCcH----HHHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHH------hCC--CeEEEecchhHH
Confidence 344445667766664 345667777766655444 4699999999999542100 001 11211 234
Q ss_pred hHHHHHHhh-ccceeEEEEEeehhhchHHh
Q psy9448 91 NHLFDELRL-LGDAEFTVRVSFLEIYNEEL 119 (583)
Q Consensus 91 ~~lf~~~~~-~~~~~~~v~vS~~EIyne~v 119 (583)
.+||...+. .++..+...|||+..|.-+-
T Consensus 71 aQLy~Efk~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 71 AQLYSEFKEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred HHHHHHHHHhCcCcceEEEeeeccccCccc
Confidence 578877776 36667778999999985443
No 60
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.48 E-value=0.065 Score=58.03 Aligned_cols=136 Identities=22% Similarity=0.343 Sum_probs=76.5
Q ss_pred cccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhhhh
Q psy9448 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 472 (583)
Q Consensus 393 k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~l 472 (583)
+.|....-|.|.-+|- ..+..+++.+-+|...- .-.|.|||||||||-.--+.-..+.-.-.++. -.+.+|
T Consensus 3 ~~F~l~s~f~PaGDQP----~AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNK----TLAaQL 73 (663)
T COG0556 3 KPFKLHSPFKPAGDQP----EAIAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNK----TLAAQL 73 (663)
T ss_pred CceEeccCCCCCCCcH----HHHHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecch----hHHHHH
Confidence 4577777788888886 45666777776666533 34699999999999642111110000000000 123466
Q ss_pred hHHhhc-cccceeEEEEeeeeechHhhhhccCCCccccccccchhhHHHHHHHHHHH-HHHHhhcceEEee
Q psy9448 473 FDELRL-LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRRDL-QAAREKNGVFLAA 541 (583)
Q Consensus 473 f~~~~~-~~~~~~~v~~S~~eiy~e~i~DLL~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~ 541 (583)
|+++.. .++..+.-.|||+..|+-+-| -|.. .+=+..++.-...|+.++... ...-.-+.+.+|+
T Consensus 74 y~Efk~fFP~NaVEYFVSYYDYYQPEAY---vp~t-DtyIEKdasiNdeId~mR~SAt~sLleR~DVIVVa 140 (663)
T COG0556 74 YSEFKEFFPENAVEYFVSYYDYYQPEAY---VPST-DTYIEKDASINDEIDRLRHSATRSLLERRDVIVVA 140 (663)
T ss_pred HHHHHHhCcCcceEEEeeeccccCcccc---cCCC-CceEecccchHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 766655 356678889999999975543 1221 122344444455666666442 2333344444443
No 61
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.47 E-value=0.052 Score=55.02 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=27.9
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
+.|++..+.+--++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 567888999999999999999999999998
No 62
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=89.55 E-value=0.22 Score=49.03 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=29.6
Q ss_pred cccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 393 k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
..|+||.-... .+++..|..+ ..+.+.--..+| .++-||++|+||||-|.+
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 56999976644 3344455443 333333111233 478999999999997765
No 63
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.97 E-value=0.2 Score=54.51 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=26.9
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
...+..+++.-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4456778888899999999999999999975
No 64
>PRK06893 DNA replication initiation factor; Validated
Probab=87.12 E-value=0.37 Score=47.70 Aligned_cols=49 Identities=10% Similarity=0.263 Sum_probs=32.2
Q ss_pred ccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 392 ~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
...++||..+.....+ .+.-+.+.+-.+++..++-||++|+||||-+..
T Consensus 10 ~~~~~fd~f~~~~~~~------~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 10 IDDETLDNFYADNNLL------LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCcccccccccCChHH------HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3567888888654221 122222333346777889999999999998865
No 65
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.99 E-value=0.26 Score=50.07 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=27.1
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 415 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 415 ~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
+.|++..+++--++-|+.-|+||||||.||-
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 4567788888899999999999999999984
No 66
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=84.43 E-value=0.32 Score=47.85 Aligned_cols=17 Identities=41% Similarity=0.864 Sum_probs=15.0
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.++-||++|+||||-|.
T Consensus 36 ~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred ceEEECCCCCCHHHHHH
Confidence 47889999999999774
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=83.02 E-value=0.67 Score=45.87 Aligned_cols=28 Identities=11% Similarity=0.266 Sum_probs=21.9
Q ss_pred HHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 40 IDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 40 v~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
...+-.+++-.++-||++|+||||.+..
T Consensus 31 ~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 31 RKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred HHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3344456777889999999999998854
No 68
>PF13245 AAA_19: Part of AAA domain
Probab=82.89 E-value=0.47 Score=38.34 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=18.2
Q ss_pred HHHHhcccceeEEEeeccCCCceEEee
Q psy9448 40 IDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 40 v~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
|..++. -+..++.-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 444555 33445558999999999884
No 69
>PRK06620 hypothetical protein; Validated
Probab=82.63 E-value=0.63 Score=45.61 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=32.9
Q ss_pred ccccccccccccccccceeehhhhhhhHHHHhcccc---eeEEEeeccCCCceEEeecc
Q psy9448 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYN---CTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 392 ~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n---~~i~ayGqtgsGKT~Tm~G~ 447 (583)
...|+||......++ ...|..+.. +.+. -|+| -.++-||++||||||-+...
T Consensus 10 ~~~~tfd~Fvvg~~N-~~a~~~~~~-~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 10 SSKYHPDEFIVSSSN-DQAYNIIKN-WQCG--FGVNPYKFTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred CCCCCchhhEecccH-HHHHHHHHH-HHHc--cccCCCcceEEEECCCCCCHHHHHHHH
Confidence 356888876655433 445655422 2221 1343 35899999999999998653
No 70
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.05 E-value=0.88 Score=48.37 Aligned_cols=26 Identities=42% Similarity=0.676 Sum_probs=18.8
Q ss_pred HHHHhccc-ceeEEEeeccCCCceEEe
Q psy9448 40 IDEVLSGY-NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 40 v~~~l~G~-n~~i~ayGqtgSGKT~Tm 65 (583)
+..++.|. ...++.||.||||||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 44444443 344999999999999877
No 71
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=81.34 E-value=0.63 Score=41.04 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=19.6
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..+...+.......++.+|++|+|||+.+
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 33444433434556889999999999765
No 72
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=80.76 E-value=0.69 Score=43.08 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=21.0
Q ss_pred hhhHHHHhcc-cceeEEEeeccCCCceEEeec
Q psy9448 37 NPLIDEVLSG-YNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 37 ~plv~~~l~G-~n~~i~ayGqtgSGKT~Tm~G 67 (583)
..+++.+-.+ ....++..++||||||++|..
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3344444333 356667788999999999964
No 73
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=79.85 E-value=0.7 Score=50.35 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=26.4
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
...+..+++.-++-|+.-|+||||||.||+.-
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~ 278 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYAA 278 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 33556677888889999999999999999763
No 74
>PRK10436 hypothetical protein; Provisional
Probab=79.78 E-value=0.68 Score=50.76 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=23.5
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3556666778899999999999999995
No 75
>PRK06526 transposase; Provisional
Probab=79.67 E-value=0.34 Score=48.79 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=15.9
Q ss_pred eEEEeeccCCCceEEeec
Q psy9448 50 TVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~G 67 (583)
.|+.+|++|+||||.+.+
T Consensus 100 nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred eEEEEeCCCCchHHHHHH
Confidence 378999999999999875
No 76
>PRK05642 DNA replication initiation factor; Validated
Probab=78.61 E-value=1.4 Score=43.68 Aligned_cols=48 Identities=10% Similarity=0.425 Sum_probs=29.0
Q ss_pred ccccccccccccccccceeehhhhhhhHHHHhc---cc-ceeEEEeeccCCCceEEeec
Q psy9448 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLS---GY-NCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 392 ~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~---G~-n~~i~ayGqtgsGKT~Tm~G 446 (583)
...|+||.-+... +. .+...++...+ +. .-.++-||++|+||||-+..
T Consensus 13 ~~~~tfdnF~~~~--~~-----~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 13 RDDATFANYYPGA--NA-----AALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CCcccccccCcCC--hH-----HHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 3458888777332 22 22333333322 22 24688999999999998765
No 77
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=78.28 E-value=0.81 Score=45.51 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=20.3
Q ss_pred HHHhccccee-EEEeeccCCCceEEe
Q psy9448 41 DEVLSGYNCT-VFAYGQTGTGKTFTM 65 (583)
Q Consensus 41 ~~~l~G~n~~-i~ayGqtgSGKT~Tm 65 (583)
..+++|..+- ++.||..|||||.++
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHH
Confidence 5677887654 778999999998776
No 78
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=77.96 E-value=0.85 Score=51.46 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=24.3
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45666777789999999999999999954
No 79
>PRK06526 transposase; Provisional
Probab=77.53 E-value=1 Score=45.32 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=16.0
Q ss_pred eEEEeeccCCCceEEeec
Q psy9448 429 TVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~G 446 (583)
.++.+|++|+||||.+.+
T Consensus 100 nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred eEEEEeCCCCchHHHHHH
Confidence 489999999999999875
No 80
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=77.34 E-value=1 Score=49.86 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=23.6
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44556677778899999999999999963
No 81
>PRK09087 hypothetical protein; Validated
Probab=77.27 E-value=1.1 Score=44.25 Aligned_cols=50 Identities=22% Similarity=0.207 Sum_probs=31.4
Q ss_pred ccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 392 ~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
...|+||.-+....+ ..+|.. ++....-.+-.++-||++||||||-+...
T Consensus 15 ~~~~~~~~Fi~~~~N-~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~~~ 64 (226)
T PRK09087 15 DPAYGRDDLLVTESN-RAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLASIW 64 (226)
T ss_pred CCCCChhceeecCch-HHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHHHH
Confidence 345788877754333 335553 22222223455899999999999988753
No 82
>PRK06620 hypothetical protein; Validated
Probab=77.16 E-value=1.2 Score=43.68 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.6
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 49 CTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~G 67 (583)
-.++-||++||||||.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999999964
No 83
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=76.52 E-value=1 Score=47.46 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=23.1
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
|.+..++.--.+.|+..|+||||||.||.-
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 455566654467899999999999999953
No 84
>PRK12377 putative replication protein; Provisional
Probab=76.45 E-value=1.3 Score=44.43 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=31.8
Q ss_pred ccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 396 GFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 396 ~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
+||.-......|..++.. +..+++.+..+. ..++-+|++|+||||.+..-
T Consensus 72 tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AI 121 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAI 121 (248)
T ss_pred CcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHH
Confidence 455443333455555554 345566555443 46889999999999988653
No 85
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=76.34 E-value=1.1 Score=47.84 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=20.9
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
++++.++. .++.|+..|+||||||+||.
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHH
Confidence 34444443 46678899999999999994
No 86
>PRK08116 hypothetical protein; Validated
Probab=76.31 E-value=0.97 Score=45.92 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=31.3
Q ss_pred ccccccccccccccceeehhhhhhhHHHHhc--ccceeEEEeeccCCCceEEeec
Q psy9448 394 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLS--GYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 394 ~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~--G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
.++||.-. .+..+...|.. +...++.+.. ..+..++-||.+|+||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 34565433 33444445544 3445555443 3345699999999999998864
No 87
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=76.31 E-value=0.73 Score=40.60 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=12.8
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 48 NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm 65 (583)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999877
No 88
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=75.95 E-value=0.83 Score=44.10 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=16.1
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999985
No 89
>PRK06835 DNA replication protein DnaC; Validated
Probab=75.63 E-value=1.4 Score=46.08 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=23.0
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
...++++-.+. -.++-||++|+||||.+.+
T Consensus 173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 173 KNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 45666665444 6699999999999998854
No 90
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.58 E-value=1.6 Score=43.78 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=25.3
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 36 ~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
+.|+++++.--.-+.|+..|+|||||+.||-
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4566777776677889999999999999983
No 91
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=75.44 E-value=1.2 Score=47.32 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=21.3
Q ss_pred HHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 40 IDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 40 v~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
+..++.--.+.|+..|+||||||.||..
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHH
Confidence 3334444568999999999999999843
No 92
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=75.36 E-value=1.2 Score=47.20 Aligned_cols=27 Identities=41% Similarity=0.678 Sum_probs=19.8
Q ss_pred HHHHhc-ccceeEEEeeccCCCceEEee
Q psy9448 419 IDEVLS-GYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 419 v~~~l~-G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
+..++. +....++-||++|+|||+++.
T Consensus 31 l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 31 LRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 333343 455689999999999998763
No 93
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=75.35 E-value=1.2 Score=42.88 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=21.7
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
..+..++...+..++..|+.||||||+|.
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 45666766555556678999999999883
No 94
>PRK12377 putative replication protein; Provisional
Probab=75.21 E-value=0.92 Score=45.52 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=26.2
Q ss_pred eEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 28 IVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 28 q~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
|..++.. +..+++.+..+. ..++-+|++|+||||.+..
T Consensus 83 ~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 83 QRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred HHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3334443 455666665553 4688899999999999864
No 95
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.04 E-value=0.86 Score=39.70 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=14.8
Q ss_pred EEEeeccCCCceEEeec
Q psy9448 51 VFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm~G 67 (583)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57889999999999865
No 96
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=74.99 E-value=0.98 Score=45.69 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=23.4
Q ss_pred hhhhhHHHHhccc---ceeEEEeeccCCCceEEee
Q psy9448 35 VVNPLIDEVLSGY---NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 35 ~~~plv~~~l~G~---n~~i~ayGqtgSGKT~Tm~ 66 (583)
...+.+..++... .+.|+..|+||||||.+|.
T Consensus 111 ~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 111 SIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHH
T ss_pred hhHHHHHHHHhhccccceEEEEECCCccccchHHH
Confidence 3344555666555 6778888999999999983
No 97
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=74.98 E-value=2.1 Score=42.57 Aligned_cols=45 Identities=22% Similarity=0.434 Sum_probs=27.9
Q ss_pred cccccccccccccceeehhhhhhhHHHHhcccce-eEEEeeccCCCceEEe
Q psy9448 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNC-TVFAYGQTGTGKTFTM 444 (583)
Q Consensus 395 f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~-~i~ayGqtgsGKT~Tm 444 (583)
..+|...+-+...+.+.+ -...+++|..+ .++-||..|+|||.++
T Consensus 24 ~~l~~L~Gie~Qk~~l~~-----Nt~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIE-----NTEQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCHHHhcCHHHHHHHHHH-----HHHHHHcCCCCcceEEecCCCCCHHHHH
Confidence 445555554443332222 23567788775 4788999999998554
No 98
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=74.92 E-value=1.3 Score=41.07 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.4
Q ss_pred cceeEEEeeccCCCceEEeec
Q psy9448 426 YNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 426 ~n~~i~ayGqtgsGKT~Tm~G 446 (583)
....++..++||||||++|..
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhhh
Confidence 356677888999999999975
No 99
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=74.32 E-value=1.2 Score=47.35 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=17.6
Q ss_pred cccceeEEEeeccCCCceEEee
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
.+-...++.||.+|+|||.|+.
T Consensus 39 ~~~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 39 GERPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred CCCCccEEEECCCCCCHhHHHH
Confidence 4444559999999999998873
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=74.03 E-value=1.7 Score=43.19 Aligned_cols=49 Identities=6% Similarity=0.242 Sum_probs=30.1
Q ss_pred ccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 392 ~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
...|+||.-+.. .+...+..+ ..+.. ......++-||++|+||||.+..
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCcCCccccccC--ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 345778755543 444454433 22221 22234789999999999999865
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=73.85 E-value=1.4 Score=49.62 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=33.7
Q ss_pred cccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 391 ISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 391 ~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
....|+||..+-... +...|..+ ..+++..-.++|. +|-||.+|+||||-+..-
T Consensus 281 L~~~~TFDnFvvG~s-N~~A~aaa-~avae~~~~~~Np-L~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 281 LNPKYTFDTFVIGAS-NRFAHAAA-VAVAEAPAKAYNP-LFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CCCCCCHhhhcCCCc-cHHHHHHH-HHHHhCccccCCc-EEEECCCCCCHHHHHHHH
Confidence 345688986654333 33344332 3344433335664 899999999999988653
No 102
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=73.78 E-value=1 Score=39.24 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.1
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 49 CTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~G 67 (583)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999854
No 103
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=73.60 E-value=1.8 Score=41.04 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=20.2
Q ss_pred ehhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 33 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 33 ~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
...+..+...-+-.-.-.++-+|++|+||||...+
T Consensus 32 ~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 32 KAQIAQLAALEFIENGENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHH
Confidence 33344443333322334588999999999998865
No 104
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=73.44 E-value=1.5 Score=38.54 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=18.2
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
+...+.......++.+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333334457889999999999544
No 105
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=73.15 E-value=1.5 Score=44.43 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=22.0
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.+..++..-.+.|+-.|+||||||.+|.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 4455666556778888999999999995
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=72.56 E-value=2 Score=42.68 Aligned_cols=19 Identities=16% Similarity=0.684 Sum_probs=16.2
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 49 CTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~G 67 (583)
..++-||++|+||||-+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4688999999999998753
No 107
>PRK08727 hypothetical protein; Validated
Probab=72.41 E-value=1.4 Score=43.74 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=16.3
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 49 CTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~G 67 (583)
-.|+-||++|+||||.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3599999999999998853
No 108
>KOG0989|consensus
Probab=72.15 E-value=1.6 Score=44.68 Aligned_cols=45 Identities=24% Similarity=0.056 Sum_probs=29.8
Q ss_pred hcccCCceEEEeehhhhhhHHHHhcc-cceeEEEeeccCCCceEEe
Q psy9448 21 VCIFYTTIVDVYKYVVNPLIDEVLSG-YNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 21 Vf~~~~tq~~vy~~~~~plv~~~l~G-~n~~i~ayGqtgSGKT~Tm 65 (583)
-|-|.+--+-++++.+-.++.+.+.+ .---.+-||+.|+|||.|.
T Consensus 29 KYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 29 KYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 34444444555665555556665555 4445788999999999986
No 109
>PRK07952 DNA replication protein DnaC; Validated
Probab=72.04 E-value=1.8 Score=43.26 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=29.4
Q ss_pred cccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 395 f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
.+||.-......|..++..+ ...++..-.+. ..++-+|.+|+||||.+..
T Consensus 69 ~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 45554333333454455443 33444433332 3689999999999998865
No 110
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.01 E-value=1.1 Score=44.05 Aligned_cols=15 Identities=40% Similarity=0.769 Sum_probs=13.0
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
+..+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 446799999999998
No 111
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=71.84 E-value=1.5 Score=48.01 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=33.7
Q ss_pred cccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 391 ISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 391 ~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
....|+||.-... .++...|..+. .+.+. -..+|. ++-||++|+||||-+..-
T Consensus 98 l~~~~tFdnFv~g-~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ai 150 (440)
T PRK14088 98 LNPDYTFENFVVG-PGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQSI 150 (440)
T ss_pred CCCCCcccccccC-CchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHHHH
Confidence 3456899876643 44555555542 23322 122564 999999999999998643
No 112
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=71.49 E-value=1.6 Score=46.62 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=16.9
Q ss_pred ccceeEEEeeccCCCceEEee
Q psy9448 425 GYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 425 G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
+....++-||++|+|||+++.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 444678999999999997763
No 113
>PRK08181 transposase; Validated
Probab=71.34 E-value=2 Score=43.68 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=16.4
Q ss_pred eEEEeeccCCCceEEeecc
Q psy9448 429 TVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~G~ 447 (583)
.++-||++|+||||-+.+-
T Consensus 108 nlll~Gp~GtGKTHLa~Ai 126 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAI 126 (269)
T ss_pred eEEEEecCCCcHHHHHHHH
Confidence 3899999999999988763
No 114
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=71.02 E-value=2.7 Score=41.02 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=18.9
Q ss_pred cccceeEEEeeccCCCceEEeec
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
......++-||++|+||||....
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHH
Confidence 45667899999999999987743
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=70.96 E-value=1.1 Score=50.62 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=30.5
Q ss_pred eeeeeeehhhcccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 12 MMVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 12 ~~~~~~~D~Vf~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
....+.||-.+.... ++-.|. .+..+++..-.++|. ||-||.+|+||||.+..
T Consensus 281 L~~~~TFDnFvvG~s-N~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 281 LNPKYTFDTFVIGAS-NRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCCHhhhcCCCc-cHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 444556774332222 222332 234444433345665 89999999999999853
No 116
>PF13245 AAA_19: Part of AAA domain
Probab=70.61 E-value=1.6 Score=35.24 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=16.6
Q ss_pred HHHHhcccceeEEEeeccCCCceEEee
Q psy9448 419 IDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 419 v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
|...+. -+..+..-|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 333444 23334458999999997764
No 117
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=69.99 E-value=1.3 Score=38.51 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=15.4
Q ss_pred EEEeeccCCCceEEeecc
Q psy9448 430 VFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm~G~ 447 (583)
++.+|++|+|||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 578999999999988764
No 118
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=69.97 E-value=3 Score=38.29 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=21.5
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
.+++.+.+|.+ ++..|+||||||.....
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 35566667776 67889999999988753
No 119
>PRK08084 DNA replication initiation factor; Provisional
Probab=69.69 E-value=1.4 Score=43.80 Aligned_cols=19 Identities=11% Similarity=0.515 Sum_probs=16.7
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 49 CTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~G 67 (583)
..++-||++|+||||.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4789999999999999853
No 120
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=69.47 E-value=1.6 Score=42.39 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=21.4
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
+.+.+.+-.|.+..++-||+.|+|||+.|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 444444445678899999999999998773
No 121
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=69.35 E-value=1.5 Score=42.39 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=14.8
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999984
No 122
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=69.34 E-value=3.1 Score=40.85 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=28.4
Q ss_pred cccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 393 k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
..++||..+... . +..... +..+... ......++-||++|+||||-+..
T Consensus 13 ~~~~~d~f~~~~-~-~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAGE-N-AELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccCC-c-HHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 457888877322 2 222222 2222221 13345789999999999987644
No 123
>PF12846 AAA_10: AAA-like domain
Probab=69.12 E-value=1.5 Score=44.56 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=15.8
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999998884
No 124
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=69.06 E-value=1.8 Score=47.47 Aligned_cols=53 Identities=21% Similarity=0.361 Sum_probs=31.2
Q ss_pred cccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 391 ISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 391 ~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
....|+||.-.. ...+...|..+ ..+.+.--..+| .++-||++|+||||.+..
T Consensus 115 l~~~~tfd~fv~-g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 115 LNPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCCccccccc-CCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 456788887432 23444444443 223332112344 588899999999998854
No 125
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=68.85 E-value=2.7 Score=40.96 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=18.8
Q ss_pred cccceeEEEeeccCCCceEEee
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
......|+-||++|+||||.+.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHH
Confidence 5667789999999999999873
No 126
>PRK08116 hypothetical protein; Validated
Probab=68.56 E-value=2.5 Score=42.87 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=25.5
Q ss_pred eEEEeehhhhhhHHHHhc--ccceeEEEeeccCCCceEEee
Q psy9448 28 IVDVYKYVVNPLIDEVLS--GYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 28 q~~vy~~~~~plv~~~l~--G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
+...|.. +...++++.+ ..+..++-||++|+||||.+.
T Consensus 93 ~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 93 SEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred HHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 3334433 4556666543 345569999999999999885
No 127
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=68.39 E-value=1.4 Score=38.73 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=11.9
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 427 NCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm 444 (583)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 356899999999999444
No 128
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=68.21 E-value=2.4 Score=45.73 Aligned_cols=53 Identities=21% Similarity=0.361 Sum_probs=30.8
Q ss_pred cccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 391 ISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 391 ~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
....|+||.-.. ...+...|..+ ..+.+.--..+| .++-||++|+||||.+..
T Consensus 103 l~~~~tfd~fi~-g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 103 LNPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCCccccccc-CCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 456788987432 23344344432 323332111233 478899999999998854
No 129
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=67.94 E-value=1.5 Score=43.09 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=14.4
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 429 TVFAYGQTGTGKTFTME 445 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~ 445 (583)
-+...|.||||||+|+.
T Consensus 25 H~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVK 41 (229)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 45678999999999983
No 130
>PF13479 AAA_24: AAA domain
Probab=67.78 E-value=1.8 Score=42.19 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=16.7
Q ss_pred ceeEEEeeccCCCceEEeec
Q psy9448 48 NCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~G 67 (583)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999987754
No 131
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=67.67 E-value=1.4 Score=46.57 Aligned_cols=27 Identities=41% Similarity=0.648 Sum_probs=20.1
Q ss_pred hHHHHhc-ccceeEEEeeccCCCceEEe
Q psy9448 39 LIDEVLS-GYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 39 lv~~~l~-G~n~~i~ayGqtgSGKT~Tm 65 (583)
.+..++. +....++-||++|+|||+++
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3344443 45568999999999999877
No 132
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=67.48 E-value=2.2 Score=44.53 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=20.2
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..++..++.+ ...|+..|.||||||++|
T Consensus 138 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRA-HRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3556666665 355666799999999776
No 133
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=67.08 E-value=2.4 Score=36.76 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=13.7
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|+-.|++|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999765
No 134
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=66.99 E-value=2.2 Score=44.02 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=22.2
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 36 ~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
...++..++.+ ...|+..|+||||||.+|-
T Consensus 121 ~~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 121 QRDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 34556666664 4567888999999999873
No 135
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=66.90 E-value=2.2 Score=37.36 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.2
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+-||++|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999876
No 136
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=66.71 E-value=2.2 Score=42.92 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=17.7
Q ss_pred hcccceeEEEeeccCCCceEEee
Q psy9448 44 LSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 44 l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
++.....++-+|++|+|||+.+-
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 33335578889999999998774
No 137
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=66.70 E-value=2.7 Score=42.31 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=24.9
Q ss_pred cccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 405 SKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 405 ~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
..+..++..+ ..+++.+-+ .-.++-||+.|+||||-..+
T Consensus 86 ~~~~~~l~~~-~~~~~~~~~--~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 86 GIDKKALEDL-ASLVEFFER--GENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred chhHHHHHHH-HHHHHHhcc--CCcEEEECCCCCcHHHHHHH
Confidence 4455555554 334444433 34578899999999998754
No 138
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=66.35 E-value=3.2 Score=39.34 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=15.9
Q ss_pred ceeEEEeeccCCCceEEeec
Q psy9448 427 NCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G 446 (583)
.-.++-+|++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 34589999999999998765
No 139
>PRK08181 transposase; Validated
Probab=66.33 E-value=2.6 Score=42.89 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=17.5
Q ss_pred cccceeEEEeeccCCCceEEeec
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
.|.| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4444 89999999999999876
No 140
>PRK07952 DNA replication protein DnaC; Validated
Probab=66.24 E-value=1.8 Score=43.28 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=20.3
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
..++.+..|. ..++-+|++|+||||.+..
T Consensus 90 ~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 90 QYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred HHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 3444433332 3688999999999998864
No 141
>PHA00729 NTP-binding motif containing protein
Probab=66.03 E-value=3.7 Score=40.47 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=22.7
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 36 ~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
++-+++.+..|--..|+.+|.+|+||||...
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 3456666654444579999999999998764
No 142
>PRK08727 hypothetical protein; Validated
Probab=66.02 E-value=2.3 Score=42.22 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=16.5
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 428 CTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~Tm~G 446 (583)
-.++-||++|+||||-+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3599999999999998865
No 143
>PRK10436 hypothetical protein; Provisional
Probab=65.96 E-value=2.4 Score=46.51 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=23.1
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
.+..++..-.+.|+..|+||||||.||.-
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 34455666778899999999999999853
No 144
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=65.89 E-value=2.3 Score=42.98 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=20.4
Q ss_pred hhHHHHhccc---ceeEEEeeccCCCceEEee
Q psy9448 417 PLIDEVLSGY---NCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 417 ~~v~~~l~G~---n~~i~ayGqtgsGKT~Tm~ 445 (583)
+.+..++... .+.|+.-|.||||||.+|.
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHH
Confidence 3344444433 6778889999999997773
No 145
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=65.68 E-value=2.3 Score=41.18 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=17.1
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.|..++.--. ..+..|+.|||||+|+.
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 3445553333 45668999999998884
No 146
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=65.36 E-value=2.4 Score=47.85 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=23.5
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 44566667778899999999999999854
No 147
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=65.27 E-value=1.8 Score=46.36 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=16.2
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
---+|-||++|+||||.|.
T Consensus 113 ~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3458899999999999994
No 148
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=65.07 E-value=2.7 Score=46.50 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=22.9
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
.+..++..-.+.++..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44556666677889999999999999864
No 149
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=65.05 E-value=1.9 Score=47.25 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=30.8
Q ss_pred ccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 394 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 394 ~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
.|+||.-.... +++..|.. +..+.+.-=..+| .+|-||.+|+||||.|..-
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~Ai 161 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKAA 161 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHHH
Confidence 48998766443 34445543 2333321101234 4889999999999998653
No 150
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=64.97 E-value=2 Score=46.97 Aligned_cols=19 Identities=47% Similarity=0.887 Sum_probs=16.6
Q ss_pred cceeEEEeeccCCCceEEee
Q psy9448 47 YNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 47 ~n~~i~ayGqtgSGKT~Tm~ 66 (583)
+|. ++-||++|+||||.+.
T Consensus 130 ~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 130 YNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCe-EEEEcCCCCcHHHHHH
Confidence 564 9999999999999985
No 151
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=64.07 E-value=2.8 Score=37.50 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=14.1
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.|+..|.+|||||+..-
T Consensus 1 lii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 37889999999998753
No 152
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=63.75 E-value=6.4 Score=41.61 Aligned_cols=46 Identities=15% Similarity=0.378 Sum_probs=30.0
Q ss_pred cceeEEEeeccCCCce---------------------EEeecccCCCCCCCcccCCCCccchhhhhHHHHH
Q psy9448 47 YNCTVFAYGQTGTGKT---------------------FTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 96 (583)
Q Consensus 47 ~n~~i~ayGqtgSGKT---------------------~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~ 96 (583)
.+-.+.-.|++||||| |++-|..-.+ +..++ --||+|....+.|..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s---p~~e~-Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES---PMHED-PLHLFPDELREDLED 143 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC---CCccC-CcccCCHHHHHHHHH
Confidence 3466888999999999 5565522111 11122 259999999988843
No 153
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=63.72 E-value=2.6 Score=49.29 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=20.3
Q ss_pred hhHHHHhc--ccceeEEEeeccCCCceEEe
Q psy9448 38 PLIDEVLS--GYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 38 plv~~~l~--G~n~~i~ayGqtgSGKT~Tm 65 (583)
.++..++. |-+.+++.||++|+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 33444443 44556789999999999887
No 154
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=63.71 E-value=3.8 Score=39.84 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=17.2
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.++.++ .+-.+++.|+.|||||+.-.
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHHH
Confidence 344444 56688999999999998664
No 155
>PF12846 AAA_10: AAA-like domain
Probab=63.66 E-value=2.1 Score=43.35 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.1
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 427 NCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~ 445 (583)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567899999999998875
No 156
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=63.45 E-value=4.3 Score=39.81 Aligned_cols=21 Identities=14% Similarity=0.498 Sum_probs=17.3
Q ss_pred ccceeEEEeeccCCCceEEee
Q psy9448 46 GYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 46 G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
..+..++-||++|+||||.+.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 345579999999999999874
No 157
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=63.38 E-value=2.9 Score=44.11 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=21.8
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 417 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 417 ~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
+.+..++.--...|+-.|+||||||.||.-
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 344454544457789999999999988854
No 158
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=63.05 E-value=3 Score=43.72 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=19.6
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.++..++.+. ..|+..|+||||||.+|-
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 4455455433 457778999999999883
No 159
>PRK06835 DNA replication protein DnaC; Validated
Probab=62.95 E-value=3.8 Score=42.93 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=22.2
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
...++.+-.+. -.++-||++|+||||-+.+
T Consensus 173 ~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 173 KNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34566554444 5699999999999998765
No 160
>PRK08939 primosomal protein DnaI; Reviewed
Probab=62.78 E-value=3 Score=43.25 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=26.4
Q ss_pred ccceeehhhhhhhHHHHhcc-cceeEEEeeccCCCceEEeecc
Q psy9448 406 KQVDVYKYVVNPLIDEVLSG-YNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 406 ~q~~vy~~~~~~~v~~~l~G-~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
.+..++..+ ...++....| ..-.++-||++|+||||-+.+-
T Consensus 135 ~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 135 DRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred HHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHHHH
Confidence 444455532 4455544432 2346999999999999988653
No 161
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=62.71 E-value=1.6 Score=40.78 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=12.9
Q ss_pred hcccceeEEEeeccCCCceEEe
Q psy9448 44 LSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 44 l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..|-...++.+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566778999999999999876
No 162
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=62.68 E-value=3.3 Score=39.44 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=21.4
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 36 ~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
..+++...+.. ...++-.|++|||||.+|-
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 45566666654 3456778999999998773
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=62.47 E-value=2.3 Score=36.91 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.7
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 428 CTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~Tm~G 446 (583)
..++-+|++|||||.++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 3578899999999988754
No 164
>PRK09183 transposase/IS protein; Provisional
Probab=62.45 E-value=3.2 Score=41.92 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.0
Q ss_pred eEEEeeccCCCceEEeec
Q psy9448 429 TVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~G 446 (583)
.++-+|++|+||||-+..
T Consensus 104 ~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 466899999999988764
No 165
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=62.36 E-value=12 Score=37.28 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=32.6
Q ss_pred ecchhHHHHHHHhcchhhhhHHHHhhhcccCceeEEEEEEEeecCCCChhhHhhccCceeeeccCCccc
Q psy9448 154 VHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENI 222 (583)
Q Consensus 154 v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~L~~VDLAGsEr~ 222 (583)
+.+++++.+.+..+...- ......-|.-++.+.|.... .-.|+||||+|-.+.
T Consensus 86 ~~~~~~v~~~i~~~~~~~------~~~~~~~s~~~i~l~i~~p~----------~~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDRV------TGTNKGISPVPINLRVYSPH----------VLNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHHh------cCCCCcccCcceEEEEeCCC----------CCceEEEeCCCcccc
Confidence 457788888776553321 11112346667777776443 246999999998643
No 166
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=61.84 E-value=3.3 Score=43.02 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.0
Q ss_pred cccceeEEEeeccCCCceEEee
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.|....++-||++|+|||+++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 4443358889999999998874
No 167
>PRK09087 hypothetical protein; Validated
Probab=61.69 E-value=4.7 Score=39.83 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.6
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
+-.++-||++||||||.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4558999999999999985
No 168
>PRK08939 primosomal protein DnaI; Reviewed
Probab=61.64 E-value=2.2 Score=44.25 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=25.2
Q ss_pred eEEEeehhhhhhHHHHhcc-cceeEEEeeccCCCceEEeec
Q psy9448 28 IVDVYKYVVNPLIDEVLSG-YNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 28 q~~vy~~~~~plv~~~l~G-~n~~i~ayGqtgSGKT~Tm~G 67 (583)
+..++.. +...++....| ..-.++-||++|+||||.+.+
T Consensus 136 ~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 136 RLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred HHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 3344443 24455554433 234689999999999999965
No 169
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=61.58 E-value=5.5 Score=46.50 Aligned_cols=56 Identities=32% Similarity=0.379 Sum_probs=36.0
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHHHHHH-hhccceeEEEEEeehhhc
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL-RLLGDAEFTVRVSFLEIY 115 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~-~~~~~~~~~v~vS~~EIy 115 (583)
..+..+.+|.|+.|+| |||||||-+-| +| +++.|++.- ....+.-+.++||=+---
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAAf-------------------Lp-il~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAAF-------------------LP-VINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHHH-------------------HH-HHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3566778999999887 99999986543 33 455555542 222334566777765443
No 170
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=60.83 E-value=3 Score=44.56 Aligned_cols=20 Identities=45% Similarity=0.649 Sum_probs=16.7
Q ss_pred ccceeEEEeeccCCCceEEe
Q psy9448 46 GYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 46 G~n~~i~ayGqtgSGKT~Tm 65 (583)
+....++-||++|+|||+++
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34466899999999999887
No 171
>KOG0989|consensus
Probab=60.80 E-value=4.3 Score=41.62 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=22.1
Q ss_pred ehhhhhhhHHH-HhcccceeEEEeeccCCCceEEe
Q psy9448 411 YKYVVNPLIDE-VLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 411 y~~~~~~~v~~-~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
++..+-.++.. +..+---..+=||+.|+|||.|.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33444444444 44434456788999999999886
No 172
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=60.71 E-value=3.5 Score=44.45 Aligned_cols=17 Identities=41% Similarity=0.802 Sum_probs=15.0
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.++-||++|+||||.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 47889999999999884
No 173
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=60.64 E-value=3.6 Score=39.63 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=20.5
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
.+..++...+-.++..|..||||||+|..
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~~ 37 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLKA 37 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHHH
Confidence 45555655544566689999999998743
No 174
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=60.57 E-value=3.6 Score=42.98 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=20.3
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..++..++.+. ..|+-.|.||||||.+|
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 34555555432 35778899999999988
No 175
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.52 E-value=5 Score=40.35 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=23.6
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 415 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 415 ~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
+.++++.+.-...+-|+..|.|||||+.||
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 455666666566778889999999999987
No 176
>PRK06921 hypothetical protein; Provisional
Probab=60.39 E-value=5 Score=40.71 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.0
Q ss_pred ceeEEEeeccCCCceEEeec
Q psy9448 48 NCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~G 67 (583)
.-.++-||++|+||||.+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 45688999999999999864
No 177
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=60.23 E-value=3.6 Score=43.64 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=19.1
Q ss_pred hcccceeEEEeeccCCCceEEeec
Q psy9448 423 LSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 423 l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
+.--...|+..|+||||||.||..
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHHH
Confidence 333468899999999999988743
No 178
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=60.06 E-value=2.8 Score=40.45 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=15.2
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 428 CTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~Tm~ 445 (583)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 467888999999998875
No 179
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=59.97 E-value=3.6 Score=43.85 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.7
Q ss_pred cceeEEEeeccCCCceEEee
Q psy9448 426 YNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 426 ~n~~i~ayGqtgsGKT~Tm~ 445 (583)
.++.++..|+||||||.||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 35568889999999998884
No 180
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=59.78 E-value=3.4 Score=42.09 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=17.9
Q ss_pred HhcccceeEEEeeccCCCceEEeec
Q psy9448 43 VLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 43 ~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
++.-.++.++..|..|||||+||..
T Consensus 8 ~i~~~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 8 IIRSTEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp HHHS-SSEEEEEE-TTSSHHHHHHH
T ss_pred HHhCCCCCEEEEeCCCCCchHHHHH
Confidence 3333677888889999999999953
No 181
>PRK06547 hypothetical protein; Provisional
Probab=59.52 E-value=5.8 Score=37.40 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=19.7
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
+.++..+..+.---|..+|.+|||||+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 34455555555555666799999999765
No 182
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=59.33 E-value=4 Score=41.34 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
.+..++..-...|+-.|.||||||.+|.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3445555556678899999999998885
No 183
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=59.14 E-value=3.9 Score=42.65 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=21.8
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
..++..++++. +.|+-.|-||||||.++-
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 34555555565 778889999999998873
No 184
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=59.08 E-value=2.8 Score=44.56 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=27.1
Q ss_pred cccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 405 SKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 405 ~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
..|+.+|+.++..+. ......+|.-|+.|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 568888888755443 345567799999999999986
No 185
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=58.88 E-value=1.9 Score=45.93 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=26.4
Q ss_pred CCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 25 YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 25 ~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
+..|+++|+.++.-+. ......+|.-|+.|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 3457777777755433 344456788999999999987
No 186
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=58.58 E-value=2.3 Score=36.53 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=13.2
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999877
No 187
>PF13479 AAA_24: AAA domain
Probab=58.43 E-value=3.8 Score=39.99 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=16.2
Q ss_pred ceeEEEeeccCCCceEEeec
Q psy9448 427 NCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G 446 (583)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999976643
No 188
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=58.26 E-value=3.6 Score=38.80 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.6
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999865
No 189
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=58.16 E-value=4 Score=42.13 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=20.9
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
..++..++.+ ...++..|.||||||.+|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 4455555553 4578899999999997763
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=58.15 E-value=3.4 Score=41.43 Aligned_cols=17 Identities=47% Similarity=0.722 Sum_probs=14.6
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 46899999999999764
No 191
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=58.02 E-value=4.3 Score=44.46 Aligned_cols=17 Identities=41% Similarity=0.802 Sum_probs=15.2
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.++-||++|+||||.+.
T Consensus 150 ~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57889999999999984
No 192
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=57.91 E-value=6.6 Score=35.95 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=20.3
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
+++.+.+|.+ ++..|+||+|||.....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 4555566666 78999999999977654
No 193
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=57.31 E-value=8.3 Score=41.53 Aligned_cols=50 Identities=26% Similarity=0.382 Sum_probs=30.1
Q ss_pred cccccccccccccceeehhhhhhhHH-HHhc--c--cceeEEEeeccCCCceEEe
Q psy9448 395 FGFDRVFSQESKQVDVYKYVVNPLID-EVLS--G--YNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 395 f~fD~vf~~~~~q~~vy~~~~~~~v~-~~l~--G--~n~~i~ayGqtgsGKT~Tm 444 (583)
.+|+.|-+.+..-+++-+.+..|+.. ..+. | ....++-||++|+|||+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 55555555544444444444445443 2343 2 2456899999999999765
No 194
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=57.02 E-value=3.9 Score=39.49 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=20.9
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
..+.+.+-.|.+..++-||+.|+|||..|.
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 334444445667889999999999997664
No 195
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=56.96 E-value=3 Score=40.16 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.1
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
-++.+|+||||||.+|.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 67899999999999884
No 196
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=56.89 E-value=4.7 Score=44.96 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=23.3
Q ss_pred hhhhHHHHhcccc--eeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSGYN--CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G~n--~~i~ayGqtgSGKT~Tm 65 (583)
|+.+++..+.|.. ..++.+||+|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5666777665653 46788999999999988
No 197
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=56.78 E-value=15 Score=38.94 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=15.5
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 428 CTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~Tm~G 446 (583)
..++-||++|+|||+.+..
T Consensus 157 ~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999977643
No 198
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=56.73 E-value=4.5 Score=35.13 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=12.8
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 577899999999766
No 199
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=56.34 E-value=2.7 Score=42.02 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=12.2
Q ss_pred EEeeccCCCceEEe
Q psy9448 52 FAYGQTGTGKTFTM 65 (583)
Q Consensus 52 ~ayGqtgSGKT~Tm 65 (583)
.-.|++|||||.||
T Consensus 31 vliGpSGsGKTTtL 44 (309)
T COG1125 31 VLIGPSGSGKTTTL 44 (309)
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999999
No 200
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=56.20 E-value=5.1 Score=37.14 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=19.4
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
++..+.++. ..++..|++|||||.++..
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 455555553 3456778999999997754
No 201
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=56.17 E-value=3.5 Score=43.46 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=20.5
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
..++..++.+ ...|+..|+||||||.+|-.
T Consensus 152 ~~~l~~~v~~-~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 152 EAFLHACVVG-RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHHc-CCeEEEECCCCccHHHHHHH
Confidence 3445555432 34577889999999998843
No 202
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=55.98 E-value=4.4 Score=35.34 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=12.7
Q ss_pred EEEeeccCCCceEEe
Q psy9448 430 VFAYGQTGTGKTFTM 444 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm 444 (583)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999665
No 203
>PRK09183 transposase/IS protein; Provisional
Probab=55.57 E-value=4.9 Score=40.57 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.1
Q ss_pred eEEEeeccCCCceEEeec
Q psy9448 50 TVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~G 67 (583)
.++-+|++|+||||.+.+
T Consensus 104 ~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred eEEEEeCCCCCHHHHHHH
Confidence 466799999999998854
No 204
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=55.28 E-value=4.9 Score=41.93 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=19.8
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
..++..++.+ ...++..|.||||||.+|.
T Consensus 138 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRA-HRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455555554 3567777999999996653
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.26 E-value=3.7 Score=39.60 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=14.0
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 429 TVFAYGQTGTGKTFTME 445 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~ 445 (583)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46678999999998873
No 206
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=55.22 E-value=4.9 Score=47.12 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=16.4
Q ss_pred ccceeEEEeeccCCCceEEe
Q psy9448 425 GYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 425 G~n~~i~ayGqtgsGKT~Tm 444 (583)
|-+.+++.||++|+|||.|+
T Consensus 779 gpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44456789999999999877
No 207
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=55.13 E-value=3.8 Score=41.95 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=15.0
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
..|+-.|++|+|||+|+.
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356677999999999995
No 208
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=54.50 E-value=5.9 Score=45.56 Aligned_cols=93 Identities=24% Similarity=0.360 Sum_probs=55.9
Q ss_pred cccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchh--hhhhh
Q psy9448 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPR--AMNHL 472 (583)
Q Consensus 395 f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr--~~~~l 472 (583)
|....-|.|.-.|..-+.. +++.+-+|.... ..+|.||||||+||-.--..... +..=|.|. .+.+|
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~------p~Lvi~~n~~~A~ql 70 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNR------PTLVIAHNKTLAAQL 70 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCC------CEEEEECCHHHHHHH
Confidence 4444557787788755554 455555553222 37899999999999764322110 00011222 34567
Q ss_pred hHHhhcc-ccceeEEEEeeeeechHhh
Q psy9448 473 FDELRLL-GDAEFTVRVSFLEIYNEEL 498 (583)
Q Consensus 473 f~~~~~~-~~~~~~v~~S~~eiy~e~i 498 (583)
++.+... ++..+...|||+..|.-+.
T Consensus 71 ~~el~~f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 71 YNEFKEFFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred HHHHHHhCCCCeEEEEeeecccCCccc
Confidence 7666554 3445888999999997665
No 209
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=54.15 E-value=3.7 Score=44.09 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=40.2
Q ss_pred cccccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeeccccCCCCcccccCCCCccchhhhh
Q psy9448 391 ISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470 (583)
Q Consensus 391 ~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~ 470 (583)
....|+||.-.... ++.-.|... .-+...-.+.---+|-||.+|+||||-|.--.+.- ....+...+++-..+
T Consensus 80 l~~~ytFdnFv~g~-~N~~A~aa~--~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~----~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGP-SNRLAYAAA--KAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEA----LANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCC-chHHHHHHH--HHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHH----HhhCCCceEEeccHH
Confidence 45679998755443 333233321 11222222223368999999999999996543211 011223356665555
Q ss_pred hhh
Q psy9448 471 HLF 473 (583)
Q Consensus 471 ~lf 473 (583)
+.+
T Consensus 153 ~f~ 155 (408)
T COG0593 153 DFT 155 (408)
T ss_pred HHH
Confidence 544
No 210
>PHA00729 NTP-binding motif containing protein
Probab=53.91 E-value=7.8 Score=38.23 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=21.7
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
+.+++.+..|--..|+.+|.+|+||||-...
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 3455555544335899999999999976544
No 211
>PRK13764 ATPase; Provisional
Probab=53.91 E-value=5.1 Score=45.33 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.1
Q ss_pred ccceeEEEeeccCCCceEEee
Q psy9448 46 GYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 46 G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.....|+..|+||||||+++.
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHH
Confidence 334558999999999999984
No 212
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=53.90 E-value=23 Score=35.28 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=18.5
Q ss_pred HHHhccccee-EEEeeccCCCce
Q psy9448 420 DEVLSGYNCT-VFAYGQTGTGKT 441 (583)
Q Consensus 420 ~~~l~G~n~~-i~ayGqtgsGKT 441 (583)
..+++|+.+. |+-+|.-|+||+
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKS 99 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKS 99 (287)
T ss_pred HHHHcCCcccceEEecCCCCChH
Confidence 3577888864 899999999997
No 213
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=53.50 E-value=4.4 Score=40.84 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.6
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
...++-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3457889999999998873
No 214
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=53.31 E-value=5.9 Score=34.29 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.4
Q ss_pred eEEEeeccCCCceEE
Q psy9448 429 TVFAYGQTGTGKTFT 443 (583)
Q Consensus 429 ~i~ayGqtgsGKT~T 443 (583)
.|+-.|++|||||+.
T Consensus 1 vI~I~G~~gsGKST~ 15 (121)
T PF13207_consen 1 VIIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 378899999999943
No 215
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.25 E-value=4.2 Score=43.60 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=16.6
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
...|+.+|+||+|||.|+-
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999983
No 216
>KOG2228|consensus
Probab=53.12 E-value=14 Score=38.57 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=44.3
Q ss_pred HHhcccceeEEEeeccCCCceEEeeccccC--CCCcccccCCCCccchh---hhhhhhHHhhccccceeEEEEeeeee
Q psy9448 421 EVLSGYNCTVFAYGQTGTGKTFTMEGEKSN--DPSISWQDDPLSGIVPR---AMNHLFDELRLLGDAEFTVRVSFLEI 493 (583)
Q Consensus 421 ~~l~G~n~~i~ayGqtgsGKT~Tm~G~~~~--~~~~~~~~~~~~Giipr---~~~~lf~~~~~~~~~~~~v~~S~~ei 493 (583)
.++.|-.-+++-.|+.|||||+-+--.-.. ...+..---...|.+.- ++..|-.+++........+..||-|.
T Consensus 43 t~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~ 120 (408)
T KOG2228|consen 43 TILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTEN 120 (408)
T ss_pred HHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchh
Confidence 467888889999999999999766321111 00000000112366666 77777777766555555666777663
No 217
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=52.80 E-value=6.8 Score=34.98 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=13.3
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+-+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999998766
No 218
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.82 E-value=4.7 Score=42.93 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=16.4
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
...++-.|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4577889999999999984
No 219
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=51.31 E-value=5.5 Score=41.15 Aligned_cols=49 Identities=14% Similarity=0.005 Sum_probs=27.8
Q ss_pred ehhhcccCCceEEEeehhhhhhHHHHh-ccc-ceeEEEeeccCCCceEEee
Q psy9448 18 MFLVCIFYTTIVDVYKYVVNPLIDEVL-SGY-NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 18 ~D~Vf~~~~tq~~vy~~~~~plv~~~l-~G~-n~~i~ayGqtgSGKT~Tm~ 66 (583)
++..+.|.+-.+-+.+..+...+..++ .|. ...++-||++|+|||+.+.
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHH
Confidence 444444543333334443333444443 453 3466669999999998874
No 220
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=51.23 E-value=4.4 Score=44.41 Aligned_cols=17 Identities=41% Similarity=0.913 Sum_probs=15.2
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.++-||++|+||||.|.
T Consensus 143 pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 143 PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ceEEECCCCCcHHHHHH
Confidence 48899999999999884
No 221
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=51.21 E-value=6.7 Score=40.71 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=16.7
Q ss_pred cccceeEEEeeccCCCceEEee
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
.|....++-||++|+|||+++.
T Consensus 33 ~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 33 SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred CCCCceEEEECCCCCCHHHHHH
Confidence 3443468889999999997763
No 222
>PRK04328 hypothetical protein; Provisional
Probab=51.17 E-value=9.9 Score=38.07 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=22.2
Q ss_pred hhhHHHHhcc---cceeEEEeeccCCCceE
Q psy9448 37 NPLIDEVLSG---YNCTVFAYGQTGTGKTF 63 (583)
Q Consensus 37 ~plv~~~l~G---~n~~i~ayGqtgSGKT~ 63 (583)
-|-+|.++.| ...+++.+|++|||||.
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 4567888876 57889999999999974
No 223
>PRK10536 hypothetical protein; Provisional
Probab=51.12 E-value=8.2 Score=38.89 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=16.1
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
+.-++..|++||||||...
T Consensus 74 ~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3488999999999998764
No 224
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=51.09 E-value=9 Score=44.06 Aligned_cols=85 Identities=21% Similarity=0.300 Sum_probs=48.9
Q ss_pred cccCCceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccc--h--hhhhHHHHHH
Q psy9448 22 CIFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIV--P--RAMNHLFDEL 97 (583)
Q Consensus 22 f~~~~tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Gii--p--r~~~~lf~~~ 97 (583)
|.|.-.|..-++ .+++.+-+|...- ..+|.||||||+||-.--... +. +-|| | ..+.+|++.+
T Consensus 8 ~~~~~~Q~~ai~----~l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~------~~--p~Lvi~~n~~~A~ql~~el 74 (655)
T TIGR00631 8 FQPAGDQPKAIA----KLVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQV------NR--PTLVIAHNKTLAAQLYNEF 74 (655)
T ss_pred CCCChHHHHHHH----HHHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHh------CC--CEEEEECCHHHHHHHHHHH
Confidence 455555554333 3455554553222 378999999999986532210 00 1122 1 2445677766
Q ss_pred hhc-cceeEEEEEeehhhchHHh
Q psy9448 98 RLL-GDAEFTVRVSFLEIYNEEL 119 (583)
Q Consensus 98 ~~~-~~~~~~v~vS~~EIyne~v 119 (583)
+.. ++..+...|||+..|.-+.
T Consensus 75 ~~f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 75 KEFFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred HHhCCCCeEEEEeeecccCCccc
Confidence 654 4445778899998886543
No 225
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=51.06 E-value=4.8 Score=38.73 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=14.8
Q ss_pred cceeEEEeeccCCCceEEee
Q psy9448 47 YNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 47 ~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.-..+|..||.|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34678899999999987763
No 226
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=50.98 E-value=6.9 Score=40.02 Aligned_cols=21 Identities=33% Similarity=0.706 Sum_probs=18.2
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|++-+||..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999998643
No 227
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=50.79 E-value=6.1 Score=41.25 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=19.6
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 417 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 417 ~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
.++..++.+ ...|+-.|.||||||.+|-
T Consensus 135 ~~L~~~v~~-~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDS-RLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 445554443 2458899999999997773
No 228
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=50.68 E-value=8.1 Score=37.57 Aligned_cols=20 Identities=45% Similarity=0.527 Sum_probs=13.7
Q ss_pred cceeEEEeeccCCCceEEee
Q psy9448 426 YNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 426 ~n~~i~ayGqtgsGKT~Tm~ 445 (583)
.+-.+++.|+.|||||+.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 44578999999999997654
No 229
>KOG2373|consensus
Probab=50.65 E-value=14 Score=38.50 Aligned_cols=28 Identities=39% Similarity=0.693 Sum_probs=21.6
Q ss_pred hhHHHHhcccc---eeEEEeeccCCCceEEee
Q psy9448 38 PLIDEVLSGYN---CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 38 plv~~~l~G~n---~~i~ayGqtgSGKT~Tm~ 66 (583)
|.+...+.|.- -||++ |+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEeh
Confidence 67777887764 56665 999999998774
No 230
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.55 E-value=6.3 Score=40.70 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=13.6
Q ss_pred eeEEEeeccCCCceEE
Q psy9448 49 CTVFAYGQTGTGKTFT 64 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~T 64 (583)
+-|+..||||||||+.
T Consensus 98 SNILLiGPTGsGKTlL 113 (408)
T COG1219 98 SNILLIGPTGSGKTLL 113 (408)
T ss_pred ccEEEECCCCCcHHHH
Confidence 5689999999999953
No 231
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=50.10 E-value=3.8 Score=35.20 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=12.5
Q ss_pred EEEeeccCCCceEEe
Q psy9448 430 VFAYGQTGTGKTFTM 444 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm 444 (583)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 467999999999555
No 232
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=50.10 E-value=9.6 Score=41.76 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=19.6
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEE
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFT 64 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~T 64 (583)
..+..+++|.| ++..++||||||.+
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 34666778987 67788999999965
No 233
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=50.02 E-value=7.2 Score=39.06 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.5
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 427 NCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~ 445 (583)
...++-+|+.|+|||+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4567889999999997664
No 234
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=50.02 E-value=6.6 Score=35.02 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=13.3
Q ss_pred EEEeeccCCCceEEee
Q psy9448 430 VFAYGQTGTGKTFTME 445 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm~ 445 (583)
|+..|..|||||+...
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999996653
No 235
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=49.63 E-value=6.8 Score=37.20 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=20.3
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 415 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 415 ~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
..+++..++.. ...+.-.|++|||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34455555543 3457788999999997653
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=49.62 E-value=6.3 Score=39.68 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=22.6
Q ss_pred EEEeehhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 29 VDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 29 ~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
..++... ..+++.+-+ ...++-||++|+||||...+
T Consensus 89 ~~~l~~~-~~~~~~~~~--~~nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 89 KKALEDL-ASLVEFFER--GENLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred HHHHHHH-HHHHHHhcc--CCcEEEECCCCCcHHHHHHH
Confidence 3344433 334444433 34467899999999998864
No 237
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=49.56 E-value=5.9 Score=38.23 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=13.0
Q ss_pred eEEEeeccCCCceEEeec
Q psy9448 429 TVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~G 446 (583)
..+..|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 456689999999987754
No 238
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=49.11 E-value=5.2 Score=30.99 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=12.3
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999655
No 239
>PRK06921 hypothetical protein; Provisional
Probab=48.82 E-value=6.9 Score=39.69 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.5
Q ss_pred ceeEEEeeccCCCceEEeecc
Q psy9448 427 NCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
.-.++-||++|+||||.+..-
T Consensus 117 ~~~l~l~G~~G~GKThLa~ai 137 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAA 137 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 456899999999999988653
No 240
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=48.58 E-value=11 Score=35.77 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=19.6
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..++.+++|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 45566667877 577789999999763
No 241
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=48.56 E-value=6.3 Score=40.46 Aligned_cols=200 Identities=19% Similarity=0.264 Sum_probs=95.6
Q ss_pred eEEEeeccCCCceEEeecc----cCCCC-CCCcccCCCCccchhhhhHHHHH-Hhh-c----ccee----------EEEE
Q psy9448 50 TVFAYGQTGTGKTFTMEGE----KSNDP-SISWQDDPLSGIVPRAMNHLFDE-LRL-L----GDAE----------FTVR 108 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~G~----~~~~~-~~~~~~~~~~Giipr~~~~lf~~-~~~-~----~~~~----------~~v~ 108 (583)
-...||+|||||++.+-.- --+|. ..-..--|+.|+||--=...++. +.+ + ++.. --|.
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv~ 168 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFVE 168 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccccccee
Confidence 3456999999999876421 11111 00011234578888654444431 211 1 1111 1266
Q ss_pred EeehhhchHHhhhhcCCCCccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhh---hhHHHHhhhcccCc
Q psy9448 109 VSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKR---QTAATLMNAHSSRS 185 (583)
Q Consensus 109 vS~~EIyne~v~DLL~~~~~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R---~~~~t~~n~~SSRS 185 (583)
++|=|.-.++=+|.-+|.+ +......+|-+.| =++|+|+-|-.+..-- +....+...++.+.
T Consensus 169 msy~e~t~~~NldI~~p~N------iF~~Aa~~GPiaI---------ImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~C 233 (369)
T PF02456_consen 169 MSYDEATSPENLDITNPNN------IFAQAAKKGPIAI---------IMDECMEKLGSHKSISKFFHALPSKLHDRFPKC 233 (369)
T ss_pred ecHhhhCCccccCCCCchH------HHHHHHhcCCEEE---------EhHHHHHHhcCCCChhHHHhcCcHHHhhhccCC
Confidence 7777766666677655533 1112222333333 2688888775442211 12223333444444
Q ss_pred eeEEEEEEEe-e----cCCCChhhHhhccCceeeeccCCcccCccchhhhhhhhhcCcchhhhhhhhHHHHHhhhCCCCC
Q psy9448 186 HTIFTITIHI-K----DNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIP 260 (583)
Q Consensus 186 H~i~~i~i~~-~----~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~In~SL~~L~~vi~aL~~~~~~ip 260 (583)
+....+.|-. . +...+-..+...+|++++ |-+.. -+.|.+.|..-+.+-
T Consensus 234 Tgy~VfVVLHNmnPR~d~gGNI~~LKiqAK~HIi----Sp~~~------------------p~QlsRFin~yt~gl---- 287 (369)
T PF02456_consen 234 TGYYVFVVLHNMNPRRDIGGNIANLKIQAKCHII----SPKMH------------------PSQLSRFINNYTKGL---- 287 (369)
T ss_pred ceeEEEEEeccCCcccccCCCccchhhhceeeee----cCCCC------------------HHHHHHHHHHhccCC----
Confidence 4433333221 1 111122334445677766 22211 245666666554332
Q ss_pred cchhhHhHHhhhhcC---Ccc-eeeEEEEeCccccc
Q psy9448 261 YRESKLTRLLQDSLG---GRT-KTSIIATVSPAQLN 292 (583)
Q Consensus 261 yR~SkLT~lL~d~Lg---gn~-~t~~I~~vsp~~~~ 292 (583)
.+.|+-||+|.+. -|+ ..-+|-+..|..+.
T Consensus 288 --p~~i~~LLKdif~~~~~n~~ysWiiYnt~P~~es 321 (369)
T PF02456_consen 288 --PTAISLLLKDIFNHHQQNSKYSWIIYNTDPVSES 321 (369)
T ss_pred --ChhHHHHHHHHHHHHHhcCCccEEEecCCCCccc
Confidence 2567888888875 344 34456666665443
No 242
>PTZ00424 helicase 45; Provisional
Probab=48.22 E-value=10 Score=40.43 Aligned_cols=26 Identities=42% Similarity=0.643 Sum_probs=20.1
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456677889885 46789999999764
No 243
>KOG3859|consensus
Probab=48.13 E-value=8.7 Score=38.80 Aligned_cols=34 Identities=26% Similarity=0.579 Sum_probs=26.3
Q ss_pred eehhhhhhHH-HHhcccceeEEEeeccCCCceEEe
Q psy9448 32 YKYVVNPLID-EVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 32 y~~~~~plv~-~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
|+..-..||. ++-+||.--|+|.|.||.|||..|
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 3444455666 455899999999999999998765
No 244
>KOG2543|consensus
Probab=48.11 E-value=5.5 Score=42.05 Aligned_cols=17 Identities=47% Similarity=0.899 Sum_probs=14.7
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
.-|+-||.+||||||++
T Consensus 31 S~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV 47 (438)
T ss_pred eeEEEeccCCCchhHHH
Confidence 34689999999999987
No 245
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=47.97 E-value=5.4 Score=43.64 Aligned_cols=17 Identities=35% Similarity=0.853 Sum_probs=14.8
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.++-||++|+||||.+.
T Consensus 143 pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 36789999999999885
No 246
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=47.94 E-value=5 Score=38.60 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.1
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 429 TVFAYGQTGTGKTFTME 445 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~ 445 (583)
.++.+|.+|||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 67899999999998775
No 247
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=47.94 E-value=6.2 Score=36.74 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=12.9
Q ss_pred hcccceeEEEeeccCCCceEEee
Q psy9448 423 LSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 423 l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
..+....++-+|..|+|||+.+.
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHH
Confidence 35666789999999999997653
No 248
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.85 E-value=7.9 Score=40.63 Aligned_cols=34 Identities=38% Similarity=0.667 Sum_probs=21.4
Q ss_pred EEeehhhhhhHH-HHhc--ccc--eeEEEeeccCCCceE
Q psy9448 30 DVYKYVVNPLID-EVLS--GYN--CTVFAYGQTGTGKTF 63 (583)
Q Consensus 30 ~vy~~~~~plv~-~~l~--G~n--~~i~ayGqtgSGKT~ 63 (583)
++.+.+--||.+ ..|+ |.. --|+.||+.|+|||-
T Consensus 162 EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTL 200 (406)
T COG1222 162 EIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTL 200 (406)
T ss_pred HHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHH
Confidence 444455555544 2332 444 358999999999983
No 249
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=47.62 E-value=6.7 Score=40.55 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.5
Q ss_pred ccceeEEEeeccCCCceEEe
Q psy9448 425 GYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 425 G~n~~i~ayGqtgsGKT~Tm 444 (583)
.-+.+|.-+|+.|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45788999999999999877
No 250
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=47.60 E-value=9.8 Score=36.63 Aligned_cols=25 Identities=40% Similarity=0.575 Sum_probs=18.4
Q ss_pred HHHhccc---ceeEEEeeccCCCceEEe
Q psy9448 41 DEVLSGY---NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 41 ~~~l~G~---n~~i~ayGqtgSGKT~Tm 65 (583)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455443 577889999999998654
No 251
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=47.15 E-value=9.2 Score=41.66 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=20.8
Q ss_pred hhhhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 34 YVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 34 ~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..+..++..+..|-|. +-||++|+|||+..
T Consensus 182 ~~le~l~~~L~~~~~i--il~GppGtGKT~lA 211 (459)
T PRK11331 182 TTIETILKRLTIKKNI--ILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 3455566666566544 55999999999766
No 252
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=46.91 E-value=7.3 Score=41.63 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=16.2
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 48 NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm 65 (583)
..-|.-.||||-|||.|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 667788899999999999
No 253
>KOG0335|consensus
Probab=46.82 E-value=5.7 Score=43.24 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=15.8
Q ss_pred EEEeeccCCCceEEeecc
Q psy9448 51 VFAYGQTGTGKTFTMEGE 68 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm~G~ 68 (583)
++|++|||||||+...++
T Consensus 114 l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 114 LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred eEEEccCCCcchHHHHHH
Confidence 589999999999988764
No 254
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=46.70 E-value=6.6 Score=45.54 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.4
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.+.|.||+..|.+|||||.+.
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHH
T ss_pred cccccceeeccccccccccch
Confidence 689999999999999999874
No 255
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=45.71 E-value=13 Score=36.50 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=23.5
Q ss_pred hhhhHHHHhcc---cceeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSG---YNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G---~n~~i~ayGqtgSGKT~Tm 65 (583)
+-|-+|.++.| ....+.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 34567888876 5577889999999999765
No 256
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=45.68 E-value=17 Score=42.08 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=26.5
Q ss_pred hhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 35 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 35 ~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
++..+++++-+|.+-.+++. .||||||+|-+-
T Consensus 173 AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred HHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 36778889999999976665 699999999863
No 257
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=45.66 E-value=7.6 Score=39.51 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.5
Q ss_pred cceeEEEeeccCCCceEEeec
Q psy9448 426 YNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 426 ~n~~i~ayGqtgsGKT~Tm~G 446 (583)
.+..++.-|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 567788889999999999965
No 258
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=45.62 E-value=5.4 Score=42.83 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=14.9
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 427 NCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm 444 (583)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 356899999999999764
No 259
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=45.32 E-value=6.6 Score=41.67 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=15.2
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
..++-||++|+|||++.-
T Consensus 157 ~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999998773
No 260
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=45.02 E-value=8.6 Score=39.74 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=13.5
Q ss_pred ceeEEEeeccCCCceE
Q psy9448 427 NCTVFAYGQTGTGKTF 442 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~ 442 (583)
-+.|+-.|+||||||+
T Consensus 97 KSNILLiGPTGsGKTl 112 (408)
T COG1219 97 KSNILLIGPTGSGKTL 112 (408)
T ss_pred eccEEEECCCCCcHHH
Confidence 3568899999999985
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=44.81 E-value=10 Score=39.35 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=18.9
Q ss_pred HHHHhc-ccceeEEEeeccCCCceEEeec
Q psy9448 40 IDEVLS-GYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 40 v~~~l~-G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
+..++. |.-..++-||++|+|||++...
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 344443 3333467799999999998853
No 262
>PRK10536 hypothetical protein; Provisional
Probab=44.71 E-value=12 Score=37.70 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=26.5
Q ss_pred ccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 394 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 394 ~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
.|.|..+-+-+..|... +..+.+ +.-++..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~--------l~al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHY--------LKAIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHH--------HHHHhc--CCeEEEECCCCCCHHHHHH
Confidence 35555566665555432 222333 3478999999999997653
No 263
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=44.62 E-value=13 Score=40.34 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=20.7
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 45667778887 788899999999763
No 264
>KOG0340|consensus
Probab=44.43 E-value=19 Score=37.70 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=23.7
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 68 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G~ 68 (583)
..|..+|+|.+| +....||||||..+-.+
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 457788999998 56678999999988664
No 265
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=44.34 E-value=35 Score=31.93 Aligned_cols=100 Identities=24% Similarity=0.396 Sum_probs=55.8
Q ss_pred cccceeEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHHHHHHhhccceeEEEEEeehhhchHHhh-hhc
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELI-DLL 123 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~v~vS~~EIyne~v~-DLL 123 (583)
..++..|+-+|.+||||+.. -|++ .+.... .+..| |.|.+-.+..|.+- .|+
T Consensus 19 a~~~~pVlI~GE~GtGK~~l----------------------A~~I---H~~s~r-~~~pf-i~vnc~~~~~~~~e~~LF 71 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL----------------------ARAI---HNNSPR-KNGPF-ISVNCAALPEELLESELF 71 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH----------------------HHHH---HHCSTT-TTS-E-EEEETTTS-HHHHHHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHH----------------------HHHH---HHhhhc-ccCCe-EEEehhhhhcchhhhhhh
Confidence 47889999999999999532 2333 322221 22222 55555555555443 344
Q ss_pred CCCC------ccceEEeeeccccccceEEeccceeeecchhHHHHHHHhcchhhh
Q psy9448 124 SPTD------DITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172 (583)
Q Consensus 124 ~~~~------~~~~l~i~~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~ 172 (583)
.... .....-..+. ...|.+++.++.......-..++++|+.+.-.|.
T Consensus 72 G~~~~~~~~~~~~~~G~l~~-A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~ 125 (168)
T PF00158_consen 72 GHEKGAFTGARSDKKGLLEQ-ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRL 125 (168)
T ss_dssp EBCSSSSTTTSSEBEHHHHH-TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECC
T ss_pred ccccccccccccccCCceee-ccceEEeecchhhhHHHHHHHHHHHHhhchhccc
Confidence 3211 1111112222 2367889999999998888889999987755443
No 266
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=44.30 E-value=28 Score=36.82 Aligned_cols=31 Identities=13% Similarity=0.188 Sum_probs=19.7
Q ss_pred hcceEEeecchHHHHHHHHhhhhceeccCCC
Q psy9448 534 KNGVFLAAENYDQMVNELYAEVTSVEKKSSS 564 (583)
Q Consensus 534 ~~~~~~~~~~~~~~v~~~~e~~~~l~~g~~~ 564 (583)
.+|.+...+..+....-+...+..+++|+..
T Consensus 236 NrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~ 266 (361)
T smart00763 236 NRGILEFVEMFKADIKFLHPLLTATQEGNIK 266 (361)
T ss_pred cCceEEEeehhcCCHHHHHHHhhhhhcceEe
Confidence 3455555666666667777777777766653
No 267
>PRK06547 hypothetical protein; Provisional
Probab=44.20 E-value=14 Score=34.82 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=17.4
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.+..+..+-.--|..+|.+|||||+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 344444444445666799999999543
No 268
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=44.12 E-value=7 Score=41.19 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.1
Q ss_pred ceeEEEeeccCCCceEEeec
Q psy9448 427 NCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G 446 (583)
...|+..|.||||||.+|..
T Consensus 162 ~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred CCeEEEECCCCccHHHHHHH
Confidence 45688999999999977643
No 269
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.92 E-value=15 Score=37.40 Aligned_cols=26 Identities=42% Similarity=0.593 Sum_probs=18.7
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
+++..+.. +--++-.|++|||||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 44444433 556788999999998766
No 270
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=43.50 E-value=10 Score=38.99 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=18.5
Q ss_pred HHHHh-cccceeEEEeeccCCCceEEe
Q psy9448 40 IDEVL-SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 40 v~~~l-~G~n~~i~ayGqtgSGKT~Tm 65 (583)
+...+ .|...-++-||+.|+|||+++
T Consensus 29 l~~~i~~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 29 LKSYVKEKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 33444 444445788999999999877
No 271
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=43.24 E-value=11 Score=39.95 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=46.5
Q ss_pred cccccccccccccccceeehhhhhhhHHHHhc----ccceeEEEeeccCCCceEEe------eccccCCCCcccccCCCC
Q psy9448 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLS----GYNCTVFAYGQTGTGKTFTM------EGEKSNDPSISWQDDPLS 462 (583)
Q Consensus 393 k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~----G~n~~i~ayGqtgsGKT~Tm------~G~~~~~~~~~~~~~~~~ 462 (583)
+.+.||.+.+.----..+.+..+..+.+..+. ...--+.-||+.|+|||+.. +|-.--.-....--+...
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 45666766555444444455555566666653 23345778999999998652 111000000000112234
Q ss_pred ccchhhhhhhhHHhhc
Q psy9448 463 GIVPRAMNHLFDELRL 478 (583)
Q Consensus 463 Giipr~~~~lf~~~~~ 478 (583)
|=--+.++++|.....
T Consensus 190 GEsEk~IR~~F~~A~~ 205 (413)
T PLN00020 190 GEPGKLIRQRYREAAD 205 (413)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6667788888876643
No 272
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=43.18 E-value=11 Score=43.48 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=21.6
Q ss_pred hhhhHHHHhc-----ccceeEEEeeccCCCceEEeec
Q psy9448 36 VNPLIDEVLS-----GYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 36 ~~plv~~~l~-----G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
+..+++++.+ |.+..++. -+||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHH
Confidence 5666777665 34455544 4899999999964
No 273
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=43.16 E-value=10 Score=35.65 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=14.0
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 428 CTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~Tm 444 (583)
+.++-+|++|+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999643
No 274
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=43.13 E-value=10 Score=34.99 Aligned_cols=28 Identities=36% Similarity=0.447 Sum_probs=18.9
Q ss_pred HHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 419 v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
+..++++. ..++..|++|||||.++...
T Consensus 17 ~~~~~~~~-~~~~i~~~~GsGKT~~~~~~ 44 (201)
T smart00487 17 IEALLSGL-RDVILAAPTGSGKTLAALLP 44 (201)
T ss_pred HHHHHcCC-CcEEEECCCCCchhHHHHHH
Confidence 34444432 45677899999999877654
No 275
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=43.00 E-value=9.4 Score=35.79 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=12.8
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+.+|++|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999998753
No 276
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=42.95 E-value=12 Score=43.53 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.1
Q ss_pred cccceeEEEeeccCCCceEEeec
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
.+.-..++-||++|+|||++...
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 45455788899999999987753
No 277
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=42.92 E-value=8.2 Score=38.79 Aligned_cols=53 Identities=23% Similarity=0.257 Sum_probs=28.2
Q ss_pred ceeEEEeeccCCCceEEeeccccCCCCc------ccccCCCCccchhhhhhhhHHhhcc
Q psy9448 427 NCTVFAYGQTGTGKTFTMEGEKSNDPSI------SWQDDPLSGIVPRAMNHLFDELRLL 479 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G~~~~~~~~------~~~~~~~~Giipr~~~~lf~~~~~~ 479 (583)
.-+|+-||++|+|||++----.+....+ ..--....|=-.|-+++||.+.++.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~ 209 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKA 209 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 4578999999999985432211110000 0001112345567778888766543
No 278
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=42.91 E-value=12 Score=33.37 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=12.5
Q ss_pred EEEeeccCCCceEEe
Q psy9448 430 VFAYGQTGTGKTFTM 444 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm 444 (583)
|+-+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999544
No 279
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=42.67 E-value=14 Score=38.91 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=18.0
Q ss_pred cccceeEEEeeccCCCceE
Q psy9448 45 SGYNCTVFAYGQTGTGKTF 63 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~ 63 (583)
.|+.-+||+.|++|+|||.
T Consensus 20 ~Gi~f~im~~G~sG~GKtt 38 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTT 38 (373)
T ss_pred cCCceEEEEecCCCCchhH
Confidence 6999999999999999996
No 280
>KOG0729|consensus
Probab=42.62 E-value=12 Score=37.67 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=28.8
Q ss_pred ccc--eeEEEeeccCCCceEEeecccCCCCCCCcc-------cCCCCccchhhhhHHHHHHhhc
Q psy9448 46 GYN--CTVFAYGQTGTGKTFTMEGEKSNDPSISWQ-------DDPLSGIVPRAMNHLFDELRLL 100 (583)
Q Consensus 46 G~n--~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~-------~~~~~Giipr~~~~lf~~~~~~ 100 (583)
|.. -.|+.||+.|+|||-.--.-.... ...+. -...-|==.|.+.+||+.....
T Consensus 207 gidppkgvllygppgtgktl~aravanrt-dacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRT-DACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhccc-CceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 544 358999999999985432111000 00000 0001133358889999876643
No 281
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=42.51 E-value=9.8 Score=39.77 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=19.1
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 417 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 417 ~~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.++..+..+. |.|+..|-||||||.++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444444444 78999999999999554
No 282
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=42.48 E-value=9.7 Score=34.42 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.5
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+..|++|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577899999998764
No 283
>KOG2543|consensus
Probab=42.30 E-value=8.5 Score=40.70 Aligned_cols=19 Identities=42% Similarity=0.777 Sum_probs=15.6
Q ss_pred cceeEEEeeccCCCceEEe
Q psy9448 426 YNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 426 ~n~~i~ayGqtgsGKT~Tm 444 (583)
+...|+-||.+||||||++
T Consensus 29 ~PS~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 29 IPSIVHIYGHSGTGKTYLV 47 (438)
T ss_pred cceeEEEeccCCCchhHHH
Confidence 3445699999999999876
No 284
>PF13173 AAA_14: AAA domain
Probab=42.29 E-value=7.8 Score=34.27 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.1
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
-.++-+|+.|+|||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLK 20 (128)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357889999999998873
No 285
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.16 E-value=15 Score=40.19 Aligned_cols=26 Identities=46% Similarity=0.586 Sum_probs=20.5
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..+..+++|.| +++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45667788987 577789999999764
No 286
>PF05729 NACHT: NACHT domain
Probab=42.15 E-value=8.2 Score=35.04 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=13.9
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999877
No 287
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=42.03 E-value=8.7 Score=39.36 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=23.8
Q ss_pred ehhhhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 33 KYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 33 ~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
-..+.||+ ..+.--+..+-.||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 33456666 455666678889999999999766
No 288
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.97 E-value=14 Score=40.05 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=20.0
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
+...+-.+.-..++-||++|+|||+...
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 4433445555577889999999997763
No 289
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=41.82 E-value=7.4 Score=38.08 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.2
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
+.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999766
No 290
>PRK07261 topology modulation protein; Provisional
Probab=41.81 E-value=10 Score=35.57 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.6
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+..|.+|||||+..
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998655
No 291
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=41.79 E-value=11 Score=37.19 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=17.4
Q ss_pred ceeEEEeeccCCCceEEeecc
Q psy9448 48 NCTVFAYGQTGTGKTFTMEGE 68 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~G~ 68 (583)
...++-||++|+|||++.-.-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 356899999999999987554
No 292
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=41.78 E-value=14 Score=39.42 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.1
Q ss_pred EEEeeccCCCceEEee
Q psy9448 51 VFAYGQTGTGKTFTME 66 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm~ 66 (583)
++..|+||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999875
No 293
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.71 E-value=8.1 Score=39.53 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=13.7
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 429 TVFAYGQTGTGKTFTME 445 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~ 445 (583)
.+.-.|++|+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999998874
No 294
>PHA01747 putative ATP-dependent protease
Probab=41.70 E-value=9.5 Score=40.28 Aligned_cols=32 Identities=28% Similarity=0.331 Sum_probs=26.0
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 36 ~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
.-|+|+.-..+-|.-++=.|+.||||||+..-
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~e 209 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFVI 209 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHHH
Confidence 45777766677888899999999999998743
No 295
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=41.70 E-value=17 Score=41.93 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.6
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 699999999999999999876
No 296
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=41.51 E-value=18 Score=35.24 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=22.9
Q ss_pred hhhhHHHHhccc---ceeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSGY---NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G~---n~~i~ayGqtgSGKT~Tm 65 (583)
+-|-+|.++.|- ...+.-+|++|||||...
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 446678888543 457889999999998765
No 297
>PRK04195 replication factor C large subunit; Provisional
Probab=41.45 E-value=15 Score=40.61 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=20.6
Q ss_pred hhhHHHHhccc-ceeEEEeeccCCCceEEe
Q psy9448 37 NPLIDEVLSGY-NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 37 ~plv~~~l~G~-n~~i~ayGqtgSGKT~Tm 65 (583)
..++.....|. .-.++.||++|+|||++.
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34444444554 457889999999999877
No 298
>KOG1803|consensus
Probab=41.40 E-value=13 Score=41.52 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=18.6
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.|.-++.-. -..+--||+|+|||||+.
T Consensus 193 Av~~~~~~k-~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 193 AVSFAINNK-DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred HHHHHhccC-CceEeeCCCCCCceeeHH
Confidence 343333333 456678999999999994
No 299
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=41.37 E-value=17 Score=35.91 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=25.2
Q ss_pred cccccccceeehhhhhhhHHHHhc--ccceeEEEeeccCCCce
Q psy9448 401 FSQESKQVDVYKYVVNPLIDEVLS--GYNCTVFAYGQTGTGKT 441 (583)
Q Consensus 401 f~~~~~q~~vy~~~~~~~v~~~l~--G~n~~i~ayGqtgsGKT 441 (583)
|++...|+++-.. .+.+++.+.. ..-..++-||+.|.|||
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKT 64 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKT 64 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchh
Confidence 4455667777665 3666776653 23357899999999998
No 300
>PRK00131 aroK shikimate kinase; Reviewed
Probab=41.36 E-value=11 Score=34.70 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.6
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
..|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 46899999999999774
No 301
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=41.25 E-value=15 Score=39.66 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=19.5
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..+..+++|.|. ++-++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 345667889874 56679999999753
No 302
>PRK08118 topology modulation protein; Reviewed
Probab=41.10 E-value=11 Score=35.35 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=11.6
Q ss_pred EEEeeccCCCceE
Q psy9448 51 VFAYGQTGTGKTF 63 (583)
Q Consensus 51 i~ayGqtgSGKT~ 63 (583)
|+..|++|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 6788999999995
No 303
>KOG0739|consensus
Probab=41.06 E-value=11 Score=38.70 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=29.9
Q ss_pred hhhcccCCceEEEeehhhhhh-HHHHhcccc---eeEEEeeccCCCceEEe
Q psy9448 19 FLVCIFYTTIVDVYKYVVNPL-IDEVLSGYN---CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 19 D~Vf~~~~tq~~vy~~~~~pl-v~~~l~G~n---~~i~ayGqtgSGKT~Tm 65 (583)
+.|-+-+..-+.+=+.++-|+ ..++|.|.- ..|+.||+.|+||+|.-
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 334444333334445555555 346776654 67999999999999854
No 304
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=40.99 E-value=12 Score=43.01 Aligned_cols=28 Identities=32% Similarity=0.299 Sum_probs=19.7
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
.|..++..- ..++..|++|||||+|+..
T Consensus 165 Av~~~l~~~-~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 165 AVSFALSSK-DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHHhcCC-CeEEEEcCCCCCHHHHHHH
Confidence 355555432 3456899999999999964
No 305
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=40.99 E-value=12 Score=38.23 Aligned_cols=19 Identities=37% Similarity=0.775 Sum_probs=17.1
Q ss_pred cccceeEEEeeccCCCceE
Q psy9448 424 SGYNCTVFAYGQTGTGKTF 442 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~ 442 (583)
.|++-+|+..|++|+|||.
T Consensus 1 kg~~fnImVvG~sG~GKTT 19 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTT 19 (281)
T ss_dssp HEEEEEEEEEECTTSSHHH
T ss_pred CCceEEEEEECCCCCCHHH
Confidence 4888999999999999994
No 306
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=40.97 E-value=9.7 Score=39.16 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=13.3
Q ss_pred EEEeeccCCCceEEee
Q psy9448 430 VFAYGQTGTGKTFTME 445 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm~ 445 (583)
...||+|||||++-+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4679999999998764
No 307
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=40.89 E-value=13 Score=32.09 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=11.5
Q ss_pred EEEeeccCCCceEE
Q psy9448 430 VFAYGQTGTGKTFT 443 (583)
Q Consensus 430 i~ayGqtgsGKT~T 443 (583)
|+-.|.+|||||..
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 56789999999943
No 308
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=40.73 E-value=16 Score=35.99 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=22.8
Q ss_pred hhhhHHHHhccc---ceeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSGY---NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G~---n~~i~ayGqtgSGKT~Tm 65 (583)
+-|-+|.++.|- ..+++.+|.+|||||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 446678888643 677888899999998654
No 309
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=40.47 E-value=11 Score=33.97 Aligned_cols=16 Identities=38% Similarity=0.679 Sum_probs=13.4
Q ss_pred EEEeeccCCCceEEee
Q psy9448 51 VFAYGQTGTGKTFTME 66 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm~ 66 (583)
++-+|++|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4678999999998763
No 310
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=40.42 E-value=12 Score=38.92 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.9
Q ss_pred cccceeEEEeeccCCCceEEee
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
..-+.-++-||+.|||||.+|.
T Consensus 20 ~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 20 SSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cCCceEEEEECCCCCCHHHHHH
Confidence 4566779999999999999984
No 311
>PRK13764 ATPase; Provisional
Probab=40.42 E-value=11 Score=42.80 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=16.9
Q ss_pred cceeEEEeeccCCCceEEeec
Q psy9448 426 YNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 426 ~n~~i~ayGqtgsGKT~Tm~G 446 (583)
....|+..|+||||||+++..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 345589999999999988743
No 312
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.39 E-value=8.6 Score=41.24 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=16.1
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 427 NCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~ 445 (583)
...|+.+|+||+|||.|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578889999999998884
No 313
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=40.37 E-value=11 Score=46.11 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=20.4
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~G 67 (583)
..+++.+-+|....++. -+||||||+|+.+
T Consensus 423 ~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 423 QAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 33444445676554444 8999999999875
No 314
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=40.29 E-value=16 Score=42.10 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.4
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.+.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 699999999999999999775
No 315
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=40.08 E-value=9.4 Score=33.05 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=13.9
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
..+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34667899999999876
No 316
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=39.94 E-value=12 Score=38.64 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=19.9
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.+++..++.+. ..++-.|+||||||..|-
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 34555555443 456677999999999763
No 317
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=39.91 E-value=18 Score=41.83 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.6
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 699999999999999999875
No 318
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=39.91 E-value=19 Score=41.58 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=19.6
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.+.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 699999999999999999876
No 319
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=39.89 E-value=9.9 Score=38.24 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.3
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 427 NCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~ 445 (583)
...++-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3457889999999997763
No 320
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=39.85 E-value=16 Score=41.72 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=23.6
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.+.++..+..++...++-||++|+|||+..
T Consensus 163 ~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 163 IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 344566666688888999999999999866
No 321
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=39.84 E-value=12 Score=41.76 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred hhhhHHHHhcccc--eeEEEeeccCCCceEEe
Q psy9448 415 VNPLIDEVLSGYN--CTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 415 ~~~~v~~~l~G~n--~~i~ayGqtgsGKT~Tm 444 (583)
|+..++..+.|.. .-++-+|++|||||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 4555666555543 45788999999999887
No 322
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=39.65 E-value=9.5 Score=41.46 Aligned_cols=18 Identities=44% Similarity=0.514 Sum_probs=15.2
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
..|+..|++|+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 367777999999999985
No 323
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=39.47 E-value=11 Score=43.61 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.8
Q ss_pred hcccceeEEEeeccCCCceEEe
Q psy9448 423 LSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 423 l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
..+.|.||+..|.+|||||.++
T Consensus 81 ~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 81 RTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHTSEEEEEEEESTTSSHHHHH
T ss_pred ccccccceeeccccccccccch
Confidence 4589999999999999999884
No 324
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=39.30 E-value=18 Score=37.25 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=16.6
Q ss_pred ccc-ceeEEEeeccCCCceEEeec
Q psy9448 424 SGY-NCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 424 ~G~-n~~i~ayGqtgsGKT~Tm~G 446 (583)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 443 34566699999999987643
No 325
>CHL00181 cbbX CbbX; Provisional
Probab=39.30 E-value=11 Score=38.54 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=13.3
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
++-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999876
No 326
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=39.27 E-value=12 Score=40.28 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=15.0
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 48 NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm 65 (583)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345899999999999765
No 327
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=39.08 E-value=12 Score=33.87 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.4
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
+|+.+|.+|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999998654
No 328
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=38.89 E-value=17 Score=42.01 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.5
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|-||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 689999999999999999875
No 329
>KOG0926|consensus
Probab=38.77 E-value=16 Score=42.18 Aligned_cols=18 Identities=44% Similarity=0.637 Sum_probs=15.1
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 48 NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm 65 (583)
|-.++.+|+||||||.-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 456777899999999877
No 330
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=38.55 E-value=18 Score=39.60 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=18.8
Q ss_pred hHHHHhcccceeEEEeeccCCCceEE
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFT 443 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~T 443 (583)
.+..+++|.+ ++..++||||||.+
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556678877 78888999999955
No 331
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=38.46 E-value=11 Score=35.53 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.9
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
+..+-||++|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45568899999999776
No 332
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=38.36 E-value=12 Score=38.37 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=14.3
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.++-||++|+|||+...
T Consensus 32 ~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAH 48 (305)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47789999999998773
No 333
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=38.33 E-value=10 Score=34.86 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=11.0
Q ss_pred EEEeeccCCCceEE
Q psy9448 51 VFAYGQTGTGKTFT 64 (583)
Q Consensus 51 i~ayGqtgSGKT~T 64 (583)
|+..|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999854
No 334
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=38.24 E-value=17 Score=42.06 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.5
Q ss_pred HHHHh-cccceeEEEeeccCCCceEEe
Q psy9448 40 IDEVL-SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 40 v~~~l-~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..+++ .|.|.||+.-|.+|||||.+.
T Consensus 77 y~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 77 YRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHHHhcCCCceEEEecCCCCCchHHH
Confidence 34444 599999999999999999775
No 335
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=38.22 E-value=11 Score=38.58 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=14.7
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 428 CTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~Tm~ 445 (583)
..++-||+.|+|||+...
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357789999999997763
No 336
>PHA02653 RNA helicase NPH-II; Provisional
Probab=38.16 E-value=20 Score=41.37 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=18.9
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEE
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFT 64 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~T 64 (583)
.++..+++|.+ ++..|+||||||..
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhH
Confidence 44556667765 48899999999975
No 337
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=38.14 E-value=14 Score=33.05 Aligned_cols=16 Identities=44% Similarity=0.540 Sum_probs=12.7
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.+--.|+||+||||+-
T Consensus 55 VlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFVS 70 (127)
T ss_pred EEEeecCCCCcHHHHH
Confidence 3456799999999864
No 338
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=38.12 E-value=19 Score=36.31 Aligned_cols=27 Identities=37% Similarity=0.488 Sum_probs=17.7
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
+.++..+..|. -|+-+|++|+|||...
T Consensus 12 ~~~l~~l~~g~--~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGY--PVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCC--eEEEEcCCCCCHHHHH
Confidence 33444444554 4566899999998765
No 339
>PHA02624 large T antigen; Provisional
Probab=38.09 E-value=18 Score=40.93 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=23.9
Q ss_pred hhhhHHHHhcccce--eEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSGYNC--TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G~n~--~i~ayGqtgSGKT~Tm 65 (583)
...+++.++.|... |++-||+.|||||+-.
T Consensus 417 ~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 417 IYDILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 34456777888777 9999999999998754
No 340
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=38.05 E-value=10 Score=36.48 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=14.4
Q ss_pred cceeEEEeeccCCCceEEee
Q psy9448 426 YNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 426 ~n~~i~ayGqtgsGKT~Tm~ 445 (583)
....++..||.|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34568899999999996653
No 341
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=37.82 E-value=14 Score=38.87 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=23.2
Q ss_pred hhhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 35 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 35 ~~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
-...++..++.+. ..|+..|.||||||.+|-
T Consensus 166 ~~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 166 GVARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 3456666666654 688889999999998764
No 342
>PRK04328 hypothetical protein; Provisional
Probab=37.78 E-value=21 Score=35.71 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=20.9
Q ss_pred hhhHHHHhcc---cceeEEEeeccCCCce
Q psy9448 416 NPLIDEVLSG---YNCTVFAYGQTGTGKT 441 (583)
Q Consensus 416 ~~~v~~~l~G---~n~~i~ayGqtgsGKT 441 (583)
-+-++.++.| ....++-+|.+|+|||
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT 37 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKS 37 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHH
Confidence 4456777765 4688999999999997
No 343
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.70 E-value=21 Score=39.32 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=20.8
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
...|..+++|.++ ++..+||||||.+.
T Consensus 17 ~~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 17 LEVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 4567788899974 55679999999653
No 344
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=37.70 E-value=14 Score=42.82 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.6
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 689999999999999999876
No 345
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=37.55 E-value=12 Score=38.99 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.3
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357889999999998874
No 346
>KOG0652|consensus
Probab=37.42 E-value=15 Score=36.91 Aligned_cols=14 Identities=57% Similarity=0.983 Sum_probs=12.1
Q ss_pred eEEEeeccCCCceE
Q psy9448 50 TVFAYGQTGTGKTF 63 (583)
Q Consensus 50 ~i~ayGqtgSGKT~ 63 (583)
.++.||+.|+|||-
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 48999999999963
No 347
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=37.26 E-value=10 Score=41.74 Aligned_cols=18 Identities=39% Similarity=0.407 Sum_probs=15.9
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
..|.-.|++|+|||.|+-
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 578889999999999984
No 348
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=37.07 E-value=13 Score=35.02 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.7
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+.+|++|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999998544
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=37.00 E-value=9.9 Score=39.89 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=18.7
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 417 PLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 417 ~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
.++..+..+ ...|+..|.||||||.+|-
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHHH
Confidence 344443332 3458889999999997663
No 350
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=36.84 E-value=17 Score=42.06 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.5
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 599999999999999999875
No 351
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.75 E-value=11 Score=40.17 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=16.0
Q ss_pred ceeEEEeeccCCCceEEeec
Q psy9448 427 NCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G 446 (583)
...+.-.|++|+|||+|+.-
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35677889999999988743
No 352
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=36.56 E-value=19 Score=41.68 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.4
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999765
No 353
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=36.55 E-value=19 Score=41.81 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.3
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 88 DRENQSILITGESGAGKTENT 108 (693)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999764
No 354
>KOG1547|consensus
Probab=36.53 E-value=24 Score=35.04 Aligned_cols=32 Identities=19% Similarity=0.575 Sum_probs=23.2
Q ss_pred hhhhhhHHHHh-cccceeEEEeeccCCCceEEe
Q psy9448 34 YVVNPLIDEVL-SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 34 ~~~~plv~~~l-~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.+...+=..++ .||.--||..||+|.|||..+
T Consensus 31 tI~~Qm~~k~mk~GF~FNIMVVgqSglgkstli 63 (336)
T KOG1547|consen 31 TIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLI 63 (336)
T ss_pred HHHHHHHHHHHhccCceEEEEEecCCCCchhhH
Confidence 33344434444 799999999999999997543
No 355
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=36.46 E-value=13 Score=39.35 Aligned_cols=46 Identities=30% Similarity=0.403 Sum_probs=29.1
Q ss_pred cccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 393 k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
..|.|+.|-+++. += .-++..+.+-.-+.|+-+|.+|||||+.+-+
T Consensus 12 ~~~pf~~ivGq~~----~k----~al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVGQEE----MK----LALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhChHH----HH----HHHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 4788888877642 22 2233333332224688999999999987754
No 356
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.29 E-value=21 Score=40.90 Aligned_cols=25 Identities=40% Similarity=0.635 Sum_probs=19.7
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.+..+++|.+ ++..+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4566778876 678889999999764
No 357
>PTZ00424 helicase 45; Provisional
Probab=36.26 E-value=20 Score=38.22 Aligned_cols=27 Identities=41% Similarity=0.628 Sum_probs=20.3
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
...+..+++|.+. +..++||||||.+.
T Consensus 56 ~~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 56 QRGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 3456667888874 56789999999754
No 358
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=36.06 E-value=16 Score=34.17 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.5
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999998644
No 359
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=36.06 E-value=14 Score=40.33 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=13.7
Q ss_pred EEEeeccCCCceEEee
Q psy9448 51 VFAYGQTGTGKTFTME 66 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm~ 66 (583)
++.||+.|||||....
T Consensus 201 Ll~~GpPGtGKTmla~ 216 (490)
T COG0606 201 LLLVGPPGTGKTMLAS 216 (490)
T ss_pred EEEecCCCCchHHhhh
Confidence 5789999999998774
No 360
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=35.93 E-value=11 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=14.0
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|+..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999887
No 361
>KOG3859|consensus
Probab=35.84 E-value=17 Score=36.87 Aligned_cols=27 Identities=33% Similarity=0.658 Sum_probs=22.3
Q ss_pred hHH-HHhcccceeEEEeeccCCCceEEe
Q psy9448 418 LID-EVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 418 ~v~-~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
+|. ++-+||.-.|+|.|.||.||+.-|
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 554 466899999999999999999544
No 362
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=35.81 E-value=14 Score=37.78 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=14.0
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
-++-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5888999999999765
No 363
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.73 E-value=16 Score=38.72 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=20.2
Q ss_pred hhhhHHHHhcc-cceeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSG-YNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G-~n~~i~ayGqtgSGKT~Tm 65 (583)
++.+...+-.| ..-+++-||+.|+|||++.
T Consensus 25 ~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 25 VTAISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred HHHHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 33344334444 4556889999999999865
No 364
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=35.71 E-value=20 Score=41.78 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.6
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 699999999999999999876
No 365
>PHA02244 ATPase-like protein
Probab=35.71 E-value=13 Score=39.50 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=15.1
Q ss_pred cccceeEEEeeccCCCceEEee
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.|.+ |+-+|++|+|||+...
T Consensus 118 ~~~P--VLL~GppGtGKTtLA~ 137 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIAE 137 (383)
T ss_pred cCCC--EEEECCCCCCHHHHHH
Confidence 4554 5568999999997663
No 366
>PRK14531 adenylate kinase; Provisional
Probab=35.59 E-value=15 Score=34.80 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=12.8
Q ss_pred eEEEeeccCCCceEE
Q psy9448 50 TVFAYGQTGTGKTFT 64 (583)
Q Consensus 50 ~i~ayGqtgSGKT~T 64 (583)
-|+.+|++|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999865
No 367
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=35.56 E-value=15 Score=39.59 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=15.4
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 48 NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm 65 (583)
...|+-||++|+|||+..
T Consensus 179 pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356889999999999876
No 368
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=35.55 E-value=26 Score=33.97 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=23.1
Q ss_pred hhhhHHHHhcc-c--ceeEEEeeccCCCceEEee
Q psy9448 36 VNPLIDEVLSG-Y--NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 36 ~~plv~~~l~G-~--n~~i~ayGqtgSGKT~Tm~ 66 (583)
+-|-+|.++.| + ...+.-+|++|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 34667888864 3 4567889999999998664
No 369
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=35.48 E-value=23 Score=33.57 Aligned_cols=24 Identities=46% Similarity=0.614 Sum_probs=18.0
Q ss_pred hHHHHhcccceeEEEeeccCCCceEE
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFT 443 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~T 443 (583)
.++.+++|.| ++..++||+|||.+
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHH
Confidence 4445556766 68889999999976
No 370
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=35.41 E-value=14 Score=40.39 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=31.7
Q ss_pred cccccccccccccccccceeehhhhhhhHHHH--hcc--cceeEEEeeccCCCceEEeec
Q psy9448 391 ISKTFGFDRVFSQESKQVDVYKYVVNPLIDEV--LSG--YNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 391 ~~k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~--l~G--~n~~i~ayGqtgsGKT~Tm~G 446 (583)
....|+||.-... .++...|.. +..+.+.. ..| || -++-||++|+||||-+..
T Consensus 104 l~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 104 LDPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CCccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 4567899876643 344434433 23333221 123 34 478899999999998754
No 371
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=35.40 E-value=25 Score=34.71 Aligned_cols=26 Identities=42% Similarity=0.701 Sum_probs=19.5
Q ss_pred hhHHHHhc-cc--ceeEEEeeccCCCceE
Q psy9448 38 PLIDEVLS-GY--NCTVFAYGQTGTGKTF 63 (583)
Q Consensus 38 plv~~~l~-G~--n~~i~ayGqtgSGKT~ 63 (583)
+-+|.++. |+ ..+++.+|++|||||.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 44677665 44 4778899999999974
No 372
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=35.39 E-value=20 Score=36.56 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=18.6
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 488999999999999998655
No 373
>PRK06217 hypothetical protein; Validated
Probab=35.39 E-value=15 Score=34.77 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.5
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999998643
No 374
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=35.36 E-value=26 Score=33.88 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=22.0
Q ss_pred hhhHHHHhc-ccc--eeEEEeeccCCCceEEee
Q psy9448 37 NPLIDEVLS-GYN--CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 37 ~plv~~~l~-G~n--~~i~ayGqtgSGKT~Tm~ 66 (583)
-+-+|.++. |+. ..+..+|++|||||....
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 345778885 544 458899999999997653
No 375
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=35.18 E-value=25 Score=37.22 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.1
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.++.+.+|.+..++...+||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 456777888878888899999999764
No 376
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=35.15 E-value=11 Score=37.16 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.7
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999766
No 377
>PRK06696 uridine kinase; Validated
Probab=34.95 E-value=24 Score=34.56 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=21.4
Q ss_pred hhhhhHHHHh---cccceeEEEeeccCCCceEEe
Q psy9448 35 VVNPLIDEVL---SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 35 ~~~plv~~~l---~G~n~~i~ayGqtgSGKT~Tm 65 (583)
+++.|.+.++ .+....|..-|.+|||||+..
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 3445555554 355567778899999998754
No 378
>KOG2373|consensus
Probab=34.75 E-value=35 Score=35.72 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=19.5
Q ss_pred CCCcchhhHhHHhhhhcCCcceeeEEEEe
Q psy9448 258 HIPYRESKLTRLLQDSLGGRTKTSIIATV 286 (583)
Q Consensus 258 ~ipyR~SkLT~lL~d~Lggn~~t~~I~~v 286 (583)
-.||-.-.|.+++=++|-.=-++.+-..+
T Consensus 147 ~LP~g~~~lP~~~LPyLE~F~~i~fWl~~ 175 (514)
T KOG2373|consen 147 ALPHGEILLPQLVLPYLEEFDKIYFWLPV 175 (514)
T ss_pred EcccccccCcHHHHHHHHhhheEEEEecc
Confidence 35777777777777777765566655544
No 379
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=34.70 E-value=21 Score=38.96 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=18.3
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
..++..+..|-| |+-||++|+|||+..
T Consensus 185 e~l~~~L~~~~~--iil~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKKN--IILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 444555555554 455999999999665
No 380
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.65 E-value=16 Score=40.59 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=17.5
Q ss_pred Hhccc-ceeEEEeeccCCCceEEe
Q psy9448 43 VLSGY-NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 43 ~l~G~-n~~i~ayGqtgSGKT~Tm 65 (583)
+..|. ...++-+|+.|+|||.+.
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHH
Confidence 34444 357889999999999775
No 381
>KOG0354|consensus
Probab=34.62 E-value=25 Score=40.49 Aligned_cols=44 Identities=25% Similarity=0.208 Sum_probs=29.5
Q ss_pred hhhcccCCceEEEeehh------hhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 19 FLVCIFYTTIVDVYKYV------VNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 19 D~Vf~~~~tq~~vy~~~------~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
++-+++++-|..+|..- -..++..+| |.|+.|.+ |||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 33455555566655443 235788889 99986655 9999999753
No 382
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=34.19 E-value=19 Score=30.73 Aligned_cols=15 Identities=33% Similarity=0.658 Sum_probs=12.8
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999765
No 383
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.13 E-value=18 Score=38.65 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=25.6
Q ss_pred ceEEEeehhhhhhHHHHhcccceeEEEeeccCCCceEE
Q psy9448 27 TIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFT 64 (583)
Q Consensus 27 tq~~vy~~~~~plv~~~l~G~n~~i~ayGqtgSGKT~T 64 (583)
-|+.+... ..|+=..+-.|.-.+.+-||+.|+|||..
T Consensus 28 GQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 28 GQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred ChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 34555544 34555455567778889999999999953
No 384
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=34.11 E-value=15 Score=40.67 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.2
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
-.++-||++|+|||+..-
T Consensus 89 ~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 358899999999998863
No 385
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=34.05 E-value=20 Score=38.20 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=25.6
Q ss_pred cccceeehhhhhhhHHHHhcccceeEEEeeccCCCce
Q psy9448 405 SKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKT 441 (583)
Q Consensus 405 ~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT 441 (583)
..|+.+... ..|+-.-+-.|.-.+.+-||+.|+|||
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKT 62 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKT 62 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHH
Confidence 345555544 355555555677788999999999999
No 386
>PRK08233 hypothetical protein; Provisional
Probab=33.99 E-value=16 Score=34.02 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=12.4
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|.--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999765
No 387
>KOG0354|consensus
Probab=33.94 E-value=42 Score=38.74 Aligned_cols=43 Identities=28% Similarity=0.416 Sum_probs=28.8
Q ss_pred ccccccccccceeehhhh------hhhHHHHhcccceeEEEeeccCCCceEE
Q psy9448 398 DRVFSQESKQVDVYKYVV------NPLIDEVLSGYNCTVFAYGQTGTGKTFT 443 (583)
Q Consensus 398 D~vf~~~~~q~~vy~~~~------~~~v~~~l~G~n~~i~ayGqtgsGKT~T 443 (583)
++-+++++-|..+|-.-+ ..+++.+| |.|+-| .=+||+|||+-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii--~lPTG~GKTfI 92 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTII--ALPTGSGKTFI 92 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEE--EeecCCCccch
Confidence 444566666666655433 34788889 999644 45899999974
No 388
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=33.87 E-value=18 Score=39.78 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=21.4
Q ss_pred HHHHhcccc------eeEEEeeccCCCceEEeec
Q psy9448 40 IDEVLSGYN------CTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 40 v~~~l~G~n------~~i~ayGqtgSGKT~Tm~G 67 (583)
+..+++|.+ -.|+-.|++|||||+.|-+
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 445677744 4477899999999999974
No 389
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.84 E-value=18 Score=38.13 Aligned_cols=46 Identities=26% Similarity=0.479 Sum_probs=29.8
Q ss_pred ccccccccccccceeehhhhhhhHHH-Hhc--ccc--eeEEEeeccCCCce
Q psy9448 396 GFDRVFSQESKQVDVYKYVVNPLIDE-VLS--GYN--CTVFAYGQTGTGKT 441 (583)
Q Consensus 396 ~fD~vf~~~~~q~~vy~~~~~~~v~~-~l~--G~n--~~i~ayGqtgsGKT 441 (583)
+|+-|=+-+..-+++.+.+..|+.+. .|. |.. --|+-||+.|+|||
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKT 199 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKT 199 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHH
Confidence 33444444444556777777777653 554 443 45899999999997
No 390
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=33.83 E-value=22 Score=39.93 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=27.0
Q ss_pred cccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 395 FGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 395 f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
-+|+.+++++.. ++.+...++......++-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 346666665422 233444455566677888999999997544
No 391
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.60 E-value=22 Score=38.50 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=19.4
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
+...+-++....++-||+.|+|||....
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3333445555577779999999996654
No 392
>CHL00195 ycf46 Ycf46; Provisional
Probab=33.55 E-value=14 Score=40.86 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=14.7
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
-.|+-||++|+|||.+.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999665
No 393
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=33.50 E-value=14 Score=40.36 Aligned_cols=16 Identities=50% Similarity=0.787 Sum_probs=13.9
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.++-||++|+|||.+.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999776
No 394
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.45 E-value=26 Score=35.57 Aligned_cols=28 Identities=39% Similarity=0.576 Sum_probs=19.6
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
+++.++.. +--++-.|++|+|||-.+..
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHHh
Confidence 34444432 55679999999999977644
No 395
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=33.41 E-value=19 Score=35.52 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=23.4
Q ss_pred ccCCceEEEeehhhhhhHHHHhc-c-cceeEEEeeccCCCceEE
Q psy9448 23 IFYTTIVDVYKYVVNPLIDEVLS-G-YNCTVFAYGQTGTGKTFT 64 (583)
Q Consensus 23 ~~~~tq~~vy~~~~~plv~~~l~-G-~n~~i~ayGqtgSGKT~T 64 (583)
+.-.-|+++-.. .+.+++.+.. | .-..++-||+.|.|||..
T Consensus 24 ~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 24 DEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 333445555544 3566666653 2 234588999999999853
No 396
>KOG0742|consensus
Probab=33.37 E-value=19 Score=38.48 Aligned_cols=13 Identities=54% Similarity=0.999 Sum_probs=11.9
Q ss_pred eEEEeeccCCCce
Q psy9448 50 TVFAYGQTGTGKT 62 (583)
Q Consensus 50 ~i~ayGqtgSGKT 62 (583)
-|+-||+.|+|||
T Consensus 386 NilfyGPPGTGKT 398 (630)
T KOG0742|consen 386 NILFYGPPGTGKT 398 (630)
T ss_pred heeeeCCCCCCch
Confidence 4899999999997
No 397
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.20 E-value=13 Score=39.90 Aligned_cols=18 Identities=44% Similarity=0.554 Sum_probs=15.8
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999999983
No 398
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=33.14 E-value=25 Score=40.12 Aligned_cols=27 Identities=44% Similarity=0.712 Sum_probs=20.4
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..++..+++|.++.+ .++||||||.+.
T Consensus 31 ~~ai~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 31 QEIIDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHHHcCCCEEE--EcCCCchHHHHH
Confidence 456777889988754 579999999653
No 399
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=33.04 E-value=30 Score=38.62 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=18.7
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 3566778876 567779999999653
No 400
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=32.96 E-value=13 Score=37.73 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.7
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
.+|...|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 456666999999999884
No 401
>KOG1803|consensus
Probab=32.92 E-value=17 Score=40.64 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=14.0
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 429 TVFAYGQTGTGKTFTME 445 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm~ 445 (583)
-..--|+.|+|||||+-
T Consensus 203 l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLV 219 (649)
T ss_pred ceEeeCCCCCCceeeHH
Confidence 34567999999999984
No 402
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=32.91 E-value=13 Score=40.19 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.0
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 48 NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm 65 (583)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 456789999999998765
No 403
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=32.89 E-value=20 Score=36.83 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=16.1
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999665
No 404
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=32.84 E-value=24 Score=33.89 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=14.5
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 427 NCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm 444 (583)
...+.-||++|||||.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNIC 29 (209)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999998543
No 405
>KOG0953|consensus
Probab=32.80 E-value=19 Score=39.94 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=27.2
Q ss_pred eEEEeeccCCCceEEeecccCCCCCCCcccCCCCccchhhhhHHHHHHhhc
Q psy9448 50 TVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL 100 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~ 100 (583)
-||..|+|.|||||--.---.... ..--.|=+-....++|++....
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~ak-----sGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAK-----SGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhc-----cceecchHHHHHHHHHHHhhhc
Confidence 489999999999997543211110 0011244555566777766653
No 406
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=32.71 E-value=27 Score=34.12 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=21.4
Q ss_pred hhhHHHHhcc---cceeEEEeeccCCCceEEe
Q psy9448 416 NPLIDEVLSG---YNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 416 ~~~v~~~l~G---~n~~i~ayGqtgsGKT~Tm 444 (583)
-+-++.++.| ....+.-+|++|||||.-+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556777774 3466788999999999554
No 407
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.70 E-value=24 Score=38.88 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=19.6
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
..+..+++|.|..+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45677889988654 559999999654
No 408
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.62 E-value=14 Score=39.49 Aligned_cols=18 Identities=44% Similarity=0.510 Sum_probs=15.4
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
-.|+-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999999984
No 409
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=32.60 E-value=13 Score=39.19 Aligned_cols=13 Identities=38% Similarity=0.626 Sum_probs=11.8
Q ss_pred EeeccCCCceEEe
Q psy9448 53 AYGQTGTGKTFTM 65 (583)
Q Consensus 53 ayGqtgSGKT~Tm 65 (583)
-.|++|||||++|
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 5799999999988
No 410
>PLN03025 replication factor C subunit; Provisional
Probab=32.53 E-value=23 Score=36.83 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=16.1
Q ss_pred ccceeEEEeeccCCCceEEeec
Q psy9448 425 GYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 425 G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
|.-..++-||+.|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 3334567799999999977653
No 411
>PRK05580 primosome assembly protein PriA; Validated
Probab=32.42 E-value=25 Score=40.76 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=19.7
Q ss_pred hHHHHhcc-cceeEEEeeccCCCceEEee
Q psy9448 39 LIDEVLSG-YNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 39 lv~~~l~G-~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.++.+++| ....++.+|+||||||....
T Consensus 152 ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 152 AVEAIRAAAGFSPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred HHHHHHhccCCCcEEEECCCCChHHHHHH
Confidence 44555554 33458899999999997664
No 412
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=32.37 E-value=17 Score=44.48 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=21.0
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEeec
Q psy9448 415 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 415 ~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
+..+.+.+.+|.... +...+||||||+||.+
T Consensus 422 I~ai~~a~~~g~r~~-Ll~maTGSGKT~tai~ 452 (1123)
T PRK11448 422 IQAVEKAIVEGQREI-LLAMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHhccCCe-EEEeCCCCCHHHHHHH
Confidence 344555555666544 4449999999999864
No 413
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=32.37 E-value=26 Score=38.03 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=19.8
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEE
Q psy9448 417 PLIDEVLSGYNCTVFAYGQTGTGKTFT 443 (583)
Q Consensus 417 ~~v~~~l~G~n~~i~ayGqtgsGKT~T 443 (583)
..+..+++|.+ +++.++||||||.+
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHH
Confidence 34556677876 88899999999975
No 414
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=32.34 E-value=18 Score=33.90 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=13.4
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999865
No 415
>PRK14532 adenylate kinase; Provisional
Probab=32.26 E-value=18 Score=34.16 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=12.8
Q ss_pred eEEEeeccCCCceEE
Q psy9448 50 TVFAYGQTGTGKTFT 64 (583)
Q Consensus 50 ~i~ayGqtgSGKT~T 64 (583)
.|+..|+.|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999865
No 416
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=32.14 E-value=29 Score=34.82 Aligned_cols=24 Identities=46% Similarity=0.771 Sum_probs=18.4
Q ss_pred HHHHhcc---cceeEEEeeccCCCceE
Q psy9448 40 IDEVLSG---YNCTVFAYGQTGTGKTF 63 (583)
Q Consensus 40 v~~~l~G---~n~~i~ayGqtgSGKT~ 63 (583)
++.++.| ....++.+|.+|||||.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~ 38 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTI 38 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHH
Confidence 5666664 45778999999999973
No 417
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.99 E-value=15 Score=39.84 Aligned_cols=19 Identities=37% Similarity=0.363 Sum_probs=16.3
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
+..|...|++|+|||.|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568889999999999993
No 418
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=31.98 E-value=22 Score=36.78 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=12.7
Q ss_pred eEEEeeccCCCceEE
Q psy9448 50 TVFAYGQTGTGKTFT 64 (583)
Q Consensus 50 ~i~ayGqtgSGKT~T 64 (583)
.|+-.|+||||||-.
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 578899999999853
No 419
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=31.95 E-value=21 Score=39.47 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=29.7
Q ss_pred cccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCce
Q psy9448 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKT 441 (583)
Q Consensus 393 k~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT 441 (583)
..|+||.+.+.+..-.++ ..++ .-..+.+++|+-+|.||+||-
T Consensus 240 a~y~f~~Iig~S~~m~~~-----~~~a-kr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 240 AKYTFDDIIGESPAMLRV-----LELA-KRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred cccchhhhccCCHHHHHH-----HHHH-HhhcCCCCcEEEecCCCccHH
Confidence 468899998875432111 1111 235689999999999999993
No 420
>KOG0340|consensus
Probab=31.95 E-value=35 Score=35.80 Aligned_cols=30 Identities=30% Similarity=0.564 Sum_probs=23.2
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEeecc
Q psy9448 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 416 ~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
..+|..+|+|.+| +-...||||||...-.+
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 3467778999986 55678999999877664
No 421
>KOG0335|consensus
Probab=31.84 E-value=15 Score=40.18 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=18.6
Q ss_pred HhcccceeEEEeeccCCCceEEeecc
Q psy9448 422 VLSGYNCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 422 ~l~G~n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
+.+|.. ++|.+|||||||+.-.++
T Consensus 108 i~~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred eecCCc--eEEEccCCCcchHHHHHH
Confidence 345555 489999999999987765
No 422
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.81 E-value=14 Score=38.50 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=15.8
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
..+|+-.|.||||||+.|.
T Consensus 143 ~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 143 RKSIIICGGTASGKTTLLN 161 (312)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3456788999999999984
No 423
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=31.81 E-value=17 Score=38.38 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=20.6
Q ss_pred hhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 37 NPLIDEVLSGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 37 ~plv~~~l~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.-|+..+.+-.-+.|+.+|.+|||||+.+-
T Consensus 27 ~al~~~~~~p~~~~vli~G~~GtGKs~~ar 56 (350)
T CHL00081 27 LALILNVIDPKIGGVMIMGDRGTGKSTTIR 56 (350)
T ss_pred HHHHHhccCCCCCeEEEEcCCCCCHHHHHH
Confidence 334444444333568899999999998873
No 424
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=31.68 E-value=28 Score=39.45 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=19.5
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 39 LIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 39 lv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|..+++|.| |++..+||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 4566788988 566789999999664
No 425
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=31.61 E-value=15 Score=37.03 Aligned_cols=12 Identities=50% Similarity=0.852 Sum_probs=10.8
Q ss_pred eeccCCCceEEe
Q psy9448 433 YGQTGTGKTFTM 444 (583)
Q Consensus 433 yGqtgsGKT~Tm 444 (583)
.|++|||||.||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 499999999887
No 426
>PRK04040 adenylate kinase; Provisional
Probab=31.54 E-value=19 Score=34.36 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.7
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|+.+|.+|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999766
No 427
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=31.50 E-value=19 Score=34.28 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=12.3
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|.-.|++|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999765
No 428
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=31.38 E-value=28 Score=33.98 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=21.1
Q ss_pred hhHHHHhc-cc--ceeEEEeeccCCCceEEe
Q psy9448 38 PLIDEVLS-GY--NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 38 plv~~~l~-G~--n~~i~ayGqtgSGKT~Tm 65 (583)
+-+|.++. |+ ...++.+|++|+|||+..
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 45677774 54 567888999999998765
No 429
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=31.24 E-value=21 Score=31.94 Aligned_cols=26 Identities=8% Similarity=0.393 Sum_probs=18.6
Q ss_pred ccceEEeccceeeecchhHHHHHHHh
Q psy9448 141 KGSVIIQGLEEKAVHNKDEVYKILEK 166 (583)
Q Consensus 141 ~~~~~v~~l~~~~v~s~~e~~~ll~~ 166 (583)
.|.++++++....-.....+.++|..
T Consensus 70 ~gtL~l~~i~~L~~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 70 GGTLYLKNIDRLSPEAQRRLLDLLKR 95 (138)
T ss_dssp TSEEEEECGCCS-HHHHHHHHHHHHH
T ss_pred CCEEEECChHHCCHHHHHHHHHHHHh
Confidence 56688888888777777777777765
No 430
>KOG0727|consensus
Probab=31.22 E-value=21 Score=35.67 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=28.4
Q ss_pred eeEEEeeccCCCceEEeecccCCCCCCCc-------ccCCCCccchhhhhHHHHHHhhcc
Q psy9448 49 CTVFAYGQTGTGKTFTMEGEKSNDPSISW-------QDDPLSGIVPRAMNHLFDELRLLG 101 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~G~~~~~~~~~~-------~~~~~~Giipr~~~~lf~~~~~~~ 101 (583)
-.|+.||+.|+|||-..-.-.... ..++ .-...-|==||.+.++|...+++.
T Consensus 190 rgvllygppg~gktml~kava~~t-~a~firvvgsefvqkylgegprmvrdvfrlakena 248 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLAKAVANHT-TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA 248 (408)
T ss_pred cceEEeCCCCCcHHHHHHHHhhcc-chheeeeccHHHHHHHhccCcHHHHHHHHHHhccC
Confidence 358999999999984321110000 0000 001123556888888887766543
No 431
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=31.18 E-value=18 Score=40.21 Aligned_cols=16 Identities=44% Similarity=0.760 Sum_probs=13.7
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999998754
No 432
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=31.11 E-value=15 Score=38.28 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.6
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
...|...|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3467778999999999984
No 433
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=31.11 E-value=21 Score=38.29 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=14.7
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 427 NCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm 444 (583)
..-|.-.||||.|||.|+
T Consensus 203 ~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 203 KRVIALVGPTGVGKTTTL 220 (407)
T ss_pred CcEEEEECCCCCcHHHHH
Confidence 445566799999999997
No 434
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=30.98 E-value=24 Score=40.82 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=20.2
Q ss_pred hhhhHHHHhc-----ccceeEEEeeccCCCceEEeec
Q psy9448 415 VNPLIDEVLS-----GYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 415 ~~~~v~~~l~-----G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
+..+++.+.. |.+..+ ..-.||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gl-i~~~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGL-IWHTQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeE-EEEecCCCccHHHHH
Confidence 4556666555 334444 344999999999954
No 435
>PRK06762 hypothetical protein; Provisional
Probab=30.91 E-value=20 Score=32.94 Aligned_cols=15 Identities=33% Similarity=0.592 Sum_probs=12.0
Q ss_pred eEEEeeccCCCceEE
Q psy9448 50 TVFAYGQTGTGKTFT 64 (583)
Q Consensus 50 ~i~ayGqtgSGKT~T 64 (583)
.|...|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999763
No 436
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=30.90 E-value=28 Score=37.70 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=19.0
Q ss_pred hHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.+..+++|.+ +++-++||||||.+.
T Consensus 38 aip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCc--EEEECCCCchHHHHH
Confidence 4556788877 567779999999653
No 437
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=30.89 E-value=16 Score=42.44 Aligned_cols=19 Identities=37% Similarity=0.380 Sum_probs=16.3
Q ss_pred eeEEEeeccCCCceEEeec
Q psy9448 49 CTVFAYGQTGTGKTFTMEG 67 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~G 67 (583)
..|.-.|++|+|||+|+--
T Consensus 186 ~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5788899999999999843
No 438
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=30.89 E-value=29 Score=38.01 Aligned_cols=25 Identities=48% Similarity=0.589 Sum_probs=19.8
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEE
Q psy9448 417 PLIDEVLSGYNCTVFAYGQTGTGKTFT 443 (583)
Q Consensus 417 ~~v~~~l~G~n~~i~ayGqtgsGKT~T 443 (583)
..+..+++|.+ +++-.+||||||.+
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla 54 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAG 54 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 34566778877 78889999999976
No 439
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=30.88 E-value=27 Score=39.15 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=21.8
Q ss_pred hhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~G~n~~i~ayGqtgSGKT~Tm 65 (583)
++.+...+.......|+-||++|+|||+.-
T Consensus 74 i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 74 IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 344554555666677889999999998654
No 440
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=30.88 E-value=19 Score=35.44 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=16.8
Q ss_pred ceeEEEeeccCCCceEEeecc
Q psy9448 427 NCTVFAYGQTGTGKTFTMEGE 447 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm~G~ 447 (583)
...++-||..|+|||+....-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456899999999999876443
No 441
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=30.84 E-value=36 Score=34.24 Aligned_cols=30 Identities=30% Similarity=0.258 Sum_probs=23.2
Q ss_pred hhhhHHHHhc--ccceeEEEeeccCCCceEEe
Q psy9448 36 VNPLIDEVLS--GYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 36 ~~plv~~~l~--G~n~~i~ayGqtgSGKT~Tm 65 (583)
+..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 56778899999999999665
No 442
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=30.84 E-value=26 Score=34.17 Aligned_cols=26 Identities=42% Similarity=0.678 Sum_probs=19.7
Q ss_pred hhHHHHhc-c--cceeEEEeeccCCCceE
Q psy9448 38 PLIDEVLS-G--YNCTVFAYGQTGTGKTF 63 (583)
Q Consensus 38 plv~~~l~-G--~n~~i~ayGqtgSGKT~ 63 (583)
|-+|.++. | .+..++..|++|||||.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~ 34 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTT 34 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHH
Confidence 45677774 3 35789999999999964
No 443
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=30.83 E-value=23 Score=31.53 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.4
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998754
No 444
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=30.67 E-value=28 Score=40.25 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.3
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.+.|.||+.-|.+|||||.|.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 589999999999999999875
No 445
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=30.64 E-value=15 Score=38.58 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=13.1
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
+.-.|++|||||.+|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999988
No 446
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=30.57 E-value=40 Score=35.28 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.4
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 427 NCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 427 n~~i~ayGqtgsGKT~Tm 444 (583)
+..|+-.|++|+|||...
T Consensus 64 ~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCcEEEEeCCCChHHHHH
Confidence 456899999999998543
No 447
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=30.46 E-value=33 Score=35.38 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=23.8
Q ss_pred hhhhhHHHHhccc---ceeEEEeeccCCCceEEee
Q psy9448 35 VVNPLIDEVLSGY---NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 35 ~~~plv~~~l~G~---n~~i~ayGqtgSGKT~Tm~ 66 (583)
+..+-++.++.|- ...+..||++|||||..+.
T Consensus 79 Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 79 TGSKELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3456678888753 5667899999999997653
No 448
>KOG0741|consensus
Probab=30.39 E-value=24 Score=38.97 Aligned_cols=14 Identities=50% Similarity=0.964 Sum_probs=12.5
Q ss_pred eEEEeeccCCCceE
Q psy9448 50 TVFAYGQTGTGKTF 63 (583)
Q Consensus 50 ~i~ayGqtgSGKT~ 63 (583)
-|+.|||.|+|||-
T Consensus 258 GiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 258 GILLYGPPGTGKTL 271 (744)
T ss_pred eEEEECCCCCChhH
Confidence 38999999999985
No 449
>KOG0729|consensus
Probab=30.37 E-value=24 Score=35.51 Aligned_cols=16 Identities=50% Similarity=0.781 Sum_probs=13.5
Q ss_pred eeEEEeeccCCCceEE
Q psy9448 428 CTVFAYGQTGTGKTFT 443 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~T 443 (583)
--|+.||+.|+|||..
T Consensus 212 kgvllygppgtgktl~ 227 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLC 227 (435)
T ss_pred CceEEeCCCCCchhHH
Confidence 4589999999999854
No 450
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=30.35 E-value=25 Score=40.75 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.8
Q ss_pred hcccceeEEEeeccCCCceEEe
Q psy9448 423 LSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 423 l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
-.+.|.||+.-|.+|||||.|.
T Consensus 88 ~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 88 NDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred hcCCCceEEEecCCCCcchHHH
Confidence 3689999999999999999876
No 451
>PRK01172 ski2-like helicase; Provisional
Probab=30.31 E-value=29 Score=40.11 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=18.7
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEE
Q psy9448 38 PLIDEVLSGYNCTVFAYGQTGTGKTFT 64 (583)
Q Consensus 38 plv~~~l~G~n~~i~ayGqtgSGKT~T 64 (583)
..++.+.+|.| ++..++||||||..
T Consensus 29 ~ai~~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 29 MAIEQLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHHhcCCc--EEEECCCCchHHHH
Confidence 34556677876 56778999999975
No 452
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=30.27 E-value=18 Score=35.16 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.7
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999653
No 453
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=30.25 E-value=26 Score=40.36 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.4
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.+.|-||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999876
No 454
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=30.08 E-value=32 Score=34.59 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=16.1
Q ss_pred hHHHHhcccceeEEEeeccCCCceEE
Q psy9448 418 LIDEVLSGYNCTVFAYGQTGTGKTFT 443 (583)
Q Consensus 418 ~v~~~l~G~n~~i~ayGqtgsGKT~T 443 (583)
++..+..|.+ |+-+|++|+|||..
T Consensus 14 ~l~~l~~g~~--vLL~G~~GtGKT~l 37 (262)
T TIGR02640 14 ALRYLKSGYP--VHLRGPAGTGKTTL 37 (262)
T ss_pred HHHHHhcCCe--EEEEcCCCCCHHHH
Confidence 3444444554 56689999999854
No 455
>PF05729 NACHT: NACHT domain
Probab=30.06 E-value=17 Score=32.96 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=13.1
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 429 TVFAYGQTGTGKTFTM 444 (583)
Q Consensus 429 ~i~ayGqtgsGKT~Tm 444 (583)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999555
No 456
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=30.03 E-value=20 Score=32.90 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.1
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999998654
No 457
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=30.01 E-value=26 Score=32.70 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=13.7
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
..|...|++|||||..+
T Consensus 2 ~ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLV 18 (180)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35778899999998754
No 458
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=29.94 E-value=22 Score=36.94 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=19.4
Q ss_pred hcccceeEEEeeccCCCceEEeec
Q psy9448 423 LSGYNCTVFAYGQTGTGKTFTMEG 446 (583)
Q Consensus 423 l~G~n~~i~ayGqtgsGKT~Tm~G 446 (583)
-...+.-++-||+.|||||.+|.-
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHH
Confidence 345667789999999999988854
No 459
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=29.93 E-value=33 Score=33.46 Aligned_cols=25 Identities=44% Similarity=0.753 Sum_probs=18.9
Q ss_pred hhHHHHh-ccc--ceeEEEeeccCCCce
Q psy9448 417 PLIDEVL-SGY--NCTVFAYGQTGTGKT 441 (583)
Q Consensus 417 ~~v~~~l-~G~--n~~i~ayGqtgsGKT 441 (583)
|-++.++ .|+ +..++..|++|||||
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT 33 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKT 33 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcH
Confidence 4456666 444 478899999999998
No 460
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=29.77 E-value=17 Score=38.64 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=21.3
Q ss_pred ehhhhhhHHHHhc----ccceeEEEeeccCCCceEEe
Q psy9448 33 KYVVNPLIDEVLS----GYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 33 ~~~~~plv~~~l~----G~n~~i~ayGqtgSGKT~Tm 65 (583)
+.++..+.++++. -.---+.-||+.|+|||+..
T Consensus 129 dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 129 DKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred HHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 3444455566553 22345778999999998653
No 461
>PRK05580 primosome assembly protein PriA; Validated
Probab=29.74 E-value=20 Score=41.52 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=23.4
Q ss_pred cccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEee
Q psy9448 401 FSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 401 f~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm~ 445 (583)
+.....|.++++.+... . ....++.+|+||||||....
T Consensus 143 ~~Lt~~Q~~ai~~i~~~----~---~~~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAA----A---GFSPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CCCCHHHHHHHHHHHhc----c---CCCcEEEECCCCChHHHHHH
Confidence 34445666554444221 1 23458999999999997653
No 462
>PRK03839 putative kinase; Provisional
Probab=29.71 E-value=21 Score=33.51 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=11.9
Q ss_pred EEEeeccCCCceEE
Q psy9448 51 VFAYGQTGTGKTFT 64 (583)
Q Consensus 51 i~ayGqtgSGKT~T 64 (583)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999864
No 463
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=29.68 E-value=19 Score=39.24 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=16.3
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
...|+-+|.+|+|||+|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578889999999999984
No 464
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=29.67 E-value=21 Score=32.24 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.6
Q ss_pred EEEeeccCCCceEE
Q psy9448 430 VFAYGQTGTGKTFT 443 (583)
Q Consensus 430 i~ayGqtgsGKT~T 443 (583)
++-.|..|||||+.
T Consensus 2 i~l~G~~GsGKST~ 15 (150)
T cd02021 2 IVVMGVSGSGKSTV 15 (150)
T ss_pred EEEEcCCCCCHHHH
Confidence 56789999999854
No 465
>PHA02244 ATPase-like protein
Probab=29.64 E-value=26 Score=37.28 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=14.4
Q ss_pred hcccceeEEEeeccCCCceEEe
Q psy9448 423 LSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 423 l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
-.|.+ |+-+|++|+|||+-.
T Consensus 117 ~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 117 NANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred hcCCC--EEEECCCCCCHHHHH
Confidence 34554 566999999999544
No 466
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=29.62 E-value=30 Score=39.91 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=19.3
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 589999999999999999875
No 467
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=29.62 E-value=20 Score=32.65 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=11.9
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|+..|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 667899999997643
No 468
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=29.55 E-value=36 Score=37.28 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=15.8
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
.-++..|+||||||.++.
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 568999999999999884
No 469
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=29.53 E-value=22 Score=38.50 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.7
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
..|+-+|++|+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 56899999999998755
No 470
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=29.51 E-value=27 Score=40.30 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.3
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.|.|.||+.-|.+|||||.+.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 589999999999999999875
No 471
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=29.48 E-value=26 Score=27.33 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=11.3
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|.-.|..|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999997554
No 472
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=29.47 E-value=16 Score=43.67 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=17.5
Q ss_pred cceeEEEeeccCCCceEEee
Q psy9448 47 YNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 47 ~n~~i~ayGqtgSGKT~Tm~ 66 (583)
-|+-.+..|+||||||++|-
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 47888999999999999883
No 473
>PRK14974 cell division protein FtsY; Provisional
Probab=29.45 E-value=19 Score=37.79 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.5
Q ss_pred ceeEEEeeccCCCceEEee
Q psy9448 48 NCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm~ 66 (583)
...|+-.|++|+|||.|+-
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4678899999999999883
No 474
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=29.35 E-value=30 Score=36.93 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=13.9
Q ss_pred EEEeeccCCCceEEee
Q psy9448 430 VFAYGQTGTGKTFTME 445 (583)
Q Consensus 430 i~ayGqtgsGKT~Tm~ 445 (583)
++..|.||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999998875
No 475
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=29.30 E-value=17 Score=42.98 Aligned_cols=18 Identities=39% Similarity=0.709 Sum_probs=15.7
Q ss_pred ceeEEEeeccCCCceEEe
Q psy9448 48 NCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 48 n~~i~ayGqtgSGKT~Tm 65 (583)
|.-++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 456788899999999998
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=29.24 E-value=16 Score=34.85 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=12.4
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999877
No 477
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=29.14 E-value=31 Score=39.96 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=16.8
Q ss_pred cccceeEEEeeccCCCceEEee
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.+...-++..|+||||||....
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred ccCCceEEEECCCCCcHHHHHH
Confidence 3444568999999999997653
No 478
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=29.09 E-value=30 Score=39.58 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=29.0
Q ss_pred ccccccccccccccceeehhhhhhhHHHHhcccceeEEEeeccCCCceEEe
Q psy9448 394 TFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 394 ~f~fD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.-+||.+++.+. . +..++..+..++...++-||++|+|||+..
T Consensus 150 p~~~~~iiGqs~----~----~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 150 PRAFSEIVGQER----A----IKALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred cCcHHhceeCcH----H----HHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 456677775432 2 223445555677778999999999999654
No 479
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=29.05 E-value=25 Score=31.55 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=11.4
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
|.-.|++|||||..+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999998533
No 480
>KOG0652|consensus
Probab=29.03 E-value=24 Score=35.41 Aligned_cols=13 Identities=62% Similarity=1.007 Sum_probs=11.9
Q ss_pred eEEEeeccCCCce
Q psy9448 429 TVFAYGQTGTGKT 441 (583)
Q Consensus 429 ~i~ayGqtgsGKT 441 (583)
-++.||+.|+|||
T Consensus 207 GvLmYGPPGTGKT 219 (424)
T KOG0652|consen 207 GVLMYGPPGTGKT 219 (424)
T ss_pred ceEeeCCCCCcHH
Confidence 4799999999997
No 481
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=28.94 E-value=29 Score=40.69 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.3
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 45 SGYNCTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 45 ~G~n~~i~ayGqtgSGKT~Tm 65 (583)
.|.|.||+.-|.+|||||.|.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 599999999999999999775
No 482
>PHA02653 RNA helicase NPH-II; Provisional
Probab=28.93 E-value=34 Score=39.52 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=18.4
Q ss_pred hhHHHHhcccceeEEEeeccCCCceEE
Q psy9448 417 PLIDEVLSGYNCTVFAYGQTGTGKTFT 443 (583)
Q Consensus 417 ~~v~~~l~G~n~~i~ayGqtgsGKT~T 443 (583)
.++..+++|.+ ++..|+||||||..
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhH
Confidence 34555566654 68999999999954
No 483
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.91 E-value=20 Score=40.92 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.9
Q ss_pred eEEEeeccCCCceEEee
Q psy9448 50 TVFAYGQTGTGKTFTME 66 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm~ 66 (583)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38889999999999874
No 484
>PRK14530 adenylate kinase; Provisional
Probab=28.91 E-value=22 Score=34.55 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=12.9
Q ss_pred eEEEeeccCCCceEEe
Q psy9448 50 TVFAYGQTGTGKTFTM 65 (583)
Q Consensus 50 ~i~ayGqtgSGKT~Tm 65 (583)
.|+..|++|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999998643
No 485
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=28.76 E-value=17 Score=39.00 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=12.4
Q ss_pred eeEEEeeccCCCceEEe
Q psy9448 49 CTVFAYGQTGTGKTFTM 65 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm 65 (583)
.-++..|.||||||.+|
T Consensus 16 ~~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAI 32 (386)
T ss_dssp G-EEEEE-TTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34678899999999755
No 486
>KOG0735|consensus
Probab=28.74 E-value=22 Score=40.63 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=16.7
Q ss_pred cceeEEEeeccCCCceEEee
Q psy9448 47 YNCTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 47 ~n~~i~ayGqtgSGKT~Tm~ 66 (583)
.-..|+-||+.|+||||...
T Consensus 700 ~~~giLLyGppGcGKT~la~ 719 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLAS 719 (952)
T ss_pred cccceEEECCCCCcHHHHHH
Confidence 34669999999999999763
No 487
>KOG0745|consensus
Probab=28.67 E-value=24 Score=38.06 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=13.1
Q ss_pred eeEEEeeccCCCceEE
Q psy9448 49 CTVFAYGQTGTGKTFT 64 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~T 64 (583)
+-|+..|+||||||+.
T Consensus 227 SNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL 242 (564)
T ss_pred ccEEEECCCCCchhHH
Confidence 4578889999999853
No 488
>KOG0926|consensus
Probab=28.66 E-value=29 Score=40.15 Aligned_cols=19 Identities=42% Similarity=0.557 Sum_probs=15.6
Q ss_pred cceeEEEeeccCCCceEEe
Q psy9448 426 YNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 426 ~n~~i~ayGqtgsGKT~Tm 444 (583)
-|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 3566788999999999766
No 489
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.61 E-value=18 Score=39.16 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=15.1
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 49 CTVFAYGQTGTGKTFTME 66 (583)
Q Consensus 49 ~~i~ayGqtgSGKT~Tm~ 66 (583)
..++..|++|+|||+|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457788999999999883
No 490
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=28.56 E-value=28 Score=40.31 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.3
Q ss_pred cccceeEEEeeccCCCceEEe
Q psy9448 424 SGYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 424 ~G~n~~i~ayGqtgsGKT~Tm 444 (583)
.|.|.||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 588999999999999999875
No 491
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=28.29 E-value=13 Score=36.50 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.1
Q ss_pred EeeccCCCceEEe
Q psy9448 53 AYGQTGTGKTFTM 65 (583)
Q Consensus 53 ayGqtgSGKT~Tm 65 (583)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999887
No 492
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=28.28 E-value=23 Score=34.27 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.9
Q ss_pred EEEeeccCCCceEE
Q psy9448 51 VFAYGQTGTGKTFT 64 (583)
Q Consensus 51 i~ayGqtgSGKT~T 64 (583)
|+.+|++|||||+.
T Consensus 2 I~i~G~pGsGKsT~ 15 (210)
T TIGR01351 2 LVLLGPPGSGKGTQ 15 (210)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999764
No 493
>PRK00131 aroK shikimate kinase; Reviewed
Probab=28.27 E-value=24 Score=32.38 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.6
Q ss_pred eeEEEeeccCCCceEE
Q psy9448 428 CTVFAYGQTGTGKTFT 443 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~T 443 (583)
-.|+-+|..|||||+.
T Consensus 5 ~~i~l~G~~GsGKstl 20 (175)
T PRK00131 5 PNIVLIGFMGAGKSTI 20 (175)
T ss_pred CeEEEEcCCCCCHHHH
Confidence 3688999999999954
No 494
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=28.26 E-value=23 Score=35.14 Aligned_cols=31 Identities=39% Similarity=0.489 Sum_probs=0.0
Q ss_pred hhhhhHHHHhc------ccceeEEEeeccCCCceEEe
Q psy9448 414 VVNPLIDEVLS------GYNCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 414 ~~~~~v~~~l~------G~n~~i~ayGqtgsGKT~Tm 444 (583)
+..|+.+.++. -.+-+-..+|++|+|||.|+
T Consensus 13 v~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKteti 49 (231)
T PF12774_consen 13 VITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETI 49 (231)
T ss_dssp ---HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHH
T ss_pred eechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHH
No 495
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=28.23 E-value=22 Score=37.13 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=14.7
Q ss_pred eeEEEeeccCCCceEEee
Q psy9448 428 CTVFAYGQTGTGKTFTME 445 (583)
Q Consensus 428 ~~i~ayGqtgsGKT~Tm~ 445 (583)
..++-||+.|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 467889999999997653
No 496
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=28.22 E-value=23 Score=33.51 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=11.5
Q ss_pred EEEeeccCCCceEE
Q psy9448 51 VFAYGQTGTGKTFT 64 (583)
Q Consensus 51 i~ayGqtgSGKT~T 64 (583)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999753
No 497
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=28.19 E-value=23 Score=33.14 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=12.1
Q ss_pred EEEeeccCCCceEE
Q psy9448 430 VFAYGQTGTGKTFT 443 (583)
Q Consensus 430 i~ayGqtgsGKT~T 443 (583)
|+.+|..|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999854
No 498
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=28.15 E-value=29 Score=34.03 Aligned_cols=15 Identities=47% Similarity=0.556 Sum_probs=11.4
Q ss_pred EEEeeccCCCceEEe
Q psy9448 51 VFAYGQTGTGKTFTM 65 (583)
Q Consensus 51 i~ayGqtgSGKT~Tm 65 (583)
++-+|+||||||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 567899999998754
No 499
>PRK04195 replication factor C large subunit; Provisional
Probab=28.14 E-value=25 Score=38.84 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=20.3
Q ss_pred hhhHHHHhccc-ceeEEEeeccCCCceEEe
Q psy9448 416 NPLIDEVLSGY-NCTVFAYGQTGTGKTFTM 444 (583)
Q Consensus 416 ~~~v~~~l~G~-n~~i~ayGqtgsGKT~Tm 444 (583)
..++.....|. .-.++-||+.|+|||+..
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 34444444554 457889999999999665
No 500
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=28.07 E-value=26 Score=32.71 Aligned_cols=14 Identities=43% Similarity=0.515 Sum_probs=11.9
Q ss_pred EEEeeccCCCceEE
Q psy9448 430 VFAYGQTGTGKTFT 443 (583)
Q Consensus 430 i~ayGqtgsGKT~T 443 (583)
++.+|.+|+|||..
T Consensus 2 ~li~G~~G~GKT~l 15 (187)
T cd01124 2 TLLSGGPGTGKTTF 15 (187)
T ss_pred EEEEcCCCCCHHHH
Confidence 67899999999953
Done!