RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9448
(583 letters)
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 541 bits (1396), Expect = 0.0
Identities = 201/290 (69%), Positives = 249/290 (85%), Gaps = 2/290 (0%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
+VY VV+P++DEVL GYNCT+FAYGQTGTGKT+TMEG+++++ +W+ P +GI+PRA
Sbjct: 64 EVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRA 123
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK-LRLFEDSARKGSVIIQG 148
+ LF++L E++V+VS+LE+YNEEL DLLS D+ K LR+F+D+ KG V+IQG
Sbjct: 124 LYQLFEKLESQN-TEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQG 182
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
LEE V+N +E K+LEKGS KR+TAATLMN SSRSH+IF+ITIHIK+ ++ GEEL++
Sbjct: 183 LEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKI 242
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTR 268
GKLNLVDLAGSENIGRSGA++KRAREAGNINQSLLTLGR I ALVEK+PHIPYRESKLTR
Sbjct: 243 GKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTR 302
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318
LLQDSLGGRTKTSIIAT+SPA +N+EETLSTL+YAHRAKNI N+PE+NQK
Sbjct: 303 LLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352
Score = 210 bits (537), Expect = 6e-63
Identities = 80/156 (51%), Positives = 112/156 (71%), Gaps = 3/156 (1%)
Query: 359 PLNSVERAAKSCSIVDCS-SSREITIKERVNDKIS-KTFGFDRVFSQESKQVDVYKYVVN 416
P NS ER KS +V+ S SS+EI + DK S KT+ FD+VF E+ Q++VY VV+
Sbjct: 12 PRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVS 71
Query: 417 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL 476
P++DEVL GYNCT+FAYGQTGTGKT+TMEG+++++ +W+ P +GI+PRA+ LF++L
Sbjct: 72 PILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKL 131
Query: 477 RLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
E++V+VS+LE+YNEEL DLLS D+ K
Sbjct: 132 ESQN-TEYSVKVSYLELYNEELFDLLSSESDLNKPL 166
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 391 bits (1008), Expect = e-133
Identities = 146/285 (51%), Positives = 192/285 (67%), Gaps = 17/285 (5%)
Query: 29 VDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPR 88
VY+ PL++ VL GYN T+FAYGQTG+GKT+TMEG+ + GI+PR
Sbjct: 55 EFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGD---------PPEEEPGIIPR 105
Query: 89 AMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVII 146
A+ LF+ + + F+VRVS+LEIYNE++ DLLSP+ KLR+ ED K V +
Sbjct: 106 ALEDLFERIEERKERKWSFSVRVSYLEIYNEKIYDLLSPSSKKKKLRIREDP--KKGVYV 163
Query: 147 QGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELL 206
+GL E V + +EV ++LE G++ R A+T MN SSRSH IFTIT+ ++ D + +
Sbjct: 164 KGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEESSRSHAIFTITVEQRN--RDTDGSV 221
Query: 207 RTGKLNLVDLAGSENIGRSG-AQDKRAREAGNINQSLLTLGRCITALVEK-TPHIPYRES 264
+TGKLNLVDLAGSE ++G A +R +EA NIN+SL LG I AL E + HIPYR+S
Sbjct: 222 KTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSLSALGNVINALAENQSSHIPYRDS 281
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
KLTRLLQDSLGG +KT +IA +SP+ N EETLSTL +A RAKNI
Sbjct: 282 KLTRLLQDSLGGNSKTLMIANISPSDSNYEETLSTLRFASRAKNI 326
Score = 168 bits (428), Expect = 2e-47
Identities = 69/158 (43%), Positives = 92/158 (58%), Gaps = 13/158 (8%)
Query: 359 PLNSVERAAKSCSIVDCSS--SREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVN 416
PLN E++ S IV+ S + N KTF FDRVF E+ Q VY+
Sbjct: 4 PLNEREKSRGSSDIVNVDETDSEDKESVVITNKGREKTFTFDRVFDPEATQEFVYEETAK 63
Query: 417 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL 476
PL++ VL GYN T+FAYGQTG+GKT+TMEG+ + GI+PRA+ LF+ +
Sbjct: 64 PLVESVLEGYNVTIFAYGQTGSGKTYTMEGD---------PPEEEPGIIPRALEDLFERI 114
Query: 477 RLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+ F+VRVS+LEIYNE++ DLLSP+ KLR
Sbjct: 115 EERKERKWSFSVRVSYLEIYNEKIYDLLSPSSKKKKLR 152
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 389 bits (1002), Expect = e-132
Identities = 148/290 (51%), Positives = 197/290 (67%), Gaps = 19/290 (6%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DV++ PL+D VL GYN T+FAYGQTG+GKT+TM G + GI+PRA
Sbjct: 62 DVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDSP-----------GIIPRA 110
Query: 90 MNHLFDEL-RLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ LF+++ + +F+V+VS+LEIYNE++ DLL+P+ KL + ED KG V ++G
Sbjct: 111 LKDLFEKIDKREEGWQFSVKVSYLEIYNEKIRDLLNPSSK--KLEIREDE--KGGVYVKG 166
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L E +V + +EVY +LEKG++ R AAT MN SSRSH +FTIT+ K + +
Sbjct: 167 LTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKN-SSSGSGKA 225
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--KTPHIPYRESKL 266
KLNLVDLAGSE ++GA+ R +EAGNIN+SL LG I AL + K+ HIPYR+SKL
Sbjct: 226 SKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKL 285
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEIN 316
TRLLQDSLGG +KT +IA VSP+ N+EETLSTL +A RAK I N+P +N
Sbjct: 286 TRLLQDSLGGNSKTLMIANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
Score = 170 bits (432), Expect = 5e-48
Identities = 62/150 (41%), Positives = 93/150 (62%), Gaps = 14/150 (9%)
Query: 359 PLNSVERAAKSCSIVDC--SSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVN 416
PLN E++ KS S+V + +T++ N + K F FD+VF + Q DV++
Sbjct: 10 PLNKREKSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVFDATASQEDVFEETAA 69
Query: 417 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL 476
PL+D VL GYN T+FAYGQTG+GKT+TM G + GI+PRA+ LF+++
Sbjct: 70 PLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDSP-----------GIIPRALKDLFEKI 118
Query: 477 -RLLGDAEFTVRVSFLEIYNEELIDLLSPT 505
+ +F+V+VS+LEIYNE++ DLL+P+
Sbjct: 119 DKREEGWQFSVKVSYLEIYNEKIRDLLNPS 148
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 358 bits (920), Expect = e-120
Identities = 138/286 (48%), Positives = 184/286 (64%), Gaps = 18/286 (6%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
+T DVY+ PL++ VL GYN T+FAYGQTG+GKT+TM G + GI
Sbjct: 57 STQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDP-----------GI 105
Query: 86 VPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGS 143
+PRA+ LF+ + + F+V VS+LEIYNE++ DLLSP L L ED
Sbjct: 106 IPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGG-- 163
Query: 144 VIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGE 203
V ++GL E V + ++ +L+KG + R TA+T MN SSRSH IFTI + ++ + DG
Sbjct: 164 VYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGR 223
Query: 204 ELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--KTPHIPY 261
+++ KLNLVDLAGSE ++GA+ R +EA NIN+SL LG I+AL K HIPY
Sbjct: 224 -SIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPY 282
Query: 262 RESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
R+SKLTRLLQDSLGG +KT +IA +SP+ N +ETLSTL +A RAK
Sbjct: 283 RDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328
Score = 155 bits (393), Expect = 2e-42
Identities = 61/157 (38%), Positives = 84/157 (53%), Gaps = 16/157 (10%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVND--KISKTFGFDRVFSQESKQVDVYKYVVN 416
PLN E S + ++ +T+ + K+F FD VF S Q DVY+
Sbjct: 10 PLNGRESK-SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAK 68
Query: 417 PLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL 476
PL++ VL GYN T+FAYGQTG+GKT+TM G + GI+PRA+ LF+ +
Sbjct: 69 PLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDP-----------GIIPRALEDLFNLI 117
Query: 477 RLL--GDAEFTVRVSFLEIYNEELIDLLSPTDDITKL 511
+ F+V VS+LEIYNE++ DLLSP L
Sbjct: 118 DERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPL 154
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 332 bits (854), Expect = e-110
Identities = 147/282 (52%), Positives = 181/282 (64%), Gaps = 12/282 (4%)
Query: 29 VDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPR 88
DVY PL+D VL GYN T+FAYGQTGTGKTFTMEG + L GI+P
Sbjct: 63 EDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE--------PPELRGIIPN 114
Query: 89 AMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ H+F + + +F VRVS+LEIYNEE+ DLL D KL L E R V ++
Sbjct: 115 SFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGK-DQKKKLELKERPDR--GVYVKD 171
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L V N +E+ K++ G++ R AT MN SSRSH+IFTITI + DGE +R
Sbjct: 172 LSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRV 231
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-KTPHIPYRESKLT 267
GKLNLVDLAGSE ++GA R +EA IN SL LG I+ALV+ K+ HIPYR+SKLT
Sbjct: 232 GKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLT 291
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
RLLQDSLGG +KT + A + PA N +ETLSTL YA+RAKNI
Sbjct: 292 RLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333
Score = 147 bits (374), Expect = 8e-40
Identities = 67/155 (43%), Positives = 87/155 (56%), Gaps = 13/155 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKERVND--KISKTFGFDRVFSQESKQVDVYKYVV 415
PLN E++ + IV +R ++T+ D + K F FD V+ S Q DVY
Sbjct: 11 PLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETA 70
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
PL+D VL GYN T+FAYGQTGTGKTFTMEG + L GI+P + H+F
Sbjct: 71 RPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE--------PPELRGIIPNSFAHIFGH 122
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
+ + +F VRVS+LEIYNEE+ DLL D K
Sbjct: 123 IAKAENVQFLVRVSYLEIYNEEVRDLLGK--DQKK 155
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 327 bits (840), Expect = e-108
Identities = 142/292 (48%), Positives = 191/292 (65%), Gaps = 19/292 (6%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
+VY V PL+D + GYN TV AYGQTG+GKT+TM + +D+ GI+PRA
Sbjct: 56 EVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTA-----FTASEDEEEVGIIPRA 110
Query: 90 MNHLFDELRLLGDA-EFTVRVSFLEIYNEELIDLLSP-TDDITKLRLFEDSARKGSVIIQ 147
+ H+F ++ D +F ++VSFLE+YNEE+ DLLSP T + + +++ EDS KG++II
Sbjct: 111 IQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDS--KGNIIIV 168
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIH-------IKDNSL 200
GL E V++ EV LE+GS R TA+T MN+ SSRSH IFTIT+ I S
Sbjct: 169 GLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSG 228
Query: 201 DGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP--- 257
D + T K + VDLAGSE + ++GA R +E +IN LL LG I+AL +++
Sbjct: 229 DDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGS 288
Query: 258 HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
H+PYR+SKLTRLLQDSLGG + T +IA VSPA N EETL+TL YA+RA+NI
Sbjct: 289 HVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNI 340
Score = 140 bits (356), Expect = 3e-37
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 6/114 (5%)
Query: 392 SKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSND 451
K+F FD VF + Q +VY V PL+D + GYN TV AYGQTG+GKT+TM
Sbjct: 39 DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTA---- 94
Query: 452 PSISWQDDPLSGIVPRAMNHLFDELRLLGDA-EFTVRVSFLEIYNEELIDLLSP 504
+ +D+ GI+PRA+ H+F ++ D +F ++VSFLE+YNEE+ DLLSP
Sbjct: 95 -FTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSP 147
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 310 bits (797), Expect = e-101
Identities = 126/279 (45%), Positives = 166/279 (59%), Gaps = 19/279 (6%)
Query: 36 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 95
V+PL+ L GYN +FAYGQTG+GKT+TMEG N GI+PRA+ LF+
Sbjct: 66 VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENP-----------GIIPRALEQLFN 114
Query: 96 ELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDI-TKLRLFEDSARKGSVIIQGLEEK 152
L + +T+ S LEIYNE + DLL+ KL + DS KG + L E
Sbjct: 115 TAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDS--KGETYVTNLTEV 172
Query: 153 AVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLN 212
V + +EV ++L GS+ R A+T MN HSSRSH +F + I N GE+ GKLN
Sbjct: 173 PVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGT-NLQTGEQ--TRGKLN 229
Query: 213 LVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRLLQD 272
LVDLAGSE + +SGA R +EA IN+SL LG I+AL K H+PYR SKLT LLQD
Sbjct: 230 LVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQD 289
Query: 273 SLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITN 311
SLGG +KT + +SP + N+ ETL +L +A R +++
Sbjct: 290 SLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328
Score = 142 bits (361), Expect = 5e-38
Identities = 62/172 (36%), Positives = 86/172 (50%), Gaps = 20/172 (11%)
Query: 359 PLNSVERAAKSCSI-VDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNP 417
PL E S I I + + K K+F FDRVF ++ Q DV++ V +P
Sbjct: 12 PLLPSESTEYSSVISFPDEDGGTIELSKGTGKK--KSFSFDRVFDPDASQEDVFEEV-SP 68
Query: 418 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELR 477
L+ L GYN +FAYGQTG+GKT+TMEG N GI+PRA+ LF+
Sbjct: 69 LVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENP-----------GIIPRALEQLFNTAE 117
Query: 478 LLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITK---LRHTSEYTEEIEKL 524
L + +T+ S LEIYNE + DLL+ K ++H S+ + L
Sbjct: 118 ELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNL 169
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 299 bits (769), Expect = 1e-97
Identities = 126/284 (44%), Positives = 181/284 (63%), Gaps = 22/284 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
+VY+ + P++ L GYN T+FAYGQT +GKTFTM G+ + +P GI+P A
Sbjct: 56 EVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGD---------EQEP--GIIPLA 104
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
+ +F ++ D EF +RVS+LEIYNE++ DLLSP+ +LR+ ED V++ GL
Sbjct: 105 VRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP--QELRIREDP--NKGVVVAGL 160
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHI--KDNSLDGEELLR 207
E+ V + + + +++ +G + R T N SSRSHTIF +TI + +S G +
Sbjct: 161 TEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVS 220
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP--HIPYRESK 265
T LNL+DLAGSE ++GA ++R +E IN+SLLTLG I+ L E HIPYR+SK
Sbjct: 221 T--LNLIDLAGSERASQTGAGERR-KEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSK 277
Query: 266 LTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
LTR+LQ SL G +T+II T+SPA ++EETL+TL +A RAK +
Sbjct: 278 LTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321
Score = 133 bits (336), Expect = 1e-34
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 11/143 (7%)
Query: 386 RVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTME 445
++F FDRVF ES +VY+ + P++ L GYN T+FAYGQT +GKTFTM
Sbjct: 33 LEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMS 92
Query: 446 GEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPT 505
G+ + +P GI+P A+ +F ++ D EF +RVS+LEIYNE++ DLLSP+
Sbjct: 93 GD---------EQEP--GIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPS 141
Query: 506 DDITKLRHTSEYTEEIEKLRRDL 528
++R + L ++
Sbjct: 142 PQELRIREDPNKGVVVAGLTEEI 164
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 299 bits (768), Expect = 2e-97
Identities = 133/287 (46%), Positives = 188/287 (65%), Gaps = 19/287 (6%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
TT DVY +V P++D+VL+GYN T+FAYGQTG+GKT+TMEG DP L GI
Sbjct: 55 TTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEG-PPGDPE-------LKGI 106
Query: 86 VPRAMNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
+PR ++ +F+ + + + EF V+VS+LEIY E++ DLL + D L++ ED K
Sbjct: 107 IPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKD--NLQVHED---KNRG 161
Query: 145 I-IQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGE 203
+ ++GL E+ V + +EV +++ +G R A+T MN SSRSH+IF IT+ ++N G
Sbjct: 162 VYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLK-QENVETGS 220
Query: 204 ELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP-HIPYR 262
+ + GKL LVDLAGSE + ++GA+ + EA IN+SL LG I AL + HIPYR
Sbjct: 221 K--KRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYR 278
Query: 263 ESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
+SKLTR+LQDSLGG ++T++I SP+ N ETLSTL + RAK I
Sbjct: 279 DSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325
Score = 142 bits (359), Expect = 9e-38
Identities = 66/150 (44%), Positives = 91/150 (60%), Gaps = 12/150 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PLN E S SIV ++I + KTF FDRVF + Q DVY +V P+
Sbjct: 12 PLNEKEELRGSKSIVKFPGEDTVSIAGSDD---GKTFSFDRVFPPNTTQEDVYNFVAKPI 68
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+D+VL+GYN T+FAYGQTG+GKT+TMEG DP L GI+PR ++ +F+ +
Sbjct: 69 VDDVLNGYNGTIFAYGQTGSGKTYTMEG-PPGDPE-------LKGIIPRIVHDIFEHISS 120
Query: 479 L-GDAEFTVRVSFLEIYNEELIDLLSPTDD 507
+ + EF V+VS+LEIY E++ DLL + D
Sbjct: 121 MDENLEFHVKVSYLEIYMEKIRDLLDVSKD 150
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 285 bits (732), Expect = 8e-92
Identities = 134/290 (46%), Positives = 180/290 (62%), Gaps = 19/290 (6%)
Query: 24 FYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS 83
+T +VY+ PL+D VL+GYN TVFAYG TG GKT TM G +DP
Sbjct: 64 ETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD-SDP---------- 112
Query: 84 GIVPRAMNHLFDELRLLGDA-EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKG 142
G++ M LFD++ D EF V +S+LEIYNE + DLLSP+ +LR ED
Sbjct: 113 GLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELR--EDP--NQ 168
Query: 143 SVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDG 202
+++ GL E + +E+ ++L KG++ R T NA SSRSH + IT+ KD +
Sbjct: 169 GIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASI 228
Query: 203 EELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTPHI 259
+ +R GKL+L+DLAGSE + + +R +E NIN+SLL LG CI ALV+ K HI
Sbjct: 229 NQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHI 288
Query: 260 PYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
PYR+SKLTRLL+DSLGG KT +IA +SP+ + EET +TL YA+RAKNI
Sbjct: 289 PYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338
Score = 125 bits (316), Expect = 1e-31
Identities = 61/165 (36%), Positives = 84/165 (50%), Gaps = 22/165 (13%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-----EITIKERVNDKIS-----KTFGFDRVFSQESKQV 408
P N E+ + +V R ++ + + + FDRVF + S Q
Sbjct: 10 PFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQE 69
Query: 409 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 468
+VY+ PL+D VL+GYN TVFAYG TG GKT TM G +DP G++
Sbjct: 70 EVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD-SDP----------GLMVLT 118
Query: 469 MNHLFDELRLLGDA-EFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
M LFD++ D EF V +S+LEIYNE + DLLSP+ +LR
Sbjct: 119 MKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELR 163
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 286 bits (734), Expect = 3e-89
Identities = 137/295 (46%), Positives = 182/295 (61%), Gaps = 21/295 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DVY+ + PLID +L GYNCTVFAYGQTG+GKT+TM G + GI+P +
Sbjct: 72 DVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEE-----------PGIIPLS 120
Query: 90 MNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ LF +L L +F V +S+LEIYNE++ DLLSP + L V + G
Sbjct: 121 LKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPN----EESLNIREDSLLGVKVAG 176
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L EK V +K+E+ +L KG + R TA+T +N SSRSH+IF I + K+ T
Sbjct: 177 LTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSG---TSET 233
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP--HIPYRESKL 266
KL+LVDLAGSE R+G + R +E +IN+SLLTLG I AL +K HIPYRESKL
Sbjct: 234 SKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKL 293
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSK 321
TRLLQDSLGG T +I T+SP+ + EET++TL +A RAK+I N+ ++N
Sbjct: 294 TRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDS 348
Score = 124 bits (313), Expect = 4e-30
Identities = 57/139 (41%), Positives = 81/139 (58%), Gaps = 12/139 (8%)
Query: 387 VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446
+ T+ FD+VF + Q DVY+ + PLID +L GYNCTVFAYGQTG+GKT+TM G
Sbjct: 50 LEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSG 109
Query: 447 EKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPT 505
+ GI+P ++ LF +L L +F V +S+LEIYNE++ DLLSP
Sbjct: 110 TEEE-----------PGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPN 158
Query: 506 DDITKLRHTSEYTEEIEKL 524
++ +R S ++ L
Sbjct: 159 EESLNIREDSLLGVKVAGL 177
Score = 43.6 bits (103), Expect = 3e-04
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 29/208 (13%)
Query: 52 FAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAE--FTVRV 109
FAY Q+ +T T++ + I+ ++ F+ +LL + + +
Sbjct: 386 FAYMQSLKKETETLK-------------SRIDLIMKSIISGTFERKKLLKEEGWKYKSTL 432
Query: 110 SFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQ 169
FL I + L+ L +L + K + + L +E +E
Sbjct: 433 QFLRIEIDRLLLLRE-----EELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEKA 487
Query: 170 K--RQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLAGSENIGRSGA 227
R +A+T +N SSRSH+ F NS E LN VDLAGSE S +
Sbjct: 488 SKLRSSASTKLNLRSSRSHSKFRD-HLNGSNSSTKELS-----LNQVDLAGSE-RKVSQS 540
Query: 228 QDKRAREAGNINQSLLTLGRCITALVEK 255
+ RE ++N+SL +LG I AL K
Sbjct: 541 VGELLRETQSLNKSLSSLGDVIHALGSK 568
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 278 bits (713), Expect = 7e-89
Identities = 123/306 (40%), Positives = 179/306 (58%), Gaps = 29/306 (9%)
Query: 25 YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSG 84
Y + DV++ + L+D GYN +FAYGQTG+GK++TM G K G
Sbjct: 66 YASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEE-----------KG 114
Query: 85 IVPRAMNHLFDELRLLGDAE--FTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARK 141
I+PR LF + + + V VS++EIYNE++ DLL+P L++ E
Sbjct: 115 IIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVL- 173
Query: 142 GSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTIT---IHIKDN 198
++ L + AV + +++ +LE+G++ R TA+T MN SSRSH +FTI +
Sbjct: 174 -GPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE 232
Query: 199 SLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---- 254
+ E + K++LVDLAGSE +GA+ R +E NIN+SL TLG+ I+AL +
Sbjct: 233 TDLTTE--KVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSA 290
Query: 255 ----KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNIT 310
K+ IPYR+S LT LL+++LGG +KT++IAT+SPA +N EETLSTL YA RAK I
Sbjct: 291 KSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIV 350
Query: 311 NRPEIN 316
N +N
Sbjct: 351 NVAVVN 356
Score = 108 bits (273), Expect = 6e-26
Identities = 55/161 (34%), Positives = 79/161 (49%), Gaps = 25/161 (15%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIK----ERVNDKISKTFGFDRVF-SQESK------Q 407
P NS E+ S IV + T+K K K+F FD + S +S+ Q
Sbjct: 11 PFNSREKNRGSKCIVQ-MPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQ 69
Query: 408 VDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPR 467
DV++ + L+D GYN +FAYGQTG+GK++TM G K GI+PR
Sbjct: 70 EDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEE-----------KGIIPR 118
Query: 468 AMNHLFDELRLLGDAE--FTVRVSFLEIYNEELIDLLSPTD 506
LF + + + V VS++EIYNE++ DLL+P
Sbjct: 119 LCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 256 bits (655), Expect = 1e-80
Identities = 138/289 (47%), Positives = 183/289 (63%), Gaps = 17/289 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DV++ V PL+++ LSGYN ++FAYGQTG+GKT+TM G S S L G++PR
Sbjct: 57 DVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSS---SDDESPHGLQGVIPRI 113
Query: 90 MNHLF-----DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
+LF +E + +F + SFLEIYNE++ DLL PT K+R + +KG V
Sbjct: 114 FEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIR---EDIKKG-V 169
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
++ L E+ V + ++VY++L KG R+ AAT MN+ SSRSH +FT TI +
Sbjct: 170 YVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKK-ASST 228
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE----KTPHIP 260
+RT +LNLVDLAGSE GA+ R +EA NIN+SL TLG I ALV+ K H+P
Sbjct: 229 NIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVP 288
Query: 261 YRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
YR+SKLT LL+DSLGG KT+IIA VSP+ ETLSTL +A RAK I
Sbjct: 289 YRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337
Score = 109 bits (274), Expect = 3e-26
Identities = 58/159 (36%), Positives = 83/159 (52%), Gaps = 12/159 (7%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
P N +E + SS + + + F FD V + Q DV++ V PL
Sbjct: 11 PPNEIEADGGQGQCLKKLSSDTL----VWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPL 66
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLF----- 473
+++ LSGYN ++FAYGQTG+GKT+TM G S S L G++PR +LF
Sbjct: 67 VEDCLSGYNGSIFAYGQTGSGKTYTMMGPSS---SDDESPHGLQGVIPRIFEYLFSLIQR 123
Query: 474 DELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+E + +F + SFLEIYNE++ DLL PT K+R
Sbjct: 124 EEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIR 162
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 252 bits (645), Expect = 4e-79
Identities = 119/280 (42%), Positives = 158/280 (56%), Gaps = 26/280 (9%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
+VY+ V PLI V G T FAYGQTG+GKT+TM G D+ G+ A
Sbjct: 67 EVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLG-----------DENQEGLYALA 115
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
+F L D + V VSF EIY +L DLL+ D +L + ED KG+V I GL
Sbjct: 116 ARDIFRLLAQPND-DLGVTVSFFEIYGGKLFDLLN---DRKRLSVLEDG--KGNVQIVGL 169
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITI-HIKDNSLDGEELLRT 208
EK V + DE+ +++E G+ R T +T N SSRSH I I + + K N L G
Sbjct: 170 TEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLNKLLG------ 223
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRESKLT 267
KL+ +DLAGSE + D++ R E IN+SLL L CI AL H+P+R SKLT
Sbjct: 224 -KLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLT 282
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
++L+DS G +KT +IAT+SP+ + E TL+TL YA R K
Sbjct: 283 QVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322
Score = 113 bits (285), Expect = 9e-28
Identities = 56/153 (36%), Positives = 75/153 (49%), Gaps = 18/153 (11%)
Query: 357 KMPLNSVERAAKSCSIVDCSSSREITIKE-RVNDKISK-----TFGFDRVFSQESKQVDV 410
K PLN E + +V C S+ +T+ E + ++K TF FD VF + +V
Sbjct: 9 KRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEV 68
Query: 411 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470
Y+ V PLI V G T FAYGQTG+GKT+TM G D+ G+ A
Sbjct: 69 YRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLG-----------DENQEGLYALAAR 117
Query: 471 HLFDELRLLGDAEFTVRVSFLEIYNEELIDLLS 503
+F L D + V VSF EIY +L DLL+
Sbjct: 118 DIFRLLAQPND-DLGVTVSFFEIYGGKLFDLLN 149
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 241 bits (616), Expect = 9e-75
Identities = 123/283 (43%), Positives = 172/283 (60%), Gaps = 16/283 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
+VY+ V P++D L GYN T+FAYGQTG GKTFTM G S++D G++PRA
Sbjct: 63 EVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTE-----SYKD---RGLIPRA 114
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPT----DDITKLRLFEDSARKGSVI 145
+ +F E+ + +TV VS+LEIYNE+L DLL T + + + + EDS + ++
Sbjct: 115 LEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDS--EQNIH 172
Query: 146 IQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEEL 205
++GL + ++E +L G R A T MN SSRSH IFTI + + G E+
Sbjct: 173 VKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSRE-AGSEV 231
Query: 206 LRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTP-HIPYRES 264
+R KLNLVDLAGSE + ++G + +EA IN+SL L + I AL EK H+PYR S
Sbjct: 232 VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNS 291
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
KLT +L+DSLGG KT ++AT+ N++ETLSTL +A R
Sbjct: 292 KLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334
Score = 118 bits (297), Expect = 2e-29
Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 9/121 (7%)
Query: 387 VNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEG 446
N + +F FD VF + Q +VY+ V P++D L GYN T+FAYGQTG GKTFTM G
Sbjct: 42 NNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG 100
Query: 447 EKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD 506
S++D G++PRA+ +F E+ + +TV VS+LEIYNE+L DLL T
Sbjct: 101 GTE-----SYKD---RGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTP 152
Query: 507 D 507
+
Sbjct: 153 E 153
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 222 bits (567), Expect = 8e-68
Identities = 109/278 (39%), Positives = 159/278 (57%), Gaps = 21/278 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
D++ V P++ +LSG N TVFAYG TG GKT TM G D G++PR
Sbjct: 63 DIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLG-----------DPNEPGLIPRT 111
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
++ L R +S+ EIYNE++ DLL P +L + ED + G+++I GL
Sbjct: 112 LSDLLRMGRKQAWT-GAFSMSYYEIYNEKVYDLLEPAK--KELPIRED--KDGNILIVGL 166
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
K + + E + S+ R AAT +N +SSRSH + I + + + G
Sbjct: 167 TSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKV-----TQPASNIQLEG 221
Query: 210 KLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRL 269
KLNL+DLAGSE+ R+G + R +E+ IN SL L + + AL + P IPYRESKLTRL
Sbjct: 222 KLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRL 281
Query: 270 LQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
LQDSLGG ++ ++A ++P + ++TLSTL++A R+K
Sbjct: 282 LQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319
Score = 92.1 bits (229), Expect = 2e-20
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 359 PLNSVERAAKSC-SIVD--CSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVV 415
P E + SC +D ++ + I+ N +K + FD + E Q D++ V
Sbjct: 10 PFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREV 69
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++ +LSG N TVFAYG TG GKT TM G D G++PR ++ L
Sbjct: 70 KPIVPHLLSGQNATVFAYGSTGAGKTHTMLG-----------DPNEPGLIPRTLSDLLRM 118
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTD 506
R +S+ EIYNE++ DLL P
Sbjct: 119 GRKQAWT-GAFSMSYYEIYNEKVYDLLEPAK 148
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 221 bits (566), Expect = 3e-67
Identities = 102/297 (34%), Positives = 163/297 (54%), Gaps = 33/297 (11%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
TT + ++ PL+ ++L G N +F YG T +GKT+TM+G + GI
Sbjct: 67 TTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGD-----------GGI 115
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK----LRLFEDSARK 141
+PR+++ +F+ + ++V VS++EIYN + DLL + TK LRL ED
Sbjct: 116 LPRSLDVIFNSIG-----GYSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLRED--HN 168
Query: 142 GSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITI-----HIK 196
G++ + GL E V + +E ++ ++G + R+ A T +N SSRSH++FTI +
Sbjct: 169 GNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSD 228
Query: 197 DNSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-- 254
+ ++ + +L+LVDLAGSE R+ +R +EAGNIN SL+TLG+CI L E
Sbjct: 229 GDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQ 288
Query: 255 ----KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
+PYR+SKLT L Q+ G K +I V+P + +ETL + ++ A+
Sbjct: 289 LSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345
Score = 92.4 bits (230), Expect = 2e-20
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 384 KERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFT 443
ER + F F +VF + Q + ++ PL+ ++L G N +F YG T +GKT+T
Sbjct: 46 SERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYT 105
Query: 444 MEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLS 503
M+G + GI+PR+++ +F+ + ++V VS++EIYN + DLL
Sbjct: 106 MQGSPGD-----------GGILPRSLDVIFNSIG-----GYSVFVSYVEIYNNYIYDLLE 149
Query: 504 PTDDITKLR 512
+ TK R
Sbjct: 150 DSPSSTKKR 158
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 232 bits (592), Expect = 2e-65
Identities = 139/345 (40%), Positives = 197/345 (57%), Gaps = 34/345 (9%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS-- 83
+T D+++ V PL++ L+G+N +VFAYGQTG+GKT+TM G P+ ++ LS
Sbjct: 144 STQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWG-----PANGLLEEHLSGD 198
Query: 84 --GIVPRAMNHLFDELR--LLGDAE----FTVRVSFLEIYNEELIDLLSPTDDITKLRLF 135
G+ PR LF + + A+ + R SFLEIYNE++ DLL P+ ++R
Sbjct: 199 QQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIR-- 256
Query: 136 EDSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHI 195
ED K V ++ L E+ V +V ++L KG R+T AT +NA SSRSH++FT +
Sbjct: 257 EDV--KSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVES 314
Query: 196 KDNSL-DGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE 254
+ S+ DG +T ++NLVDLAGSE +GA R +EAGNIN+SL LG I L E
Sbjct: 315 RCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAE 374
Query: 255 -----KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
K HIPYR+S+LT LLQ+SLGG K +++ +SP+Q ET STL +A RAK I
Sbjct: 375 ISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAI 434
Query: 310 TNRPEINQKMSKKALLRVTSIN-MEETLSTL-DYAHRAKNITNRP 352
N+ +N+ M +N + E + L D R K N P
Sbjct: 435 KNKAVVNEVMQD-------DVNFLREVIRQLRDELQRVKANGNNP 472
Score = 95.8 bits (238), Expect = 2e-20
Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 18/161 (11%)
Query: 380 EITIKERVNDKIS---KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQT 436
E+ +++ ND ++ +TF FD + ES Q D+++ V PL++ L+G+N +VFAYGQT
Sbjct: 116 EMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQT 175
Query: 437 GTGKTFTMEGEKSNDPSISWQDDPLS----GIVPRAMNHLFDELR--LLGDAE----FTV 486
G+GKT+TM G P+ ++ LS G+ PR LF + + A+ +
Sbjct: 176 GSGKTYTMWG-----PANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQC 230
Query: 487 RVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRRD 527
R SFLEIYNE++ DLL P+ ++R + +E L +
Sbjct: 231 RCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEE 271
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 173 bits (441), Expect = 3e-51
Identities = 71/131 (54%), Positives = 91/131 (69%)
Query: 158 DEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTGKLNLVDLA 217
+V +++KG+ R TAAT MN HSSRSH++F I K+ E + GK+NLVDLA
Sbjct: 56 TDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLA 115
Query: 218 GSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTRLLQDSLGGR 277
GSE I SGA+ R E NIN+SL TLG I+AL E+ H+PYRESKLTRLLQDSLGG
Sbjct: 116 GSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGN 175
Query: 278 TKTSIIATVSP 288
++T ++A +SP
Sbjct: 176 SRTLMVACISP 186
Score = 67.9 bits (166), Expect = 4e-13
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 24 FYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLS 83
+ V++ V PL+ L GYN +FAYGQTG+GKT+TMEG++ +
Sbjct: 1 VCVRVRPVFR-DVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR-----------EGA 48
Query: 84 GIVPRAMNHLFDELRLL 100
GI+PR + + D +
Sbjct: 49 GIIPRTVTDVIDLMDKG 65
Score = 65.6 bits (160), Expect = 2e-12
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 12/70 (17%)
Query: 410 VYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAM 469
V++ V PL+ L GYN +FAYGQTG+GKT+TMEG++ +GI+PR +
Sbjct: 8 VFR-DVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR-----------EGAGIIPRTV 55
Query: 470 NHLFDELRLL 479
+ D +
Sbjct: 56 TDVIDLMDKG 65
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (encoded by the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 522
Score = 48.6 bits (117), Expect = 6e-06
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 2 ALHQVTGLNTMMVVSVMFLVCIFYTTI 28
AL+QVTG+N + V ++ +VC FYTT+
Sbjct: 141 ALNQVTGINLWISVLIVGIVCTFYTTL 167
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 38.7 bits (91), Expect = 0.009
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 1 MALHQVTGLNTMMVVSVMFLVCIFYTTI 28
+AL VTG+N +++ +M ++ I YT +
Sbjct: 140 LALSAVTGINIYIIILLMGIITIIYTVL 167
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at SMVT
promoter loci. The cis regulatory elements, Kruppel-like
factor 4 and activator protein-2, regulate the activity
of the human SMVT promoter in the intestine.
Glycosylation of the hSMVT is important for its
transport function. This subgroup belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 527
Score = 34.8 bits (80), Expect = 0.14
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 1 MALHQVTGLNTMMVVSVMFLVCIFYTTI--------VDVYKYVV 36
+AL+ VTG N V M LVC YT + DV++ VV
Sbjct: 143 LALNAVTGFNLWGSVLAMGLVCTLYTALGGLKAVIWTDVFQTVV 186
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1
and 2 and related proteins; solute-binding domain.
SMCT1 is a high-affinity transporter of various
monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. Human SMCT1 (hSMCT1, also
called AIT) is encoded by the tumor suppressor gene
SLC5A8. SMCT1 is expressed in the colon, small
intestine, kidney, thyroid gland, retina, and brain.
SMCT1 may contribute to the intestinal/colonic and oral
absorption of monocarboxylate drugs. It also mediates
iodide transport from thyrocyte into the colloid lumen
in thyroid gland and, through transporting L-lactate and
ketone bodies, helps maintain the energy status and the
function of neurons. SMCT2 is a low-affinity transporter
for short-chain fatty acids, lactate, pyruvate, and
nicotinate. hSMCT2 is encoded by the SLC5A12 gene. SMCT2
is expressed in the kidney, small intestine, skeletal
muscle, and retina. In the kidney, SMCT2 may initiate
lactate absorption in the early parts of the tubule,
SMCT1 in the latter parts of the tubule. In the retina,
SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner. This subgroup belongs to the solute carrier 5
(SLC5) transporter family.
Length = 536
Score = 33.9 bits (78), Expect = 0.26
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Query: 1 MALHQVTGLNTMMVVSVMFLVCIFYTTI--------VDVYKYVV 36
+AL+QVTG + V +VC FY T+ DV++ +
Sbjct: 146 LALNQVTGFDLWGAVVATGVVCTFYCTLGGLKAVVWTDVFQVGI 189
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1
and related proteins; solute-binding domain. SMCT1 is a
high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty acids,
ketone bodies, nicotinate and its structural analogs,
pyroglutamate, benzoate and its derivatives, and iodide.
Human SMCT1 (hSMCT1, also called AIT) is encoded by the
tumor suppressor gene SLC5A8. Its expression is under
the control of the C/EBP transcription factor. Its
tumor-suppressive role is related to uptake of butyrate,
propionate, and pyruvate, these latter are inhibitors of
histone deacetylases. SMCT1 is expressed in the colon,
small intestine, kidney, thyroid gland, retina, and
brain. SMCT1 may contribute to the intestinal/colonic
and oral absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the
colloid lumen in thyroid gland and through transporting
l-lactate and ketone bodies helps maintain the energy
status and the function of neurons. In the kidney its
expression is limited to the S3 segment of the proximal
convoluted tubule (in contrast to the low-affinity
monocarboxylate transporter SMCT2, belonging to a
different family, which is expressed along the entire
length of the tubule). In the retina, SMCT1 and SMCT2
may play a differential role in monocarboxylate
transport in a cell type-specific manner, SMCT1 is
expressed predominantly in retinal neurons and in
retinal pigmented epithelial (RPE) cells. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 541
Score = 33.2 bits (76), Expect = 0.38
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1 MALHQVTGLNTMMVVSVMFLVCIFYTTI 28
+AL+QVTG + V +VC FY T+
Sbjct: 146 LALNQVTGFDLWGAVVATGVVCTFYCTL 173
>gnl|CDD|150577 pfam09921, DUF2153, Uncharacterized protein conserved in archaea
(DUF2153). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 126
Score = 30.8 bits (70), Expect = 0.71
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 23/74 (31%)
Query: 455 SWQDDP-LSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRH 513
W DP + +PR M L + V LE+ DI RH
Sbjct: 51 QWLQDPVIISHMPREM------LLDVWKTLREVLQKLLEL-------------DI---RH 88
Query: 514 TSEYTEEIEKLRRD 527
TS++ E + KL ++
Sbjct: 89 TSQFRELLSKLAKE 102
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related
proteins; solute-binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. NIS is expressed in the thyroid,
colon, ovary, and in human breast cancers. It mediates
the active transport and the concentration of iodide
from the blood into thyroid follicular cells, a
fundamental step in thyroid hormone biosynthesis, and is
the basis of radioiodine therapy for thyroid cancer.
Mutation in the SLC5A5 gene can result in a form of
thyroid hormone dysgenesis. Human NIS exists mainly as a
dimer stabilized by a disulfide bridge. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 535
Score = 32.1 bits (73), Expect = 0.79
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Query: 3 LHQVTGLNTMMVVSVMFLVCIFYTTI--------VDVYKYVVNPLIDEVLSGYNCTVFAY 54
L+QVTGL+ + +C FYTT+ DV++ VV +LSG+ V
Sbjct: 142 LNQVTGLDIWASLLSTGAICTFYTTVGGMKAVIWTDVFQVVV------MLSGF-WAVLIR 194
Query: 55 G 55
G
Sbjct: 195 G 195
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 31.0 bits (70), Expect = 0.82
Identities = 26/123 (21%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
Query: 418 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL- 476
+ SG +V G +GTGKT + + + D P A + EL
Sbjct: 15 ALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELL 74
Query: 477 RLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRR------DLQA 530
R L + L + E L+ L + + R DLQ
Sbjct: 75 RQLLRE----LAAELLLLREALLAALGAELIEGLQDLVELLERLLARARPLVLVLDDLQW 130
Query: 531 ARE 533
A E
Sbjct: 131 ADE 133
Score = 29.5 bits (66), Expect = 2.5
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 39 LIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL- 97
+ SG +V G +GTGKT + + + D P A + EL
Sbjct: 15 ALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELL 74
Query: 98 RLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSAR 140
R L + L + E L+ L L E R
Sbjct: 75 RQLLRE----LAAELLLLREALLAALGAELIEGLQDLVELLER 113
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 32.1 bits (74), Expect = 0.91
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 121 DLLSPTDDITKLRLFE---DSAR-KGSVIIQGLEEKAVHNKD 158
D+L P DDIT FE + R G V++ G+E K + D
Sbjct: 356 DVLGPNDDIT---RFEYLKKNNRETGPVLV-GIELKDAEDYD 393
>gnl|CDD|220594 pfam10136, SpecificRecomb, Site-specific recombinase. Members of
this family of bacterial proteins are found in various
putative site-specific recombinase transmembrane
proteins.
Length = 647
Score = 31.0 bits (71), Expect = 2.0
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 15/112 (13%)
Query: 454 ISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRH 513
++ +P V R L D + +L +V+ + EL L +
Sbjct: 135 LAEPPEPDDDAVARWRAELLDAITVL-----AYQVAATGLE-PELRRRLPELAE-----E 183
Query: 514 TSEY---TEEIEKLR-RDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKK 561
S + E+E L A R + + + ++++ V V K
Sbjct: 184 DSPFVALQREVEALLAAYRAADRTGDALDEDLAHLRVLLDQCRDAVDRVYKH 235
Score = 30.2 bits (69), Expect = 3.7
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 75 ISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDD 128
++ +P V R L D + +L +V+ + EL L +
Sbjct: 135 LAEPPEPDDDAVARWRAELLDAITVL-----AYQVAATGLE-PELRRRLPELAE 182
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 30.2 bits (69), Expect = 2.7
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 151 EKAVHNKDEVYKILEKGSQK--RQTAATL 177
+ + V +IL+ GS+K A TL
Sbjct: 292 AEFAKDPGYVLEILKAGSEKAREVAAQTL 320
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 30.1 bits (68), Expect = 2.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 9 LNTMMVVSVMFLVCIFYTTIVDVYKYVVNPLIDEVLSG 46
LN ++ V V+FL +++ D+Y V PLI ++ G
Sbjct: 21 LNCIIAVLVIFLALVYFAN--DIYHLVSAPLIKQLPQG 56
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 30.4 bits (70), Expect = 3.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 55 GQTGTGKTFTM 65
G TG+GKTFTM
Sbjct: 39 GVTGSGKTFTM 49
Score = 30.4 bits (70), Expect = 3.2
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 434 GQTGTGKTFTM 444
G TG+GKTFTM
Sbjct: 39 GVTGSGKTFTM 49
>gnl|CDD|218448 pfam05125, Phage_cap_P2, Phage major capsid protein, P2 family.
Length = 333
Score = 29.8 bits (67), Expect = 4.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 508 ITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQM----VNELYAEVTSVEK 560
+T L++ S Y ++ E RR L+ EK+ V ENY+ V E Y +E
Sbjct: 279 VTTLKNLSIYYQD-ESHRRSLKENPEKDRV----ENYESSNDDYVVEDYGLGCLLEN 330
>gnl|CDD|225763 COG3222, COG3222, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 211
Score = 29.0 bits (65), Expect = 4.8
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 276 GRTKTSIIA---TVSPAQLNMEETLSTLDYAHRAKNITNRP 313
G+TKT + A+L + TLD A
Sbjct: 17 GKTKTRLAPAIGDKGAAKLQRQLLEDTLDAVAAAPVTARAV 57
>gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 579
Score = 29.5 bits (66), Expect = 5.9
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 199 SLDGEELLRTGKLNL----VDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE 254
+L G LRT L L D + A + A EAG + S+ +T
Sbjct: 154 ALLGHSALRTAVLGLDRATDDPPTEAELAAMAALLREALEAGALGMSMDAAIDKLTGDRY 213
Query: 255 KTPHIPYRESKLTRLL 270
+ +P+ +L RL
Sbjct: 214 PSRALPFATWELRRLA 229
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2
and related proteins; solute-binding domain. SMCT2 is a
low-affinity transporter for short-chain fatty acids,
lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2)
is encoded by the SLC5A12 gene. SMCT2 is expressed in
the kidney, small intestine, skeletal muscle, and
retina. In the kidney, it is expressed in the apical
membrane of the proximal convoluted tubule, along the
entire length of the tubule (in contrast to the
high-affinity monocarboxylate transporter SMCT1,
belonging to a different family, which is limited to the
S3 segment of the tubule). SMCT2 may initiate lactate
absorption in the early parts of the tubule. In the
retina, SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner, SMCT2 is expressed exclusively in Muller cells.
Nicotine transport by hSMCT2 is inhibited by several
non-steroidal anti-inflammatory drugs. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 529
Score = 29.4 bits (66), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1 MALHQVTGLNTMMVVSVMFLVCIFYTTI 28
+AL+QVTG + V +VC FY T+
Sbjct: 146 LALNQVTGFDLWGSVFATGIVCTFYCTL 173
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 28.4 bits (64), Expect = 6.2
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 40 IDEVLSGYNCTVFAYGQTGTGKT 62
I +LSG + V TG+GKT
Sbjct: 8 IPAILSGKD--VLVQAPTGSGKT 28
Score = 28.4 bits (64), Expect = 6.2
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 419 IDEVLSGYNCTVFAYGQTGTGKT 441
I +LSG + V TG+GKT
Sbjct: 8 IPAILSGKD--VLVQAPTGSGKT 28
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 29.1 bits (65), Expect = 6.5
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 379 REITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLID--EVLSGYNCTVFAYGQT 436
E T++E + F R F +++++ V+ L++ + S + V A
Sbjct: 90 PEFTVRENL-------LVFGRYFGMSTREIEA---VIPSLLEFARLESKADVRV-ALLSG 138
Query: 437 GTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLL 479
G + T+ NDP + D+P +G+ P A + +++ LR L
Sbjct: 139 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSL 181
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 28.9 bits (65), Expect = 6.7
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 451 DPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
P + + D+P +G+ PR ++D +R L + T+ L + E D L D I
Sbjct: 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI---LLTTHYMEEADKLC--DRIAI 196
Query: 511 LRH 513
+ H
Sbjct: 197 IDH 199
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 29.5 bits (67), Expect = 6.8
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 491 LEIYNEELIDLLSPTDDIT--------KLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAE 542
LE +EL +L D+ ++ + EEIE++R +L+ A + + AAE
Sbjct: 436 LEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAE 495
Query: 543 -NYDQMVNELYAEVTSVEKKSSS 564
Y ++ EL + + E K
Sbjct: 496 LQYGKLP-ELEKRLQAAEAKLGE 517
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6
family in eukaryotes. Several members may be found in
genome and interact with each other [DNA metabolism,
DNA replication, recombination, and repair].
Length = 365
Score = 28.8 bits (65), Expect = 8.0
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 51 VFAYGQTGTGKT 62
VF YG+TGTGKT
Sbjct: 43 VFIYGKTGTGKT 54
Score = 28.8 bits (65), Expect = 8.0
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 430 VFAYGQTGTGKT 441
VF YG+TGTGKT
Sbjct: 43 VFIYGKTGTGKT 54
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair
complex [DNA replication, recombination, and repair].
Length = 663
Score = 28.7 bits (65), Expect = 9.4
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 55 GQTGTGKTFTM 65
G TG+GKTFTM
Sbjct: 39 GVTGSGKTFTM 49
Score = 28.7 bits (65), Expect = 9.4
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 434 GQTGTGKTFTM 444
G TG+GKTFTM
Sbjct: 39 GVTGSGKTFTM 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.364
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,550,782
Number of extensions: 2945560
Number of successful extensions: 3275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3158
Number of HSP's successfully gapped: 112
Length of query: 583
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 481
Effective length of database: 6,413,494
Effective search space: 3084890614
Effective search space used: 3084890614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)