RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9448
(583 letters)
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 519 bits (1338), Expect = 0.0
Identities = 198/293 (67%), Positives = 252/293 (86%), Gaps = 3/293 (1%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DVY VV+PLI+EVL+GYNCTVFAYGQTGTGKT TM G ++ + SW+DD GI+PRA
Sbjct: 83 DVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRA 142
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
++HLFDELR++ + E+T+R+S+LE+YNEEL DLLS DD TK+R+F+DS +KGSVIIQGL
Sbjct: 143 LSHLFDELRMM-EVEYTMRISYLELYNEELCDLLST-DDTTKIRIFDDSTKKGSVIIQGL 200
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
EE VH+KD+VYK+LEKG ++R+TA TLMNA SSRSHT+F+I +HI++N ++GE++L+ G
Sbjct: 201 EEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIG 260
Query: 210 KLNLVDLAGSENIGRSGAQDK-RAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTR 268
KLNLVDLAGSEN+ ++G + R RE NINQSLLTLGR ITALV++ PH+PYRESKLTR
Sbjct: 261 KLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTR 320
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSK 321
LLQ+SLGGRTKTSIIAT+SP ++EETLSTL+YAHRAKNI N+PE+NQK++K
Sbjct: 321 LLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLTK 373
Score = 215 bits (551), Expect = 6e-65
Identities = 89/154 (57%), Positives = 116/154 (75%), Gaps = 2/154 (1%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PLNS ER +S +VD RE+ + ++ K++K F FDR F ESKQ DVY VV+PL
Sbjct: 33 PLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPL 92
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
I+EVL+GYNCTVFAYGQTGTGKT TM G ++ + SW+DD GI+PRA++HLFDELR+
Sbjct: 93 IEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM 152
Query: 479 LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+ + E+T+R+S+LE+YNEEL DLLS DD TK+R
Sbjct: 153 M-EVEYTMRISYLELYNEELCDLLST-DDTTKIR 184
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 517 bits (1335), Expect = 0.0
Identities = 206/290 (71%), Positives = 256/290 (88%), Gaps = 2/290 (0%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR
Sbjct: 71 DVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRT 130
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSVIIQG 148
++ +F++L EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K VII+G
Sbjct: 131 LHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKG 189
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
LEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEEL++
Sbjct: 190 LEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKI 249
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTR 268
GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRESKLTR
Sbjct: 250 GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTR 309
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQK 318
+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+PE+NQK
Sbjct: 310 ILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQK 359
Score = 205 bits (524), Expect = 4e-61
Identities = 79/155 (50%), Positives = 113/155 (72%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIKE--RVNDKISKTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + KT+ FD VF +KQ+DVY+ VV
Sbjct: 18 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 77
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F++
Sbjct: 78 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEK 137
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
L EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 138 LT-DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSE 171
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 481 bits (1241), Expect = e-168
Identities = 147/298 (49%), Positives = 191/298 (64%), Gaps = 13/298 (4%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
++Y PL+D VL G+N T+FAYGQTGTGKT+TMEG + D G++P +
Sbjct: 84 ELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIR--------GDPEKRGVIPNS 135
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
+H+F + + ++ VR S+LEIY EE+ DLLS D +L L E V ++ L
Sbjct: 136 FDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSK-DQTKRLELKERP--DTGVYVKDL 192
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRTG 209
+ E+ ++ G+Q R AT MN HSSRSH IF ITI + LDGE +R G
Sbjct: 193 SSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVG 252
Query: 210 KLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-KTPHIPYRESKLTR 268
KLNLVDLAGSE ++GAQ +R +EA IN SL LG I+ALV+ K+ HIPYR+SKLTR
Sbjct: 253 KLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTR 312
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
LLQDSLGG KT ++A V PA N+EETL+TL YA+RAKNI N+P +N+ K ALLR
Sbjct: 313 LLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDP-KDALLR 369
Score = 192 bits (490), Expect = 5e-56
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 12/157 (7%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYVV 415
P+N E+AA +VD ++++K + ++ KTF FD V+ +KQ ++Y
Sbjct: 31 PMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETF 90
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
PL+D VL G+N T+FAYGQTGTGKT+TMEG + D G++P + +H+F
Sbjct: 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIR--------GDPEKRGVIPNSFDHIFTH 142
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+ + ++ VR S+LEIY EE+ DLLS D +L
Sbjct: 143 ISRSQNQQYLVRASYLEIYQEEIRDLLSK-DQTKRLE 178
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 463 bits (1193), Expect = e-161
Identities = 119/299 (39%), Positives = 179/299 (59%), Gaps = 17/299 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
VY ++ +VL+GYN T+FAYGQT +GKT TMEG D GI+PR
Sbjct: 67 KVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEG--------VIGDSVKQGIIPRI 118
Query: 90 MNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+N +F+ + + + EF ++VS+ EIY +++ DLL + L + ED ++G
Sbjct: 119 VNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK--VNLSVHEDK--NRVPYVKG 174
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
E+ V + ++V++++E+G R A T MN HSSRSH++F I + ++ + +
Sbjct: 175 ATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQEN---LENQKKLS 231
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-KTPHIPYRESKLT 267
GKL LVDLAGSE + ++GA+ EA NIN+SL LG I+AL + HIPYR+SKLT
Sbjct: 232 GKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLT 291
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
R+LQ+SLGG +T+I+ SPA N ET STLD+ RAK + N +N++++ + R
Sbjct: 292 RILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKR 350
Score = 186 bits (475), Expect = 6e-54
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 13/155 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PLN E A S +V ++ +E K + FD+VF + Q VY +
Sbjct: 21 PLNDSEEKAGSKFVVKFPNNV----EENCISIAGKVYLFDKVFKPNASQEKVYNEAAKSI 76
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+ +VL+GYN T+FAYGQT +GKT TMEG D GI+PR +N +F+ +
Sbjct: 77 VTDVLAGYNGTIFAYGQTSSGKTHTMEG--------VIGDSVKQGIIPRIVNDIFNHIYA 128
Query: 479 L-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+ + EF ++VS+ EIY +++ DLL + +
Sbjct: 129 MEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVH 163
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 462 bits (1192), Expect = e-161
Identities = 128/299 (42%), Positives = 189/299 (63%), Gaps = 16/299 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
D++ + + P +D++L+GYN TVFAYGQTG GK++TM G +DP G++PR
Sbjct: 63 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD-------GRGVIPRI 115
Query: 90 MNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ +F + + E+TVRVS++EIY E + DLL+P + L + E+ V ++G
Sbjct: 116 VEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN--DNLPVHEEK--NRGVYVKG 171
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L E V + EVY+++ +G R AAT MN SSRSH+IF ITI K+ ++
Sbjct: 172 LLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSA---KS 228
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-KTPHIPYRESKLT 267
G+L LVDLAGSE +G++GA + EA IN+SL LG I AL + K+ H+PYR+SKLT
Sbjct: 229 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLT 288
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
R+LQ+SLGG ++T++I SP+ N ETLSTL + RAK+I N+ ++N ++S L +
Sbjct: 289 RILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQ 347
Score = 188 bits (479), Expect = 1e-54
Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 11/155 (7%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
P N VE + IV T+ + + +F FDRVF KQ D++ + + P
Sbjct: 16 PQNRVEIESGGQPIVTFQGPDTCTVD---SKEAQGSFTFDRVFDMSCKQSDIFDFSIKPT 72
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+D++L+GYN TVFAYGQTG GK++TM G +DP G++PR + +F +
Sbjct: 73 VDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD-------GRGVIPRIVEQIFTSILS 125
Query: 479 L-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+ E+TVRVS++EIY E + DLL+P +D +
Sbjct: 126 SAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVH 160
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 459 bits (1184), Expect = e-160
Identities = 132/296 (44%), Positives = 173/296 (58%), Gaps = 18/296 (6%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
+++ PLID VL G+N T+FAYGQTG GKT+TM G + G +P +
Sbjct: 72 GIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG-----------NKEEPGAIPNS 120
Query: 90 MNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
HLFD + + F V S+LE+YNEE+ DL+ TKL L ED + + G
Sbjct: 121 FKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN---TKLPLKEDK--TRGIYVDG 175
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L V E+ +++KG R AAT MN SSRSH+IF + I + + +E++R
Sbjct: 176 LSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVI-ENKEVIRV 234
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTR 268
GKLNLVDLAGSE ++GA + E IN SL LG I+ LVE HIPYR+SKLTR
Sbjct: 235 GKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTR 294
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKAL 324
LLQDSLGG +KT + A +SPA N +ET+STL YA RAK I N+P IN+ +
Sbjct: 295 LLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
Score = 177 bits (452), Expect = 6e-51
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITI--------KERVNDKISKTFGFDRVFSQESKQVDV 410
PLN+ E + +I+ + I K+ +TF FD V+ Q S +
Sbjct: 14 PLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGI 73
Query: 411 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470
++ PLID VL G+N T+FAYGQTG GKT+TM G + G +P +
Sbjct: 74 FQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGG-----------NKEEPGAIPNSFK 122
Query: 471 HLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
HLFD + + F V S+LE+YNEE+ DL+ + L+
Sbjct: 123 HLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKL-PLK 164
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 453 bits (1169), Expect = e-158
Identities = 121/286 (42%), Positives = 170/286 (59%), Gaps = 15/286 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
VY+ V PL++ G+N TVFAYGQTG+GKT+TM + GIVPRA
Sbjct: 66 AVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS-----LLEDEQGIVPRA 120
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
M F + + V VS+LE+Y EE DLL ++L ED +G+V++ G+
Sbjct: 121 MAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDE--RGNVVLCGV 178
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNS-----LDGEE 204
+E V DEV +LE G+ R T AT +N SSRSHT+FT+T+ + +
Sbjct: 179 KEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPG 238
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTPHIPY 261
L K + VDLAGSE + ++G+ +R +E+ IN SLL LG I+AL + + HIPY
Sbjct: 239 QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPY 298
Query: 262 RESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
R+SK+TR+L+DSLGG KT +IA VSP+ + +ETL+TL+YA RA+
Sbjct: 299 RDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 194 bits (495), Expect = 5e-57
Identities = 50/154 (32%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PL E S + R + FGF V ++++ Q VY+ V PL
Sbjct: 21 PLLPKELLHGHQSCLQVEPGLGRVTLGR-----DRHFGFHVVLAEDAGQEAVYQACVQPL 75
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
++ G+N TVFAYGQTG+GKT+TM + GIVPRAM F +
Sbjct: 76 LEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS-----LLEDEQGIVPRAMAEAFKLIDE 130
Query: 479 LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+ V VS+LE+Y EE DLL ++
Sbjct: 131 NDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQ 164
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 455 bits (1173), Expect = e-157
Identities = 112/299 (37%), Positives = 169/299 (56%), Gaps = 21/299 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
D+Y V P++ +L G N +V AYG TG GKT TM G + P G++PRA
Sbjct: 81 DIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS---------PEQP--GVIPRA 129
Query: 90 MNHLFDELRLLGDA----EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVI 145
+ L R G +V +S+LEIY E+++DLL P L + ED +G+++
Sbjct: 130 LMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG--DLVIREDC--RGNIL 185
Query: 146 IQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEEL 205
I GL +K + + + + S+ R AT +N SSRSH + + + ++ +
Sbjct: 186 IPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQ- 244
Query: 206 LRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESK 265
R GKL L+DLAGSE+ R+G + R +E+G IN SL LG+ + AL + P +PYR+SK
Sbjct: 245 -REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSK 303
Query: 266 LTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKAL 324
LTRLLQDSLGG + +IA ++P + +T+S L++A R+K + NRP N+ + AL
Sbjct: 304 LTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHAL 362
Score = 188 bits (480), Expect = 2e-54
Identities = 49/158 (31%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
P A V S + I N + + + FD + + S Q D+Y V P+
Sbjct: 31 PFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPI 90
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+ +L G N +V AYG TG GKT TM G + P G++PRA+ L R
Sbjct: 91 LRHLLEGQNASVLAYGPTGAGKTHTMLGS---------PEQP--GVIPRALMDLLQLTRE 139
Query: 479 LGDA----EFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
G +V +S+LEIY E+++DLL P +R
Sbjct: 140 EGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIR 177
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 449 bits (1157), Expect = e-156
Identities = 93/296 (31%), Positives = 153/296 (51%), Gaps = 27/296 (9%)
Query: 25 YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSG 84
+ ++Y+ ++ PL+D++L G+ CT AYGQTGTGK+++M + G
Sbjct: 72 TISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGE-----ILPEHLG 126
Query: 85 IVPRAMNHLFDELRLLGD---AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARK 141
I+PRA+ +F+ + + V SF+EIYNE+ DLL T
Sbjct: 127 ILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH----------MPM 176
Query: 142 GSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLD 201
+ Q +H++ +++ ILE G++ R+ T MN++SSRSH I TI +
Sbjct: 177 VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV-------- 228
Query: 202 GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPY 261
+ ++N+VDLAGSE + R+G + +E NIN LL++ + + ++ IPY
Sbjct: 229 -KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPY 287
Query: 262 RESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQ 317
R+S LT +LQ SL ++ + +A +SP Q ++ ETLSTL + AK +
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHHHHH 343
Score = 181 bits (461), Expect = 3e-52
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
P + + S ++ F FD F Q ++Y+ ++ PL
Sbjct: 32 PYRQFLGRREPSVVQFPPWSDGKSLIVD-----QNEFHFDHAFPATISQDEMYQALILPL 86
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+D++L G+ CT AYGQTGTGK+++M + GI+PRA+ +F+ +
Sbjct: 87 VDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGE-----ILPEHLGILPRALGDIFERVTA 141
Query: 479 LGD---AEFTVRVSFLEIYNEELIDLLSPTDD 507
+ V SF+EIYNE+ DLL T
Sbjct: 142 RQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 439 bits (1132), Expect = e-152
Identities = 117/281 (41%), Positives = 166/281 (59%), Gaps = 16/281 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
VY ++ +VL GYN T+FAYGQT +GKT TMEG+ D GI+PR
Sbjct: 60 QVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH--------DPEGMGIIPRI 111
Query: 90 MNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ +F+ + + + EF ++VS+ EIY +++ DLL T L + ED ++G
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDV--SKTNLSVHEDK--NRVPYVKG 167
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
E+ V + DEV +++G R A T MN HSSRSH+IF I + ++ E +
Sbjct: 168 CTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQEN---TQTEQKLS 224
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTR 268
GKL LVDLAGSE + ++GA+ EA NIN+SL LG I+AL E + ++PYR+SK+TR
Sbjct: 225 GKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTR 284
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
+LQDSLGG +T+I+ SP+ N ET STL + RAK I
Sbjct: 285 ILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Score = 185 bits (473), Expect = 4e-54
Identities = 51/155 (32%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PLN E I + I SK + FDRVF + Q VY +
Sbjct: 17 PLNESEVNRGDKYIAKFQGEDTVVIA-------SKPYAFDRVFQSSTSQEQVYNDCAKKI 69
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+ +VL GYN T+FAYGQT +GKT TMEG D GI+PR + +F+ +
Sbjct: 70 VKDVLEGYNGTIFAYGQTSSGKTHTMEG--------KLHDPEGMGIIPRIVQDIFNYIYS 121
Query: 479 L-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+ + EF ++VS+ EIY +++ DLL + +
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVH 156
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 433 bits (1116), Expect = e-149
Identities = 99/298 (33%), Positives = 152/298 (51%), Gaps = 20/298 (6%)
Query: 30 DVYKYVVNPLIDEVL-SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPR 88
VY+ + PLI ++ +G C+ FAYGQTG+GKT+TM G + + GI
Sbjct: 66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQP------YGQSDTPGIFQY 119
Query: 89 AMNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
A +F L + D + +SF EIY +L DLL + E+ K V+++
Sbjct: 120 AAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK---MVAALENG--KKEVVVK 174
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
L+ V K+E+ + G R+ N SSRSH I I + D +
Sbjct: 175 DLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK------DINKNTS 228
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
GK+ +DLAGSE + +Q+K+ + + NIN+SLL L CI A+ HIP+R+S+L
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSEL 288
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKAL 324
T++L+D G++K+ +IA +SP E+TL+TL Y+ R KN N + + L
Sbjct: 289 TKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLL 346
Score = 179 bits (457), Expect = 2e-51
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVYK 412
PL+ +E+ K I+ ++ + I E F D+VF VY+
Sbjct: 10 PLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYE 69
Query: 413 YVVNPLIDEVL-SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 471
+ PLI ++ +G C+ FAYGQTG+GKT+TM G + + GI A
Sbjct: 70 NTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQ------PYGQSDTPGIFQYAAGD 123
Query: 472 LFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTD 506
+F L + D + +SF EIY +L DLL
Sbjct: 124 IFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK 159
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 432 bits (1112), Expect = e-149
Identities = 112/285 (39%), Positives = 162/285 (56%), Gaps = 17/285 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
VY+ V ++ + L GYN T+ YGQTG GKT+TM G + ++ GI+PRA
Sbjct: 86 LVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG--------ATENYKHRGILPRA 137
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPT----DDITKLRLFEDSARKGSVI 145
+ +F + TVRVS+LEIYNE L DLLS +T + + E+ +G V
Sbjct: 138 LQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENP--QG-VF 194
Query: 146 IQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEEL 205
I+GL +++ + +L +G R A+ MN +SSRSH IFTI + + EE
Sbjct: 195 IKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT-LSEEK 253
Query: 206 LRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-KTPHIPYRES 264
T K+NLVDLAGSE +G+SG++ + +EA IN+SL L + I AL + K HIP+R+
Sbjct: 254 YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQC 313
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
KLT L+DSLGG ++ + +EETLS+L +A R K +
Sbjct: 314 KLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358
Score = 178 bits (454), Expect = 4e-51
Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 359 PLNSVER----AAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYV 414
P + +D ++I N + +F D V ++ Q VY+ V
Sbjct: 33 PTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVL-HDASQDLVYETV 91
Query: 415 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 474
++ + L GYN T+ YGQTG GKT+TM G + ++ GI+PRA+ +F
Sbjct: 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG--------ATENYKHRGILPRALQQVFR 143
Query: 475 ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
+ TVRVS+LEIYNE L DLLS +
Sbjct: 144 MIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGP 179
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 428 bits (1104), Expect = e-148
Identities = 117/301 (38%), Positives = 173/301 (57%), Gaps = 19/301 (6%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
+VY+ + P+ID + GYN T+FAYGQT +GKT+TM G + G++PRA
Sbjct: 60 NVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMG-----------SEDHLGVIPRA 108
Query: 90 MNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
++ +F +++ D EF +RVS++EIYNE + DLL T + L + ED +V + L
Sbjct: 109 IHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDV--NRNVYVADL 166
Query: 150 EEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIK--DNSLDGEELLR 207
E+ V+ + K + KG + R T MN SSRSHTIF + + + + E ++
Sbjct: 167 TEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--KTPHIPYRESK 265
LNLVDLAGSE ++GA R +E NIN+SL LG+ I L + I YR+SK
Sbjct: 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSK 286
Query: 266 LTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALL 325
LTR+LQ+SLGG KT II T++P + +ETL+ L +A AK + N P +N+ + +
Sbjct: 287 LTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEH 344
Query: 326 R 326
Sbjct: 345 H 345
Score = 182 bits (463), Expect = 2e-52
Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PLNS E + + V + + SK+F FDRVF +VY+ + P+
Sbjct: 14 PLNSREESLGETAQVYWKTDNNVIY----QVDGSKSFNFDRVFHGNETTKNVYEEIAAPI 69
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
ID + GYN T+FAYGQT +GKT+TM G + G++PRA++ +F +++
Sbjct: 70 IDSAIQGYNGTIFAYGQTASGKTYTMMG-----------SEDHLGVIPRAIHDIFQKIKK 118
Query: 479 LGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
D EF +RVS++EIYNE + DLL T + L
Sbjct: 119 FPDREFLLRVSYMEIYNETITDLLCGTQKMKPLI 152
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 427 bits (1099), Expect = e-146
Identities = 109/292 (37%), Positives = 156/292 (53%), Gaps = 22/292 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 137 VVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSG-----KSQNASKGIYAMA 191
Query: 90 MNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
+F + V V+F EIYN ++ DLL+ KLR+ EDS + V +
Sbjct: 192 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK---AKLRVLEDS--RQQVQVV 246
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
GL+E V D+V K++ GS R + T N++SSRSH F I + K
Sbjct: 247 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR--------L 298
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
GK +LVDLAG+E + + D++ R E IN+SLL L CI AL + H P+RESKL
Sbjct: 299 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 358
Query: 267 TRLLQDS-LGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQ 317
T++L+DS +G ++T +IA +SP + E TL+TL YA R K +++ +
Sbjct: 359 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHHHHH 410
Score = 180 bits (460), Expect = 2e-51
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVYK 412
PLN E A K ++ S + + E ++ F FD F + + VY+
Sbjct: 81 PLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYR 140
Query: 413 YVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 472
+ PL+ + G T FAYGQTG+GKT TM G+ S + GI A +
Sbjct: 141 FTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSG-----KSQNASKGIYAMASRDV 195
Query: 473 FDELRLL--GDAEFTVRVSFLEIYNEELIDLLSP 504
F + V V+F EIYN ++ DLL+
Sbjct: 196 FLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 229
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 422 bits (1087), Expect = e-145
Identities = 111/288 (38%), Positives = 156/288 (54%), Gaps = 22/288 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 117 VVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSG-----KAQNASKGIYAMA 171
Query: 90 MNHLFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
+F V V+F EIYN +L DLL+ KLR+ ED K V +
Sbjct: 172 SRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK---AKLRVLEDG--KQQVQVV 226
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
GL+E V++ D+V K+++ GS R + T N++SSRSH F I + K
Sbjct: 227 GLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR--------M 278
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
GK +LVDLAG+E + + D++ R E IN+SLL L CI AL + H P+RESKL
Sbjct: 279 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 338
Query: 267 TRLLQDS-LGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRP 313
T++L+DS +G ++T +IAT+SP + E TL+TL YA R K ++
Sbjct: 339 TQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
Score = 181 bits (461), Expect = 1e-51
Identities = 47/154 (30%), Positives = 66/154 (42%), Gaps = 13/154 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVYK 412
PLN E A K ++ S + + E ++ F FD F + + VY+
Sbjct: 61 PLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYR 120
Query: 413 YVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 472
+ PL+ + G T FAYGQTG+GKT TM G+ S + GI A +
Sbjct: 121 FTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSG-----KAQNASKGIYAMASRDV 175
Query: 473 FDELRLLG--DAEFTVRVSFLEIYNEELIDLLSP 504
F V V+F EIYN +L DLL+
Sbjct: 176 FLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNK 209
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 412 bits (1062), Expect = e-141
Identities = 115/299 (38%), Positives = 173/299 (57%), Gaps = 19/299 (6%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DV++ L+ + GYN +FAYGQTG+GKTFT+ G SN G+ PRA
Sbjct: 63 DVFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP-----------GLTPRA 110
Query: 90 MNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDI-TKLRLFEDSARKGSVIIQ 147
M+ LF ++ F+++ +E+Y + L+DLL P KL + +DS KG V ++
Sbjct: 111 MSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS--KGMVSVE 168
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
+ ++ +E+ I+++GS++R T TLMN SSRSH I ++ I + + +
Sbjct: 169 NVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTN---LQTQAIA 225
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLT 267
GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG I+AL HIPYR KLT
Sbjct: 226 RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLT 285
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
L+ DSLGG KT + +SPA+ N++ET ++L YA R ++I N P N + A L+
Sbjct: 286 MLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLK 344
Score = 173 bits (441), Expect = 4e-49
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 16/156 (10%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PL E AK + + E T++ D +K +DRVF + Q DV++ L
Sbjct: 15 PLCEKEIIAKERNAIRSVD--EFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE-DTKYL 71
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+ + GYN +FAYGQTG+GKTFT+ G SN G+ PRAM+ LF ++
Sbjct: 72 VQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP-----------GLTPRAMSELFRIMKK 120
Query: 479 L-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRH 513
F+++ +E+Y + L+DLL P +L+
Sbjct: 121 DSNKFSFSLKAYMVELYQDTLVDLLLP-KQAKRLKL 155
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 411 bits (1058), Expect = e-141
Identities = 121/281 (43%), Positives = 163/281 (58%), Gaps = 17/281 (6%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DV++ V L+ + G+N +FAYGQTG GKT+TMEG N GI RA
Sbjct: 64 DVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP-----------GINQRA 111
Query: 90 MNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ LF E++ D E+T+ VS EIYNE L DLL + KL + G + + G
Sbjct: 112 LQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGK-EPQEKLEIRLCPDGSGQLYVPG 170
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L E V + D++ K+ E G R T T +N HSSRSH + +T+ + G T
Sbjct: 171 LTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGV-DCSTGLR--TT 227
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLTR 268
GKLNLVDLAGSE +G+SGA+ R REA +IN+SL LG I AL + H+P+R SKLT
Sbjct: 228 GKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTY 287
Query: 269 LLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
LLQDSL G +KT ++ VSP + N ETL +L +A R +++
Sbjct: 288 LLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
Score = 178 bits (454), Expect = 2e-51
Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
P+ + + + + +I ++ +F D+VFS ++ Q DV++ V L
Sbjct: 14 PVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QAL 72
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+ + G+N +FAYGQTG GKT+TMEG N GI RA+ LF E++
Sbjct: 73 VTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP-----------GINQRALQLLFSEVQE 121
Query: 479 L-GDAEFTVRVSFLEIYNEELIDLLSPTDDI-TKLRHTSE 516
D E+T+ VS EIYNE L DLL ++R +
Sbjct: 122 KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPD 161
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 411 bits (1059), Expect = e-141
Identities = 117/289 (40%), Positives = 172/289 (59%), Gaps = 20/289 (6%)
Query: 25 YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSG 84
+T +V+++ P++ L+GYNCTV AYG TG GKT TM G D+P G
Sbjct: 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS---------ADEP--G 131
Query: 85 IVPRAMNHLFDEL-RLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGS 143
++ M HL+ + + + + VS+LE+YNE++ DLL + L + ED+ +
Sbjct: 132 VMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNS---GPLAVREDT--QKG 186
Query: 144 VIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGE 203
V++ GL + +E+ +L+ G++ R T MNA SSRSH +F I + +D +
Sbjct: 187 VVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASIN 246
Query: 204 ELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTPHIP 260
+ +R K++L+DLAGSE SGA+ R E NIN+SLL LG I AL + K HIP
Sbjct: 247 QNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIP 306
Query: 261 YRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
YR SKLTRLL+DSLGG +T +IA VSP+ + ++T +TL YA+RAK+I
Sbjct: 307 YRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
Score = 166 bits (423), Expect = 1e-46
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 31/173 (17%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITI------------------KERVNDKISKTFGFDRV 400
P N+ E+AA +V + F FD V
Sbjct: 20 PENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAV 79
Query: 401 FSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDP 460
F + S Q +V+++ P++ L+GYNCTV AYG TG GKT TM G D+P
Sbjct: 80 FDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS---------ADEP 130
Query: 461 LSGIVPRAMNHLFDEL-RLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
G++ M HL+ + + + + VS+LE+YNE++ DLL + + +R
Sbjct: 131 --GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPL-AVR 180
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 405 bits (1044), Expect = e-138
Identities = 105/287 (36%), Positives = 148/287 (51%), Gaps = 20/287 (6%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
+V++ + L+ L GY +FAYGQTG+GKTFTMEG DP L G++PRA
Sbjct: 99 EVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ-------LEGLIPRA 150
Query: 90 MNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSP---TDDITKLRLFEDSARKGSV 144
+ HLF + L ++ S++EIYNE + DLL+ + + +
Sbjct: 151 LRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEEL 210
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
+ V + EV +L Q R A T N SSRSH++F + I + +S G +
Sbjct: 211 TVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGE-HSSRGLQ 269
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQ----DKRAREAGNINQSLLTLGRCITALVEKTPHIP 260
L+LVDLAGSE + A +R RE IN SL TLG I AL K H+P
Sbjct: 270 --CGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVP 327
Query: 261 YRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
YR SKLT LLQ+SLGG K + +SP + N+ E+L++L +A +
Sbjct: 328 YRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVN 374
Score = 172 bits (437), Expect = 2e-48
Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 359 PLNSVERAAKSCSIVDC-----------------SSSREITIKERVNDKISKTFGFDRVF 401
P+ E ++ S R T+ F FDRVF
Sbjct: 32 PVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVF 91
Query: 402 SQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPL 461
S Q +V++ + L+ L GY +FAYGQTG+GKTFTMEG DP L
Sbjct: 92 PPGSGQDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQ-------L 143
Query: 462 SGIVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDD 507
G++PRA+ HLF + L ++ S++EIYNE + DLL+
Sbjct: 144 EGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTR 191
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 401 bits (1033), Expect = e-136
Identities = 106/311 (34%), Positives = 167/311 (53%), Gaps = 24/311 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
D+++ +V+PLI L GYN +FAYGQTG+GKT+TM+G + G++PR
Sbjct: 122 DIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV-----------GVIPRT 169
Query: 90 MNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
++ LFD +R + E+ ++ +FLEIYNE L DLLS ++R+ +++ K + +
Sbjct: 170 VDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN--KNDIYVS 227
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
+ E+ V + + + ++ R TA+T N SSRSH + + + + ++ +
Sbjct: 228 NITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRH---AEKQEIS 284
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKLT 267
G +NLVDLAGSE S R E NIN+SL L I AL++K HIPYR SKLT
Sbjct: 285 VGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLT 340
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI-TNRPEINQKMSKKALLR 326
LL SLGG +KT + VSP Q +E++ +L +A + + + N+ ++
Sbjct: 341 HLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANS 400
Query: 327 VTSINMEETLS 337
T N +
Sbjct: 401 STQSNNSGSFD 411
Score = 174 bits (443), Expect = 5e-49
Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 17/160 (10%)
Query: 359 PLNSVERAAKSCSIVDC-SSSREITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYVV 415
P E C+ S+ E+ + + + F FD+VF S Q D+++ +V
Sbjct: 69 PPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFE-MV 127
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
+PLI L GYN +FAYGQTG+GKT+TM+G + G++PR ++ LFD
Sbjct: 128 SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV-----------GVIPRTVDLLFDS 176
Query: 476 LRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRH 513
+R + E+ ++ +FLEIYNE L DLLS ++R
Sbjct: 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRM 216
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 393 bits (1013), Expect = e-134
Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 27/308 (8%)
Query: 25 YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSG 84
Y + VY+ + ++ GYN +FAYGQTG GK++TM G+ Q+ G
Sbjct: 67 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK---------QEKDQQG 117
Query: 85 IVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKG 142
I+P+ LF + + ++V VS++EIY E + DLL+P + LR+ E
Sbjct: 118 IIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-GNLRVREHP--LL 174
Query: 143 SVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITI-HIKDNSLD 201
++ L + AV + +++ +++ G++ R AAT MN SSRSH +F I + ++
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 202 GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE------- 254
+ K++LVDLAGSE +GA+ R +E NIN+SL TLG+ I+AL E
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 255 -----KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
KT IPYR+S LT LL+++LGG ++T+++A +SPA +N +ETLSTL YA RAK I
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Query: 310 TNRPEINQ 317
N +N
Sbjct: 355 RNTVSVNH 362
Score = 165 bits (419), Expect = 5e-46
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESK--------QVDV 410
P NS E + S I+ S S + + + K+F FD + + Q V
Sbjct: 14 PFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQV 73
Query: 411 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470
Y+ + ++ GYN +FAYGQTG GK++TM G+ Q+ GI+P+
Sbjct: 74 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGK---------QEKDQQGIIPQLCE 124
Query: 471 HLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPT 505
LF + + ++V VS++EIY E + DLL+P
Sbjct: 125 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK 161
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 387 bits (997), Expect = e-131
Identities = 120/296 (40%), Positives = 171/296 (57%), Gaps = 22/296 (7%)
Query: 25 YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSG 84
Y V+K + ++ GYN +FAYGQTG+GK++TM G G
Sbjct: 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG-----------TADQPG 118
Query: 85 IVPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKG 142
++PR + LF+ + + F V VS++EIYNE++ DLL P L++ E S
Sbjct: 119 LIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHS--VL 176
Query: 143 SVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITI-HIKDNSLD 201
+ GL + AV + ++ ++ +G++ R AAT MN SSRSH +F IT+ H +
Sbjct: 177 GPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKS 236
Query: 202 GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE------K 255
G + GKL+LVDLAGSE ++GA R +E NIN+SL TLG I+AL + K
Sbjct: 237 GTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNK 296
Query: 256 TPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITN 311
+PYR+S LT LL+DSLGG +KT+++ATVSPA N +ETLSTL YA RAK+ +
Sbjct: 297 NKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHHHH 352
Score = 160 bits (408), Expect = 1e-44
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 27/170 (15%)
Query: 359 PLNSVERAAKSCSIVDCSSSR------EITIKERVNDKISKTFGFDRVF--------SQE 404
P+N E + +VD +++ + + K F +D F +
Sbjct: 11 PMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKY 70
Query: 405 SKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 464
+ Q V+K + ++ GYN +FAYGQTG+GK++TM G G+
Sbjct: 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMG-----------TADQPGL 119
Query: 465 VPRAMNHLFDELRLLGD--AEFTVRVSFLEIYNEELIDLLSPTDDITKLR 512
+PR + LF+ + + F V VS++EIYNE++ DLL P L+
Sbjct: 120 IPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLK 169
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 385 bits (991), Expect = e-129
Identities = 116/332 (34%), Positives = 165/332 (49%), Gaps = 45/332 (13%)
Query: 25 YTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSG 84
Y T VY + +D GY+ +FAYGQTG+GK++TM G G
Sbjct: 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQ-----------PG 162
Query: 85 IVPRAMNHLFDELRLL----GDAEFTVRVSFLEIYNEELIDLLSPTDDITK---LRLFED 137
++PR LF + + + V+VS+ E+YNE + DLL+P L++ E
Sbjct: 163 LIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRES 222
Query: 138 SARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKD 197
++ L E V +E+ + + G R A+T MN SSRSH +FTI +
Sbjct: 223 P--TEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIH 280
Query: 198 NSLD-GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-- 254
+ L+ + R+ ++ LVDLAGSE + A +R RE NIN+SL TLGR I AL +
Sbjct: 281 HDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPK 340
Query: 255 --------------------KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNME 294
+PYR+S LT LL+DSLGG +KT++IA +SP + +
Sbjct: 341 SSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYD 398
Query: 295 ETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
ETLSTL YA +AK I R +NQ A R
Sbjct: 399 ETLSTLRYADQAKRIRTRAVVNQVDGVSAAER 430
Score = 155 bits (393), Expect = 9e-42
Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 36/174 (20%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITI--------------KERVNDKISKTFGFDRVF--- 401
E + IV+ + E T K+F FD+ F
Sbjct: 48 AFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSH 107
Query: 402 ----SQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQ 457
+ Q VY + +D GY+ +FAYGQTG+GK++TM G
Sbjct: 108 NTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQ------- 160
Query: 458 DDPLSGIVPRAMNHLFDELRLL----GDAEFTVRVSFLEIYNEELIDLLSPTDD 507
G++PR LF + + + V+VS+ E+YNE + DLL+P
Sbjct: 161 ----PGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVP 210
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 376 bits (969), Expect = e-127
Identities = 111/296 (37%), Positives = 155/296 (52%), Gaps = 30/296 (10%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DV+K V L+ L GYN +FAYGQTG+GKTFTM P GI+P
Sbjct: 68 DVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN-------------PGDGIIPST 113
Query: 90 MNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDD-------ITKLRLFEDSAR 140
++H+F+ + L ++ V F+EIYNE ++DLL ++ K + D
Sbjct: 114 ISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQET 173
Query: 141 KGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSL 200
K I + + +++ V IL+K ++ R TA+T N HSS SH+IF I + N+
Sbjct: 174 KT-TTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS-NAK 231
Query: 201 DGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTP 257
G G LNLVDLAGSE I S R RE NIN+SL LG I AL +
Sbjct: 232 TGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKR 289
Query: 258 HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRP 313
HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A + +
Sbjct: 290 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345
Score = 164 bits (417), Expect = 7e-46
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 359 PLNSVERAAKSCSIV-----DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKY 413
P + + I D S + + + + N F FD++F Q+ VDV+K
Sbjct: 13 PALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE 72
Query: 414 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLF 473
V L+ L GYN +FAYGQTG+GKTFTM P GI+P ++H+F
Sbjct: 73 V-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLN-------------PGDGIIPSTISHIF 118
Query: 474 DELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDD 507
+ + L ++ V F+EIYNE ++DLL ++
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNN 154
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 375 bits (966), Expect = e-126
Identities = 112/296 (37%), Positives = 156/296 (52%), Gaps = 30/296 (10%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
DV+K V L+ L GYN +FAYGQTG+GKTFTM P GI+P
Sbjct: 124 DVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLN-------------PGDGIIPST 169
Query: 90 MNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDD-------ITKLRLFEDSAR 140
++H+F+ + L ++ V F+EIYNE ++DLL ++ K + D
Sbjct: 170 ISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQET 229
Query: 141 KGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSL 200
K I + + +++ V IL+K ++ R TA+T N HSSRSH+IF I + N+
Sbjct: 230 KT-TTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS-NAK 287
Query: 201 DGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE---KTP 257
G G LNLVDLAGSE I S R RE NIN+SL LG I AL +
Sbjct: 288 TGAH--SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKR 345
Query: 258 HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRP 313
HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A + +
Sbjct: 346 HIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401
Score = 163 bits (416), Expect = 3e-45
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 21/156 (13%)
Query: 359 PLNSVERAAKSCSIV-----DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKY 413
P + + I D S + + + + N F FD++F Q+ VDV+K
Sbjct: 69 PALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE 128
Query: 414 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLF 473
V L+ L GYN +FAYGQTG+GKTFTM P GI+P ++H+F
Sbjct: 129 V-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLN-------------PGDGIIPSTISHIF 174
Query: 474 DELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDD 507
+ + L ++ V F+EIYNE ++DLL ++
Sbjct: 175 NWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNN 210
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 356 bits (917), Expect = e-119
Identities = 104/298 (34%), Positives = 153/298 (51%), Gaps = 32/298 (10%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
++++ + L+ L GYN +FAYGQTG+GKT+TM G++P
Sbjct: 69 EIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLN-------------AGDGMIPMT 114
Query: 90 MNHLFDELRLLGDA--EFTVRVSFLEIYNEELIDLLSP---------TDDITKLRLFEDS 138
++H+F L + + + ++EIYNE ++DLL D K + D
Sbjct: 115 LSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDH 174
Query: 139 ARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDN 198
++G I + + + +V IL+K S+ R TAAT N SSRSH++F + I+ + N
Sbjct: 175 EKQG-TYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGR-N 232
Query: 199 SLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEK--- 255
GE GKLNLVDLAGSE I S +R RE NIN+SL LG I AL
Sbjct: 233 LHTGET--SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAG 290
Query: 256 TPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRP 313
+IP+R SKLT LLQ SL G +KT + + P ++ ETL++L +A + +
Sbjct: 291 KRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348
Score = 163 bits (414), Expect = 2e-45
Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 26/186 (13%)
Query: 359 PLNSVERAAKSCSIV----DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYV 414
P E S ++ + ++ +TI +S F FD +F ++++ +
Sbjct: 15 PPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI 74
Query: 415 VNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFD 474
L+ L GYN +FAYGQTG+GKT+TM G++P ++H+F
Sbjct: 75 -RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLN-------------AGDGMIPMTLSHIFK 120
Query: 475 ELRLLGDA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRRDLQAAR 532
L + + + ++EIYNE ++DLL E ++ + D++
Sbjct: 121 WTANLKERGWNYEMECEYIEIYNETILDLLRDFKS------HDNIDEILDSQKHDIRHDH 174
Query: 533 EKNGVF 538
EK G +
Sbjct: 175 EKQGTY 180
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 163 bits (415), Expect = 1e-48
Identities = 42/93 (45%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 235 AGNINQSLLTLGRCITALVE-KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNM 293
A NIN+SL LG I+AL E H+PYR+SK+TR+LQDSL G +T+I+ SP+ N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 294 EETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
ET STL + RAK I N +N +++ + +
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNLELTAEEWKK 93
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 156 bits (397), Expect = 5e-46
Identities = 40/89 (44%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 239 NQSLLTLGRCITALVE-KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETL 297
N+SL LG I+AL E H+PYR+SK+TR+LQDSLGG +T+I+ SP+ N ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 298 STLDYAHRAKNITNRPEINQKMSKKALLR 326
STL + RAK I N +N +++ + +
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKK 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 1e-12
Identities = 98/610 (16%), Positives = 177/610 (29%), Gaps = 190/610 (31%)
Query: 91 NHLFDELR-LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGL 149
+ D + +L E I LRLF K ++Q
Sbjct: 36 KDVQDMPKSILSKEEID------HIIMS-------KDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 150 EEKAVHNKDEVYK-ILEK-GSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEEL-- 205
E+ V + YK ++ +++RQ + R + K N +
Sbjct: 83 VEE-VLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 206 LRTGKLNL-----VDLAGSENIGRS-----GAQDKRAREAGNINQSLLTLGRC------- 248
LR L L V + G G++ + + + L L C
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 249 -------------ITALVEKTPHIPYR----ESKLTRLLQDSLGGRTKTS--IIATVSPA 289
T+ + + +I R +++L RLL+ + ++ V A
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNA 256
Query: 290 Q----LNME-ETLSTLDYAHRAKNITN------RPEINQKMSKKALLRVTSINMEETLST 338
+ N+ + L T R K +T+ I+ L +E S
Sbjct: 257 KAWNAFNLSCKILLTT----RFKQVTDFLSAATTTHISLDHHSMTLTP------DEVKSL 306
Query: 339 LDYAHRAKNITNRPEINQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFD 398
L K + RP Q +P R + + S I E + D G
Sbjct: 307 L-----LKYLDCRP---QDLP-----REVLTTNPRRLS-----IIAESIRD------GLA 342
Query: 399 RVFSQESKQVDVYKYVVNPLID---EVLSGY-------NCTVFAYGQTGTGKTFTM---E 445
K V+ K + +I+ VL +VF ++ +
Sbjct: 343 T--WDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 446 GEKSNDPSI-----------SWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIY 494
KS+ + + I ++ EL++ + E+ + S ++ Y
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDHY 453
Query: 495 NE----ELIDLLSPTDD------ITKLRH--TSEYTEEIE--------------KLRRDL 528
N + DL+ P D I H E+ E + K+R D
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 529 QAAREKNGV---FLAAENY-----------DQMVNELYAEVTSVEKKSSSPSAAEDQPPT 574
A + + Y +++VN + P E+ +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---------LDFLPKIEENLICS 562
Query: 575 KHL-ILRARL 583
K+ +LR L
Sbjct: 563 KYTDLLRIAL 572
Score = 61.0 bits (147), Expect = 8e-10
Identities = 86/591 (14%), Positives = 159/591 (26%), Gaps = 191/591 (32%)
Query: 26 TTIVDVYKYVVNPLID--EVLSGYNCT--------------------VFAYGQTGTGKTF 63
+ + +Y + L + +V + YN + V G G+GKT
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT- 164
Query: 64 TMEGEKSNDPS--------ISW-----QDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVS 110
+ + I W + P + V + L ++ D +T R
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET--VLEMLQKLLYQI----DPNWTSRSD 218
Query: 111 F---LEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVHNKDEVY--KILE 165
+++ + L RL + + +++ L V K
Sbjct: 219 HSSNIKLRIHSIQAELR--------RLLKSKPYENCLLV--L--------LNVQNAKAWN 260
Query: 166 K---GSQKRQTAATLMNAHSSRSHTIFTI--TIHIKDNSLDGEELLRTGKLNLVDLAGSE 220
+ L+ ++R + SLD + T L
Sbjct: 261 AFNLSCK------ILL---TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 221 NIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIP-----YRESKLTRLLQDSLG 275
+ QD RE N L++ I + KLT +++ SL
Sbjct: 312 DC---RPQDLP-REVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSL- 363
Query: 276 GRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLRVTSIN-MEE 334
L +Y ++ P S +
Sbjct: 364 -------------------NVLEPAEYRKMFDRLSVFPP--------------SAHIPTI 390
Query: 335 TLSTLDYAHRAKNITNRPE-INQKMPLNS-VERAAK--SCSIVDCSSSREITIKERVNDK 390
LS + I + + K+ S VE+ K + SI + +K ++ ++
Sbjct: 391 LLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY----LELKVKLENE 442
Query: 391 ISKTFGFDRVFSQESKQVDVY----KYVVNPLIDEVLSGYNCTVFAY-----GQTGTGKT 441
+ VD Y + + LI L Y + +
Sbjct: 443 YAL----------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 442 FTME-------GEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL------LGDAEFTVRV 488
F M +K S +W ++ + +L+ D ++ V
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWN-------ASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 489 S----FLEIYNEELIDLLSPTDDITKL---RHTSEYTEEIEKLRRDLQAAR 532
+ FL E LI S D+ ++ EE K Q R
Sbjct: 546 NAILDFLPKIEENLI--CSKYTDLLRIALMAEDEAIFEEAHK-----QVQR 589
Score = 53.7 bits (128), Expect = 1e-07
Identities = 44/344 (12%), Positives = 97/344 (28%), Gaps = 90/344 (26%)
Query: 314 EINQ-KMSKKALLRVTSINMEETLSTLDYAHRAKNITNRPEINQ--KMPLNSVERAAKSC 370
E + + K +L V + D K+I ++ EI+ ++V +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLR-- 66
Query: 371 SIVDC-SSSREITIKERVNDKISKTFGF--DRVFSQESKQ----VDVYKYVVNPLID--E 421
+ S +E +++ V + + + F E +Q +Y + L + +
Sbjct: 67 -LFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 422 VLSGYNCT--------------------VFAYGQTGTGKTFTMEGEKSNDPS-------- 453
V + YN + V G G+GKT + +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFK 183
Query: 454 ISW-----QDDPLSGIVP-RAMNHLFD-ELRLLGDAEFTVRVSFLEI------------Y 494
I W + P + + + + + D D +++ I Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 495 NEELIDLLSPTDDITKLRH------------TSEYTEEIEKL---RRDLQAAREKNGVFL 539
L+ L ++ + T+ + + + L + +
Sbjct: 244 ENCLLVL----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 540 AAENYDQMVNELYAEVTSVEKKSSSPSAAEDQPPTKHLILRARL 583
E V L + + P P + I+ +
Sbjct: 300 PDE-----VKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESI 337
Score = 37.1 bits (85), Expect = 0.019
Identities = 38/210 (18%), Positives = 63/210 (30%), Gaps = 61/210 (29%)
Query: 331 NMEETLSTLDYAHRAKNITNRPEINQKMPLNSVERAAKSCSIVDCSSSREITIKERVNDK 390
+M+ Y ++ V+ KS I+ S EI D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--IL---SKEEIDHIIMSKDA 60
Query: 391 ISKTFGFDRVF-SQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKS 449
+S T R+F + SKQ ++ + V +EVL N Y F M
Sbjct: 61 VSGT---LRLFWTLLSKQEEMVQKFV----EEVLR-IN-----YK-------FLMS---- 96
Query: 450 NDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT 509
+ + P M ++ E R D + F +++
Sbjct: 97 -----PIKTEQRQ---PSMMTRMYIEQR---DRLYNDNQVF-------------AKYNVS 132
Query: 510 KLRHTSEYTEEIEKLRRDLQAAREKNGVFL 539
+L + KLR+ L R V +
Sbjct: 133 RL-------QPYLKLRQALLELRPAKNVLI 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.8 bits (134), Expect = 3e-08
Identities = 83/468 (17%), Positives = 148/468 (31%), Gaps = 128/468 (27%)
Query: 178 MNAHSSR----SHTIFTITIHIKDNSLDGEELLR---TGKLNLVDLAGSENIGRSGAQDK 230
M+A+S+R SH + + S L+ L +E A D
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP----EPTEGF----AAD- 51
Query: 231 RAREAGNINQSLLT--LGRCITALVEKTPHIPYRESKLTRLL----QDSLGGRTKTSIIA 284
+ L+ LG +++LVE + + + L L L G ++ A
Sbjct: 52 ---DEPTTPAELVGKFLGY-VSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIHALAA 106
Query: 285 TV-SPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLR--------VTSI----- 330
+ + +T + A+ + RP K S AL R + +I
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPF--DKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 331 NMEET---LSTLDYAHRAKNITNRPEINQKMPLNSVERAAKSCSIVDCSSSREITIKERV 387
N ++ L L Y T + L ++ +A++ S + +
Sbjct: 165 NTDDYFEELRDL-YQ------TYHVLVG---DL--IKFSAETLS--ELIRTTL------- 203
Query: 388 NDKISKTF--GFD--RVFSQESKQVDVYKYVVN-----PLIDEV-LSGY--NCTVFAY-- 433
K F G + S D Y+++ PLI + L+ Y + +
Sbjct: 204 --DAEKVFTQGLNILEWLENPSNTPDKD-YLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 434 --------GQTGTGK-----TFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRLLG 480
G TG + E + SW+ V +A+ LF +G
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAE-------TDSWES--FFVSVRKAITVLF----FIG 307
Query: 481 ----DA--EFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRRDLQAAREK 534
+A ++ S LE E + SP I+ L + + + K L A ++
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ-EQVQDYVNKTNSHLPAGKQ- 365
Query: 535 NGVFLAAEN-YDQMV-----NELYAEVTSVEKKSSSPSAAEDQPPTKH 576
V ++ N +V LY ++ K + DQ
Sbjct: 366 --VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS--GLDQSRIPF 409
Score = 46.2 bits (109), Expect = 3e-05
Identities = 70/410 (17%), Positives = 114/410 (27%), Gaps = 149/410 (36%)
Query: 24 FYTTIVDVYKYVVNPLID---EVLSGYNCTVFAYGQTGTGKTFTMEG--------EKSND 72
Y T Y +V LI E LS K FT +G SN
Sbjct: 176 LYQT----YHVLVGDLIKFSAETLSE-----LIRTTLDAEKVFT-QGLNILEWLENPSNT 225
Query: 73 PS--------ISWQDDPLSGIVPRAMNHLFDELRLLG--DAEF-------TVRV------ 109
P IS PL G++ + H +LLG E T
Sbjct: 226 PDKDYLLSIPISC---PLIGVI--QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 110 ----------SFLEIYNEELIDLL----------SPTDDITKLRLFEDSARKG------- 142
SF + I +L P + + EDS
Sbjct: 281 VAIAETDSWESFFVSV-RKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPM 338
Query: 143 -SVIIQGLEEKAVHNKDEVYKILEK----GSQKRQTAATLMNAHSSRSHTIFTITIHIKD 197
S+ L +++V + K +Q +L+N + ++ +
Sbjct: 339 LSI--SNL------TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN-----LVVSGPPQ- 384
Query: 198 NSLDGEEL-LRTGKLNLVDLAGSENIGRSGAQDK---RAREAGNINQSLLTLGRCITALV 253
SL G L LR K A S Q + R+ + L + +
Sbjct: 385 -SLYGLNLTLRKAK------APSGLD-----QSRIPFSERKL-KFSNRFLP----VAS-- 425
Query: 254 EKTP-HIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNM--EETLSTLDYAHRAKNIT 310
P H + +D L + + + + +T D + +I+
Sbjct: 426 ---PFHSHLLVPASDLINKD-LVKNN-----VSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 311 NRPEINQKMSKKALLRVTSINMEETLST-----LDY----AHRAKNITNR 351
I ++R+ + E T LD+ A +T+R
Sbjct: 477 --ERIVD-----CIIRLP-VKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Score = 39.3 bits (91), Expect = 0.005
Identities = 71/384 (18%), Positives = 119/384 (30%), Gaps = 124/384 (32%)
Query: 94 FDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKA 153
F+ELR L + ++ E L +L+ T D K +F +G I++ LE +
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--VFT----QGLNILEWLENPS 223
Query: 154 -VHNKDEVYKILEKGSQKRQTAA------TLMN-AHSSRSHTIFTITIHIKDNSLDGEEL 205
+KD Y + + ++ AH + +T +
Sbjct: 224 NTPDKD--YLL---------SIPISCPLIGVIQLAH-------YVVTAKLLG-------- 257
Query: 206 LRTGKLNLVDLAGSENIGR--------SGAQD-----KRAREAGNINQSLLTLG-RCITA 251
G+L L G+ + + R+A + L +G RC
Sbjct: 258 FTPGELRSY-LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV---LFFIGVRC--- 310
Query: 252 LVEKTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLST--LDYAHRAKNI 309
E P+ S +L+DSL SP M LS L +
Sbjct: 311 -YEAYPNTSLPPS----ILEDSLENNEGVP-----SP----M---LSISNLTQEQVQDYV 353
Query: 310 TNRPEINQKMSKKALLRVTSINMEETLSTLDYAHRAKNITNRPEINQKMPLNSVERAAKS 369
+ N + + ++ +N + ++ P+ LN R AK+
Sbjct: 354 N---KTNSHLPAGKQVEISLVN----------GAKNLVVSGPPQ--SLYGLNLTLRKAKA 398
Query: 370 CSIVDCSSSREITIKERVNDKISKTFGFDRVF----SQESKQVDVYKYVVNPLIDEVLSG 425
S +D SR I ER K+ + F V S + LI++ L
Sbjct: 399 PSGLD--QSR-IPFSER---KLKFSNRFLPVASPFHSH-------LLVPASDLINKDLVK 445
Query: 426 YN---------CTVFAYGQTGTGK 440
N V+ T G
Sbjct: 446 NNVSFNAKDIQIPVYD---TFDGS 466
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 33.6 bits (77), Expect = 0.18
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 1 MALHQVTGLNTMMVVSVMFLVCIFYTTI 28
+AL + G+ M + + L + Y+
Sbjct: 152 LALETILGIPLMYSILGLALFALVYSIY 179
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.26
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 508 ITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSA 567
I K R E + +++ D + + A+ + N+ +E VEK +
Sbjct: 87 IRKWR--EEQRKRLQE--LDAASKVMEQEWREKAKKDLEEWNQRQSE--QVEKNKINNRI 140
Query: 568 AEDQ 571
A+
Sbjct: 141 ADKA 144
Score = 29.4 bits (65), Expect = 2.6
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 131 KLRLFE-DSARKGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQ 172
+ RL E D+A K Q EKA + +E + + +K +
Sbjct: 95 RKRLQELDAASKVM--EQEWREKAKKDLEEWNQRQSEQVEKNK 135
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 32.8 bits (75), Expect = 0.30
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 1 MALHQVTGLNTMMVVSVMFLVCIFYTTI 28
+AL + G+ M + + L + Y+
Sbjct: 123 LALETILGIPLMYSILGLALFALVYSIY 150
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 31.9 bits (73), Expect = 0.40
Identities = 30/181 (16%), Positives = 65/181 (35%), Gaps = 29/181 (16%)
Query: 41 DEVLSG---YNCTVFAYGQTGTGKT-----FTMEGEKSNDPS--ISWQDDPLSGIVPRAM 90
D+++ G + G+ GTGKT F +G + DP ++ ++ I+ +A
Sbjct: 13 DKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT-EESRDSIIRQAK 71
Query: 91 NHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGS---VI-- 145
+D + + E ++ + L+P + + K+ + G VI
Sbjct: 72 QFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDS 131
Query: 146 IQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEEL 205
+ L L+K + R+ + L + + TI+ + + S
Sbjct: 132 VSAL-------------FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFG 178
Query: 206 L 206
+
Sbjct: 179 V 179
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 31.3 bits (71), Expect = 0.68
Identities = 17/157 (10%), Positives = 57/157 (36%), Gaps = 16/157 (10%)
Query: 300 LDYAHRAKNITNRPEINQKMSKKALLRVTSINMEETLSTL-DYAHRAKNITNRPEINQKM 358
++ + I PE+ +S+ L + + +LS + + +
Sbjct: 17 VNSDQLIQTILADPEVASFISQHHL---SQEQINLSLSKFNQFLVERQKYQLKDPSYIAK 73
Query: 359 ---PLNSVERAAKSCSIVDCSSSREITIKERVNDKIS--------KTFGFDRVFSQESKQ 407
P+ ++ S ++ E + ++++I + + + +
Sbjct: 74 GYQPILAMNEGYADVSYLETKELVEAQKQAAISERIQLVSLPKSYRHIHLSDIDVNNASR 133
Query: 408 VDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 444
++ + +++ +++ S ++ YG G GK++ +
Sbjct: 134 MEAFSAILD-FVEQYPSAEQKGLYLYGDMGIGKSYLL 169
>2y0m_B MALE-specific lethal 1 homolog; transcription, chromatin, X
chromosome, MSL complex; HET: ALY ACO; 2.70A {Mus
musculus}
Length = 74
Score = 28.2 bits (62), Expect = 1.3
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 492 EIYNEELIDLLSPTDDITKLRHTSEYTEEIEKLRRDLQAAREK 534
+ ++++ L D + RH +E + R D+Q RE+
Sbjct: 24 DPNPSDILENLD--DSVFSKRHAKLELDEKRRKRWDIQRIREQ 64
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.6
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 28/50 (56%)
Query: 519 EEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAEVTSVEKKSSSPSAA 568
+ ++KL+ L+ LYA+ S+P+ A
Sbjct: 20 QALKKLQASLK---------------------LYAD-------DSAPALA 41
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary
complex, hydrolase/DNA complex; HET: ADP; 2.10A
{Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B
1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 30.2 bits (69), Expect = 2.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 55 GQTGTGKTFTM 65
G TGTGKTFT+
Sbjct: 39 GATGTGKTFTV 49
Score = 30.2 bits (69), Expect = 2.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 434 GQTGTGKTFTM 444
G TGTGKTFT+
Sbjct: 39 GATGTGKTFTV 49
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 30.2 bits (69), Expect = 2.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 55 GQTGTGKTFTM 65
G TGTGKT TM
Sbjct: 35 GATGTGKTVTM 45
Score = 30.2 bits (69), Expect = 2.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 434 GQTGTGKTFTM 444
G TGTGKT TM
Sbjct: 35 GATGTGKTVTM 45
>1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase,
metalloprotease; HET: KCX; 1.65A {Escherichia coli}
SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A*
1pok_B* 2aqo_A* 1ybq_A* 2aqv_A*
Length = 390
Score = 29.7 bits (67), Expect = 3.0
Identities = 23/161 (14%), Positives = 44/161 (27%), Gaps = 27/161 (16%)
Query: 119 LIDLLSPTDDITKLRLFEDSARKGSVIIQGLEEKAVH--NKDEVYKILEKGSQKRQTAAT 176
+ D S D+ L +R G ++ H + + + + + +
Sbjct: 165 ISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIYDLLENCDVPIS 224
Query: 177 -LMNAHSSRSHTIFT-------------ITIHIKDNSLDGEELLR-------TGKLNLVD 215
L+ H +R+ +F IT I + E + R ++ L
Sbjct: 225 KLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIPLARVTLSS 284
Query: 216 LAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKT 256
G D TL + LV+
Sbjct: 285 DGN----GSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDY 321
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 29.8 bits (66), Expect = 3.0
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 406 KQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTM 444
+Q+ ++ + Y G+ GTGKT T+
Sbjct: 24 QQLQQLDILLGNWLRNPGHHYPR-ATLLGRPGTGKTVTL 61
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A
{Enterobacteria phage T7} SCOP: a.159.3.1 PDB: 2y7c_D
Length = 117
Score = 28.2 bits (62), Expect = 3.1
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 456 WQDDPLSGIVPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTS 515
+ D S + ++ F++ L+ D + +R+ IY + IDL +D+ +
Sbjct: 49 YYADIFSVMASEGIDLEFEDSGLMPDTKDVIRILQARIYEQLTIDLWEDAEDL-----LN 103
Query: 516 EYTEEIEKLRRD 527
EY EE+E+ D
Sbjct: 104 EYLEEVEEYEED 115
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 28.1 bits (63), Expect = 5.6
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 1/50 (2%)
Query: 393 KTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTF 442
D + Q + + + G G GKT
Sbjct: 5 WNANLDTYHPKNVSQNRALLTIRV-FVHNFNPEEGKGLTFVGSPGVGKTH 53
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 28.1 bits (63), Expect = 6.8
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 383 IKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTF 442
I+ + V + ++ ++ + + ++ +G G GKT+
Sbjct: 10 IQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.364
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,748,996
Number of extensions: 546652
Number of successful extensions: 1646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1446
Number of HSP's successfully gapped: 129
Length of query: 583
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 484
Effective length of database: 3,937,614
Effective search space: 1905805176
Effective search space used: 1905805176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)