RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9448
(583 letters)
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 267 bits (684), Expect = 1e-85
Identities = 202/288 (70%), Positives = 250/288 (86%), Gaps = 2/288 (0%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T +DVY+ VV P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI
Sbjct: 59 TKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGI 118
Query: 86 VPRAMNHLFDELRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDIT-KLRLFEDSARKGSV 144
+PR ++ +F E EF+V+VS LEIYNEEL DLL+P+ D++ +L++F+D K V
Sbjct: 119 IPRTLHQIF-EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGV 177
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
II+GLEE VHNKDEVY+ILEKG+ KR TAATLMNA+SSRSH++F++TIH+K+ ++DGEE
Sbjct: 178 IIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE 237
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
L++ GKLNLVDLAGSENIGRSGA DKRAREAGNINQSLLTLGR ITALVE+TPH+PYRES
Sbjct: 238 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRES 297
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNR 312
KLTR+LQDSLGGRT+TSIIAT+SPA LN+EETLSTL+YAHRAKNI N+
Sbjct: 298 KLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345
Score = 119 bits (299), Expect = 3e-30
Identities = 79/155 (50%), Positives = 111/155 (71%), Gaps = 4/155 (2%)
Query: 359 PLNSVERAAKSCSIVDCSSSR-EITIK--ERVNDKISKTFGFDRVFSQESKQVDVYKYVV 415
P N ER A + SIV+C R E++++ + KT+ FD VF +KQ+DVY+ VV
Sbjct: 10 PFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVV 69
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
P++DEV+ GYNCT+FAYGQTGTGKTFTMEGE+S + +W++DPL+GI+PR ++ +F E
Sbjct: 70 CPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIF-E 128
Query: 476 LRLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITK 510
EF+V+VS LEIYNEEL DLL+P+ D+++
Sbjct: 129 KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSE 163
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 235 bits (599), Expect = 3e-73
Identities = 112/285 (39%), Positives = 168/285 (58%), Gaps = 16/285 (5%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T+ VY ++ +VL GYN T+FAYGQT +GKT TMEG+ + + GI
Sbjct: 54 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM--------GI 105
Query: 86 VPRAMNHLFDELRLLGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
+PR + +F+ + + + EF ++VS+ EIY +++ DLL + + +
Sbjct: 106 IPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHED----KNRVP 161
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
++G E+ V + DEV +++G R A T MN HSSRSH+IF I + ++ + +
Sbjct: 162 YVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQK- 220
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
+GKL LVDLAGSE + ++GA+ EA NIN+SL LG I+AL E + ++PYR+S
Sbjct: 221 --LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDS 278
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
K+TR+LQDSLGG +T+I+ SP+ N ET STL + RAK I
Sbjct: 279 KMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
Score = 108 bits (269), Expect = 2e-26
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PLN E I + I SK + FDRVF + Q VY +
Sbjct: 15 PLNESEVNRGDKYIAKFQGEDTVVIA-------SKPYAFDRVFQSSTSQEQVYNDCAKKI 67
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+ +VL GYN T+FAYGQT +GKT TMEG+ + + GI+PR + +F+ +
Sbjct: 68 VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGM--------GIIPRIVQDIFNYIYS 119
Query: 479 LGD-AEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSEYTEEIE 522
+ + EF ++VS+ EIY +++ DLL + + ++
Sbjct: 120 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVK 164
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 225 bits (573), Expect = 5e-69
Identities = 127/299 (42%), Positives = 188/299 (62%), Gaps = 16/299 (5%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
D++ + + P +D++L+GYN TVFAYGQTG GK++TM G +DP G++PR
Sbjct: 62 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGR-------GVIPRI 114
Query: 90 MNHLFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQG 148
+ +F + + E+TVRVS++EIY E + DLL+P +D + + V ++G
Sbjct: 115 VEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVH----EEKNRGVYVKG 170
Query: 149 LEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLRT 208
L E V + EVY+++ +G R AAT MN SSRSH+IF ITI K+ ++
Sbjct: 171 LLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSA---KS 227
Query: 209 GKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE-KTPHIPYRESKLT 267
G+L LVDLAGSE +G++GA + EA IN+SL LG I AL + K+ H+PYR+SKLT
Sbjct: 228 GQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLT 287
Query: 268 RLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKALLR 326
R+LQ+SLGG ++T++I SP+ N ETLSTL + RAK+I N+ ++N ++S L +
Sbjct: 288 RILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQ 346
Score = 103 bits (256), Expect = 2e-24
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 11/156 (7%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
P N VE + IV T+ + + +F FDRVF KQ D++ + + P
Sbjct: 15 PQNRVEIESGGQPIVTFQGPDTCTVDSK---EAQGSFTFDRVFDMSCKQSDIFDFSIKPT 71
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDELRL 478
+D++L+GYN TVFAYGQTG GK++TM G +DP G++PR + +F +
Sbjct: 72 VDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDG-------RGVIPRIVEQIFTSILS 124
Query: 479 L-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRH 513
+ E+TVRVS++EIY E + DLL+P +D +
Sbjct: 125 SAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHE 160
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 221 bits (564), Expect = 1e-67
Identities = 113/300 (37%), Positives = 170/300 (56%), Gaps = 27/300 (9%)
Query: 23 IFYTTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPL 82
I Y + VY+ + ++ GYN +FAYGQTG GK++TM G Q+
Sbjct: 62 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG---------KQEKDQ 112
Query: 83 SGIVPRAMNHLFDELRLL--GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSAR 140
GI+P+ LF + + ++V VS++EIY E + DLL+P + LR+ E
Sbjct: 113 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP-KNKGNLRVREHP-- 169
Query: 141 KGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSL 200
++ L + AV + +++ +++ G++ R AAT MN SSRSH +F I K +
Sbjct: 170 LLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDA 229
Query: 201 D-GEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE----- 254
+ + K++LVDLAGSE +GA+ R +E NIN+SL TLG+ I+AL E
Sbjct: 230 ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGP 289
Query: 255 -------KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAK 307
KT IPYR+S LT LL+++LGG ++T+++A +SPA +N +ETLSTL YA RAK
Sbjct: 290 NKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349
Score = 95.4 bits (236), Expect = 6e-22
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVD--------V 410
P NS E + S I+ S S + + + K+F FD + + D V
Sbjct: 11 PFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQV 70
Query: 411 YKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMN 470
Y+ + ++ GYN +FAYGQTG GK++TM G Q+ GI+P+
Sbjct: 71 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG---------KQEKDQQGIIPQLCE 121
Query: 471 HLFD--ELRLLGDAEFTVRVSFLEIYNEELIDLLSPTD 506
LF + ++V VS++EIY E + DLL+P +
Sbjct: 122 DLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 159
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 216 bits (550), Expect = 5e-66
Identities = 97/282 (34%), Positives = 147/282 (52%), Gaps = 20/282 (7%)
Query: 30 DVYKYVVNPLIDEVL-SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPR 88
VY+ + PLI ++ +G C+ FAYGQTG+GKT+TM G + S + GI
Sbjct: 66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP------GIFQY 119
Query: 89 AMNHLFDELRLLGDA-EFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
A +F L + + +SF EIY +L DLL + L K V+++
Sbjct: 120 AAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALE-----NGKKEVVVK 174
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
L+ V K+E+ + G R+ N SSRSH I I + D +
Sbjct: 175 DLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK------DINKNTS 228
Query: 208 TGKLNLVDLAGSENIGRSGAQDKRAR-EAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
GK+ +DLAGSE + +Q+K+ + + NIN+SLL L CI A+ HIP+R+S+L
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSEL 288
Query: 267 TRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKN 308
T++L+D G++K+ +IA +SP E+TL+TL Y+ R KN
Sbjct: 289 TKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
Score = 103 bits (258), Expect = 6e-25
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 14/163 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVYK 412
PL+ +E+ K I+ ++ + I E F D+VF VY+
Sbjct: 10 PLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYE 69
Query: 413 YVVNPLIDEVL-SGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNH 471
+ PLI ++ +G C+ FAYGQTG+GKT+TM G + S + GI A
Sbjct: 70 NTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTP------GIFQYAAGD 123
Query: 472 LFDELRLL-GDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRH 513
+F L + D + +SF EIY +L DLL + L +
Sbjct: 124 IFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALEN 166
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 214 bits (546), Expect = 5e-65
Identities = 104/285 (36%), Positives = 147/285 (51%), Gaps = 22/285 (7%)
Query: 30 DVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRA 89
VY++ PL+ + G T FAYGQTG+GKT TM G+ S + GI A
Sbjct: 96 VVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK-----SQNASKGIYAMA 150
Query: 90 MNHLFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSVIIQ 147
+F + V V+F EIYN ++ DLL+ K +L + V +
Sbjct: 151 SRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK-----KAKLRVLEDSRQQVQVV 205
Query: 148 GLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEELLR 207
GL+E V D+V K++ GS R + T N++SSRSH F I + K
Sbjct: 206 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR--------L 257
Query: 208 TGKLNLVDLAGSENIGRS-GAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRESKL 266
GK +LVDLAG+E + A + E IN+SLL L CI AL + H P+RESKL
Sbjct: 258 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKL 317
Query: 267 TRLLQDS-LGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNIT 310
T++L+DS +G ++T +IA +SP + E TL+TL YA R K ++
Sbjct: 318 TQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 362
Score = 93.4 bits (231), Expect = 2e-21
Identities = 46/154 (29%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKE------RVNDKISKTFGFDRVFSQESKQVDVYK 412
PLN E A K ++ S + + E ++ F FD F + + VY+
Sbjct: 40 PLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYR 99
Query: 413 YVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHL 472
+ PL+ + G T FAYGQTG+GKT TM G+ S + GI A +
Sbjct: 100 FTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK-----SQNASKGIYAMASRDV 154
Query: 473 FDELRLL--GDAEFTVRVSFLEIYNEELIDLLSP 504
F + V V+F EIYN ++ DLL+
Sbjct: 155 FLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNK 188
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 203 bits (517), Expect = 5e-61
Identities = 110/295 (37%), Positives = 157/295 (53%), Gaps = 28/295 (9%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T VDV+K V L+ L GYN +FAYGQTG+GKTFTM +P GI
Sbjct: 62 DTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM-------------LNPGDGI 107
Query: 86 VPRAMNHLFDELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTDD---ITKLRLFEDSAR 140
+P ++H+F+ + L ++ V F+EIYNE ++DLL ++ T + L +
Sbjct: 108 IPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRH 167
Query: 141 ---KGSVIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKD 197
+ I + + +++ V IL+K ++ R TA+T N HSS SH+IF I + +
Sbjct: 168 DQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSN 227
Query: 198 NSLDGEELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVE--- 254
G LNLVDLAGSE I S R RE NIN+SL LG I AL +
Sbjct: 228 AKTGAH---SYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDS 284
Query: 255 KTPHIPYRESKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNI 309
HIP+R SKLT LLQ SL G +KT + +SP+ ++ ETL++L +A + +
Sbjct: 285 TKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNST 339
Score = 80.0 bits (196), Expect = 6e-17
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 21/156 (13%)
Query: 359 PLNSVERAAKSCSIV-----DCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKY 413
P + + I D S + + + + N F FD++F Q+ VDV+K
Sbjct: 11 PALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE 70
Query: 414 VVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLF 473
V L+ L GYN +FAYGQTG+GKTFTM +P GI+P ++H+F
Sbjct: 71 VG-QLVQSSLDGYNVCIFAYGQTGSGKTFTM-------------LNPGDGIIPSTISHIF 116
Query: 474 DELRLLG--DAEFTVRVSFLEIYNEELIDLLSPTDD 507
+ + L ++ V F+EIYNE ++DLL ++
Sbjct: 117 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNN 152
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 198 bits (503), Expect = 1e-58
Identities = 98/285 (34%), Positives = 151/285 (52%), Gaps = 23/285 (8%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
++ D+++ V +PLI L GYN +FAYGQTG+GKT+TM+G + G+
Sbjct: 104 SSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV-----------GV 151
Query: 86 VPRAMNHLFDELRLLGDAEFT--VRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGS 143
+PR ++ LFD +R + + ++ +FLEIYNE L DLLS + + + K
Sbjct: 152 IPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN--EQKDMEIRMAKNNKND 209
Query: 144 VIIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGE 203
+ + + E+ V + + + ++ R TA+T N SSRSH + + + + +
Sbjct: 210 IYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRH---AEK 266
Query: 204 ELLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRE 263
+ + G +NLVDLA S R E NIN+SL L I AL++K HIPYR
Sbjct: 267 QEISVGSINLVDLA----GSESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRN 322
Query: 264 SKLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKN 308
SKLT LL SLGG +KT + VSP Q +E++ +L +A +
Sbjct: 323 SKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 367
Score = 81.1 bits (199), Expect = 4e-17
Identities = 53/152 (34%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDK---ISKTFGFDRVFSQESKQVDVYKYVV 415
P E C+ S K + F FD+VF S Q D+++ V
Sbjct: 55 PPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMV- 113
Query: 416 NPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDE 475
+PLI L GYN +FAYGQTG+GKT+TM+G + G++PR ++ LFD
Sbjct: 114 SPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV-----------GVIPRTVDLLFDS 162
Query: 476 LRLLGDAEFT--VRVSFLEIYNEELIDLLSPT 505
+R + + ++ +FLEIYNE L DLLS
Sbjct: 163 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 194
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 197 bits (500), Expect = 3e-58
Identities = 113/302 (37%), Positives = 170/302 (56%), Gaps = 17/302 (5%)
Query: 26 TTIVDVYKYVVNPLIDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGI 85
T DV++ L+ + GYN +FAYGQTG+GKTFT+ G SN
Sbjct: 54 ATQDDVFEDTK-YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLT---------- 102
Query: 86 VPRAMNHLFDEL-RLLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRLFEDSARKGSV 144
PRAM+ LF + + F+++ +E+Y + L+DLL P +L+L KG V
Sbjct: 103 -PRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA-KRLKLDIKKDSKGMV 160
Query: 145 IIQGLEEKAVHNKDEVYKILEKGSQKRQTAATLMNAHSSRSHTIFTITIHIKDNSLDGEE 204
++ + ++ +E+ I+++GS++R T TLMN SSRSH I ++ I + +
Sbjct: 161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTN---LQTQ 217
Query: 205 LLRTGKLNLVDLAGSENIGRSGAQDKRAREAGNINQSLLTLGRCITALVEKTPHIPYRES 264
+ GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG I+AL HIPYR
Sbjct: 218 AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNH 277
Query: 265 KLTRLLQDSLGGRTKTSIIATVSPAQLNMEETLSTLDYAHRAKNITNRPEINQKMSKKAL 324
KLT L+ DSLGG KT + +SPA+ N++ET ++L YA R ++I N P N + A
Sbjct: 278 KLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVAR 337
Query: 325 LR 326
L+
Sbjct: 338 LK 339
Score = 83.5 bits (205), Expect = 6e-18
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 359 PLNSVERAAKSCSIVDCSSSREITIKERVNDKISKTFGFDRVFSQESKQVDVYKYVVNPL 418
PL E AK + + E T++ D +K +DRVF + Q DV++ L
Sbjct: 10 PLCEKEIIAKERNAIRSVD--EFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTK-YL 66
Query: 419 IDEVLSGYNCTVFAYGQTGTGKTFTMEGEKSNDPSISWQDDPLSGIVPRAMNHLFDEL-R 477
+ + GYN +FAYGQTG+GKTFT+ G SN PRAM+ LF + +
Sbjct: 67 VQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLT-----------PRAMSELFRIMKK 115
Query: 478 LLGDAEFTVRVSFLEIYNEELIDLLSPTDDITKLRHTSE 516
F+++ +E+Y + L+DLL P +
Sbjct: 116 DSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKK 154
Score = 28.0 bits (61), Expect = 3.8
Identities = 6/35 (17%), Positives = 19/35 (54%)
Query: 516 EYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNE 550
++E+ +L++ + +E+ G E +++ +E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 27.4 bits (60), Expect = 5.1
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 507 DITKLRHTSEYTEEIEKLRRDLQAAREKNGVFLAAENYDQMVNELYAE 554
+ + H + + E + RR+++ + F + ++ Y
Sbjct: 15 NPELITHILDGSPENTRRRREIENLILNDPDFQHEDYNFLTRSQRYEV 62
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 5.1
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 39 LIDEVLSGYNCTVFAYGQTGTGKT 62
+ D++ T+ G GKT
Sbjct: 1 IEDDIFRKKRLTIMD-LHPGAGKT 23
Score = 27.2 bits (59), Expect = 5.1
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 418 LIDEVLSGYNCTVFAYGQTGTGKT 441
+ D++ T+ G GKT
Sbjct: 1 IEDDIFRKKRLTIMD-LHPGAGKT 23
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 26.9 bits (59), Expect = 6.0
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 71 NDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTV 107
+P ++ D+P SG+ + L+ T+
Sbjct: 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 186
Score = 26.9 bits (59), Expect = 6.0
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 450 NDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTV 486
+P ++ D+P SG+ + L+ T+
Sbjct: 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 186
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 26.9 bits (59), Expect = 6.6
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 16/95 (16%)
Query: 279 KTSIIATVSPAQLNMEETLSTL---------------DYAHRAKNITNRPEINQKMSKKA 323
T II T+ PA + ETL + + + A+ I N + +
Sbjct: 32 NTGIICTIGPASRS-VETLKEMIKSGMNVARMNFSHGTHEYHAETIKNVRTATESFASDP 90
Query: 324 LLRVTSINMEETLSTLDYAHRAKNITNRPEINQKM 358
+L +T +++ E + M
Sbjct: 91 ILYRPVAVALDTKGPAVSEKDIQDLKFGVEQDVDM 125
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.5 bits (58), Expect = 8.2
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 71 NDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTV 107
+P + D+P++G+ P + +F+ + L T
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF 203
Score = 26.5 bits (58), Expect = 8.2
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 450 NDPSISWQDDPLSGIVPRAMNHLFDELRLLGDAEFTV 486
+P + D+P++G+ P + +F+ + L T
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF 203
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 25.4 bits (55), Expect = 10.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 45 SGYNCTVFAYGQTGTGKTFTMEGEKS 70
SG TV+ + T TF+++
Sbjct: 6 SGMLITVYCVRRDLTEVTFSLQVNPD 31
Score = 25.4 bits (55), Expect = 10.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 424 SGYNCTVFAYGQTGTGKTFTMEGEKS 449
SG TV+ + T TF+++
Sbjct: 6 SGMLITVYCVRRDLTEVTFSLQVNPD 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.364
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,074,321
Number of extensions: 99637
Number of successful extensions: 423
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 45
Length of query: 583
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 493
Effective length of database: 1,171,896
Effective search space: 577744728
Effective search space used: 577744728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.7 bits)