BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy945
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y69|D Chain D, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|Q Chain Q, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
Length = 169
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
P Y+D +P P + K ++ + LK+KEK W +L+++EK LYR F ++F EMN
Sbjct: 36 PSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR 95
Query: 270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
T EWK G A F+ T LL + Y G P T EE + ++M+D++ P
Sbjct: 96 STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIP---HTFEEEWVAKQTKRMLDMKVAP 152
Query: 328 ITGTASKWDYEKNDWKK 344
I G ++KWDY+KN+WKK
Sbjct: 153 IQGFSAKWDYDKNEWKK 169
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 31 NEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIA--FMVVTVSL 88
++ LK+KEK W +L+++EK LYR F ++F EMN ST EWK G A F+ T L
Sbjct: 58 SQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALL 117
Query: 89 LTYVLMYKVG 98
L + Y G
Sbjct: 118 LIWEKHYVYG 127
>pdb|1OCC|D Chain D, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|Q Chain Q, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|D Chain D, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|Q Chain Q, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|D Chain D, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|Q Chain Q, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1V54|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYS|D Chain D, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|Q Chain Q, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2EIJ|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|D Chain D, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|Q Chain Q, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|D Chain D, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|Q Chain Q, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|D Chain D, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|Q Chain Q, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|D Chain D, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|Q Chain Q, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|D Chain D, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|D Chain D, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|Q Chain Q, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|D Chain D, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|D Chain D, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|D Chain D, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|D Chain D, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3ASN|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|D Chain D, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|Q Chain Q, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|2YBB|O Chain O, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 147
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 6/137 (4%)
Query: 211 PGYIDNPMFPYPSI-RFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNA 269
P Y+D +P P + K ++ + LK+KEK W +L+++EK LYR F ++F EMN
Sbjct: 14 PSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR 73
Query: 270 PTGEWKGAFGIA--FMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
T EWK G A F+ T LL + Y G P T EE + ++M+D++ P
Sbjct: 74 STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIP---HTFEEEWVAKQTKRMLDMKVAP 130
Query: 328 ITGTASKWDYEKNDWKK 344
I G ++KWDY+KN+WKK
Sbjct: 131 IQGFSAKWDYDKNEWKK 147
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 31 NEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIA--FMVVTVSL 88
++ LK+KEK W +L+++EK LYR F ++F EMN ST EWK G A F+ T L
Sbjct: 36 SQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALL 95
Query: 89 LTYVLMYKVG 98
L + Y G
Sbjct: 96 LIWEKHYVYG 105
>pdb|3I2E|A Chain A, Crystal Structure Of Human Dimethylarginine
Dymethylaminohydrolase-1 (Ddah-1)
pdb|3I2E|B Chain B, Crystal Structure Of Human Dimethylarginine
Dymethylaminohydrolase-1 (Ddah-1)
pdb|3I4A|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) In Complex With N5-(1-
Iminopropyl)-L-Ornithine
pdb|3I4A|B Chain B, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) In Complex With N5-(1-
Iminopropyl)-L-Ornithine
pdb|3P8E|A Chain A, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Covalently Bound With
N5-(1-Iminopentyl)-L-Ornithine
pdb|3P8E|B Chain B, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Covalently Bound With
N5-(1-Iminopentyl)-L-Ornithine
Length = 308
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 96 KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
+V + A RQH+ +V +L LGL V+ELP DE LP+ VF+ED AV+ LIT+PG
Sbjct: 60 EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 119
Query: 155 QRHKEV 160
R KEV
Sbjct: 120 SRRKEV 125
>pdb|3P8P|A Chain A, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Variant C274s Bound
With N5-(1-Iminopentyl)-L-Ornithine
pdb|3P8P|B Chain B, Crystal Structure Of Human Dimethylarginine
Dimethylaminohydrolase-1 (Ddah-1) Variant C274s Bound
With N5-(1-Iminopentyl)-L-Ornithine
Length = 308
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 96 KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
+V + A RQH+ +V +L LGL V+ELP DE LP+ VF+ED AV+ LIT+PG
Sbjct: 60 EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 119
Query: 155 QRHKEV 160
R KEV
Sbjct: 120 SRRKEV 125
>pdb|2JAJ|A Chain A, Ddah1 Complexed With L-257
pdb|2JAJ|B Chain B, Ddah1 Complexed With L-257
Length = 289
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 96 KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
+V + A RQH+ +V +L LGL V+ELP DE LP+ VF+ED AV+ LIT+PG
Sbjct: 41 EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 100
Query: 155 QRHKEV 160
R KEV
Sbjct: 101 SRRKEV 106
>pdb|2JAI|A Chain A, Ddah1 Complexed With Citrulline
pdb|2JAI|B Chain B, Ddah1 Complexed With Citrulline
Length = 289
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 96 KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
+V + A RQH+ +V +L LGL V+ELP DE LP+ VF+ED AV+ LIT+PG
Sbjct: 41 EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 100
Query: 155 QRHKEV 160
R KEV
Sbjct: 101 SRRKEV 106
>pdb|2C6Z|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With Citrulline
pdb|2CI3|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase Crystal Form I
pdb|2CI4|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I Crystal Form Ii
pdb|2CI5|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With L-Homocysteine
pdb|2CI5|B Chain B, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With L-Homocysteine
pdb|2CI6|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I Bound With Zinc Low Ph
pdb|2CI7|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With Zinc, High Ph
Length = 284
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 102 ARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKE 159
A RQH+ +V +L LGL V++LP DE LP+ VF+ED AV+ LIT+PG R KE
Sbjct: 42 AERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKE 100
>pdb|3BPB|A Chain A, Crystal Structure Of The Dimethylarginine
Dimethylaminohydrolase H162g Adduct With S-Methyl-L-
Thiocitrulline
pdb|3BPB|B Chain B, Crystal Structure Of The Dimethylarginine
Dimethylaminohydrolase H162g Adduct With S-Methyl-L-
Thiocitrulline
Length = 254
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 86 VSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGI 145
V LT + K +A QH +++ L+ +D+ LPPDE P+SVF+ED + +
Sbjct: 15 VDGLTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRC 74
Query: 146 VLITKPGNTQRHKEVAV 162
+IT+PG R E +
Sbjct: 75 AIITRPGAESRRGETEI 91
>pdb|1H70|A Chain A, Ddah From Pseudomonas Aeruginosa. C249s Mutant Complexed
With Citrulline
Length = 255
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 86 VSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGI 145
V LT + K +A QH +++ L+ +D+ LPPDE P+SVF+ED + +
Sbjct: 16 VDGLTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRC 75
Query: 146 VLITKPGNTQRHKEVAV 162
+IT+PG R E +
Sbjct: 76 AIITRPGAESRRGETEI 92
>pdb|3RHY|A Chain A, Crystal Structure Of The Dimethylarginine
Dimethylaminohydrolase Adduct With
4-Chloro-2-Hydroxymethylpyridine
pdb|3RHY|B Chain B, Crystal Structure Of The Dimethylarginine
Dimethylaminohydrolase Adduct With
4-Chloro-2-Hydroxymethylpyridine
Length = 254
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 86 VSLLTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGI 145
V LT + K +A QH +++ L+ +D+ LPPDE P+SVF+ED + +
Sbjct: 15 VDGLTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRC 74
Query: 146 VLITKPGNTQRHKEVAV 162
+IT+PG R E +
Sbjct: 75 AIITRPGAESRRGETEI 91
>pdb|2CI1|A Chain A, Crystal Structure Of Dimethylarginine
Dimethylaminohydrolase I In Complex With S-Nitroso-
Lhomocysteine
Length = 276
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 96 KVGIDEARRQHESFVALL-RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNT 154
+V A RQH+ +V +L LGL V++LP DE LP+ VF+ED AV+ LIT+PG
Sbjct: 30 EVDFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVXEETALITRPGAP 89
Query: 155 QRHKE 159
R KE
Sbjct: 90 SRRKE 94
>pdb|2ABR|A Chain A, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|B Chain B, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|C Chain C, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|D Chain D, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
Length = 418
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 99 IDEARRQHESFVALLRDLGLDVIEL 123
+++A+R H FV +R+ G+DV+E+
Sbjct: 48 VNQAKRDHFDFVTKMRERGIDVLEM 72
>pdb|2ACI|A Chain A, Structure Of D166a Arginine Deiminase
pdb|2ACI|B Chain B, Structure Of D166a Arginine Deiminase
pdb|2ACI|C Chain C, Structure Of D166a Arginine Deiminase
pdb|2ACI|D Chain D, Structure Of D166a Arginine Deiminase
Length = 418
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 99 IDEARRQHESFVALLRDLGLDVIEL 123
+++A+R H FV +R+ G+DV+E+
Sbjct: 48 VNQAKRDHFDFVTKMRERGIDVLEM 72
>pdb|2A9G|A Chain A, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|B Chain B, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|C Chain C, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|D Chain D, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
Length = 418
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 99 IDEARRQHESFVALLRDLGLDVIEL 123
+++A+R H FV +R+ G+DV+E+
Sbjct: 48 VNQAKRDHFDFVTKMRERGIDVLEM 72
>pdb|2AAF|A Chain A, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|B Chain B, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|C Chain C, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|D Chain D, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
Length = 418
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 99 IDEARRQHESFVALLRDLGLDVIEL 123
+++A+R H FV +R+ G+DV+E+
Sbjct: 48 VNQAKRDHFDFVTKMRERGIDVLEM 72
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Query: 106 HESFVALLRDLGLDVI-ELPPDED-LPESVFIEDTAVIVNGIVLITKPGNTQRHKEVA 161
HE + +L+D GL+VI E PDED L E ++D V I++ +KP T+R E A
Sbjct: 13 HEKAIQVLKDAGLEVIYEEYPDEDRLVE--LVKD----VEAIIVRSKPKVTRRVIESA 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,465,505
Number of Sequences: 62578
Number of extensions: 369722
Number of successful extensions: 881
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 26
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)