Query psy945
Match_columns 344
No_of_seqs 337 out of 823
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:38:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_D Cytochrome C oxidase su 100.0 3.1E-59 1.1E-63 405.4 8.6 146 198-344 1-147 (147)
2 2y69_D Cytochrome C oxidase su 100.0 1E-58 3.6E-63 409.6 8.9 149 195-344 20-169 (169)
3 1v54_D Cytochrome C oxidase su 99.9 1.5E-26 5.2E-31 200.6 -2.7 79 30-108 35-117 (147)
4 2y69_D Cytochrome C oxidase su 99.9 3.8E-26 1.3E-30 201.9 -2.7 79 30-108 57-139 (169)
5 3i4a_A N(G),N(G)-dimethylargin 99.9 1.1E-22 3.9E-27 195.8 8.3 184 55-261 16-217 (308)
6 1h70_A NG, NG-dimethylarginine 99.8 4.9E-21 1.7E-25 178.9 6.5 195 94-312 24-242 (255)
7 2ci1_A NG, NG-dimethylarginine 99.8 1.4E-19 5E-24 170.4 9.7 135 95-239 29-177 (275)
8 1s9r_A Arginine deiminase; hyd 99.8 2.1E-20 7.1E-25 186.4 1.4 198 96-312 48-390 (410)
9 1bwd_A ADT, protein (inosamine 99.8 3.3E-19 1.1E-23 173.9 5.3 201 92-313 52-325 (348)
10 1jdw_A L-arginine\:glycine ami 99.7 5.5E-20 1.9E-24 184.2 -1.5 208 86-312 95-399 (423)
11 2a9g_A Arginine deiminase; arg 99.7 1.8E-18 6.3E-23 172.6 2.5 148 96-261 45-299 (418)
12 4e4j_A Arginine deiminase; L-a 99.6 8.4E-17 2.9E-21 161.1 6.0 151 94-262 71-316 (433)
13 2ewo_A Putative agmatine deimi 69.3 7.5 0.00026 38.0 6.3 70 130-206 93-178 (377)
14 2jer_A Agmatine deiminase; hyd 42.7 61 0.0021 31.7 7.7 121 70-206 18-174 (389)
15 3zxa_C Capsid protein; ssRNA v 39.4 6.3 0.00021 38.3 0.0 32 25-57 9-40 (347)
16 4a3n_A Transcription factor SO 33.4 32 0.0011 24.4 3.1 25 41-66 39-63 (71)
17 1hry_A Human SRY; DNA, DNA-bin 31.8 31 0.0011 24.9 2.8 31 42-73 42-72 (76)
18 1wz6_A HMG-box transcription f 30.5 39 0.0013 24.9 3.3 32 42-74 45-76 (82)
19 2fsv_C NAD(P) transhydrogenase 25.0 41 0.0014 30.2 2.8 30 99-128 57-89 (203)
20 1djl_A Transhydrogenase DIII; 24.6 42 0.0014 30.2 2.8 31 98-128 55-88 (207)
21 4eg0_A D-alanine--D-alanine li 23.9 74 0.0025 28.9 4.5 30 99-128 27-56 (317)
22 2q7d_A Inositol-tetrakisphosph 23.5 66 0.0023 30.4 4.2 31 106-136 35-70 (346)
23 1j46_A SRY, sex-determining re 23.4 55 0.0019 24.3 2.9 31 42-73 42-72 (85)
24 1gt0_D Transcription factor SO 22.8 58 0.002 23.8 2.9 21 41-62 39-59 (80)
25 3mm5_A Sulfite reductase, diss 22.4 61 0.0021 32.0 3.8 25 33-57 5-29 (418)
26 2e6o_A HMG box-containing prot 22.2 53 0.0018 24.6 2.6 16 42-58 55-70 (87)
27 1opo_A Coat protein; plant vir 22.0 19 0.00065 34.9 0.0 31 25-56 16-46 (348)
28 3mil_A Isoamyl acetate-hydroly 20.7 1.2E+02 0.0041 25.3 4.9 34 94-127 90-123 (240)
29 3u2b_C Transcription factor SO 20.7 63 0.0021 23.4 2.7 19 40-59 38-56 (79)
30 1r45_A Exoenzyme C3, mono-ADP- 20.7 48 0.0016 29.0 2.4 25 41-68 24-48 (204)
No 1
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=100.00 E-value=3.1e-59 Score=405.43 Aligned_cols=146 Identities=33% Similarity=0.639 Sum_probs=141.4
Q ss_pred CCeEEEeeeccCCCcccCCCCCCCCCcccccc-ccccccccccccCCCcCCChHHHHhhchhhccccccCCcCCCcchhh
Q psy945 198 PNREVVGYGFNGEPGYIDNPMFPYPSIRFKAI-TKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKG 276 (344)
Q Consensus 198 g~r~~VG~G~rt~p~y~d~~d~pLpd~rf~~~-~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~~~~~~e~k~ 276 (344)
|+|++||||.+|.|.|.|++|+|+|++||++. ++++++|+|||||||++||++|||||||+||||||||+++|+||||.
T Consensus 1 g~r~vv~~~~~~~p~Y~d~~d~P~P~i~f~~~lt~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~p~gewK~ 80 (147)
T 1v54_D 1 AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKT 80 (147)
T ss_dssp ---CCCCGGGTTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHH
T ss_pred CCCcccccCcCCCceecccCCCCCCCccccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhH
Confidence 57899999999999999999999999999976 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHcCCCCCcccccccccccCccCC
Q psy945 277 AFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 344 (344)
Q Consensus 277 vfg~~~v~ig~~~~~~~~~r~~~~~~p~P~tlseewk~a~~~~~~~~~~nPi~G~ss~wdY~~~~wk~ 344 (344)
|||++++++|+++++|+++|.+ +|+|+|+||++|||+||+||||++++|||+|+||+|||+||+|||
T Consensus 81 v~g~v~~~i~~s~~~f~~~r~~-v~~p~P~T~~~Ewqeaq~erm~~~~~nPi~G~ss~wdYe~~~Wkk 147 (147)
T 1v54_D 81 VVGAAMFFIGFTALLLIWEKHY-VYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-ccCCCCCCCCHHHHHHHHHHHHHccCCCCcCchhhhchhhcccCC
Confidence 9999999999999999999999 899999999999999999999999999999999999999999997
No 2
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=1e-58 Score=409.62 Aligned_cols=149 Identities=32% Similarity=0.612 Sum_probs=141.5
Q ss_pred cCCCCeEEEeeeccCCCcccCCCCCCCCCcccccc-ccccccccccccCCCcCCChHHHHhhchhhccccccCCcCCCcc
Q psy945 195 DFFPNREVVGYGFNGEPGYIDNPMFPYPSIRFKAI-TKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGE 273 (344)
Q Consensus 195 ~~ig~r~~VG~G~rt~p~y~d~~d~pLpd~rf~~~-~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~~pe~~~~~~e 273 (344)
+..|+|++||||.+|.|.|.|++|+|+|++||++. ++++++|+|||||||++||+|||||+||+||||||||+++|+||
T Consensus 20 ~~~g~revv~~~~~~~p~Y~Dr~d~P~P~irf~~~~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~ptgE 99 (169)
T 2y69_D 20 CVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNE 99 (169)
T ss_dssp ------CCCCGGGTTSCCCCCCTTCCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSH
T ss_pred eeecCcceeccCcCCCceecccCCCCCCCCcccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCc
Confidence 44589999999999999999999999999999977 89999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHcCCCCCcccccccccccCccCC
Q psy945 274 WKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNPITGTASKWDYEKNDWKK 344 (344)
Q Consensus 274 ~k~vfg~~~v~ig~~~~~~~~~r~~~~~~p~P~tlseewk~a~~~~~~~~~~nPi~G~ss~wdY~~~~wk~ 344 (344)
||.|||++++++|+++++|+++|.+ +|+|+|+||++|||+||+||||++++|||+|+||+||||||+|||
T Consensus 100 WK~V~ggv~~~i~~s~~~f~~~r~~-v~~p~P~T~~~Ewqeaq~erml~~~~NPitG~SSkwdYe~~~WKk 169 (169)
T 2y69_D 100 WKTVVGAAMFFIGFTALLLIWEKHY-VYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCCCCCHHHHHHHHHHHHHcCCCCCcCchhhhccccceeCC
Confidence 9999999999999999999999999 899999999999999999999999999999999999999999997
No 3
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=99.91 E-value=1.5e-26 Score=200.60 Aligned_cols=79 Identities=32% Similarity=0.543 Sum_probs=69.8
Q ss_pred CCCccchhhccCCccccCHHHHHHHHHHhhhhhHHHhhccCCCchhhhhhheeeeeeeeEEeecccc----cChHHHHHH
Q psy945 30 SNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYK----VGIDEARRQ 105 (344)
Q Consensus 30 ~~~~~l~~ke~~~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk~~~~~~~~~~~vs~lin~~M~~----vD~d~A~~Q 105 (344)
.++.+|||||||||++||+||||+|||+||||||+||++|+||||+|+|++|+++|++++++.|+.. +-....-+|
T Consensus 35 ~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~p~gewK~v~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~~~E 114 (147)
T 1v54_D 35 ASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEE 114 (147)
T ss_dssp HHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHH
T ss_pred HHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Confidence 4589999999999999999999999999999999999999999999999999999999999998873 223444556
Q ss_pred HHH
Q psy945 106 HES 108 (344)
Q Consensus 106 h~~ 108 (344)
|++
T Consensus 115 wqe 117 (147)
T 1v54_D 115 WVA 117 (147)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 4
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=99.90 E-value=3.8e-26 Score=201.86 Aligned_cols=79 Identities=32% Similarity=0.543 Sum_probs=70.1
Q ss_pred CCCccchhhccCCccccCHHHHHHHHHHhhhhhHHHhhccCCCchhhhhhheeeeeeeeEEeecccc----cChHHHHHH
Q psy945 30 SNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLMYK----VGIDEARRQ 105 (344)
Q Consensus 30 ~~~~~l~~ke~~~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk~~~~~~~~~~~vs~lin~~M~~----vD~d~A~~Q 105 (344)
.++++|||||||||++||+||||+|||+||||||+||++|+||||+|+|++|+++|++++++.|+.. +-....-+|
T Consensus 57 ~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~ptgEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~~~E 136 (169)
T 2y69_D 57 ASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEE 136 (169)
T ss_dssp HHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHH
T ss_pred HHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHH
Confidence 4689999999999999999999999999999999999999999999999999999999999998873 233444566
Q ss_pred HHH
Q psy945 106 HES 108 (344)
Q Consensus 106 h~~ 108 (344)
|++
T Consensus 137 wqe 139 (169)
T 2y69_D 137 WVA 139 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 5
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=99.87 E-value=1.1e-22 Score=195.82 Aligned_cols=184 Identities=26% Similarity=0.305 Sum_probs=127.3
Q ss_pred HHHhhhhhHHHhhc--cCCCchhhhhhheeeeeeee----EEeecccccChHHHHHHHHHHHHHHH-HCCCeEEEeCCCC
Q psy945 55 YRASFAQTFVEMNA--STGEWKGAFGIAFMVVTVSL----LTYVLMYKVGIDEARRQHESFVALLR-DLGLDVIELPPDE 127 (344)
Q Consensus 55 yr~~f~~t~~e~~~--~~~ewk~~~~~~~~~~~vs~----lin~~M~~vD~d~A~~Qh~~lv~~Lr-~~Gv~V~~L~~~~ 127 (344)
-|-|..-+||-|-. +.++.|.+| +--++-++ +....-.++|+++|++||++|+++|+ ++||+|++++|.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~ai---vr~p~~s~~~~~~~~~~~~~~d~~~A~~q~~~l~~~Lr~~~Gv~V~~l~~~~ 92 (308)
T 3i4a_A 16 PRGSHMASMAGLGHPAAFGRATHAV---VRALPESLGQHALRSAKGEEVDVARAERQHQLYVGVLGSKLGLQVVELPADE 92 (308)
T ss_dssp ---------------CCTTCCSEEE---EECCCTTHHHHSCCSSCCCCCCHHHHHHHHHHHHHHHHTTTCCEEEEECCCT
T ss_pred cCcchhhhhhhccCcccccceeEEE---EeCCCHHHhccccccccCCCCCHHHHHHHHHHHHHHHhhcCCCEEEEcCCCC
Confidence 35666677777776 666666542 11111111 12222457999999999999999999 9999999999999
Q ss_pred CCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcccccccc--ccc-ccccCCCCcccccccCCCCeEEEe
Q psy945 128 DLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKSLAAS--YSA-ASAHSNEPVAKEHFDFFPNREVVG 204 (344)
Q Consensus 128 ~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~~~~i~--~~~-~~~~~~eG~~~~~~~~ig~r~~VG 204 (344)
++||+||+||++++++++++++||+.++||+|...+. .|++. .++. .+. .+++.+|| |++.+|+.++||
T Consensus 93 ~~Pd~vF~rD~~~vi~~~vii~~m~~~~Rr~E~~~~~--~~l~~--~g~~i~~~~~~~~~lEGG----Dvl~~g~~v~vG 164 (308)
T 3i4a_A 93 SLPDCVFVEDVAVVCEETALITRPGAPSRRKEVDMMK--EALEK--LQLNIVEMKDENATLDGG----DVLFTGREFFVG 164 (308)
T ss_dssp TCTTTTCGGGGEEEETTEEEECCCSSGGGGGGHHHHH--HHHHT--TTCEEEECCCTTCCCCGG----GEEECSSCEEEE
T ss_pred CCCCeEeecCeEEEECCEEEEeCCCchhhhhhHHHHH--HHHHH--CCCeEEEccCCCCcCccc----eEEEECCEEEEE
Confidence 9999999999999999999999999999999999876 67762 2332 222 35677777 666678889999
Q ss_pred eeccCCCcccC--------CCCCCCCCccccccccccccccccccCCCcCCChHHHHhhchhhcc
Q psy945 205 YGFNGEPGYID--------NPMFPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFA 261 (344)
Q Consensus 205 ~G~rt~p~y~d--------~~d~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~ 261 (344)
+|.||++..++ ....+++-++++|+|+.++.|++. +..+|+..+.
T Consensus 165 ~s~RTn~~gi~~l~~~l~~~~Vv~v~~~~~~HLDt~~~~l~~~------------~~lv~~~~~~ 217 (308)
T 3i4a_A 165 LSKRTNQRGAEILADTFKDYAVSTVPVADGLHLKSFCSMAGPN------------LIAIGSSESA 217 (308)
T ss_dssp ESSSCCHHHHHHHHHHTTTSCEEEEECCTTCCGGGSEEEEETT------------EEEEECSHHH
T ss_pred EchhcCHHHHHHHHHHcCCCeEEEEECCCccChhheEEeeCCC------------EEEEECchhc
Confidence 99999998773 122223333889999999999854 5666665554
No 6
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Probab=99.82 E-value=4.9e-21 Score=178.92 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=144.0
Q ss_pred ccccChHHHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcccc
Q psy945 94 MYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKS 173 (344)
Q Consensus 94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~~ 173 (344)
..++|.++|++||++|+++||++|++|+++++.+++||+||+||+++++++++++++|+.++||+|...++ .+++...
T Consensus 24 ~~~~~~~~A~~e~~~~~~~L~~~Gv~V~~l~~~~~~Pd~vF~rD~~~~~~~~~~~~~m~~~~R~~E~~~~~--~~l~~~g 101 (255)
T 1h70_A 24 LGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRCAIITRPGAESRRGETEIIE--ETVQRFY 101 (255)
T ss_dssp SCCCCHHHHHHHHHHHHHHHTTSSCEEEEECCCTTCTTTTCTTTTEEECSSCEEECBCSSGGGTTHHHHHH--HHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCEEEEcCCcccCcCcEeecCcEEEECCcEEEeCCCChHHhchHHHHH--HHHHHcC
Confidence 35889999999999999999999999999999999999999999999999999999999999999999876 5666211
Q ss_pred -cccccccccccCCCCcccccccCCCCeEEEeeeccCCCcccC----CC---C-----CCCCCccccccccccccccccc
Q psy945 174 -LAASYSAASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYID----NP---M-----FPYPSIRFKAITKELEPLKQKE 240 (344)
Q Consensus 174 -~~i~~~~~~~~~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d----~~---d-----~pLpd~rf~~~~~~l~~L~eke 240 (344)
..+..+..+...+|| +++..|+.+++|+|.||++..++ .. . ++++| ++|+|+.++.+++.
T Consensus 102 ~~~v~~~~~~~~lEGG----dv~~~g~~~~vg~s~Rt~~~~~~~l~~~l~~~g~~vi~~~~~~--~~HlD~~~~~v~~~- 174 (255)
T 1h70_A 102 PGKVERIEAPGTVEAG----DIMMVGDHFYIGESARTNAEGARQMIAILEKHGLSGSVVRLEK--VLHLKTGLAYLEHN- 174 (255)
T ss_dssp TTCEEECCTTCCBCGG----GEEEETTEEEEEECSSSCHHHHHHHHHHHHHTTCEEEEEECSS--SSSGGGSEEECSTT-
T ss_pred CCcEEEeCCCceEecc----eEEEECCEEEEEEccCCcHHHHHHHHHHHhhCCCEEEEEECCC--CcchhheeeecCCC-
Confidence 112222344667777 44445888999999999988772 11 2 44666 89999999999964
Q ss_pred cCCCcCCChHHHHhhchhhcccc-c--cCCc-CCCcchhhHHHHHHHHHHHHH-------HHHHHHHHhccCCCCCCCCc
Q psy945 241 KGDWKNLTLEEKKTLYRASFAQT-F--VEMN-APTGEWKGAFGIAFMVVTVSL-------LTYVLMYKVGIFPEKAETLS 309 (344)
Q Consensus 241 kgdWk~Ls~eEk~alY~~aF~~~-~--pe~~-~~~~e~k~vfg~~~v~ig~~~-------~~~~~~r~~~~~~p~P~tls 309 (344)
+..+|+..+.+. + =+.+ .|.++ .+++|++.++-.+ .+...++.. ++.++|.+++
T Consensus 175 -----------~~~~~~~~~~~~~~~~~~ii~~~~~e---~~~~N~l~i~~~Vi~~~~~~~~~~~l~~~-g~~vi~v~~~ 239 (255)
T 1h70_A 175 -----------NLLAAGEFVSKPEFQDFNIIEIPEEE---SYAANCIWVNERVIMPAGYPRTREKIARL-GYRVIEVDTS 239 (255)
T ss_dssp -----------EEEECGGGTTCGGGTTSEEEECCGGG---GGGGCCEEETTEEEEESSCHHHHHHHHTT-TCEEEEECCH
T ss_pred -----------EEEEECCcCCHhHhCceEEEECCCcc---cccccEEEECCEEEeCCCCHHHHHHHHHC-CCeEEEechH
Confidence 567777766542 1 1222 23333 3788887665211 123455666 7788888877
Q ss_pred HHH
Q psy945 310 EEH 312 (344)
Q Consensus 310 eew 312 (344)
|.-
T Consensus 240 el~ 242 (255)
T 1h70_A 240 EYR 242 (255)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 7
>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation, S-nitrosylation, zinc, MMA, ADMA, acetylation, metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB: 2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A* 2jai_A*
Probab=99.79 E-value=1.4e-19 Score=170.37 Aligned_cols=135 Identities=27% Similarity=0.400 Sum_probs=110.8
Q ss_pred cccChHHHHHHHHHHHHHHH-HCCCeEEEeCCCCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcccc
Q psy945 95 YKVGIDEARRQHESFVALLR-DLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPKS 173 (344)
Q Consensus 95 ~~vD~d~A~~Qh~~lv~~Lr-~~Gv~V~~L~~~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~~ 173 (344)
.++|.++|++||++|+++|+ ++|++|+.+++.+++||+||+||+++++++++++++|+.++|++|...++ .+++ .
T Consensus 29 ~~~~~~~A~~e~~~~~~~L~~~~Gv~V~~l~~~~~~Pd~vF~rD~~~v~~~~~~~~~~~~~~R~~E~~~~~--~~~~--~ 104 (275)
T 2ci1_A 29 DEVDFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVXEETALITRPGAPSRRKEADMMK--EALE--K 104 (275)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTTCCEEEEECCCTTCTTTTCGGGGEEEETTEEEECCCSSGGGTTHHHHHH--HHHH--H
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCcEEEEeCCCCCCCCceeccceEEEeCCceEEecCCcccccccHHHHH--HHHH--H
Confidence 47999999999999999999 89999999999999999999999999999999999999999999999877 5666 2
Q ss_pred cccccc---cccccCCCCcccccccCCCCeEEEeeeccCCCcccC--------CCC--CCCCCcccccccccccccccc
Q psy945 174 LAASYS---AASAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYID--------NPM--FPYPSIRFKAITKELEPLKQK 239 (344)
Q Consensus 174 ~~i~~~---~~~~~~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d--------~~d--~pLpd~rf~~~~~~l~~L~ek 239 (344)
.++... ..+...+|| +++..|+.+++|.|.||++..++ ... ++++| ++|+|+.++.+++.
T Consensus 105 ~g~~~~~~~~~~~~lEGG----dv~~~g~~~~vg~s~Rt~~~~~~~l~~~l~~~~V~~l~~~~--~~HlD~~~~~~~~~ 177 (275)
T 2ci1_A 105 LQLNIVEMKDENATLDGG----DVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPVVD--ALHLKSFCSMAGPN 177 (275)
T ss_dssp TTCEEEECCCTTCCCCGG----GEEECSSEEEEEESSSCCHHHHHHHHHHCTTSEEEEEECCS--SSSGGGSEEEEETT
T ss_pred cCCCEEEecCCCceEccc----cEEEECCEEEEEecCCCCHHHHHHHHHhcCCCeEEEeeCCC--CcChhhhccccCCC
Confidence 333222 234567777 55566888899999999988873 112 33444 79999988888754
No 8
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5- helix bundle domain, raction intermediate; HET: ARG; 1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Probab=99.78 E-value=2.1e-20 Score=186.45 Aligned_cols=198 Identities=16% Similarity=0.096 Sum_probs=145.5
Q ss_pred ccChHHHHHHHHHHHHHHHHCCCeEEEeCCC-------------------------------------------------
Q psy945 96 KVGIDEARRQHESFVALLRDLGLDVIELPPD------------------------------------------------- 126 (344)
Q Consensus 96 ~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~------------------------------------------------- 126 (344)
.++.++|++||++|+++||++||+|+++++.
T Consensus 48 ~~~~~~A~~Ehd~f~~~Lr~~GveV~~l~~l~~e~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 127 (410)
T 1s9r_A 48 ILESHDARKEHKQFVAELKANDINVVELIDLVAETYDLASQEAKDKLIEEFLEDSEPVLSEEHKVVVRNFLKAKKTSREL 127 (410)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHHHHSCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHTCSSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEcchhhhhhhhccCHHHHHHHHHHhhhccccccchhHHHHHHHHHHcCCcHHHH
Confidence 6899999999999999999999999999841
Q ss_pred -----------------------CCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcc-----ccccccc
Q psy945 127 -----------------------EDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKP-----KSLAASY 178 (344)
Q Consensus 127 -----------------------~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l-----~~~~i~~ 178 (344)
+.+||++|+||+++++++++++++|+.++||+|...++ .+++. +.+.+..
T Consensus 128 ~~~~~~g~~~~e~~~~~~~~~~~~plPn~~FtRD~~~~ig~gv~i~~m~~~~Rr~E~~~~~--~i~~~~p~f~~~~~~~~ 205 (410)
T 1s9r_A 128 VEIMMAGITKYDLGIEADHELIVDPMPNLYFTRDPFASVGNGVTIHYMRYKVRQRETLFSR--FVFSNHPKLINTPWYYD 205 (410)
T ss_dssp HHHHHHCEEHHHHTCCCSSSEEECCCGGGGCTTSSEEEEBTEEEECCCSSHHHHTTHHHHH--HHHHHCTTTTTCCEEEC
T ss_pred HHHHHcCCcHHHcccccccccccCCCCCeeecCCcEEEECCEEEEeCCCChHHcCcHHHHH--HHHHhChhhcCCCeEEe
Confidence 25999999999999999999999999999999999866 56552 1222233
Q ss_pred ccccccCCCCcccccccCCCCe-EEEeeeccCCCcccC--------C------CC--CCCCC-ccccccccccccccccc
Q psy945 179 SAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYID--------N------PM--FPYPS-IRFKAITKELEPLKQKE 240 (344)
Q Consensus 179 ~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d--------~------~d--~pLpd-~rf~~~~~~l~~L~eke 240 (344)
...+.+.+|| |++.+|+. ++||.|.||++..+. . +. +++|. ..++|+|+.++.|++.
T Consensus 206 ~~~~~~lEGG----Dvl~lg~~~v~vG~S~RTn~~gi~~la~~l~~~g~~~~~~V~~v~~p~~~~~mHLDtvft~l~~~- 280 (410)
T 1s9r_A 206 PSLKLSIEGG----DVFIYNNDTLVVGVSERTDLQTVTLLAKNIVANKECEFKRIVAINVPKWTNLMHLDTWLTMLDKD- 280 (410)
T ss_dssp GGGCSCCCGG----GEEECSSSEEEEEESSSCCHHHHHHHHHHHHHCTTCCCCEEEEEECCCBTTBCSGGGTEEECSSS-
T ss_pred cCCCCcccCc----ceEEECCCEEEEEECccCCHHHHHHHHHHhhhccCccceEEEEEEccCCccccchhheeeeccCC-
Confidence 3345667777 66667875 799999999998882 1 11 45665 6799999999999964
Q ss_pred cCCCcCCChHHHHhhchhhccc----------------------c------------ccCCcCCCc--ch------hhHH
Q psy945 241 KGDWKNLTLEEKKTLYRASFAQ----------------------T------------FVEMNAPTG--EW------KGAF 278 (344)
Q Consensus 241 kgdWk~Ls~eEk~alY~~aF~~----------------------~------------~pe~~~~~~--e~------k~vf 278 (344)
+..+|+..+++ . ..+.+..++ +. ...+
T Consensus 281 -----------~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lg~~~~~iI~~~~~~d~~~~~~eqw~~ 349 (410)
T 1s9r_A 281 -----------KFLYSPIANDVFKFWDYDLVNGGAEPQPVENGLPLEGLLQSIINKKPVLIPIAGEGASQMEIERETHFD 349 (410)
T ss_dssp -----------EEEECGGGTTTCEEEEEETTTSCSSCCCEEECCCHHHHHHHHHSSCCEEEETTCTTCCHHHHHHHHHTT
T ss_pred -----------eEEEccccccccceeeeecccccccccccccchhHHHHHHHhhCCCCCEEEECCCCcchhhhHHHHHhc
Confidence 56677766643 1 123333332 21 2247
Q ss_pred HHHHHHHHHH--------HHHHHHHHHhccCCCCCCCCcHHH
Q psy945 279 GIAFMVVTVS--------LLTYVLMYKVGIFPEKAETLSEEH 312 (344)
Q Consensus 279 g~~~v~ig~~--------~~~~~~~r~~~~~~p~P~tlseew 312 (344)
|+|++.++=+ ..+-..++.. |+.+++.+++|.-
T Consensus 350 g~N~L~i~pg~Vi~~~~n~~t~~~L~~~-G~~Vi~v~~sEl~ 390 (410)
T 1s9r_A 350 GTNYLAIRPGVVIGYSRNEKTNAALEAA-GIKVLPFHGNQLS 390 (410)
T ss_dssp TTCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEEECCHHHH
T ss_pred cCCEEEECCCEEEecCCCHHHHHHHHHC-CCEEEEechHHHh
Confidence 7887766522 2334567888 8999999998764
No 9
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2
Probab=99.75 E-value=3.3e-19 Score=173.88 Aligned_cols=201 Identities=13% Similarity=0.014 Sum_probs=142.0
Q ss_pred ecccccChHHHHHHHHHHHHHHHHCCCeEEEeCCCC------------CCCCceecCCceEEECCeEEEeCCCCccCcCh
Q psy945 92 VLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDE------------DLPESVFIEDTAVIVNGIVLITKPGNTQRHKE 159 (344)
Q Consensus 92 ~~M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~------------~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E 159 (344)
+|+ ++|.++|++||++|+++||++||+|+.+++.+ ++||+||+||+++++++++++++|+.++||+|
T Consensus 52 ~~~-~~~~~~A~~e~~~~~~~Lr~~Gv~V~~l~~~~~~~~~~~~~~~~~~pd~~F~rD~~~vi~~~vi~~~m~~~~R~~E 130 (348)
T 1bwd_A 52 AYP-DRVLKETEEELHVLAAELTKLGVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQTIIETPMALRSRFLE 130 (348)
T ss_dssp ECC-HHHHHHHHHHHHHHHHHHHHTTCEEECCCCCCSSSCEECSSCEECCCCSSCGGGSEEESSSEEEECCCSSGGGTTG
T ss_pred CCC-hHHHHHHHHHHHHHHHHHHHCCCEEEecCCCChhhhccCccccCCCcccccCCCcEEEECCcEEEcCCCChhhhhh
Confidence 444 77999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred hhhhHHHHhhcccc--------------------cccc---cccc-cccCCCCcccccccCCCCeEEEeeeccCCCcccC
Q psy945 160 VAVSATRALIKPKS--------------------LAAS---YSAA-SAHSNEPVAKEHFDFFPNREVVGYGFNGEPGYID 215 (344)
Q Consensus 160 ~~~~~t~~~~~l~~--------------------~~i~---~~~~-~~~~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d 215 (344)
...++ .+++.-. .++. .+.. ....+|| +++.+|+.++||.|.||++..+.
T Consensus 131 ~~~~~--~~l~~~~~~g~~w~~~p~p~~~~~~~d~~~~~~~~~~~~~~~lEGG----dv~~~g~~~~vg~s~Rt~~~~ie 204 (348)
T 1bwd_A 131 SLAYK--DLLLEYFASGSRWLSAPKPRLTDDSYAPQAPAGERLTDEEPVFDAA----NVLRFGTDLLYLVSDSGNELGAK 204 (348)
T ss_dssp GGGGH--HHHHHHHTTTCEEEECCCCCCCGGGBCTTSCTTCSBCSSSCCBCGG----GEEEETTEEEEECBTTBCHHHHH
T ss_pred HHHHH--HHHHHHhhcccccccCCCccccccccccCCcceeeccCCceeEecc----eEEEECCEEEEEecccCCHHHHH
Confidence 99876 5555210 0121 1222 3556777 44455888899999999887773
Q ss_pred C---------CC--CCCCCccccccccccccccccccCCCcCCChHHHHhhchhhcccc-cc------CCc-CCCcch--
Q psy945 216 N---------PM--FPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQT-FV------EMN-APTGEW-- 274 (344)
Q Consensus 216 ~---------~d--~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~~~-~p------e~~-~~~~e~-- 274 (344)
. .. ++++ ..++|+|+.++.+++. ++.+|+..|... .. +.+ .|.++-
T Consensus 205 ~l~~~l~~~~~v~~~~~~-~~~~HlDt~~~~v~~~------------~vl~~~~~~~~~~~~~~L~~~~iI~~~~~~~~~ 271 (348)
T 1bwd_A 205 WLQSAVGDTYTVHPCRKL-YASTHVDSTIVPLRPG------------LVLTNPSRVNDENMPDFLRSWENITCPELVDIG 271 (348)
T ss_dssp HHHHHHCTTSEEEEESSS-CCSSCGGGTEEEEETT------------EEEECTTTCCTTTSCGGGTTSEEEECCCCCCCC
T ss_pred HHHHHhcCCcEEEEecCC-CCCcchhheEEecCCC------------EEEEeCCCCCcHHHHHHhcCCEEEECCCccccc
Confidence 1 11 2233 5689999999999964 566676666532 11 111 111110
Q ss_pred --------hhHHHHHHHHHHHH--------HHHHHHHHHhccCCCCCCCCcHHHH
Q psy945 275 --------KGAFGIAFMVVTVS--------LLTYVLMYKVGIFPEKAETLSEEHR 313 (344)
Q Consensus 275 --------k~vfg~~~v~ig~~--------~~~~~~~r~~~~~~p~P~tlseewk 313 (344)
...+++|++.++=+ ......++.. |+.+++.+++|..+
T Consensus 272 ~~~~~~~~~~w~~~N~l~i~~~~Vi~~~~~~~~~~~L~~~-G~~vi~v~~~el~~ 325 (348)
T 1bwd_A 272 FTGDKPHCSVWIGMNLLVVRPDLAVVDRRQTALIRLLEKH-GMNVLPLQLTHSRT 325 (348)
T ss_dssp CCSSSCSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEEECCTTHHH
T ss_pred cccccccccccceeeEEEEcCCEEEEcCCCHHHHHHHHHC-CCEEEEEchHHHhc
Confidence 01258887655422 2234556777 88888888887654
No 10
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=99.75 E-value=5.5e-20 Score=184.18 Aligned_cols=208 Identities=11% Similarity=0.042 Sum_probs=146.2
Q ss_pred eeeEEeecccc------------cChHHHHHHHHHHHHHHHHCCCeEEEeCCCC-----CCCC-------ceecCCceEE
Q psy945 86 VSLLTYVLMYK------------VGIDEARRQHESFVALLRDLGLDVIELPPDE-----DLPE-------SVFIEDTAVI 141 (344)
Q Consensus 86 vs~lin~~M~~------------vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~-----~~PD-------~VF~~D~a~v 141 (344)
+.+.||++|+. +|.++|++||++|+++|+++||+|+.+++.+ ++|| ++|+||++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~A~~E~d~~v~~Lr~~GV~V~~l~~~~~~~~~~~PDf~~~~~n~vF~rD~~~v 174 (423)
T 1jdw_A 95 VKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIV 174 (423)
T ss_dssp HHTTSCGGGHHHHHHHTTSBSCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCCCTTCEEECSSCEEECCCBCCHHHHEEE
T ss_pred hhhccChhhhhhhhhccccccCchhHHHHHHHHHHHHHHHHHCCCEEEEcCchhhcccccCCccccCccceECCCCcEEE
Confidence 55778888642 6789999999999999999999999999987 7898 9999999999
Q ss_pred ECCeEEEeCCCCccCcChhhhhHHHHhhcc-ccccc-ccc----------------------------------c-cccc
Q psy945 142 VNGIVLITKPGNTQRHKEVAVSATRALIKP-KSLAA-SYS----------------------------------A-ASAH 184 (344)
Q Consensus 142 ~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l-~~~~i-~~~----------------------------------~-~~~~ 184 (344)
+++++++++|+.++|++|...++ .+++. ...+. +.. . ....
T Consensus 175 ig~~vii~~m~~~~Rr~E~~~~~--~il~~~~~~~~~~~~~P~p~~~d~~~d~~~~i~~~~~~~~~~~~~~~~~~e~e~~ 252 (423)
T 1jdw_A 175 VGNEIIEAPMAWRSRFFEYRAYR--SIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPC 252 (423)
T ss_dssp EBTEEEECCBSCGGGTTGGGGTH--HHHHHHHHTTCEEEECCCCCCCGGGBCTTCCCSSHHHHHHHHHHTCCSBCSSSCC
T ss_pred ECCeEEEcCCCchhhcccHHHHH--HHHHHhcccCceeeecCccccccccccccccccccccccccccccccccccccce
Confidence 99999999999999999998766 45542 00000 000 0 0135
Q ss_pred CCCCcccccccCCCCeEEEeeeccCCCcccC---------CCC--CCCCCccccccccccccccccccCCCcCCChHHHH
Q psy945 185 SNEPVAKEHFDFFPNREVVGYGFNGEPGYID---------NPM--FPYPSIRFKAITKELEPLKQKEKGDWKNLTLEEKK 253 (344)
Q Consensus 185 ~~eG~~~~~~~~ig~r~~VG~G~rt~p~y~d---------~~d--~pLpd~rf~~~~~~l~~L~ekekgdWk~Ls~eEk~ 253 (344)
.+|| +++..|+.+++|.|.||++..+. ... ++++|..++|+|+.++.+++. ++
T Consensus 253 lEGG----Dvl~~G~~llvg~s~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~------------~v 316 (423)
T 1jdw_A 253 FDAA----DFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPG------------IV 316 (423)
T ss_dssp BCGG----GEEEETTEEEECCCSSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETT------------EE
T ss_pred eecc----eeEEeCCEEEEEecccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCC------------eE
Confidence 6666 44456888899999999987762 111 567788899999999999965 45
Q ss_pred hhchhhccc-------cccCCcCCCcchhh----------HHHHHHHHHH-HH-------HHHHHHHHHhccCCCCCCCC
Q psy945 254 TLYRASFAQ-------TFVEMNAPTGEWKG----------AFGIAFMVVT-VS-------LLTYVLMYKVGIFPEKAETL 308 (344)
Q Consensus 254 alY~~aF~~-------~~pe~~~~~~e~k~----------vfg~~~v~ig-~~-------~~~~~~~r~~~~~~p~P~tl 308 (344)
.+|+..+.. ...+.+..+.+... .+++|++.++ -. -.....++.. |+.+++.++
T Consensus 317 lv~~~~~~~~~~~L~~~~~~iI~~p~~~~~~~~~~~~s~~~~~~N~L~inpg~VI~~~~~~~~~~~L~~~-G~~Vi~v~~ 395 (423)
T 1jdw_A 317 LSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKL-GITTIKVNI 395 (423)
T ss_dssp EECTTSCBTTHHHHHHTTCEEECCCCCCCCTTSCCSSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEEECC
T ss_pred EEecchhHHHHHHHHhCCCEEEECCCchhccccccccccccceeeEEEECCCEEEEeCCCHHHHHHHHHC-CCEEEEecH
Confidence 556555432 12222221111111 2688877665 21 2224455777 788888888
Q ss_pred cHHH
Q psy945 309 SEEH 312 (344)
Q Consensus 309 seew 312 (344)
+|..
T Consensus 396 ~el~ 399 (423)
T 1jdw_A 396 RNAN 399 (423)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 11
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A 2aaf_A*
Probab=99.70 E-value=1.8e-18 Score=172.60 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=115.8
Q ss_pred ccChHHHHHHHHHHHHHHHHCCCeEEEeCCC-------------------------------------------------
Q psy945 96 KVGIDEARRQHESFVALLRDLGLDVIELPPD------------------------------------------------- 126 (344)
Q Consensus 96 ~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~------------------------------------------------- 126 (344)
.++.++|++||++|+++||++||+|+++++.
T Consensus 45 ~~~~~~A~~Ehd~f~~~Lr~~GV~V~~l~~ll~e~l~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 124 (418)
T 2a9g_A 45 VIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLI 124 (418)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTTCEEEEHHHHHHHHHTSHHHHHHHHHHHSSTTTTCTTTHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEchHHHHHHhcCHHHHHHHHHHHhhhcccchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5799999999999999999999999999863
Q ss_pred -------------------------------CCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhccc---
Q psy945 127 -------------------------------EDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPK--- 172 (344)
Q Consensus 127 -------------------------------~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l~--- 172 (344)
+.+||+||+||++++++++++++||+.++||+|...++ .+++.-
T Consensus 125 ~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~lPd~vF~rD~~~vi~~~vii~~m~~~~Rr~E~~~~~--~i~~~~~~f 202 (418)
T 2a9g_A 125 GGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTT--AIYKFHPEF 202 (418)
T ss_dssp HCBCGGGSCCCHHHHHHHHHHHHTCCCCCSBCCCGGGGCHHHHEEECSSEEEECCCSSGGGTTHHHHHH--HHHHHSTTT
T ss_pred cCCCHHHccccccchhHHHhhhccCCcccccCCCCCeEecCCcEEEECCeEEEeCCCChHhcccHHHHH--HHHHhChhh
Confidence 56999999999999999999999999999999999876 565410
Q ss_pred -cccc---c----cccccccCCCCcccccccCCCCe-EEEeeeccCCCcccC--------C----CC--CCCCCcc-ccc
Q psy945 173 -SLAA---S----YSAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYID--------N----PM--FPYPSIR-FKA 228 (344)
Q Consensus 173 -~~~i---~----~~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d--------~----~d--~pLpd~r-f~~ 228 (344)
..++ . ....+...+|| +++.+|+. ++||.|.||++..+. . +. +++|..+ ++|
T Consensus 203 ~~~~~~~~~~~p~~~~~~~~lEGG----Dvl~~g~~~llvG~s~RTn~~~ie~l~~~l~~~g~~~~V~~l~~~~~~~~~H 278 (418)
T 2a9g_A 203 ANAEFEIWYGDPDKDHGSSTLEGG----DVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMH 278 (418)
T ss_dssp TTCCCEEEEECTTSCCTTCCCCGG----GEECCSSSEEEEEESSSSCHHHHHHHHHHHHHTTSCSEEEEEECCCCSSCCC
T ss_pred hccCCcEEeccccCcCCCCcEecc----eEEEECCceEEEEcCCcCCHHHHHHHHHHhcCCCCccEEEEEecCCCCCCcC
Confidence 1122 1 11234556666 66666765 699999999988772 1 11 4566666 899
Q ss_pred cccccccccccccCCCcCCChHHHHhhchhhcc
Q psy945 229 ITKELEPLKQKEKGDWKNLTLEEKKTLYRASFA 261 (344)
Q Consensus 229 ~~~~l~~L~ekekgdWk~Ls~eEk~alY~~aF~ 261 (344)
+|+.++.+++. +..+|+..++
T Consensus 279 LDt~~~~l~~~------------~~~~~~~~~~ 299 (418)
T 2a9g_A 279 LDTVFSFCDRD------------LVTVFPEVVK 299 (418)
T ss_dssp HHHHEEEEETT------------EEEECHHHHT
T ss_pred hhheeEecCCC------------EEEEECCccC
Confidence 99999999954 6777777764
No 12
>4e4j_A Arginine deiminase; L-arginine, L-citrulline, NH3, hydrolase; 2.30A {Mycoplasma penetrans}
Probab=99.64 E-value=8.4e-17 Score=161.11 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=115.0
Q ss_pred ccccChHHHHHHHHHHHHHHHHCCCeEEEeCC------------------------------------------------
Q psy945 94 MYKVGIDEARRQHESFVALLRDLGLDVIELPP------------------------------------------------ 125 (344)
Q Consensus 94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~------------------------------------------------ 125 (344)
-+.++.++|++||+.|+++||++||+|+.++.
T Consensus 71 ddi~~~~~A~~EHd~f~~~Lr~~GveV~~l~dll~e~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 150 (433)
T 4e4j_A 71 SAVLKADTAIEEHKGFVKILQNNGIKVIQLCDLVAETYELCSKEVRNSFIEQYLDEALPVLKKEIRPVVKDYLLSFPTVQ 150 (433)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTTCEEEEHHHHHHHHHHHSCHHHHHHHHHHHHHHCSSCCCTTTHHHHHHHHHTSCHHH
T ss_pred ccCcCHHHHHHHHHHHHHHHHHCCCEEEEhHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHcCChHH
Confidence 34789999999999999999999999998741
Q ss_pred -----------------------CCCCCCceecCCceEEECCeEEEeCCCCccCcChhhhhHHHHhhcc-----cccccc
Q psy945 126 -----------------------DEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKP-----KSLAAS 177 (344)
Q Consensus 126 -----------------------~~~~PD~VF~~D~a~v~~~~avi~r~~~~~Rr~E~~~~~t~~~~~l-----~~~~i~ 177 (344)
.+.+||++|+||+++++++++++++|+.+.||+|...+. .+++. +...+.
T Consensus 151 l~~~~~~G~~~~e~~~~~~~~~~~~plPN~vFtRD~~~~i~~gvii~~m~~~~Rr~E~~~~~--~i~~~~~~~~~~~~~~ 228 (433)
T 4e4j_A 151 MVRKMMSGILANELNIKQDNPLIIDGMPNLYFTRDPFASMGNGVSINCMKYPTRKREVIFSR--FVFTNNPKYKNTPRYF 228 (433)
T ss_dssp HHHHHHHCEEGGGGTCCCSSSEEECCCGGGGCTTSSEEEEBTEEEECCCSSHHHHTTHHHHH--HHHHHCTTTTTCCEEE
T ss_pred HHHHHHcCcchhhhccccCCccccCCCcCeeecCCCeeEEcCeEEEcCCCChHHcCcHHHHH--HHHHcChhhcCCceEE
Confidence 145899999999999999999999999999999998765 55552 111111
Q ss_pred -cccccccCCCCcccccccCCCCe-EEEeeeccCCCcccCCC----------C------CCCC-Cccccccccccccccc
Q psy945 178 -YSAASAHSNEPVAKEHFDFFPNR-EVVGYGFNGEPGYIDNP----------M------FPYP-SIRFKAITKELEPLKQ 238 (344)
Q Consensus 178 -~~~~~~~~~eG~~~~~~~~ig~r-~~VG~G~rt~p~y~d~~----------d------~pLp-d~rf~~~~~~l~~L~e 238 (344)
....+++.+|| |++.+++. .++|+|.||++..++.. . .++| +..++|+|++++.|++
T Consensus 229 ~~~~~~~~lEGG----Dvl~l~~~~l~iG~s~RTn~~gie~La~~L~~~~~~~~~~v~~~~~~~~~~~mHLDt~ft~ld~ 304 (433)
T 4e4j_A 229 DIVGNNGTIEGG----DIFIYNSKTLVIGNSERTNFAAIESVAKNIQANKDCTFERIVVINVPPMPNLMHLDTWLTMLDY 304 (433)
T ss_dssp CSSSSCSCCCGG----GEEECSSSEEEEEESSSCCHHHHHHHHHHHHTCSSCCCCEEEEEECCCCTTCCSHHHHEEECSS
T ss_pred eccCCCceEecc----eEEEECCCEEEEEecccChHHHHHHHHHHHhhcCceeEEEEEeecccCCccceecCceEEEeCC
Confidence 11245677787 55566755 58899999999987311 1 1233 4568999999999996
Q ss_pred cccCCCcCCChHHHHhhchhhccc
Q psy945 239 KEKGDWKNLTLEEKKTLYRASFAQ 262 (344)
Q Consensus 239 kekgdWk~Ls~eEk~alY~~aF~~ 262 (344)
. +..+|+..|+.
T Consensus 305 d------------~~li~p~~~~~ 316 (433)
T 4e4j_A 305 D------------KFLYSPNMMNV 316 (433)
T ss_dssp S------------EEEECTTSBSE
T ss_pred C------------eEEEchhhcCc
Confidence 4 57788887763
No 13
>2ewo_A Putative agmatine deiminase; Q8DW17, SMR6, X-RAY, structural genomics, PSI, protein structure initiative; 2.90A {Streptococcus mutans} SCOP: d.126.1.6
Probab=69.26 E-value=7.5 Score=38.04 Aligned_cols=70 Identities=6% Similarity=-0.105 Sum_probs=44.1
Q ss_pred CCceecCCceEEE---CCe---EEEeCCCCc---------cCcChhhhhHHHHhhccccccccccc-ccccCCCCccccc
Q psy945 130 PESVFIEDTAVIV---NGI---VLITKPGNT---------QRHKEVAVSATRALIKPKSLAASYSA-ASAHSNEPVAKEH 193 (344)
Q Consensus 130 PD~VF~~D~a~v~---~~~---avi~r~~~~---------~Rr~E~~~~~t~~~~~l~~~~i~~~~-~~~~~~eG~~~~~ 193 (344)
.|.+|+||.+-++ +++ ++-.+|... .|+.|..... .+++ ..++.... .+...+||+++.+
T Consensus 93 ~dD~W~RD~Gp~~v~~~~g~~~~vdf~FN~WG~~~~g~~~~~~~D~~v~~--~~~~--~~g~~~~~~~~~vlEGGsi~~d 168 (377)
T 2ewo_A 93 NDDAWIRDCGPTFLVNDKGDLRAVDWEFNAWGGLVDGLYFPWDQDALVAR--KVCE--IEGVDSYKTKDFVLEGGSIHVD 168 (377)
T ss_dssp CSSCCTTTSSCEEEECSSSCEEEEEEECCTTTTTTTCSSSCCTTHHHHHH--HHHH--TTTCCEEEEEEEECCGGGEEEE
T ss_pred CCCEecccccceEEEcCCCCEEEEEeecccccccccccccCccchhHHHH--HHHH--HcCCCeEecCCeEEcCCceEEC
Confidence 6899999999776 433 777787552 2777776644 4554 33343333 3456778855554
Q ss_pred ccCCCCeEEEeee
Q psy945 194 FDFFPNREVVGYG 206 (344)
Q Consensus 194 ~~~ig~r~~VG~G 206 (344)
= .++++++-+
T Consensus 169 G---~GTlltTe~ 178 (377)
T 2ewo_A 169 G---EGTVLVTEM 178 (377)
T ss_dssp T---TTEEEEEHH
T ss_pred C---CceEEEEcc
Confidence 2 357788876
No 14
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=42.69 E-value=61 Score=31.72 Aligned_cols=121 Identities=4% Similarity=-0.075 Sum_probs=71.2
Q ss_pred CCCchhhhhhheeeeeeeeEEeeccc---ccChHHHHHHHHHHHHHHHHCCCeEEEe-CCCC----------C------C
Q psy945 70 TGEWKGAFGIAFMVVTVSLLTYVLMY---KVGIDEARRQHESFVALLRDLGLDVIEL-PPDE----------D------L 129 (344)
Q Consensus 70 ~~ewk~~~~~~~~~~~vs~lin~~M~---~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L-~~~~----------~------~ 129 (344)
-+||-..-|+.|.+ |.-. +...+.|++.|.++++++.+.- .|.++ ++.. + -
T Consensus 18 PaEweph~~~wm~w--------P~~~~~w~~~~~~~~~~~~~ia~aIa~~e-~V~i~v~~~~~~~a~~~l~~~V~~~~~~ 88 (389)
T 2jer_A 18 PGEFEPQEKVWMIW--------PERPDNWRDGGKPVQEAFTNVAKAISQFT-PMNVVVSQQQFQNCRRQLPPEITVYEMS 88 (389)
T ss_dssp CCTTSCEEEEEEEC--------CCCTTTSGGGGHHHHHHHHHHHHHHHTTS-CEEEEECTTTHHHHHHHSCTTSEEEECC
T ss_pred CCCccchheEEEec--------CCCccchhhhHHHHHHHHHHHHHHHhCCC-cEEEEECHHHHHHHHHHccCCcEEEEcC
Confidence 46888775544433 3322 3347889999999999987643 44443 3321 0 1
Q ss_pred CCceecCCceEEE---CC---eEEEeCCCCc---------cCcChhhhhHHHHhhccccccccccc-ccccCCCCccccc
Q psy945 130 PESVFIEDTAVIV---NG---IVLITKPGNT---------QRHKEVAVSATRALIKPKSLAASYSA-ASAHSNEPVAKEH 193 (344)
Q Consensus 130 PD~VF~~D~a~v~---~~---~avi~r~~~~---------~Rr~E~~~~~t~~~~~l~~~~i~~~~-~~~~~~eG~~~~~ 193 (344)
.|.+|+||.+-++ ++ .++-.+|... .+..+..... .+.+ ..++.... .+...+||+++.+
T Consensus 89 ~~D~W~RD~GP~~v~~~~g~~~~vdf~FN~WGg~~~g~~~~~~~D~~v~~--~~~~--~~g~~~~~~~~~vlEGGsi~~D 164 (389)
T 2jer_A 89 NNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQ--KICE--IEHVDSYRTDDFVLEGGSFHVD 164 (389)
T ss_dssp CSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHH--HHHH--HHTCCEEEEEEEECCGGGEEEC
T ss_pred CCCEecccccceEEecCCCCEEEEEeecccccccccccccCccchHHHHH--HHHH--HcCCCeEecCCeEEccCcEEEC
Confidence 3899999998776 43 3777777553 2566665533 4444 23333332 3455777754444
Q ss_pred ccCCCCeEEEeee
Q psy945 194 FDFFPNREVVGYG 206 (344)
Q Consensus 194 ~~~ig~r~~VG~G 206 (344)
= .++++++-+
T Consensus 165 G---~GTlltTe~ 174 (389)
T 2jer_A 165 G---QGTVLTTEM 174 (389)
T ss_dssp S---SSEEEEEHH
T ss_pred C---CceEEEEee
Confidence 2 357788866
No 15
>3zxa_C Capsid protein; ssRNA virus, icosahedral virus; 3.20A {Turnip crinkle virus} PDB: 3zx9_A 3zx8_A
Probab=39.37 E-value=6.3 Score=38.31 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=0.0
Q ss_pred hccccCCCccchhhccCCccccCHHHHHHHHHH
Q psy945 25 AASAHSNEPPLKQKEKGDWKNLTLEEKKTLYRA 57 (344)
Q Consensus 25 ~~~~~~~~~~l~~ke~~~w~~l~~~ek~~lyr~ 57 (344)
.+.+.|.+.|+|-+-|| |++||...|+++=.+
T Consensus 9 ~~a~~g~~wAiKl~~~G-w~sLs~~QK~~ar~~ 40 (347)
T 3zxa_C 9 KFASDGAQWAIKWQKKG-WSTLTSRQKQTARAA 40 (347)
T ss_dssp ---------------------------------
T ss_pred HHHhcCchhhhhhhhCc-hhhcCHHHHHHHHHh
Confidence 35677999999999999 999999999977554
No 16
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=33.35 E-value=32 Score=24.41 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=15.6
Q ss_pred CCccccCHHHHHHHHHHhhhhhHHHh
Q psy945 41 GDWKNLTLEEKKTLYRASFAQTFVEM 66 (344)
Q Consensus 41 ~~w~~l~~~ek~~lyr~~f~~t~~e~ 66 (344)
.-|++||.+||. -|.-...+--.+-
T Consensus 39 ~~Wk~ls~~eK~-~y~~~A~~~k~~y 63 (71)
T 4a3n_A 39 KSWKALTLAEKR-PFVEEAERLRVQH 63 (71)
T ss_dssp HHHHHSCHHHHH-HHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHH-HHHHHHHHHHHHH
Confidence 359999999998 4544333333333
No 17
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=31.77 E-value=31 Score=24.95 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=18.6
Q ss_pred CccccCHHHHHHHHHHhhhhhHHHhhccCCCc
Q psy945 42 DWKNLTLEEKKTLYRASFAQTFVEMNASTGEW 73 (344)
Q Consensus 42 ~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ew 73 (344)
-|++||.+||. -|.-...+--.+...-..+|
T Consensus 42 ~Wk~ls~~eK~-~y~~~A~~~k~~y~~~~~~Y 72 (76)
T 1hry_A 42 QWKMLTEAEKW-PFFQEAQKLQAMHREKYPNY 72 (76)
T ss_dssp HHHTCCHHHHH-HHHHHHHHHHHHHHHHSSSC
T ss_pred HHHhCCHHHHH-HHHHHHHHHHHHHHHHCCCC
Confidence 59999999987 56544444433333333333
No 18
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=30.50 E-value=39 Score=24.88 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=21.4
Q ss_pred CccccCHHHHHHHHHHhhhhhHHHhhccCCCch
Q psy945 42 DWKNLTLEEKKTLYRASFAQTFVEMNASTGEWK 74 (344)
Q Consensus 42 ~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ewk 74 (344)
-|++||.+||. -|.-...+--.+.+.-..+||
T Consensus 45 ~Wk~ls~~eK~-~y~~~A~~~k~~y~~~~~~yk 76 (82)
T 1wz6_A 45 WWAVLDPKEKQ-KYTDMAKEYKDAFMKANPGYR 76 (82)
T ss_dssp HHHTCCHHHHH-HHHHHHHHHHHHHCCSCSSCC
T ss_pred HHhhCCHHHHH-HHHHHHHHHHHHHHHHhHHhh
Confidence 59999999987 665555555555555555554
No 19
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=25.05 E-value=41 Score=30.18 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=22.5
Q ss_pred hHHHHHHH--HHHHHHHHHCCCeEEE-eCCCCC
Q psy945 99 IDEARRQH--ESFVALLRDLGLDVIE-LPPDED 128 (344)
Q Consensus 99 ~d~A~~Qh--~~lv~~Lr~~Gv~V~~-L~~~~~ 128 (344)
...|++|| .+|.+.|++.|++|.+ +.|..|
T Consensus 57 mAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAG 89 (203)
T 2fsv_C 57 MAVAQAQHALREMADVLKKEGVEVSYAIHPVAG 89 (203)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCS
T ss_pred HhHHHHHHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 45566666 7899999999999976 556443
No 20
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=24.64 E-value=42 Score=30.19 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=22.9
Q ss_pred ChHHHHHHH--HHHHHHHHHCCCeEEE-eCCCCC
Q psy945 98 GIDEARRQH--ESFVALLRDLGLDVIE-LPPDED 128 (344)
Q Consensus 98 D~d~A~~Qh--~~lv~~Lr~~Gv~V~~-L~~~~~ 128 (344)
....|++|| .+|++.|++.|++|.+ +.|..|
T Consensus 55 GmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAG 88 (207)
T 1djl_A 55 GLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAG 88 (207)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCS
T ss_pred hHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCC
Confidence 345566666 7899999999999976 556443
No 21
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=23.90 E-value=74 Score=28.91 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHCCCeEEEeCCCCC
Q psy945 99 IDEARRQHESFVALLRDLGLDVIELPPDED 128 (344)
Q Consensus 99 ~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~~ 128 (344)
.+-....=..+.++|++.|++|+.+++.+.
T Consensus 27 ~~vsl~s~~~v~~al~~~g~~v~~i~~~~~ 56 (317)
T 4eg0_A 27 REVSLTSGRLVLQGLRDAGIDAHPFDPAER 56 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECTTTS
T ss_pred ceeeHHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 444455557889999999999999996554
No 22
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=23.54 E-value=66 Score=30.44 Aligned_cols=31 Identities=19% Similarity=0.397 Sum_probs=24.9
Q ss_pred HHHHHHHHHHCCCeEEEeCCCCC-----CCCceecC
Q psy945 106 HESFVALLRDLGLDVIELPPDED-----LPESVFIE 136 (344)
Q Consensus 106 h~~lv~~Lr~~Gv~V~~L~~~~~-----~PD~VF~~ 136 (344)
++.|++++++.|++|+.+++... -+|.||.+
T Consensus 35 ~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~ 70 (346)
T 2q7d_A 35 FQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHK 70 (346)
T ss_dssp HHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEEC
T ss_pred HHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeC
Confidence 67899999999999999997643 25666665
No 23
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=23.41 E-value=55 Score=24.34 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=18.3
Q ss_pred CccccCHHHHHHHHHHhhhhhHHHhhccCCCc
Q psy945 42 DWKNLTLEEKKTLYRASFAQTFVEMNASTGEW 73 (344)
Q Consensus 42 ~w~~l~~~ek~~lyr~~f~~t~~e~~~~~~ew 73 (344)
-|++||.+||. -|.-...+--.+...-..+|
T Consensus 42 ~Wk~ls~eeK~-~y~~~A~~~k~~y~~~~~~Y 72 (85)
T 1j46_A 42 QWKMLTEAEKW-PFFQEAQKLQAMHREKYPNY 72 (85)
T ss_dssp HHTTSCHHHHH-HHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCHHHHH-HHHHHHHHHHHHHHHHCccc
Confidence 59999999987 55544444433333333333
No 24
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=22.82 E-value=58 Score=23.75 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=14.3
Q ss_pred CCccccCHHHHHHHHHHhhhhh
Q psy945 41 GDWKNLTLEEKKTLYRASFAQT 62 (344)
Q Consensus 41 ~~w~~l~~~ek~~lyr~~f~~t 62 (344)
.-|++||.+||. -|.-...+-
T Consensus 39 ~~Wk~ls~eeK~-~y~~~A~~~ 59 (80)
T 1gt0_D 39 AEWKLLSETEKR-PFIDEAKRL 59 (80)
T ss_dssp HHHTTSCHHHHH-HHHHHHHHH
T ss_pred HHHHhCCHHHHH-HHHHHHHHH
Confidence 359999999987 554444333
No 25
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=22.45 E-value=61 Score=31.96 Aligned_cols=25 Identities=40% Similarity=0.527 Sum_probs=21.9
Q ss_pred ccchhhccCCccccCHHHHHHHHHH
Q psy945 33 PPLKQKEKGDWKNLTLEEKKTLYRA 57 (344)
Q Consensus 33 ~~l~~ke~~~w~~l~~~ek~~lyr~ 57 (344)
.-|.|.|||+|-+-.-+=|++-|+.
T Consensus 5 ~~l~~le~g~wps~v~~~~~~~~~~ 29 (418)
T 3mm5_A 5 PLLDELEKGPWPSFVKEIKKTAELM 29 (418)
T ss_dssp HHHHGGGSSSSCCHHHHHHHHHHHH
T ss_pred cchhHhhcCCCchHHHHHHHHhhhh
Confidence 3589999999999999999998864
No 26
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=22.24 E-value=53 Score=24.58 Aligned_cols=16 Identities=31% Similarity=0.829 Sum_probs=12.2
Q ss_pred CccccCHHHHHHHHHHh
Q psy945 42 DWKNLTLEEKKTLYRAS 58 (344)
Q Consensus 42 ~w~~l~~~ek~~lyr~~ 58 (344)
-|++||.+||. -|.-.
T Consensus 55 ~Wk~ls~eeK~-~y~~~ 70 (87)
T 2e6o_A 55 RWKKMKNEERR-MYTLE 70 (87)
T ss_dssp HHHHSCHHHHH-HHHHH
T ss_pred HHhhCCHHHHH-HHHHH
Confidence 59999999987 45433
No 27
>1opo_A Coat protein; plant virus, carmovirus, virus/viral protein, X-RAY diffraction, tomato bushy stunt virus, icosahedral virus; 3.20A {Carnation mottle virus} SCOP: b.121.4.7
Probab=21.97 E-value=19 Score=34.92 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=0.0
Q ss_pred hccccCCCccchhhccCCccccCHHHHHHHHH
Q psy945 25 AASAHSNEPPLKQKEKGDWKNLTLEEKKTLYR 56 (344)
Q Consensus 25 ~~~~~~~~~~l~~ke~~~w~~l~~~ek~~lyr 56 (344)
.+.+.|.|.|+|-+.|| |+.||...|++.=+
T Consensus 16 ~~a~~g~~wA~kl~~~G-w~sLs~~Qk~~ar~ 46 (348)
T 1opo_A 16 TLAQKGDKLAVKLVTRG-WASLSTNQKRRAEM 46 (348)
T ss_dssp --------------------------------
T ss_pred HHHhcccHHHHHHHhcc-hhhcCHHHHHHHHH
Confidence 45678999999999977 99999999997655
No 28
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=20.75 E-value=1.2e+02 Score=25.29 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=29.3
Q ss_pred ccccChHHHHHHHHHHHHHHHHCCCeEEEeCCCC
Q psy945 94 MYKVGIDEARRQHESFVALLRDLGLDVIELPPDE 127 (344)
Q Consensus 94 M~~vD~d~A~~Qh~~lv~~Lr~~Gv~V~~L~~~~ 127 (344)
...++.+...+..+.+++.+++.|.+|+++.+.+
T Consensus 90 ~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~~~p 123 (240)
T 3mil_A 90 PQSVPLPEFIDNIRQMVSLMKSYHIRPIIIGPGL 123 (240)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 3456788999999999999999999999998654
No 29
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=20.71 E-value=63 Score=23.39 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=13.4
Q ss_pred cCCccccCHHHHHHHHHHhh
Q psy945 40 KGDWKNLTLEEKKTLYRASF 59 (344)
Q Consensus 40 ~~~w~~l~~~ek~~lyr~~f 59 (344)
..-|++||.+||. -|.-..
T Consensus 38 g~~Wk~ls~~eK~-~y~~~A 56 (79)
T 3u2b_C 38 GKRWKLLKDSDKI-PFIQEA 56 (79)
T ss_dssp HHHHHHSCHHHHH-HHHHHH
T ss_pred HHHHHhCCHHHHH-HHHHHH
Confidence 3469999999998 444333
No 30
>1r45_A Exoenzyme C3, mono-ADP-ribosyltransferase C3; binary toxin, C3 exoenzyme; 1.57A {Clostridium phage c-st} SCOP: d.166.1.1 PDB: 1r4b_A
Probab=20.67 E-value=48 Score=28.98 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=19.9
Q ss_pred CCccccCHHHHHHHHHHhhhhhHHHhhc
Q psy945 41 GDWKNLTLEEKKTLYRASFAQTFVEMNA 68 (344)
Q Consensus 41 ~~w~~l~~~ek~~lyr~~f~~t~~e~~~ 68 (344)
..|+ ||.+||.||+.++-+ +..+|.
T Consensus 24 ~~w~-Lt~~e~~Ai~~Yt~~--y~~IN~ 48 (204)
T 1r45_A 24 KKYG-LSKPEQEAIKFYTRD--ASKING 48 (204)
T ss_dssp TTTC-CCHHHHHHHHHHHHC--THHHHH
T ss_pred hccC-CCHHHHHHHHHHHHh--HHHHHH
Confidence 4688 999999999998753 666664
Done!