RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy945
(344 letters)
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport,
complex IV, proton pumps, membrane prote; HET: TPO HEA
CHD PEK PGV DMU; 1.95A {Bos taurus}
Length = 169
Score = 189 bits (482), Expect = 4e-60
Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 2/147 (1%)
Query: 199 NREVVGYGFNGEPGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYR 257
+ VV P Y+D +P P + K ++ + LK+KEK W +L+++EK LYR
Sbjct: 24 HGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYR 83
Query: 258 ASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEML 317
F ++F EMN T EWK G A + + L + K ++ T EE +
Sbjct: 84 LKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWE-KHYVYGPIPHTFEEEWVAKQT 142
Query: 318 QKMIDLRWNPITGTASKWDYEKNDWKK 344
++M+D++ PI G ++KWDY+KN+WKK
Sbjct: 143 KRMLDMKVAPIQGFSAKWDYDKNEWKK 169
Score = 85.8 bits (212), Expect = 3e-20
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 35 LKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM 94
LK+KEK W +L+++EK LYR F ++F EMN ST EWK G A + + L +
Sbjct: 62 LKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWE 121
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME
TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus}
SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D*
1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D*
2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D*
3ag1_D* 3ag2_D* ...
Length = 147
Score = 178 bits (452), Expect = 8e-56
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Query: 209 GEPGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEM 267
P Y+D +P P + K ++ + LK+KEK W +L+++EK LYR F ++F EM
Sbjct: 12 ALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEM 71
Query: 268 NAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
N T EWK G A + + L + K ++ T EE + ++M+D++ P
Sbjct: 72 NRSTNEWKTVVGAAMFFIGFTALLLIWE-KHYVYGPIPHTFEEEWVAKQTKRMLDMKVAP 130
Query: 328 ITGTASKWDYEKNDWKK 344
I G ++KWDY+KN+WKK
Sbjct: 131 IQGFSAKWDYDKNEWKK 147
Score = 85.3 bits (211), Expect = 2e-20
Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 35 LKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM 94
LK+KEK W +L+++EK LYR F ++F EMN ST EWK G A + + L +
Sbjct: 40 LKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWE 99
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric
oxide synthase regulation, acetylation, metal-binding,
zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A*
3p8e_A* 3p8p_A*
Length = 308
Score = 67.1 bits (163), Expect = 8e-13
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 96 KVGIDEARRQHESFVALLR-DLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPG-N 153
+V + A RQH+ +V +L LGL V+ELP DE LP+ VF+ED AV+ LIT+PG
Sbjct: 60 EVDVARAERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP 119
Query: 154 TQRHKEVAVSA 164
++R + +
Sbjct: 120 SRRKEVDMMKE 130
>2ci1_A NG, NG-dimethylarginine dimethylaminohydrolase 1; NOS regulation,
S-nitrosylation, zinc, MMA, ADMA, acetylation,
metal-binding; HET: KOR K1R CIT; 1.08A {Bos taurus} PDB:
2c6z_A* 2ci3_A 2ci4_A 2ci5_A* 2ci6_A 2ci7_A 2jaj_A*
2jai_A*
Length = 275
Score = 66.6 bits (162), Expect = 9e-13
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 96 KVGIDEARRQHESFVALLR-DLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPG-N 153
+V A RQH+ +V +L LGL V++LP DE LP+ VF+ED AV+ LIT+PG
Sbjct: 30 EVDFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVXEETALITRPGAP 89
Query: 154 TQRHKEVAVSA 164
++R + +
Sbjct: 90 SRRKEADMMKE 100
>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide
synthase inhibitor; HET: CIR; 1.8A {Pseudomonas
aeruginosa} SCOP: d.126.1.3 PDB: 3rhy_A 3bpb_A*
Length = 255
Score = 64.7 bits (157), Expect = 3e-12
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 96 KVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQ 155
K +A QH +++ L+ +D+ LPPDE P+SVF+ED + + +IT+PG
Sbjct: 26 KPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRCAIITRPGAES 85
Query: 156 RHKE 159
R E
Sbjct: 86 RRGE 89
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 2e-11
Identities = 62/394 (15%), Positives = 113/394 (28%), Gaps = 142/394 (36%)
Query: 3 SRVAVSATRALIKPKSLAASYSAASAHSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQT 62
+++ L+K K L +Y A + P K+ L+RA
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA------------LFRA----- 148
Query: 63 FVEMNASTGEWK-----GAFGIAFMVVTVSLLTYVLMYKVGIDEARRQHESFVALLRDL- 116
G + G G Y +E R ++++ L+ DL
Sbjct: 149 -----VGEGNAQLVAIFGGQGNT--------DDYF-------EELRDLYQTYHVLVGDLI 188
Query: 117 -----------------------GLDVIE-LPPDEDLPESVFIEDTAVIVNGIVLI---- 148
GL+++E L + P+ ++ + I +I
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 149 ---------TKPGNTQRHKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDF--- 196
PG + + + A ++ L+ ++A + S S + A F
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT-VLFFIG 307
Query: 197 ------FPNREV--------VGYGFNGEPGYIDNPMFPYPSIRFKAITKE-LEPLKQKEK 241
+PN + + G P PM SI +T+E ++ K
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENN-EGVPS----PML---SIS--NLTQEQVQDYVNKT- 356
Query: 242 GDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVT---VSLLTYVLMY-K 297
N L K + + N VV+ SL L K
Sbjct: 357 ----NSHLPAGKQVEISLV-------NGAK-----NL-----VVSGPPQSLYGLNLTLRK 395
Query: 298 VGIFPEKAETLSEEHRQEMLQK--MIDLRWNPIT 329
KA + ++ R ++ R+ P+
Sbjct: 396 A-----KAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Score = 43.1 bits (101), Expect = 1e-04
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 46/143 (32%)
Query: 186 NEPVAKEHFD----FFPNREVVGYGFNGEPGYIDNP-----MFP----------YPSIRF 226
A++ ++ F + YGF+ I+NP F Y ++ F
Sbjct: 1638 TSKAAQDVWNRADNHFKDT----YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 227 KAITK---ELEPLKQKEKGDWKNLTLE-EKKTLYRASFAQTFVEMNAPTGEWKGAFGIAF 282
+ I + E + ++ + T EK L F Q P A
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ-------P----------A- 1735
Query: 283 MVVTVSLLTYVLMYKVGIFPEKA 305
+ + + + G+ P A
Sbjct: 1736 -LTLMEKAAFEDLKSKGLIPADA 1757
Score = 39.6 bits (92), Expect = 0.001
Identities = 54/336 (16%), Positives = 93/336 (27%), Gaps = 126/336 (37%)
Query: 102 ARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEV- 160
A + E F +L + D++ P + E + + + +P + +V
Sbjct: 30 ASQLQEQFNKILPE---PTEGFAADDE-PTTP-AELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 161 ------------------AVSAT------RALIKPKSLAASYSAASAHSNEPVAKEH--- 193
A++A L+K K L +Y A + P K+
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 194 -FDFFPNREVVGYG-FNGEPGYIDNPMFP--------YPSIR---FKAITKELEPL---- 236
F F G+ G D+ F Y + K + L L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQ-GNTDDY-FEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 237 ----KQKEKG----DWKNLTLEEKK--TLYRAS------------FAQTFV--------- 265
K +G +W L Y S A V
Sbjct: 203 LDAEKVFTQGLNILEW--LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260
Query: 266 -EMNAP----TGEWKG---AFGIA-------FMVVTVSLLTYVLMYKVGI-----FPEKA 305
E+ + TG +G A IA F V +T +++ +G+ +P +
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT--VLFFIGVRCYEAYPNTS 318
Query: 306 ETL-----SEEHRQE----ML----------QKMID 322
S E+ + ML Q ++
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 6e-07
Identities = 56/380 (14%), Positives = 112/380 (29%), Gaps = 119/380 (31%)
Query: 3 SRVAVSATRALIKPKSLAASYSAASAHSNEPPLKQKEKGDWKNLTLEEKKTLYRASFAQT 62
++ ++ TR K + SAA + L LT +E K+L +
Sbjct: 266 CKILLT-TR----FKQVTDFLSAA--TTTHISLDHHSMT----LTPDEVKSL----LLK- 309
Query: 63 FVEMNAST--GEWKGAFGIAFMVVTV---SLLTYVLMYK----VGIDEARRQHESFVALL 113
+++ E +++ S+ + + V D+ ES + +L
Sbjct: 310 YLDCRPQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 114 ---------RDLGLDVIELPPDEDLPESVFI--------EDTAVIVNGIV---LITKPGN 153
L + PP +P + D V+VN + L+ K
Sbjct: 367 EPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 154 TQR------HKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYGF 207
+ E+ V +S+ Y+ ++ + + D Y +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--------QYFY 474
Query: 208 NGEPGYI-----------DNPMFP--YPSIRFKAITKELEPLKQK---------EKGDWK 245
+ +I +F + RF L+QK G
Sbjct: 475 S----HIGHHLKNIEHPERMTLFRMVFLDFRF---------LEQKIRHDSTAWNASGSIL 521
Query: 246 NLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYK------VG 299
N + K Y+ ++ N P E + F+ + ++ K +
Sbjct: 522 NTLQQLKF--YKP-----YICDNDPKYERLVNAILDFL---PKIEENLICSKYTDLLRIA 571
Query: 300 IFPEKAETLSEEHRQEMLQK 319
+ E E H+Q +Q+
Sbjct: 572 LMAEDEAIFEEAHKQ--VQR 589
Score = 45.2 bits (106), Expect = 3e-05
Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 70/257 (27%)
Query: 107 ESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATR 166
++FV + D ++ +D+P+S+ + ++ I++ VS T
Sbjct: 27 DAFV---DNF--DCKDV---QDMPKSIL---SKEEIDHIIMSKDA----------VSGTL 65
Query: 167 ALI-----KPKSLAASYSAASAHSN-----EPVAKEHFDFFPNREVVGYGFNGEPGYIDN 216
L K + + + N P+ E P+ Y + Y DN
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYNDN 123
Query: 217 PMF-PYPSIRFKAITKELEPLKQKEKGDWKNLTLEEK----KTLYRASFAQTF-VEMNAP 270
+F Y R + K + L + KN+ ++ KT ++ V+
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 271 TGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKM---IDLRWNP 327
F I ++ + S E EMLQK+ ID W
Sbjct: 182 -------FKIFWL-------------NLK------NCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 328 ITGTASKWDYEKNDWKK 344
+ +S + +
Sbjct: 216 RSDHSSNIKLRIHSIQA 232
>1s9r_A Arginine deiminase; hydrolase, 5-fold pseudo-symmetric domain, 5-
helix bundle domain, raction intermediate; HET: ARG;
1.60A {Mycoplasma arginini} SCOP: d.126.1.4 PDB: 1lxy_A*
Length = 410
Score = 43.3 bits (101), Expect = 7e-05
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 114 RDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAV 162
DLG++ + +P F D V V I R +E
Sbjct: 138 YDLGIEADHELIVDPMPNLYFTRDPFASVGNGVTIHYMRYKVRQRETLF 186
Score = 30.2 bits (67), Expect = 0.94
Identities = 18/104 (17%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 99 IDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAV---IVNGIVLITKPGNTQ 155
+AR++H+ FVA L+ ++V+E + + E+ + ++ + ++P ++
Sbjct: 51 SHDARKEHKQFVAELKANDINVVE--LIDLVAETYDLASQEAKDKLIEEFLEDSEPVLSE 108
Query: 156 RHKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPN 199
HK V + +A + L A + + +H
Sbjct: 109 EHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVDP 152
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen
III synthase, HMB, lyase; 2.50A {Pseudomonas syringae
PV}
Length = 269
Score = 31.2 bits (71), Expect = 0.40
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 5/35 (14%)
Query: 102 ARRQHESFVALLRDLGLDVIELP-----PDEDLPE 131
+ + +L D G+ LP P P
Sbjct: 22 PAEESAALARVLADAGIFSSSLPLLETEPLPLTPA 56
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2, lyase; 1.65A {Shewanella amazonensis}
Length = 240
Score = 31.1 bits (71), Expect = 0.40
Identities = 3/35 (8%), Positives = 9/35 (25%), Gaps = 5/35 (14%)
Query: 102 ARRQHESFVALLRDLGLDVIELP-----PDEDLPE 131
++ + + L L + + P
Sbjct: 9 PEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQA 43
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph
structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.30A {Thermus
thermophilus} PDB: 1wd7_A 1wcx_A
Length = 261
Score = 30.9 bits (70), Expect = 0.46
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 104 RQHESFVALLRDLGLDVIELP-------PDEDLPE 131
R+ E+F AL LG + P P + +
Sbjct: 17 RRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRD 51
>2a9g_A Arginine deiminase; arginine degradation pathway, catalyti
mechanism, hydrolase; HET: ARG; 2.30A {Pseudomonas
aeruginosa} SCOP: d.126.1.4 PDB: 1rxx_A 2abr_A* 2aci_A
2aaf_A*
Length = 418
Score = 30.9 bits (69), Expect = 0.63
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 99 IDEARRQHESFVALLRDLGLDVIEL 123
+++A+R H FV +R+ G+DV+E+
Sbjct: 48 VNQAKRDHFDFVTKMRERGIDVLEM 72
>3qbg_A Halorhodopsin; membrane protein, ION pump, retinal, membrane; HET:
RET BNG 22B; 1.80A {Natronomonas pharaonis} PDB: 3a7k_A*
3abw_A* 3qbi_A* 3qbk_A* 3qbl_A*
Length = 291
Score = 29.7 bits (66), Expect = 1.3
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 258 ASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLM 295
+ F+ K +V VS+ +Y +
Sbjct: 48 SILLFVFMTRGLDDPRAKLIAVSTILVPVVSIASYTGL 85
Score = 29.0 bits (64), Expect = 2.4
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 57 ASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM 94
+ F+ K +V VS+ +Y +
Sbjct: 48 SILLFVFMTRGLDDPRAKLIAVSTILVPVVSIASYTGL 85
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding,
transcription, transcription regulation; NMR {Thermotoga
maritima}
Length = 72
Score = 27.4 bits (61), Expect = 1.7
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 105 QHESFVALLRDLGLDVIELPPDEDLPES 132
E L G++++E P+E+ +
Sbjct: 44 LIERIHEELEKHGINIVENEPEEEEISA 71
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG,
midwest center for structu genomics, PSI; 1.65A {Vibrio
parahaemolyticus}
Length = 177
Score = 28.7 bits (65), Expect = 1.8
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 299 GIFPEKAETLSEEHRQEMLQKMI 321
L R +++ I
Sbjct: 37 IAHAWGKNMLDYPIRCKLVDAFI 59
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase,
phosphate-binding motif; 2.04A {Escherichia coli} PDB:
3cqi_A 3cqh_A 3cqk_A
Length = 295
Score = 28.9 bits (65), Expect = 2.4
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 94 MYKVGIDE-ARRQHESF---VALLRDLGLDVIELPPDE 127
+GI E A E + + L + LG D +E+ DE
Sbjct: 16 QIPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDE 53
>3qap_A Sensory rhodopsin-2; phototaxis, nphtrii, membrane, transport
protein; HET: RET BOG LFA L2P; 1.90A {Natronomonas
pharaonis} PDB: 1gue_A* 1gu8_A* 1h68_A* 3qdc_A* 2f93_A*
2f95_A* 2ksy_A* 1h2s_A* 1jgj_A*
Length = 239
Score = 28.1 bits (62), Expect = 4.0
Identities = 3/38 (7%), Positives = 10/38 (26%)
Query: 258 ASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLM 295
+ + + ++ + YV+M
Sbjct: 17 VGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVM 54
Score = 28.1 bits (62), Expect = 4.0
Identities = 3/38 (7%), Positives = 11/38 (28%)
Query: 57 ASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM 94
+ + + + ++ + YV+M
Sbjct: 17 VGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVM 54
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET:
RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Length = 261
Score = 28.1 bits (62), Expect = 4.2
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 258 ASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLM 295
+ P G + + +A + S L Y+ M
Sbjct: 17 IGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAM 54
Score = 27.7 bits (61), Expect = 5.1
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 57 ASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM 94
+ G + + +A + S L Y+ M
Sbjct: 17 IGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAM 54
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 27.8 bits (62), Expect = 5.8
Identities = 3/51 (5%), Positives = 10/51 (19%), Gaps = 1/51 (1%)
Query: 215 DNPMFPYPSIRFKAITKELEPLKQKEKGDWKN-LTLEEKKTLYRASFAQTF 264
+ I + + G + E + + +
Sbjct: 244 ELEKRSEQQGGGSPIRHGDARMMKGGPGGARPQFVGEGRYDQSLSFLGEDI 294
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 28.0 bits (63), Expect = 6.1
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 100 DEARRQHESFVALLRDLGLDVIELPPDEDLPESVF 134
E A L LG DV + P+ S
Sbjct: 275 PECAAAARGAAAALAALGHDVNDAYPEALGDRSFL 309
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT
structure initiative; HET: MSE; 1.80A {Pseudomonas
aeruginosa PAO1} SCOP: c.1.15.7
Length = 264
Score = 27.3 bits (60), Expect = 7.0
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 84 VTVSLLTYVLMYKVGIDEARRQ-HESFVALLRDLGLDVIE-----LPPDEDLPE 131
V++SL +Y G D R + SF+ LL G +E D
Sbjct: 8 VSISLSSY------GADLVRSRGQASFLPLLAMAGAQRVELREELFAGPPDTEA 55
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 27.2 bits (61), Expect = 7.6
Identities = 7/56 (12%), Positives = 13/56 (23%), Gaps = 2/56 (3%)
Query: 109 FVALLRDLGLDVIELPPDEDLPESVF--IEDTAVIVNGIVLITKPGNTQRHKEVAV 162
A + L ++ P E V I + + + V
Sbjct: 26 QTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIV 81
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 27.5 bits (61), Expect = 8.1
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 106 HESFVALLRDLGLDVIELPPDED 128
L ++G+ + + P
Sbjct: 36 PPDCAERLAEVGVPHVPVGPSAR 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.383
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,284,571
Number of extensions: 317173
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 56
Length of query: 344
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 250
Effective length of database: 4,077,219
Effective search space: 1019304750
Effective search space used: 1019304750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)