RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy945
(344 letters)
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
{Cow (Bos taurus) [TaxId: 9913]}
Length = 144
Score = 179 bits (457), Expect = 5e-57
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Query: 209 GEPGYIDNPMFPYPSIRF-KAITKELEPLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEM 267
P Y+D +P P + K ++ + LK+KEK W +L+++EK LYR F ++F EM
Sbjct: 9 ALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEM 68
Query: 268 NAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFPEKAETLSEEHRQEMLQKMIDLRWNP 327
N T EWK G A + + L + K ++ T EE + ++M+D++ P
Sbjct: 69 NRSTNEWKTVVGAAMFFIGFTALLLIWE-KHYVYGPIPHTFEEEWVAKQTKRMLDMKVAP 127
Query: 328 ITGTASKWDYEKNDWKK 344
I G ++KWDY+KN+WKK
Sbjct: 128 IQGFSAKWDYDKNEWKK 144
Score = 87.5 bits (217), Expect = 1e-21
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 34 PLKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVL 93
LK+KEK W +L+++EK LYR F ++F EMN ST EWK G A + + L +
Sbjct: 36 ALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIW 95
Query: 94 MYK 96
Sbjct: 96 EKH 98
>d1h70a_ d.126.1.3 (A:) Dimethylarginine dimethylaminohydrolase DDAH
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 255
Score = 54.5 bits (130), Expect = 4e-09
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 89 LTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLI 148
LT + K +A QH +++ L+ +D+ LPPDE P+SVF+ED + + +I
Sbjct: 19 LTSSHLGKPDYAKALEQHNAYIRALQTCDVDITLLPPDERFPDSVFVEDPVLCTSRCAII 78
Query: 149 TKPGNTQRHKE 159
T+PG R E
Sbjct: 79 TRPGAESRRGE 89
>d1s9ra_ d.126.1.4 (A:) Arginine deiminase {Mycoplasma arginini
[TaxId: 2094]}
Length = 409
Score = 35.5 bits (81), Expect = 0.009
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 99 IDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAV---IVNGIVLITKPGNTQ 155
+AR++H+ FVA L+ ++V+EL + + E+ + ++ + ++P ++
Sbjct: 50 SHDARKEHKQFVAELKANDINVVELI--DLVAETYDLASQEAKDKLIEEFLEDSEPVLSE 107
Query: 156 RHKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFP 198
HK V + +A + L A + + +H
Sbjct: 108 EHKVVVRNFLKAKKTSRELVEIMMAGITKYDLGIEADHELIVD 150
>d1bwda_ d.126.1.2 (A:) L-arginine: inosamine-phosphate
amidinotransferase {Streptomyces griseus [TaxId: 1911]}
Length = 348
Score = 34.5 bits (78), Expect = 0.015
Identities = 20/128 (15%), Positives = 31/128 (24%), Gaps = 18/128 (14%)
Query: 99 IDEARRQHESFVALLRDLGLDVIELPP------------DEDLPESVFIEDTAVIVNGIV 146
+ E + A L LG+ V P + D D + V +
Sbjct: 58 LKETEEELHVLAAELTKLGVTVRRPGPRDHSALIKTPDWETDGFHDYCPRDGLLSVGQTI 117
Query: 147 LITKPGNTQRHKEVAVSATRALIKPKSLAASYSAASAHSNEPVAKEHFDFFPNREVVGYG 206
+ T R E K L S + S + P
Sbjct: 118 IETPMALRSRFLESLA------YKDLLLEYFASGSRWLSAPKPRLTDDSYAPQAPAGERL 171
Query: 207 FNGEPGYI 214
+ EP +
Sbjct: 172 TDEEPVFD 179
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 33.6 bits (76), Expect = 0.028
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 99 IDEARRQHESFVALLRDLGLDVIELP 124
+++A+R H FV +R+ G+DV+E+
Sbjct: 43 VNQAKRDHFDFVTKMRERGIDVLEMH 68
Score = 33.2 bits (75), Expect = 0.036
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 89 LTYVLMYKVGIDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLI 148
L L+ V D+ + + + L LP + F DT + G V +
Sbjct: 114 LAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPP-LPNTQFTRDTTCWIYGGVTL 172
Query: 149 TKPGNTQRHKEVAV 162
R +E +
Sbjct: 173 NPMYWPARRQETLL 186
>d1jdwa_ d.126.1.2 (A:) L-arginine: glycine amidinotransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 360
Score = 31.9 bits (71), Expect = 0.097
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 99 IDEARRQHESFVALLRDLGLDVIELPPDE 127
+ +A + E +L+ G+ V P +
Sbjct: 57 LKKAVAEIEEMCNILKTEGVTVRRPDPID 85
>d1wd7a_ c.113.1.1 (A:) Probable uroporphyrinogen-III synthase
{Thermus thermophilus [TaxId: 274]}
Length = 254
Score = 31.2 bits (70), Expect = 0.16
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 96 KVGIDEARRQHESFVALLRDLGLDVIELPPD--EDLPESVFIEDTAVIVNGI 145
+V RR+ E+F AL LG + P E +P + + + G+
Sbjct: 3 RVAYAGLRRK-EAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGV 53
>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 250
Score = 30.6 bits (68), Expect = 0.22
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 84 VTVSLLTYVLMYKVGIDEARRQ-HESFVALLRDLGLDVIEL-----PPDEDLPE 131
V++SL +Y G D R + SF+ LL G +EL D
Sbjct: 4 VSISLSSY------GADLVRSRGQASFLPLLAMAGAQRVELREELFAGPPDTEA 51
>d1u1ha1 c.1.22.2 (A:2-395)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 394
Score = 28.8 bits (64), Expect = 1.1
Identities = 6/47 (12%), Positives = 12/47 (25%), Gaps = 6/47 (12%)
Query: 99 IDEARRQHESFVALLRDLGLDVIELPPDEDLPESVFIEDTAVIVNGI 145
+ R + G I P + DT ++ +
Sbjct: 37 SADLRSSI---WKQMSAAGTKFI---PSNTFAHYDQVLDTTAMLGAV 77
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120
[TaxId: 103690]}
Length = 226
Score = 27.7 bits (61), Expect = 1.8
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 258 ASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLM 295
+ P G + + +A + S L Y+ M
Sbjct: 17 IGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAM 54
Score = 26.5 bits (58), Expect = 4.8
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 57 ASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM 94
+ G + + +A + S L Y+ M
Sbjct: 17 IGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAM 54
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium
salinarum [TaxId: 2242]}
Length = 239
Score = 26.9 bits (59), Expect = 2.9
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 57 ASFAQTFVEMNASTGEWKGAFGIAFMVVTVSLLTYVLM---YKVGIDEARRQH 106
A ++ G + +G M+ VS+ +Y+ + VG+ E H
Sbjct: 20 AILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGH 72
Score = 26.2 bits (57), Expect = 5.9
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 258 ASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLM 295
A ++ G + +G M+ VS+ +Y+ +
Sbjct: 20 AILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGL 57
>d2o5ha1 d.363.1.1 (A:1-131) Hypothetical protein NMB0513 {Neisseria
meningitidis [TaxId: 487]}
Length = 131
Score = 26.0 bits (57), Expect = 3.5
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 35 LKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMV 83
LK + G T EE + ++R + + +E N G G+ V
Sbjct: 65 LKLQRDGQIIGHTPEEWEQIFREVWPEYEIEPNPLPGYAPFDIGMWLTV 113
Score = 26.0 bits (57), Expect = 3.9
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 236 LKQKEKGDWKNLTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMV 284
LK + G T EE + ++R + + +E N G G+ V
Sbjct: 65 LKLQRDGQIIGHTPEEWEQIFREVWPEYEIEPNPLPGYAPFDIGMWLTV 113
>d1fnya_ b.29.1.1 (A:) Legume lectin {Black locust (Robinia
pseudoacacia) [TaxId: 35938]}
Length = 237
Score = 26.3 bits (57), Expect = 4.8
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 247 LTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFP 302
+ + T ASF +F + A G+AF + V L +GIF
Sbjct: 56 FQIWDSTTGNVASFVTSFTFIIQAPNPATTADGLAFFLAPVDTQPLDLGGMLGIFK 111
Score = 25.5 bits (55), Expect = 8.7
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 46 LTLEEKKTLYRASFAQTFVEMNASTGEWKGAFGIAFMVV 84
+ + T ASF +F + + A G+AF +
Sbjct: 56 FQIWDSTTGNVASFVTSFTFIIQAPNPATTADGLAFFLA 94
>d1avba_ b.29.1.1 (A:) Phytohemagglutinin-L, PHA-L, also arcelin
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 226
Score = 26.2 bits (57), Expect = 5.8
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 247 LTLEEKKTLYRASFAQTFVEMNAPTGEWKGAFGIAFMVVTVSLLTYVLMYKVGIFP 302
+ + ++ ASF+ F A+G+AF +V V + +G+F
Sbjct: 52 IQINDRTIDNLASFSTNFTFRINAKNIENSAYGLAFALVPVGSRPKLKGRYLGLFN 107
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite
reductase subunit beta, DsrB {Desulfovibrio vulgaris
[TaxId: 881]}
Length = 177
Score = 25.8 bits (56), Expect = 6.0
Identities = 4/33 (12%), Positives = 9/33 (27%), Gaps = 4/33 (12%)
Query: 101 EARRQHESFVALLRDLGLD----VIELPPDEDL 129
++E +G + + L L
Sbjct: 125 ANAYKYERLGEWAERIGWERFFSLTGLEFSHHL 157
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 285
Score = 26.0 bits (56), Expect = 6.8
Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 294 LMYKVGIFPEKAETLSEEHRQEMLQKMIDL 323
Y F TL +E + + +
Sbjct: 29 QTYSCAYFERDDMTL-QEAQIAKIDLALGK 57
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 25.8 bits (57), Expect = 8.0
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 102 ARRQHESFVALLRDLGLDVIEL 123
++++ F G + IE+
Sbjct: 84 SQKKVNEFHRYCTYFGCEYIEI 105
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 25.4 bits (56), Expect = 9.3
Identities = 4/22 (18%), Positives = 12/22 (54%)
Query: 102 ARRQHESFVALLRDLGLDVIEL 123
++ + + F+ LG + +E+
Sbjct: 83 SKGKFDEFLNECEKLGFEAVEI 104
>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae
[TaxId: 573]}
Length = 563
Score = 25.9 bits (55), Expect = 9.3
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 5/126 (3%)
Query: 113 LRDLGLDVIELPPDEDLPESVFIEDTAVIVNGIVLITKPGNTQRHKEVAVSATRALIKPK 172
L G+ IEL P DL D + N+ + +
Sbjct: 64 LSASGVTHIELLPVFDLATVNEFSDKVADIQQPFSRLCEVNSAVKSSEFAGYCDSGSTVE 123
Query: 173 SLAASYSAASAHSNEPVAKEHFDF-FPNREVVGYG----FNGEPGYIDNPMFPYPSIRFK 227
+ + N V + + GY E Y +P F+
Sbjct: 124 EVLTQLKQNDSKDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIKEFR 183
Query: 228 AITKEL 233
+ + +
Sbjct: 184 TMIQAI 189
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 25.6 bits (55), Expect = 9.6
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 293 VLMYKVGIFPEKAETLSEEHRQEMLQKMI 321
++ VG +K + HR M +
Sbjct: 42 GIISPVGDAYKKKGLIPAYHRVIMAELAT 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.383
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,269,225
Number of extensions: 58346
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 310
Number of HSP's successfully gapped: 33
Length of query: 344
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,226,816
Effective search space: 316518528
Effective search space used: 316518528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)