BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9452
         (1789 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SV0|A Chain A, Crystal Structure Of Casein Kinase-1 Like Protein In Plant
          Length = 483

 Score = 30.8 bits (68), Expect = 6.7,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 12/96 (12%)

Query: 589 IVNQDSPVGNEQSESQDQTTNSDSIEPINQGTTANPNVNIESTSVNADPAINSDPSSIP- 647
           +  Q +PVGN+ S S++   ++ +    + G++  P V   S+S +  P   S+PS    
Sbjct: 356 LAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAV---SSSRDVMPIDTSEPSRTRA 412

Query: 648 --------EQVSSDNHEEPTQTNQPETSSADETSSN 675
                    + S      P  + +P+ SS+   SSN
Sbjct: 413 TDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSN 448


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.292    0.111    0.280 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,762,299
Number of Sequences: 62578
Number of extensions: 1435683
Number of successful extensions: 1662
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1645
Number of HSP's gapped (non-prelim): 37
length of query: 1789
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1676
effective length of database: 7,902,023
effective search space: 13243790548
effective search space used: 13243790548
T: 11
A: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 59 (27.3 bits)