Query psy9452
Match_columns 1789
No_of_seqs 98 out of 100
Neff 1.2
Searched_HMMs 29240
Date Fri Aug 16 19:43:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5m_A Cartilage, alpha 1 type 99.2 2.2E-11 7.7E-16 105.7 6.3 62 145-214 8-69 (73)
2 3bk3_C Crossveinless 2, bone m 98.4 1.6E-07 5.5E-12 82.1 4.4 57 146-211 9-66 (67)
3 1xhh_A Beta-microseminoprotein 65.4 3.5 0.00012 38.5 2.9 52 146-199 14-66 (91)
4 3ix0_A Beta-microseminoprotein 55.3 4.3 0.00015 37.7 1.6 51 146-198 17-68 (94)
5 1gl0_I Protease inhibitor LCMI 22.9 49 0.0017 27.0 2.5 28 150-186 6-34 (35)
6 2j5h_A Teratocarcinoma-derived 21.9 24 0.00083 29.6 0.6 22 160-182 12-33 (41)
7 2xtt_A Protease inhibitor SGPI 21.0 42 0.0014 27.0 1.8 22 164-186 12-34 (36)
8 3tvj_I Protease inhibitor SGPI 8.3 1.3E+02 0.0044 24.9 1.3 20 165-185 16-37 (38)
9 1wo9_A HI-1, trypsin inhibitor 6.8 1.8E+02 0.0061 23.1 1.4 22 164-186 12-34 (35)
10 3nsj_A Perforin-1; pore formin 6.2 96 0.0033 35.0 -0.6 6 201-206 383-388 (540)
No 1
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=99.18 E-value=2.2e-11 Score=105.69 Aligned_cols=62 Identities=29% Similarity=0.806 Sum_probs=56.2
Q ss_pred CCcccCCEEccCCCCCCCCCCCccceEEeCCcceeeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCC
Q psy9452 145 GDCIIDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLECPPPPPTHRNCMPIHPGPDLCCPAYACDGPL 214 (1789)
Q Consensus 145 GDCLVDGQVYANGSDVPKpEPCEV~CYCINGiVVCDEVECelPPeNlKDCTPV~IPPGECCPTYICPdds 214 (1789)
+.|+++|++|.+| .+|+++||. +|+|.+|.|.|..+.|.. +.+|.....++|+||| +|+.+.
T Consensus 8 ~~C~~~G~~y~~g-e~W~~d~C~-~C~C~~G~v~C~~~~Cp~----~~~C~~p~~~~GeCCP--vC~~~~ 69 (73)
T 1u5m_A 8 GSCVQDGQRYNDK-DVWKPEPCR-ICVCDTGTVLCDDIICED----VKDCLSPEIPFGECCP--ICPADL 69 (73)
T ss_dssp SCEESSSCEECSS-CEECSCSSE-EEEEETTEEEEEECCCSC----CSSCSCCCCCSSCSCC--SCCSSS
T ss_pred CCeeECCEEEcCC-CEECCcCcC-ceECCCCcEEeccccCCC----ccCCCCCcccCCCcCC--CCCCcc
Confidence 5799999999999 999999999 999999999999999987 2489887788999999 997653
No 2
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=98.41 E-value=1.6e-07 Score=82.05 Aligned_cols=57 Identities=28% Similarity=0.795 Sum_probs=49.0
Q ss_pred CcccCCEEccCCCCCCCCCCCccceEEeCCcceeeeccCCCCCCCCC-CCCCCCCCCCCCCCCCcCC
Q psy9452 146 DCIIDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLECPPPPPTHR-NCMPIHPGPDLCCPAYACD 211 (1789)
Q Consensus 146 DCLVDGQVYANGSDVPKpEPCEV~CYCINGiVVCDEVECelPPeNlK-DCTPV~IPPGECCPTYICP 211 (1789)
.|.+||+.|.++ . |..++|. +|.|.+|.+.|..+.|+. +. .|.....++|+||| +|-
T Consensus 9 ~C~~eGe~~~~~-~-~~~~~C~-~C~C~~G~v~C~~~~CP~----l~~~C~~~~~~~g~CCp--~C~ 66 (67)
T 3bk3_C 9 SCENEGEVLHIP-N-ITDNPCI-SCVCLNQKAECKQEKCAP----LAEDCALVVKQTGACCE--KCK 66 (67)
T ss_dssp BCSSTTCEECCT-T-TTTSTTE-EEEECSSBEEEEECCCCC----CCTTCCCEECCTTCSSC--EEC
T ss_pred ceEECCEEEeCC-C-ccCCCcc-eeEecCCceEEccccCCC----CccccCCcccCCCCcCc--CcC
Confidence 699999999877 4 6789999 999999999999999976 22 38887778999999 773
No 3
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A
Probab=65.43 E-value=3.5 Score=38.55 Aligned_cols=52 Identities=25% Similarity=0.516 Sum_probs=39.6
Q ss_pred Ccc-cCCEEccCCCCCCCCCCCccceEEeCCcceeeeccCCCCCCCCCCCCCCCC
Q psy9452 146 DCI-IDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLECPPPPPTHRNCMPIHP 199 (1789)
Q Consensus 146 DCL-VDGQVYANGSDVPKpEPCEV~CYCINGiVVCDEVECelPPeNlKDCTPV~I 199 (1789)
.|. ++|+.+.-| ..|+.+=|. .|.|....+.|-...=.+.--+..+|..++.
T Consensus 14 ~C~D~~G~kh~l~-s~W~T~dC~-~C~C~~~Gi~CC~~~~~Pv~yd~~~C~~vfn 66 (91)
T 1xhh_A 14 ECQDLKGVSHPLN-SVWKTKDCE-ECTCGQDAISCCNTAAIPTGYDTNKCQKILN 66 (91)
T ss_dssp EEEETTTEEEECC-CCEECSSSE-EEEECSSEEEEEECSCEEESCCCSSEEEEEE
T ss_pred CCCcCCCcEEeCC-CeECCCCce-EeEecCCCcEeecCccccCcCCcccceEEec
Confidence 499 999999999 999999999 9999999998876421110011357887764
No 4
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Probab=55.33 E-value=4.3 Score=37.73 Aligned_cols=51 Identities=27% Similarity=0.572 Sum_probs=37.7
Q ss_pred Ccc-cCCEEccCCCCCCCCCCCccceEEeCCcceeeeccCCCCCCCCCCCCCCC
Q psy9452 146 DCI-IDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLECPPPPPTHRNCMPIH 198 (1789)
Q Consensus 146 DCL-VDGQVYANGSDVPKpEPCEV~CYCINGiVVCDEVECelPPeNlKDCTPV~ 198 (1789)
.|. .+|++|.-| ..|+..-|. .|+|....+.|-...-.+-.-+..+|..++
T Consensus 17 ~C~D~dG~~h~l~-S~W~T~~C~-~C~C~~~Gi~CC~~~~~Pv~yd~~~C~~if 68 (94)
T 3ix0_A 17 KCMDLKGNKHPIN-SEWQTDNCE-TCTCYETEISCCTLVSTPVGYDKDNCQRIF 68 (94)
T ss_dssp CEECTTSCEECTT-CEEECTTSE-EEEECSSEEEEEECCCEEEESCTTTEEEEE
T ss_pred cCCCCCCCEEeCC-CEECCCCCc-EeEecCCCceeccCcccccccCccccEEEe
Confidence 699 999999999 999999999 999999888886543311001123676665
No 5
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1
Probab=22.93 E-value=49 Score=27.00 Aligned_cols=28 Identities=32% Similarity=0.950 Sum_probs=22.7
Q ss_pred CCEEccCCCCCCCCCCCccceEEeC-CcceeeeccCCC
Q psy9452 150 DGQLHSNNSRIETKNPCHVQCLCVN-GAPSCESLECPP 186 (1789)
Q Consensus 150 DGQVYANGSDVPKpEPCEV~CYCIN-GiVVCDEVECel 186 (1789)
-|++|.++ |. -|.|-. |...|..+-|.+
T Consensus 6 PG~~~k~~--------CN-~C~C~~~G~~~CTlk~C~P 34 (35)
T 1gl0_I 6 PGQVKQQD--------CN-TCTCTPTGVWGCTLMGCQP 34 (35)
T ss_dssp TTCEEECS--------SC-EEEECTTSCEEEECCCCCC
T ss_pred CCcccccC--------CC-ccCCCCCCeEEEEeecccC
Confidence 45566554 99 999999 999999998875
No 6
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=21.94 E-value=24 Score=29.57 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=17.8
Q ss_pred CCCCCCCccceEEeCCcceeeec
Q psy9452 160 IETKNPCHVQCLCVNGAPSCESL 182 (1789)
Q Consensus 160 VPKpEPCEV~CYCINGiVVCDEV 182 (1789)
-|-..-|. +|+|+.|...|-..
T Consensus 12 ~W~~k~C~-LCRC~~G~LhCfp~ 33 (41)
T 2j5h_A 12 TWLPKKCS-LCRCWHGQLHCLPQ 33 (41)
T ss_dssp TCSSCCCC-CCCCCSSSCCSCCS
T ss_pred CeeecCce-EEEeecCceEEccc
Confidence 36778899 99999999877543
No 7
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=21.04 E-value=42 Score=27.04 Aligned_cols=22 Identities=36% Similarity=1.136 Sum_probs=19.7
Q ss_pred CCCccceEEe-CCcceeeeccCCC
Q psy9452 164 NPCHVQCLCV-NGAPSCESLECPP 186 (1789)
Q Consensus 164 EPCEV~CYCI-NGiVVCDEVECel 186 (1789)
..|. .|+|. +|.-.|....|+.
T Consensus 12 ~dCN-tC~C~~~G~W~CT~~~Cp~ 34 (36)
T 2xtt_A 12 QDCN-TCRCGSDGVWACTRMGCPP 34 (36)
T ss_dssp ETTE-EEEECTTSCEEEECCCCCC
T ss_pred CCCC-ccCCCCCCEEeeeCCcCCC
Confidence 3499 99999 9999999999986
No 8
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=8.30 E-value=1.3e+02 Score=24.90 Aligned_cols=20 Identities=35% Similarity=0.963 Sum_probs=16.5
Q ss_pred CCccceEEeC-Cc-ceeeeccCC
Q psy9452 165 PCHVQCLCVN-GA-PSCESLECP 185 (1789)
Q Consensus 165 PCEV~CYCIN-Gi-VVCDEVECe 185 (1789)
-|. .|+|.. |. ..|..+.|+
T Consensus 16 ~CN-tC~C~~dG~~a~CT~k~Cp 37 (38)
T 3tvj_I 16 KCN-TCRCGSDGKSAVCTKLWCN 37 (38)
T ss_dssp TTE-EEEECTTSSCEEEECCEEC
T ss_pred cCc-eeECCCCCceeEeecccCC
Confidence 499 999997 55 489999886
No 9
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=6.80 E-value=1.8e+02 Score=23.06 Aligned_cols=22 Identities=27% Similarity=0.847 Sum_probs=19.0
Q ss_pred CCCccceEEe-CCcceeeeccCCC
Q psy9452 164 NPCHVQCLCV-NGAPSCESLECPP 186 (1789)
Q Consensus 164 EPCEV~CYCI-NGiVVCDEVECel 186 (1789)
.-|. .|+|. +|.-.|....|..
T Consensus 12 ~dCN-tCtC~~~g~W~CT~~~C~~ 34 (35)
T 1wo9_A 12 QDCN-TCTCTPTGIWGCTRKACRT 34 (35)
T ss_dssp ETTE-EEEECTTSCEECCCSSSSC
T ss_pred CCCC-ceECCCCCEEcCCCCCCCC
Confidence 4699 99999 9999999988864
No 10
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=6.17 E-value=96 Score=34.98 Aligned_cols=6 Identities=50% Similarity=1.475 Sum_probs=4.6
Q ss_pred CCCCCC
Q psy9452 201 PDLCCP 206 (1789)
Q Consensus 201 PGECCP 206 (1789)
.|.|||
T Consensus 383 ~~~~C~ 388 (540)
T 3nsj_A 383 NQDCCP 388 (540)
T ss_dssp CGGGCB
T ss_pred cccccc
Confidence 477888
Done!