RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9452
(1789 letters)
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two
SUB-domain architecture, beta-sheet, structural protein;
NMR {Homo sapiens} SCOP: g.27.1.2
Length = 73
Score = 51.9 bits (124), Expect = 2e-08
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 140 ESPANGDCIIDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLECPPPPPTHRNCM-PIH 198
E G C+ DGQ +++ PC C+C G C+ + C C+ P
Sbjct: 3 EFQEAGSCVQDGQRYNDKDVW-KPEPC-RICVCDTGTVLCDDIICEDVKD----CLSPEI 56
Query: 199 PGPDLCCP 206
P CCP
Sbjct: 57 P-FGECCP 63
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta
superfamily, BMP modulator proteins, chordin, BMP
inhibitor, chondrogenesis; 2.70A {Danio rerio}
Length = 67
Score = 42.0 bits (98), Expect = 5e-05
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 162 TKNPCHVQCLCVNGAPSCESLECPPPPPTHRNCMPIHPGPDLCCPAYACDG 212
T NPC + C+C+N C+ +C P +C + CC C G
Sbjct: 23 TDNPC-ISCVCLNQKAECKQEKCAPLA---EDCALVVKQTGACCE--KCKG 67
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-04
Identities = 43/363 (11%), Positives = 85/363 (23%), Gaps = 101/363 (27%)
Query: 1493 NEQSIS-QDAEQVNEPDSTTQLPSQSVEDEQPIVEQSQTTGDAEQPVSQEAESSTSQSEP 1551
E +D V E + V+D + + + E
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDM-------------PKSILSKEEIDHIIMSK 58
Query: 1552 QVEAEQPN-----LEQTQTEDAQPIAQSADQEGISEATTALPSQSVSTENEQP-INTEVV 1605
L Q E Q + + + + TE QP + T +
Sbjct: 59 DAV-SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-----KTEQRQPSMMTRMY 112
Query: 1606 SETESPVQSEPQTEGEQTVV---DQTQLTEGTEQDADQVSNSEPTTV------TSQSALV 1656
E + ++ Q + V +L + + + + ++ +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVA 167
Query: 1657 ----ENEQPSSQDSGQV-----GETESSTVV-------SSQSEPQ-VEGEQPIVNQPQAV 1699
+ + + ++ S V Q +P N +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 1700 EGADQTIT--------QNA----DEVSG---VEA---------TTSIISHSETSDAQPND 1735
+ +N V A TT +D
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ---VTDFLSAA 284
Query: 1736 SNVSVSEESNLDSTTVNVQAEPSGV-ESATSVPSQSDIPQE-----P-------ASAEDT 1782
+ +S + + + T E + Q D+P+E P S D
Sbjct: 285 TTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDG 340
Query: 1783 LDT 1785
L T
Sbjct: 341 LAT 343
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic
secretory protein, solution structure, Na+, K+ ATPase
inhibitor, unknown function; NMR {Sus scrofa} PDB:
2iz4_A
Length = 91
Score = 33.2 bits (75), Expect = 0.11
Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 14/80 (17%)
Query: 142 PANGDCIIDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLECPPPPPTHRNCMPI-HPG 200
N + G H NS +TK+ C +C C A SC + P C I +
Sbjct: 11 KPNECQDLKGVSHPLNSVWKTKD-CE-ECTCGQDAISCCNTAAIPTGYDTNKCQKILNKK 68
Query: 201 -----------PDLCCPAYA 209
P C
Sbjct: 69 TCTYTVVEKKDPGKTCDVTG 88
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 33.2 bits (76), Expect = 0.82
Identities = 20/170 (11%), Positives = 42/170 (24%)
Query: 647 PEQVSSDNHEEPTQTNQPETSSADETSSNQQGESTVGADQPADVQDQTVNVNQGESTTLS 706
PE+ + +E+P + + S E + V E S
Sbjct: 22 PEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAES 81
Query: 707 NNVSEGEAPNADQSEVENNQPIDNESVTTIPTQNEQTIGQSDVAVDEDTNASIDQDKPSS 766
A V P E ++ + A + ++
Sbjct: 82 EKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVEAA 141
Query: 767 EEIEVTTALPVQSEPNSDNKISAGAQEDTLTEASTSSNVQDVDQTSASQS 816
EE + + + +A + A V+++ Q +
Sbjct: 142 EEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPT 191
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 32.8 bits (74), Expect = 1.0
Identities = 17/149 (11%), Positives = 41/149 (27%), Gaps = 5/149 (3%)
Query: 1470 SNDNQVSSTEPTNDASSQSVLAENEQSISQDAEQVNEPDSTTQLPSQSVEDEQP--IVEQ 1527
++ V P + +E + E+ N + P+ ++ ++
Sbjct: 4 ESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKK 63
Query: 1528 SQTTGDAEQPVSQEAESSTSQSEPQVEAEQPNLEQTQTEDAQPIAQSADQEGISEATTAL 1587
+ G + S +++ Q +E +E +
Sbjct: 64 KKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIEL---FSVGQGPAKTMEEASKRSYQFW 120
Query: 1588 PSQSVSTENEQPINTEVVSETESPVQSEP 1616
+Q V E V + ++ EP
Sbjct: 121 DTQPVPKLGEVVNTHGPVEPDKDNIRQEP 149
>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted,
cross- reactivity; 3.05A {Solenopsis invicta}
Length = 218
Score = 31.4 bits (71), Expect = 1.9
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 179 CESLECPPPPPTHRNCMPIHPGPDLCCPAYACDGPLTPALQSD 221
C C H C P P C Y+ + T A +
Sbjct: 4 CNLQSCKRNNAIHTMCQYTSPTPGPMCLEYS-NVGFTDAEKDA 45
>1rid_A Complement control protein; regulation, SCR, immune system; HET:
IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1
g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A
1vvc_A 1vvd_A 1vve_A
Length = 244
Score = 30.2 bits (68), Expect = 5.1
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 22/67 (32%)
Query: 141 SPANGDCIIDGQLHSNNSRIETKNPCHVQC------------LCVNG----APSCESLEC 184
S +NG +++ S C LC G P+C+ ++C
Sbjct: 134 SISNGRHNGYEDFYTDGSV------VTYSCNSGYSLIGNSGVLCSGGEWSDPPTCQIVKC 187
Query: 185 PPPPPTH 191
P P ++
Sbjct: 188 PHPTISN 194
>1w0r_A Properdin, factor P; X-RAY scattering, analytical
ultracentrifugation, complement, thrombospondin type I
repeats, constrained modelling; NMR {Homo sapiens} PDB:
1w0s_A
Length = 442
Score = 30.4 bits (68), Expect = 5.7
Identities = 14/61 (22%), Positives = 16/61 (26%), Gaps = 15/61 (24%)
Query: 165 PCHVQC---------LCVNGAPSCESLECPPPPPTHRNCMPIHPGPDLCCPAYACDGPLT 215
PC V C C + AP C CP C CP +
Sbjct: 120 PCSVTCSKGTRTRRRACNHPAPKCGG-HCPGQAQESEACD-----TQQVCPTHGAWATWG 173
Query: 216 P 216
P
Sbjct: 174 P 174
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 28.9 bits (65), Expect = 7.8
Identities = 7/63 (11%), Positives = 15/63 (23%), Gaps = 8/63 (12%)
Query: 129 NETGVTAEDVNESP-----ANGDCIIDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLE 183
+ T + + +G C I+ + S+ + C
Sbjct: 35 DPTKTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDP---I 91
Query: 184 CPP 186
C
Sbjct: 92 CGK 94
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 30.0 bits (66), Expect = 8.6
Identities = 11/89 (12%), Positives = 20/89 (22%), Gaps = 4/89 (4%)
Query: 144 NGDCIIDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLECPPPPPTHRNCMPIHPGPDL 203
I+ SN S + C PSC + C + +
Sbjct: 139 QWRDIVSSDFLSNMSMDFQNHLGS----CQKCDPSCPNGSCWGAGEENCQKLTKIICAQQ 194
Query: 204 CCPAYACDGPLTPALQSDSQVSVATEQTN 232
C P + +++
Sbjct: 195 CSGRCRGKSPSDCCHNQCAAGCTGPRESD 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.290 0.109 0.275
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,039,790
Number of extensions: 1055045
Number of successful extensions: 874
Number of sequences better than 10.0: 1
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 77
Length of query: 1789
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1682
Effective length of database: 3,714,246
Effective search space: 6247361772
Effective search space used: 6247361772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.6 bits)
S2: 64 (28.8 bits)