RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9452
         (1789 letters)



>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 145 GDCIIDGQLHSNNSRIETKNPCHVQCLCVNGAPSCESLECPPPPPTHRNCMPIHPGPDLC 204
           G C+ DGQ +++        PC   C+C  G   C+ + C         C+        C
Sbjct: 8   GSCVQDGQRYNDKDVW-KPEPC-RICVCDTGTVLCDDIICEDVKD----CLSPEIPFGEC 61

Query: 205 CP 206
           CP
Sbjct: 62  CP 63


>d1qqya_ d.2.1.2 (A:) Lysozyme {Dog (Canis familiaris), milk [TaxId:
           9615]}
          Length = 130

 Score = 29.1 bits (65), Expect = 2.0
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 125 ESDENETGVTAEDVNESPANGDCIIDGQLHSNNSRIETKNPCHVQC 170
           ES+ N       + N S   G   ++ +    ++   + N C++ C
Sbjct: 36  ESNFNTQAFNGRNSNGSSDYGIFQLNSKWWCKSNSHSSANACNIMC 81


>d1tzpa_ d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase MepA
           {Escherichia coli [TaxId: 562]}
          Length = 255

 Score = 29.5 bits (66), Expect = 3.0
 Identities = 12/55 (21%), Positives = 14/55 (25%), Gaps = 17/55 (30%)

Query: 167 HVQCLCVNGAPSCES-----------------LECPPPPPTHRNCMPIHPGPDLC 204
           HV+  C   +  CE                   E P P  T        P P  C
Sbjct: 192 HVRLRCPADSLECEDQPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPSC 246


>d1s78a4 g.3.9.1 (A:489-564) Protooncoprotein Her2 extracellular
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 27.4 bits (60), Expect = 3.8
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 172 CVNGAPSCESLECPPPPPTHRNCMPIHPGPDLCCPAYACDGP 213
           CV      + L  P      R+C+P HP       +  C GP
Sbjct: 30  CVEECRVLQGL--PREYVNARHCLPCHPECQPQNGSVTCFGP 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.290    0.109    0.275 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,539,731
Number of extensions: 172057
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 9
Length of query: 1789
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1691
Effective length of database: 1,062,056
Effective search space: 1795936696
Effective search space used: 1795936696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.6 bits)
S2: 60 (27.2 bits)