Query psy946
Match_columns 714
No_of_seqs 336 out of 1017
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 19:54:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3569|consensus 100.0 5E-92 1.1E-96 731.5 32.9 409 2-533 2-422 (425)
2 KOG3570|consensus 100.0 8.7E-37 1.9E-41 340.2 21.8 406 12-489 9-560 (1588)
3 KOG1090|consensus 100.0 2.8E-36 6E-41 339.9 21.7 388 27-526 28-445 (1732)
4 KOG2080|consensus 100.0 1E-36 2.2E-41 339.7 14.7 459 10-502 65-659 (1295)
5 smart00799 DENN Domain found i 100.0 6.8E-34 1.5E-38 283.0 16.6 180 88-270 1-183 (183)
6 PF02141 DENN: DENN (AEX-3) do 100.0 3.1E-34 6.8E-39 285.8 12.2 181 87-270 1-185 (185)
7 KOG2127|consensus 99.9 2.2E-28 4.8E-33 285.3 10.8 227 279-510 13-275 (1020)
8 KOG3569|consensus 99.9 1.6E-27 3.5E-32 249.5 5.2 112 178-289 187-298 (425)
9 PF02141 DENN: DENN (AEX-3) do 99.9 8E-24 1.7E-28 211.0 3.9 104 285-389 82-185 (185)
10 smart00799 DENN Domain found i 99.9 3E-23 6.4E-28 206.7 7.3 104 286-389 80-183 (183)
11 KOG2080|consensus 99.8 1E-19 2.2E-24 204.6 5.5 251 150-405 36-430 (1295)
12 KOG2127|consensus 99.7 7.5E-18 1.6E-22 197.8 4.7 127 155-284 10-140 (1020)
13 smart00800 uDENN Domain always 99.6 4.9E-16 1.1E-20 137.2 8.1 74 12-85 2-88 (89)
14 KOG3570|consensus 99.6 8.5E-16 1.8E-20 173.5 6.5 126 291-416 300-431 (1588)
15 PF09794 Avl9: Transport prote 99.5 2E-13 4.3E-18 149.2 15.6 241 16-277 2-320 (379)
16 smart00801 dDENN Domain always 99.4 2.7E-13 5.9E-18 113.9 6.3 66 419-484 1-69 (69)
17 PF03455 dDENN: dDENN domain; 99.4 2.9E-13 6.4E-18 113.4 5.6 66 419-484 2-68 (68)
18 PF03456 uDENN: uDENN domain; 99.4 1.1E-13 2.4E-18 115.0 2.5 57 29-85 1-64 (65)
19 KOG2432|consensus 99.3 2.6E-11 5.6E-16 130.8 16.1 244 9-254 23-322 (565)
20 KOG1090|consensus 99.3 1.5E-12 3.2E-17 149.6 2.0 125 285-415 180-305 (1732)
21 KOG3823|consensus 99.2 4.7E-10 1E-14 120.9 18.5 369 16-484 12-431 (630)
22 PF08616 SPA: Stabilization of 98.2 2.8E-06 6E-11 78.5 6.5 95 178-275 12-112 (113)
23 PF08616 SPA: Stabilization of 97.5 0.00014 3E-09 67.3 5.7 94 297-393 12-111 (113)
24 PF09794 Avl9: Transport prote 97.1 0.0013 2.8E-08 72.8 7.8 97 298-396 176-320 (379)
25 PF07792 Afi1: Docking domain 93.9 0.24 5.3E-06 47.9 8.0 92 19-110 5-142 (145)
26 PF09804 DUF2347: Uncharacteri 71.2 82 0.0018 33.9 13.6 159 31-201 13-195 (280)
27 KOG3823|consensus 35.2 22 0.00047 40.2 1.8 37 298-334 183-219 (630)
28 PF02330 MAM33: Mitochondrial 24.2 85 0.0018 31.8 3.8 40 476-526 163-202 (204)
29 KOG2432|consensus 24.0 5.8E+02 0.013 29.4 10.3 185 299-485 242-483 (565)
30 KOG4704|consensus 21.0 1.2E+03 0.026 26.1 11.9 169 30-207 17-217 (431)
No 1
>KOG3569|consensus
Probab=100.00 E-value=5e-92 Score=731.51 Aligned_cols=409 Identities=39% Similarity=0.639 Sum_probs=372.4
Q ss_pred cccccchhchhchheeEEEEeCCCC---CCCccEEEeCCCCCCCchhcCcCCcccccCCccCC-----cceEEEEEEecC
Q psy946 2 DYFFFSRDNVKHLFECFCEVARPQG---KEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENT-----SVEYYSFVLTDL 73 (714)
Q Consensus 2 ~~~~~~~~~~~~lFe~f~~V~~~~~---~~~P~Il~~yP~~~~d~~~~~~I~~FCFP~g~~~~-----~~~~FsFVLTd~ 73 (714)
.|... +++++++|||||+|+.++. .+.|.|+++||+|+.|++.+++||+||||++.++. ..|+|||||||+
T Consensus 2 ~~~~~-~~~~~~lfe~f~evs~pk~~~~~~~P~v~~QFP~d~~dee~lkaipqFCFP~~~e~~~vs~~~~q~FsFvLTd~ 80 (425)
T KOG3569|consen 2 MELRE-RQGVRTLFEYFVEVSLPKKPGNTYLPEVTYQFPPDFQDEEILKAIPQFCFPDAVEWLPVSEYGSQTFSFVLTDE 80 (425)
T ss_pred Ccchh-ccCcccceeEEEEEecCCCCCCccCccchhhCCCccccHHHHhhchhccCCcccccccccccccceEEEEEEcC
Confidence 44444 8899999999999998753 69999999999999999999999999999999864 459999999999
Q ss_pred CCCeEEEEeecCCCCCeEEEEEcCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCCCceEEEEeCCc-eee
Q psy946 74 DSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNT-EYT 152 (714)
Q Consensus 74 ~G~r~yG~C~~~p~~~~aicILS~~P~~~~F~~iL~~i~~~~~~~~~~~le~~i~~l~~~p~P~pG~~l~~~~~~~-~~~ 152 (714)
||+|+|||||..++.++|+||||++|||++|+|+|+.+.+.+...+.+.++.+|..+++.|+|.||.++.+...+. ...
T Consensus 81 dg~rrFGfCRL~~G~~~c~CilS~l~wF~vF~KlLn~v~~~~~~~q~~~v~~~l~~l~~~p~P~pg~tv~l~~~~~~~~~ 160 (425)
T KOG3569|consen 81 DGSRRFGFCRLPSGLPECYCILSRLGWFGVFSKLLNEVEDRRGISQEADVEPFLRSLYEAPFPAPGKTVKLKVFSPGSGT 160 (425)
T ss_pred CCceeeeeEecCCCCCeEEEEeeCCChHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCCce
Confidence 9999999999888999999999999999999999999998877667999999999999999999999999877652 233
Q ss_pred EeCCCCCCCCCCCCCCccccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccc
Q psy946 153 CQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDL 232 (714)
Q Consensus 153 ~~~P~~~~LP~~~~~~~l~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~L 232 (714)
.-.|+..+||++++++++++++.
T Consensus 161 e~ipd~r~LpS~~E~~~f~elf~--------------------------------------------------------- 183 (425)
T KOG3569|consen 161 EVIPDTRPLPSILEHVDFTELFV--------------------------------------------------------- 183 (425)
T ss_pred EECcCCCCCCCcccccCHHHHHh---------------------------------------------------------
Confidence 34567778888888777765433
Q ss_pred cccccCCccccccccchhhhhhhcccCCCEEEEecCCCcccCCCCCCCCCCcccccccceeecCCcchhhhhhhhccccc
Q psy946 233 LDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERR 312 (714)
Q Consensus 233 ld~leaP~PfliGi~s~~~~~~~~~~~~d~v~vDLD~~~i~~~~~dl~~lP~~l~~l~~f~~L~~~nil~l~~slLlErr 312 (714)
+++++||++||+|+|+|||
T Consensus 184 -------------------------------------------------------------als~~qml~ifASlL~ERR 202 (425)
T KOG3569|consen 184 -------------------------------------------------------------ALSVRQMLQIFASLLLERR 202 (425)
T ss_pred -------------------------------------------------------------hcCHHHHHHHHHHHHhhce
Confidence 8999999999999999999
Q ss_pred eeeecccccchhHHHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeecccchhhHHhhhccCCCeEEEecCCCccc
Q psy946 313 IVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLT 392 (714)
Q Consensus 313 II~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~ 392 (714)
|||+++++|+||+|+||..+|||||.|||+||||||++|+||+||||||+||||+++++++++.+++|||+||+|+|+++
T Consensus 203 Iifia~KLStLssCiHa~~ALLYPm~WqH~yIPvLPpsLlD~vCaPmPyLIGv~~s~lerv~~~~leeVv~vnld~~tl~ 282 (425)
T KOG3569|consen 203 IIFIASKLSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDYVCAPMPYLIGVHSSLLERVRELPLEEVVMVNLDENTLE 282 (425)
T ss_pred eEeeccchhHHHHHHHHHHHHhhhhhhheeeeccCCHHHHhHhcCCcceeecchHHHHHHHhhCCccceEEEEccCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHhhhcHHhhhccCCCCceeecHHHhhhh-cCCChHHHHH
Q psy946 393 TPHDDLNTLPQDVIATLKKQLRNKT--TGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVES-RPAAMQPFLR 469 (714)
Q Consensus 393 ~p~~dl~~LP~~~~~~Lk~~L~~~~--~~d~i~~aFl~~~~~ll~~Yr~~l~~~~~~~~~F~~e~Fl~s-~~~~~~~Fl~ 469 (714)
++++|...||+++++.|+++|++.. .||+|+++|+|+|+.++|+|+++++..+++.++|++|+|+++ +++.+|.|++
T Consensus 283 ~~fdD~~~LP~~v~~~Lk~~L~k~~la~~d~Vs~~Flra~v~lfG~Y~~~l~~~~~e~~tF~eE~F~k~~~s~s~r~Fl~ 362 (425)
T KOG3569|consen 283 SPFDDVQALPPKVQSALKNRLRKNELATNDGVSRAFLRAFVELFGHYRSALTQSPGEPRTFQEEAFVKQVRSKSMRRFLE 362 (425)
T ss_pred ccccchhhCCHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHhhhhhhhcccCCCCCceeeHHHHHHHcccHHHHHHHH
Confidence 9999999999999999999998733 499999999999999999999999999999999999999999 5679999999
Q ss_pred HHHhhhHHHHHHHHHHhhhcCCCCCcchhHHHHhhhccCCCchhHHHHHHHHHhhhcccCCccc
Q psy946 470 KMLDLQIFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEF 533 (714)
Q Consensus 470 ~f~eTQmF~~FIeerl~~~ns~~~f~D~Fe~e~~~~~~~~~~~~~~~y~~w~~~~~~~~~g~~~ 533 (714)
.|+++|||++||++|+..+|+|.||+|.||+||.... .+.+ -.+.|+.|..+.+|+ ||+.
T Consensus 363 ~~~~~QlF~~FI~~Rl~~~n~g~G~~dqfe~Ei~~~~-~~~~-~~k~~~~~~~~~~K~--~g~~ 422 (425)
T KOG3569|consen 363 VFVELQLFKQFIQDRLELKNDGKGFFDQFEEEIEEGL-PSGE-PSKLNKFLKGLGNKM--SGLH 422 (425)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHhcC-CCCC-ccchhhhhhhhcccc--ccee
Confidence 9999999999999999999999999999999998654 3333 246899999999997 6654
No 2
>KOG3570|consensus
Probab=100.00 E-value=8.7e-37 Score=340.15 Aligned_cols=406 Identities=20% Similarity=0.322 Sum_probs=283.8
Q ss_pred hchheeEEEEeCCC--C---CCCccEEEeCCC-CCCCchhcCcCCcccccCCccC--------CcceEEEEEEecCC-CC
Q psy946 12 KHLFECFCEVARPQ--G---KEPAWVLQKFPG-SYKDESVLKNVPKFAYPCKLEN--------TSVEYYSFVLTDLD-SK 76 (714)
Q Consensus 12 ~~lFe~f~~V~~~~--~---~~~P~Il~~yP~-~~~d~~~~~~I~~FCFP~g~~~--------~~~~~FsFVLTd~~-G~ 76 (714)
.+|.||.++||... + ...|++++|||. |+.|.+++..+-.||.|+|+.. ...++|.|+|||.| |+
T Consensus 9 PRL~DylviVGar~P~~~~~vq~PelLRRYP~~DH~dFpLP~Dvv~FCQPEGCtsv~~Rr~~~rD~tsFVF~LTdKDsgk 88 (1588)
T KOG3570|consen 9 PRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHTEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGV 88 (1588)
T ss_pred hHHhhhhheecccCCCCCCccccHHHHhhCCccccccCCCCCCeEEEeCCccccchhhhhhcccCCceEEEEEecccCcc
Confidence 48999999999753 2 367999999998 6889999999999999999853 24689999999998 68
Q ss_pred eEEEEeecC----------------------------------------------C----------C-------------
Q psy946 77 FTFGYCRHD----------------------------------------------P----------K------------- 87 (714)
Q Consensus 77 r~yG~C~~~----------------------------------------------p----------~------------- 87 (714)
.+||+|..| | .
T Consensus 89 tRYGICvNFYrsf~~r~s~~~g~~gag~Rg~~g~h~~~a~~~gg~~~s~s~s~~qP~sads~~~~~~sP~~~r~a~~~~r 168 (1588)
T KOG3570|consen 89 TRYGICVNFYRSFQKRISKEKGEGGAGSRGKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQSPRGKRRAKAGSR 168 (1588)
T ss_pred eeeEEEeeeehhhhhccchhccccccccCCCCCCccccccCCCCcCcCcCCcCcCCCccCCCCccccCCCCchhhhhccc
Confidence 899999953 0 0
Q ss_pred ----CCeEEEEEcCcccHHHHHHHHHHHHHHhc---C--------C----------------------------ChHHHH
Q psy946 88 ----SDTSMVIISLLPWHESFYKLLNCVVEITN---G--------S----------------------------SPQLLW 124 (714)
Q Consensus 88 ----~~~aicILS~~P~~~~F~~iL~~i~~~~~---~--------~----------------------------~~~~le 124 (714)
+-+++|+||+||||+.|+++|-.+.+++. . . ...+||
T Consensus 169 ~rn~sLTSLC~iSHhPFfstFrecL~~LKrliD~cner~~~kr~G~~~~v~rD~vW~ilTG~h~~e~~~s~vlhd~rEIE 248 (1588)
T KOG3570|consen 169 SRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGVQRDTMWRIFTGSLLVEEKSSALLHDLREIE 248 (1588)
T ss_pred ccccchhhhhhhccCchHHHHHHHHHHHHHHHHhhcccchhhhcCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 12589999999999999998877655431 0 0 013788
Q ss_pred HHHHHHhcCCCCCCCce-EEEEeCC----ceeeEeCCCCCCCCCCCCCCccccccccChhhHHHHHHHHhcCCcEEEEeC
Q psy946 125 TFLEDIYNANIPEYGQI-IYATSKN----TEYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSK 199 (714)
Q Consensus 125 ~~i~~l~~~p~P~pG~~-l~~~~~~----~~~~~~~P~~~~LP~~~~~~~l~~~~~Ls~~~Il~l~~alLlErkII~~S~ 199 (714)
.+|..|+..|+|.||++ +.+.... ..+.+..|+...+..+....+ ..+.-|+++..+++|+++|+|.||+|.|+
T Consensus 249 tWIlrLLssPVPVpG~trV~iEVlp~~l~~~l~FALPDhtRFtLvDFPLH-lPlElLGvd~cL~VlT~imlE~Kvv~QSR 327 (1588)
T KOG3570|consen 249 AWIYRLLRSPVPVSGQKRVDIEVLPQELQPALTFALPDPSRFTLVDFPLH-LPLELLGVDACLQVLTCILLEHKVVLQSR 327 (1588)
T ss_pred HHHHHHhcCCCCCCCcceeEEEecChhcccceeeccCCCceeeeeccccc-CcHHHhhHHHHHHHHHHHHHhceeeeeec
Confidence 99999999999999987 6555432 245555555433322211111 13556889999999999999999999999
Q ss_pred CcchhHHHHHhhhhhhccccccceeeeccccccc---ccccCCccccccccchhhhhhh-cccCCCEEEEecCCCcccCC
Q psy946 200 RLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLL---DYLTAPMPYMVGLPEILLDSVR-RNELGDVVLLNADTNVLTTP 275 (714)
Q Consensus 200 ~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Ll---d~leaP~PfliGi~s~~~~~~~-~~~~~d~v~vDLD~~~i~~~ 275 (714)
++..||++|.|+.+||||++|..+.||+||..|. .+|-||+|||||+.++++---. ..-++|+++||||++.++.|
T Consensus 328 dYNAlSMsvmafVamlYPLEYMFPVIPLLPtcm~sAEQLLLAPTPfiIGVPaSFf~ykk~f~lPdDvwlVDLDsn~l~~P 407 (1588)
T KOG3570|consen 328 DYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAP 407 (1588)
T ss_pred cccHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHhcCCCCeEeccchHHhhhhhhccCCCceEEEecCCCceeCC
Confidence 9999999999999999999999999999999654 7889999999999999775432 35689999999999999999
Q ss_pred CC--CCCCCCcccccccceeecCCcchhhhhhhhccccceeeecccccchhHH--HHhhhhhccCcccccccccCCCc-c
Q psy946 276 HD--DLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSAC--VQAANLVIYPMCWQHIFIPLMPR-D 350 (714)
Q Consensus 276 ~~--dl~~lP~~l~~l~~f~~L~~~nil~l~~slLlErrII~~S~~ls~Ls~~--v~al~sLl~Pf~W~h~~IPvLP~-~ 350 (714)
.+ .+|.||.--+-.+ + + + |-.+ +..++++ -||.+-. |
T Consensus 408 t~~e~iP~LPEPe~t~L-------K-----------~--------h---LKqa~~~~sln~~---------~~~~~~~~h 449 (1588)
T KOG3570|consen 408 TNAEVLPILPEPESLEL-------K-----------K--------H---LKQALASMSLNTQ---------PILNLEKFH 449 (1588)
T ss_pred CCcccCCCCCCcchHHH-------H-----------H--------H---HHhhHhhhccccc---------ccccccCcc
Confidence 87 6788876321110 0 0 0 1111 1112211 1111100 0
Q ss_pred hhhhhcCCCCeeecccchhhHHhhhccCCCeEEEecCCCcccCCCCCCCCCCHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q psy946 351 LLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTGDGVARAFLRAL 430 (714)
Q Consensus 351 lld~L~AP~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~~p~~dl~~LP~~~~~~Lk~~L~~~~~~d~i~~aFl~~~ 430 (714)
-.. -.|..+|-.. ++++.-|+..+..+.--..--+.+-+.|.|++|||
T Consensus 450 ~~q----~~~m~~~~~~----------------------------n~~q~~pst~~np~~yG~DvDSVDVAtRVAMVrFF 497 (1588)
T KOG3570|consen 450 EGQ----EIPLLLGRPS----------------------------NDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFF 497 (1588)
T ss_pred ccc----ccceecCCcc----------------------------ccccCCCCcccCchhccCccchhhhHHHHHHHHHh
Confidence 000 0111111111 11111221110000000000001335678899998
Q ss_pred HH--hhhcHHhhh---ccCCCCceeecHHHhhhhcCCChHHHHHHHHhhhHHHHHHHHHHhhhc
Q psy946 431 VQ--LIGGYRDAL---KFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNMLN 489 (714)
Q Consensus 431 ~~--ll~~Yr~~l---~~~~~~~~~F~~e~Fl~s~~~~~~~Fl~~f~eTQmF~~FIeerl~~~n 489 (714)
.. .|+++..+- +..+.+.+.|+..+||.++| ..-+|+++|..||+.++|-|..+..-|
T Consensus 498 NsaNvl~nF~eHTRTLRLyPRPVVafQ~~SFLrSRP-r~tqf~~~laRTQAVEyfaEw~L~PtN 560 (1588)
T KOG3570|consen 498 NSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRP-RQTPFAEKLARTQAVEYFGEWILNPTN 560 (1588)
T ss_pred hhHHHhhhHHhhhhhhhccCcceeEEeccchhhcCc-cccHHHHHHHHHHHHHHHHHhhcCcch
Confidence 54 788887774 45678899999999999998 557899999999999999999887654
No 3
>KOG1090|consensus
Probab=100.00 E-value=2.8e-36 Score=339.87 Aligned_cols=388 Identities=21% Similarity=0.280 Sum_probs=284.9
Q ss_pred CCCccEEEeCCC-CCCCchhcCcCCcccccCCccC----CcceEEEEEEecCCCCeEEEEeecCC--------CCCeEEE
Q psy946 27 KEPAWVLQKFPG-SYKDESVLKNVPKFAYPCKLEN----TSVEYYSFVLTDLDSKFTFGYCRHDP--------KSDTSMV 93 (714)
Q Consensus 27 ~~~P~Il~~yP~-~~~d~~~~~~I~~FCFP~g~~~----~~~~~FsFVLTd~~G~r~yG~C~~~p--------~~~~aic 93 (714)
...|.|+.++|+ ++.|+....+|..||-|.|..+ .++++|.=|||+++|+|+|+||+.+. +.++||+
T Consensus 28 ~~~~~v~~~~~~~~~~d~~~~~~i~~f~~p~gw~~~~~~~~~~ff~~ilt~~~~~r~~~~~ls~~e~~~~t~~~~~~~iv 107 (1732)
T KOG1090|consen 28 NALPDVLHEVQSPHTSDNIPTSSIKKFARPRGWYNQSVSSPSEFFYQILTTERGTRRIAYVLSTWEEDEKTLNFKAVSIV 107 (1732)
T ss_pred cchhHHHhhcCCCCCCCCCchhhHHHHhccccchhhcccCcchhhhhheecccCceeEEEEeehhhhhhhhhcccceEEE
Confidence 367899999998 7999999999999999999864 45788999999999999999999863 5789999
Q ss_pred EEcCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-hcCCCCCCCce-EEEEeCCc-eeeEeCCCCCCCCCCCCCCcc
Q psy946 94 IISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDI-YNANIPEYGQI-IYATSKNT-EYTCQAPNQYQLPSIPENKNL 170 (714)
Q Consensus 94 ILS~~P~~~~F~~iL~~i~~~~~~~~~~~le~~i~~l-~~~p~P~pG~~-l~~~~~~~-~~~~~~P~~~~LP~~~~~~~l 170 (714)
+||+.-+...|.++|..|+..++.+.-...+.+|..+ +.+-.|..|.. .+.....+ .+..+ | -+|....++.
T Consensus 108 lis~~~~~~~fk~~l~~i~~~~~~~~~~~~~~li~~l~~~l~~~~s~~~~~~~tl~~~~~~~l~-p---~~p~tg~~v~- 182 (1732)
T KOG1090|consen 108 LISQNFHPKAFKEILLEISNDLRTPEFSSSSELIRFLTYELVEEGSTIEIRTKTLHVELGFELI-P---ISPVTGKDVA- 182 (1732)
T ss_pred EEecccCHHHHHHHHHHHHHHhcCcccccHHHHHHHhheEEeecCCCCceEEEEeecccCceee-e---cCCCCCccHH-
Confidence 9999999999999999999888776666677777776 66666655543 33333222 22211 1 1222222222
Q ss_pred ccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccccccccCCccccccccchh
Q psy946 171 TEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEIL 250 (714)
Q Consensus 171 ~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld~leaP~PfliGi~s~~ 250 (714)
.+|..|+..|++.|+.++|.|.||+|.|+++-.||.|+.|+++|||||+|.|+||||||.+|.++|++|+||||||++++
T Consensus 183 ~lfk~lg~qnvi~ii~a~lsd~ri~~~s~~~~~ls~~~~ai~sllypf~y~h~~v~ilp~~l~evl~sptpfl~gv~s~~ 262 (1732)
T KOG1090|consen 183 MLFKMLGFQNVIKIIHALLSDCRIVLASSSLMRLSRCQNAILSLLYPFEYVHSCVTILPDSLAEVLESPTPFLIGVLSEF 262 (1732)
T ss_pred HHHHHhhhhHHHHHHHHHHhcceEeeehhHHHHHHHHHHHHHHHhcchheeeeeeeecccHHHHHhcCCCceeehhhHHH
Confidence 26778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhcccCCCEEEEecCCCcccCCCC-CCCCCCcccccccceeecCCcchhhhhhhhccccceeeecccccchhHHHHh
Q psy946 251 LDSVRRNELGDVVLLNADTNVLTTPHD-DLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQA 329 (714)
Q Consensus 251 ~~~~~~~~~~d~v~vDLD~~~i~~~~~-dl~~lP~~l~~l~~f~~L~~~nil~l~~slLlErrII~~S~~ls~Ls~~v~a 329 (714)
...+ .+|+++||||+|.|..|+. .+
T Consensus 263 ~t~~----~de~ivv~ld~g~v~vpd~~~i-------------------------------------------------- 288 (1732)
T KOG1090|consen 263 VTSF----GDENIVVYLDNGEVHVPDHAEI-------------------------------------------------- 288 (1732)
T ss_pred hhhc----CCceEEEEecCCEEecCCceee--------------------------------------------------
Confidence 8754 5699999999999998875 21
Q ss_pred hhhhccCcccccccccCCCcchhhhhcCCCCeeecccchhhHHhhhccCCCeEEEecCCCcccCCCCCCCCCCHH--HHH
Q psy946 330 ANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQD--VIA 407 (714)
Q Consensus 330 l~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~~p~~dl~~LP~~--~~~ 407 (714)
|.+|.-+.+ ++.++++ +|..=.+.. .|+ .+|+. +..
T Consensus 289 ---------------~~~~~~~~~--------------~~~~~l~-----mvlfp~l~q-------aDL-afP~p~~i~~ 326 (1732)
T KOG1090|consen 289 ---------------YKSDDYYYN--------------SLHQRLR-----MVLFPTLSQ-------ADL-AFPNPERIEV 326 (1732)
T ss_pred ---------------ecCCcHHHH--------------HHHHHHH-----HHhccccch-------hhc-CCCChhhccc
Confidence 122211111 1112222 121111111 122 13321 111
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhhhcHHhhhc---cCCCCceeecHHHhhhhcCCChHHHHHHHHhhhHHHHHHHHH
Q psy946 408 TLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALK---FHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEER 484 (714)
Q Consensus 408 ~Lk~~L~~~~~~d~i~~aFl~~~~~ll~~Yr~~l~---~~~~~~~~F~~e~Fl~s~~~~~~~Fl~~f~eTQmF~~FIeer 484 (714)
... .+ +..+|..|++.|++++.|||.|+. +++...++|++.+|+..+.-.+..|+. .+++..|+.||-+|
T Consensus 327 ~d~-~~-----DKeLRA~FirlFAqLLqGYr~cl~~~RIhp~pvitFHkaaFlG~R~L~e~~fl~-vL~sm~F~tFv~eR 399 (1732)
T KOG1090|consen 327 DDF-IL-----DKELRACFIRLFAQLLQGYRYCLLYTRIHPTPVITFHKAAFLGFRKLTEMMFLS-VLKSMYFQTFVLER 399 (1732)
T ss_pred hHH-HH-----hHHHHHHHHHHHHHHHHhhheeEEEEEecCCceEEEehhhhcchhhhHHHHHHH-HHHHHHHHHHHhhc
Confidence 110 11 457889999999999999999985 478889999999999999888888998 99999999999999
Q ss_pred HhhhcCCCCCcchhHHHHh------hhccCC--CchhHHHHHHHHHhhhc
Q psy946 485 LNMLNSGQGFTDEFEREAC------NYMDKS--SGTVKQQYKEWLRTDKE 526 (714)
Q Consensus 485 l~~~ns~~~f~D~Fe~e~~------~~~~~~--~~~~~~~y~~w~~~~~~ 526 (714)
--...+ .|.|++=.+ .-.+.. +..+.+|.++...-+-+
T Consensus 400 g~P~R~----~DlfDEl~~~~~~~~~~~~qn~t~~~~l~hiqel~~~Lyq 445 (1732)
T KOG1090|consen 400 GLPRRK----HDLFDELSCFKELDQLIFKQNSTSSESLKHIQELSCELYQ 445 (1732)
T ss_pred CCCCCc----chhHHHHHHhHHHHHHHHhhCccHHHHHHHHHHHHHHHHh
Confidence 654443 344433221 111112 23456677777555443
No 4
>KOG2080|consensus
Probab=100.00 E-value=1e-36 Score=339.71 Aligned_cols=459 Identities=20% Similarity=0.384 Sum_probs=314.4
Q ss_pred chhchheeEEEEeCCC----------CC-----CCccEEEeCCCCCCCchhc-CcCCcccccCCcc------CCcceEEE
Q psy946 10 NVKHLFECFCEVARPQ----------GK-----EPAWVLQKFPGSYKDESVL-KNVPKFAYPCKLE------NTSVEYYS 67 (714)
Q Consensus 10 ~~~~lFe~f~~V~~~~----------~~-----~~P~Il~~yP~~~~d~~~~-~~I~~FCFP~g~~------~~~~~~Fs 67 (714)
-+.++|+||+.-+.+. |+ ..-..+++||+.-+=+++- ..+.+.|.|.|.. ...+++++
T Consensus 65 ~f~r~~~~f~~~~~dl~~~~~~sr~~g~n~~~~pL~kpla~ypenvpwnPfd~~~~~ml~mP~gl~frtq~~~~Ep~FhS 144 (1295)
T KOG2080|consen 65 KFIRLFSCFLLEHQDLLCSKDLSRLMGVNESLLPLSKPLAWYPENVPWNPFDKLDFFMLCMPKGLGFRTQDDVPEPQFHS 144 (1295)
T ss_pred HHHHHHHHHHHhhhhccccccchhhhccCcccccccchhhcCccCCCCCcccccceeeeccccccceeccCCCCchhhhe
Confidence 3457888888777542 11 1226789999974433332 4688999999864 23578899
Q ss_pred EEEecCCCCeEEEEeecC----------------------------------------------C---------------
Q psy946 68 FVLTDLDSKFTFGYCRHD----------------------------------------------P--------------- 86 (714)
Q Consensus 68 FVLTd~~G~r~yG~C~~~----------------------------------------------p--------------- 86 (714)
|+.|.+||+|.||+.+.+ |
T Consensus 145 fiitredG~r~ygf~l~fyeevrsk~ic~am~tl~~m~~te~~nsl~~~s~sd~~l~ssldrsep~~v~v~g~~~~~ydi 224 (1295)
T KOG2080|consen 145 FIITREDGSRTYGFDLTFYEEVRSKQICGAMQTLYSMHNTEIYNSLEALSDSDKDLTSSLDRSEPTEVVVLGRVKNSYDI 224 (1295)
T ss_pred eeEEcccCccccCcceeechhhchhhhhhHHHHHHHHHHHHhhhhhhcCccchhhccCccccCCCceeeeechhhhcccc
Confidence 999999999999998753 0
Q ss_pred -----CCCeEEEEEcCcccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHH-hcCCCCCCCceEEEEeCCceeeEeCCCC
Q psy946 87 -----KSDTSMVIISLLPWHESFYKLLNCVVEITN--GSSPQLLWTFLEDI-YNANIPEYGQIIYATSKNTEYTCQAPNQ 158 (714)
Q Consensus 87 -----~~~~aicILS~~P~~~~F~~iL~~i~~~~~--~~~~~~le~~i~~l-~~~p~P~pG~~l~~~~~~~~~~~~~P~~ 158 (714)
++.++||++...|+-...+.+|..+++... +..+.++|.++.++ |++++|+||..+.+...-+.++|++|..
T Consensus 225 ~rd~lyvaKsi~li~~lp~~~A~~~fL~~lyr~~trq~~~plpLEsyi~Nilyev~lp~pgrsl~vy~~~~~ii~q~~~a 304 (1295)
T KOG2080|consen 225 SRDTLYVAKSICLITPLPFMSACSEFLSQLYRAVTRQQPPPLPLESYIYNILYEVPLPPPGRSLKVYGVYDPIICQRPFA 304 (1295)
T ss_pred ccchHHhhhheeecccchHHHHHHHHHHHHHhccCCCCCCCcCHHHHHhhhheecccCCCCceeeEEecCCcccccCCCC
Confidence 245899999999999999999999998653 34667999999987 9999999999999988877888999888
Q ss_pred CCCCCCCCCCcccc-ccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeeccccccccccc
Q psy946 159 YQLPSIPENKNLTE-YCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLT 237 (714)
Q Consensus 159 ~~LP~~~~~~~l~~-~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld~le 237 (714)
..+|.. +..+.+ |.-++++|++++|+|+|+|.+|++.|.++..|..+.+++.+||+||+|||+|+||||.+++++++
T Consensus 305 ~elpL~--dfplR~~F~~lgVenviql~tCvLle~qill~s~dyqrlm~v~e~itsllfpf~w~hvy~pilpa~l~hFld 382 (1295)
T KOG2080|consen 305 DELPLD--DFPLREYFELLGVENVIQLFTCVLLENQILLYSQDYQRLMTVAECITSLLFPFQWQHVYVPILPASLLHFLD 382 (1295)
T ss_pred cccccc--cHhHHHHHHHhcchHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhhhhccccccccccccccHHHHHHHhc
Confidence 888764 233444 44689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccchhhhhhhcccCCCEEEEecCCCcccCCCCCCCCCCcccccccceeecCCcchhhhhhhhccccce----
Q psy946 238 APMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRI---- 313 (714)
Q Consensus 238 aP~PfliGi~s~~~~~~~~~~~~d~v~vDLD~~~i~~~~~dl~~lP~~l~~l~~f~~L~~~nil~l~~slLlErrI---- 313 (714)
||+||+||.|++.+..++-..-...++||+|+..|..|+ ++|.+|+++.+--+. . .++.....|+.+
T Consensus 383 apvp~lmGlhs~drs~~el~~Ea~lcFvdid~~~iqlpe-elp~fp~klef~~e~-----s---~il~kf~~~~~~p~EG 453 (1295)
T KOG2080|consen 383 APVPYLMGLHSDDRSKLELPQEANLCFVDIDNHFIQLPE-ELPQFPNKLEFQQET-----S---EILSKFGSQWEIPPEG 453 (1295)
T ss_pred CCcceecccCcccHhhhcCcchhhhhhhhhhhcccCCch-hcccchhHHHHHHHH-----H---HHHHHhhccccCCCcc
Confidence 999999999999887764333457999999999988776 588888876543321 1 222333323322
Q ss_pred -eeecccccchhHHHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeecccchhhHHh-------------hhccC-
Q psy946 314 -VITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSV-------------RRNEL- 378 (714)
Q Consensus 314 -I~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiGv~~~~~~~~-------------~~~~~- 378 (714)
+.++..+|.+.... ..++..- . .|=.+|--++++-.-...+.. ++.+.
T Consensus 454 s~~~d~~iS~~k~l~--g~~lvr~----~-----------t~~~tp~g~vat~~l~s~~~~k~d~vi~~~~~La~r~gVr 516 (1295)
T KOG2080|consen 454 SLHCDESISKLKDLL--GVSLVRD----K-----------TYEATPNGNVATEDLISYELLKTDEVIARLQALAKRTGVR 516 (1295)
T ss_pred ccchhhhHHHHHhhh--hhhhhcC----c-----------ccccCCCCccccCchhhcccccccchhhhHHHHHhccCcc
Confidence 33444433333211 0111100 0 011111113333211111110 01110
Q ss_pred --CCeEEEecCCCc-----ccCCCCCCCCCCHHH--HHHHH-----HHHhcCCCchHHHHHHHHHHHHhhhcHHhhhccC
Q psy946 379 --GDVVLLNADTNV-----LTTPHDDLNTLPQDV--IATLK-----KQLRNKTTGDGVARAFLRALVQLIGGYRDALKFH 444 (714)
Q Consensus 379 --~dvvivDLD~~~-----i~~p~~dl~~LP~~~--~~~Lk-----~~L~~~~~~d~i~~aFl~~~~~ll~~Yr~~l~~~ 444 (714)
+.--++.|.+.- ...+.+. ..|... .+.+| +.++....+..++++|++.|.+++..|..+++..
T Consensus 517 ~eg~~p~~~l~tt~~~~~~~~sp~~~--~~~~~~~r~k~qKl~~~~~~~qd~r~n~~~revflnrf~~mf~~ye~fvi~~ 594 (1295)
T KOG2080|consen 517 YEGAWPVHQLNTTLLDGANLISPAPS--PWRQRYPRLKDQKLGCNENELQDYRLNSQYREVFLNRFTQMFADYEQFVIQP 594 (1295)
T ss_pred ccCCCcceeccccccccccccCcCCC--ccccccchhhhhccCcccchhheecchhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 000111111111 1111100 011111 11111 1111112266899999999999999999998642
Q ss_pred ----------CCCceeecHHHhhhhcCCChHHHHHHHHhhhHHHHHHHHHHhhh-cCCCCCcchhHHHH
Q psy946 445 ----------QGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNML-NSGQGFTDEFEREA 502 (714)
Q Consensus 445 ----------~~~~~~F~~e~Fl~s~~~~~~~Fl~~f~eTQmF~~FIeerl~~~-ns~~~f~D~Fe~e~ 502 (714)
.+++..||+.+|++.++....+|+..|+++|||..|||..+... .+|. .|.+.+
T Consensus 595 ~Q~~eew~tnre~mqnfDK~s~~sdQp~h~~afls~fle~qlfasfidnli~~~w~~~l----~fd~rv 659 (1295)
T KOG2080|consen 595 QQDLEEWKTNREQMQNFDKMSFLSDQPEHLLAFLSRFLENQLFASFIDNLIECIWAHGL----LFDQRV 659 (1295)
T ss_pred HHHHHHHHhhHHHHhhhhhhhhcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----chHHHH
Confidence 23466799999999999999999999999999999999887654 4443 455554
No 5
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=100.00 E-value=6.8e-34 Score=283.03 Aligned_cols=180 Identities=33% Similarity=0.555 Sum_probs=155.1
Q ss_pred CCeEEEEEcCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCCCceEEEEeCCc--eeeEeCCCCCCCCCCC
Q psy946 88 SDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNT--EYTCQAPNQYQLPSIP 165 (714)
Q Consensus 88 ~~~aicILS~~P~~~~F~~iL~~i~~~~~~~~~~~le~~i~~l~~~p~P~pG~~l~~~~~~~--~~~~~~P~~~~LP~~~ 165 (714)
.++|+||+||+||+++|+++|+.++..+.......++.+. .++..+.|.||+++.....+. ...+++|....+|...
T Consensus 1 ~p~~icilS~~P~~~~f~~~L~~l~~~~~~~~~~~~e~~~-~~~~~p~P~pg~~~~~~~~~~~~~~~~~~p~~~~lp~~~ 79 (183)
T smart00799 1 APKCICILSRLPFFELFRKILNELYRLLPSSSNLPLELLI-SLLLYPVPPPGGSLVLVSLGPGDLIELQRPLDSSLPLID 79 (183)
T ss_pred CCeEEEEEeCCcHHHHHHHHHHHHHHHHccCccchHHHHH-HHhCCCCCcCCCeEEEEEcCCCCcEEEECCCCCCCCCCC
Confidence 4789999999999999999999999988766666666544 445689999999966543322 3567788887888653
Q ss_pred CCCccc-cccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccccccccCCccccc
Q psy946 166 ENKNLT-EYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMV 244 (714)
Q Consensus 166 ~~~~l~-~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld~leaP~Pfli 244 (714)
.++. .|.++++++++.+|+++|+||||||+|+|++.+|.+++++.+||+||+|+|+|||+||.+++|+++||+|||+
T Consensus 80 --~~~~~lf~~l~~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf~w~~~~iP~lp~~l~~~l~aP~P~ii 157 (183)
T smart00799 80 --FSLHELFECLGVENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPFVWQHIYIPILPASLLDVLSAPTPFII 157 (183)
T ss_pred --ccHHHHHHhCCHHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCccCCceEEEECCHHHHHHhcCCCCEEE
Confidence 3343 4678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhcccCCCEEEEecCCC
Q psy946 245 GLPEILLDSVRRNELGDVVLLNADTN 270 (714)
Q Consensus 245 Gi~s~~~~~~~~~~~~d~v~vDLD~~ 270 (714)
|++++.++.+.....+|+++||||+|
T Consensus 158 Gv~~~~~~~~~~~~~~~vv~vDlD~~ 183 (183)
T smart00799 158 GVHSSYFEEVKELPDEDVVVVDLDTG 183 (183)
T ss_pred EechhHhHHhhccCCCCEEEEECCCC
Confidence 99999998887666678999999997
No 6
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha. DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.
Probab=100.00 E-value=3.1e-34 Score=285.82 Aligned_cols=181 Identities=31% Similarity=0.623 Sum_probs=124.6
Q ss_pred CCCeEEEEEcCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHH-HhcCCCCCCCceEEEE--eCCceeeEeCCCCCCCCC
Q psy946 87 KSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLED-IYNANIPEYGQIIYAT--SKNTEYTCQAPNQYQLPS 163 (714)
Q Consensus 87 ~~~~aicILS~~P~~~~F~~iL~~i~~~~~~~~~~~le~~i~~-l~~~p~P~pG~~l~~~--~~~~~~~~~~P~~~~LP~ 163 (714)
+.|+|+|++||+||+++|+++|+.++..........+++++.+ ++..+.|.+|..+.+. ..+..+.+..|....+|.
T Consensus 1 y~p~~~clvS~~p~~~~f~~~L~~i~~~~~~~~~~~l~~~i~~~~~~~~~P~~g~~~~~~~~~~~~~~~~~~p~~~~lp~ 80 (185)
T PF02141_consen 1 YVPKAICLVSRYPFFDLFREILKIIYNLYKSSRINPLEQFISNLLYSIPLPPPGSTIVFFSPFKNEKIIFQRPSNNDLPL 80 (185)
T ss_dssp ----EEEEEESS--HHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHS----TT-B--------------B---SSS---
T ss_pred CCceEEEEECCCcHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCCCcceeeecccccccccccCCCccCCCc
Confidence 3689999999999999999999999998877666899999999 6889999999987763 334456667777777765
Q ss_pred CCCCCcc-ccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccccccccCCccc
Q psy946 164 IPENKNL-TEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPY 242 (714)
Q Consensus 164 ~~~~~~l-~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld~leaP~Pf 242 (714)
.+.++ .+|.++++++++++++++|+||||+|+|+|++.+|.|++|+.+|||||+|+|+|||+||.+++++++||+||
T Consensus 81 --~~~~~~~lf~~l~~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~Pf~w~~~~ip~LP~~l~~~l~aP~P~ 158 (185)
T PF02141_consen 81 --SDFSLSPLFSCLSIDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYPFQWQHVYIPVLPPSLLDYLEAPTPF 158 (185)
T ss_dssp --TSHHHHHHHHHS-HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTTS---SEEESS--GGGGGGGG-SS-E
T ss_pred --cccchhHHHhcCCHHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccCcccCceEEeecCHHHHhhcCCCCCE
Confidence 22233 357789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhhhcccCCCEEEEecCCC
Q psy946 243 MVGLPEILLDSVRRNELGDVVLLNADTN 270 (714)
Q Consensus 243 liGi~s~~~~~~~~~~~~d~v~vDLD~~ 270 (714)
|+|++++..+ ....+.+|+++||||+|
T Consensus 159 iiGv~~~~~~-~~~~~~~~~v~VDLD~n 185 (185)
T PF02141_consen 159 IIGVHSSFFE-ILIDPPDDVVIVDLDTN 185 (185)
T ss_dssp EEEEECCCHH-HHCS---S-EEEETTTT
T ss_pred EEEEechhhh-hhcCCCCCEEEEECCCC
Confidence 9999999888 44567899999999997
No 7
>KOG2127|consensus
Probab=99.95 E-value=2.2e-28 Score=285.35 Aligned_cols=227 Identities=26% Similarity=0.439 Sum_probs=189.9
Q ss_pred CCCCCccc-ccccceeecCCcchhhhhhhhccccceeeecccccchhHHHHhhhhhccCcccccccccCCCcchhhhhcC
Q psy946 279 LNTLPQDV-KNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTA 357 (714)
Q Consensus 279 l~~lP~~l-~~l~~f~~L~~~nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~A 357 (714)
.+.+|.+- .++..+.+++++++|+++.++|+|.||+|+|.....|+++++++.++++||+|||+|||++|..|+|+|+|
T Consensus 13 ds~lp~~~a~~~~~l~~l~~e~~l~~ll~~lteqkil~hslr~~~lt~v~e~~~s~~fp~~wq~pyip~~pl~la~vl~a 92 (1020)
T KOG2127|consen 13 DSPLPLSGADLHLLLQCLGPENVLQLLLLALTEQKILIHSLRPALLTAVAEAFVALLFPFHWQCPYIPLCPLGLADVLHA 92 (1020)
T ss_pred CCCCCcCcchHHHHHHhhChHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcccceecCCccccccchhcccccC
Confidence 34555543 33345568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeecccchhhHHhhhccCCCeEEEecCCCcccCCCC----CCCCCCHHHHHHHHHHHhc-------C--CC------
Q psy946 358 PMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHD----DLNTLPQDVIATLKKQLRN-------K--TT------ 418 (714)
Q Consensus 358 P~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~~p~~----dl~~LP~~~~~~Lk~~L~~-------~--~~------ 418 (714)
|+|||+|||+.+++.. .+.+||+++|+|+|+|..... +.+.+|......|++++.+ . +.
T Consensus 93 P~pf~~g~~s~~f~~~--~pp~dv~~~dldt~~i~~~~~~~~~s~~~lp~~~a~~l~~~l~~l~~~l~~~y~s~~~~~~l 170 (1020)
T KOG2127|consen 93 PLPFLMGVDSRYFELY--DPPDDVTCIDLDTNTISYSESTDDLSPPDLPKRAAKTLIQTLTSLQLHLDLHYASTNSSTDL 170 (1020)
T ss_pred CcccccCCChhhhhcc--CCCccceEEecCCCceeeeeccccCCcccCchhHHHHHHHHHHHHHhhhhcccccccccccc
Confidence 9999999999999988 578999999999999976532 2345676665566555421 0 00
Q ss_pred --------------chHHHHHHHHHHHHhhhcHHhhhccCCCCceeecHHHhhhhcCCChHHHHHHHHhhhHHHHHHHHH
Q psy946 419 --------------GDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEER 484 (714)
Q Consensus 419 --------------~d~i~~aFl~~~~~ll~~Yr~~l~~~~~~~~~F~~e~Fl~s~~~~~~~Fl~~f~eTQmF~~FIeer 484 (714)
+..|+++|++++++++.+||+|++. .-..++.++||+++...+++|++.+++||||.+||++|
T Consensus 171 ~~~~~~~~l~~~~le~~iq~afl~f~asil~g~r~~l~~---~a~~~~~~~fL~sR~~s~~~fy~~~~~Tqmf~~fieer 247 (1020)
T KOG2127|consen 171 DFGIADRRLRRQKLECEIQQAFLQFMASILRGYRNFLRE---GATDVNLEGFLRSRDRSSHKFYKQVLKTQMFHRFIEER 247 (1020)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc---ccccCChHHHHhhcchhhhhHHHhcchhHHHHHHHHHH
Confidence 2257889999999999999999982 23356699999999999999999999999999999999
Q ss_pred Hhhh--cCCCCCcchhHHHHhhhccCCC
Q psy946 485 LNML--NSGQGFTDEFEREACNYMDKSS 510 (714)
Q Consensus 485 l~~~--ns~~~f~D~Fe~e~~~~~~~~~ 510 (714)
+... |.++.|+|.+-+++..+.+..+
T Consensus 248 s~~s~~~~~~~ffd~~~ekv~~~~e~p~ 275 (1020)
T KOG2127|consen 248 SFVSDDNFALMFFDTCSEKVNGMLESPR 275 (1020)
T ss_pred hcccchHhHhhhHHHHHHHHcccccCCc
Confidence 9765 5568899999999988776543
No 8
>KOG3569|consensus
Probab=99.94 E-value=1.6e-27 Score=249.54 Aligned_cols=112 Identities=46% Similarity=0.914 Sum_probs=107.7
Q ss_pred hhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccccccccCCccccccccchhhhhhhcc
Q psy946 178 PVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRN 257 (714)
Q Consensus 178 ~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld~leaP~PfliGi~s~~~~~~~~~ 257 (714)
+.++++||++||+||||||+++.++.||+|++|..+|||||.|||+|||+||.+|+|+++|||||+||+|++..+.+++.
T Consensus 187 ~~qml~ifASlL~ERRIifia~KLStLssCiHa~~ALLYPm~WqH~yIPvLPpsLlD~vCaPmPyLIGv~~s~lerv~~~ 266 (425)
T KOG3569|consen 187 VRQMLQIFASLLLERRIIFIASKLSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDYVCAPMPYLIGVHSSLLERVREL 266 (425)
T ss_pred HHHHHHHHHHHHhhceeEeeccchhHHHHHHHHHHHHhhhhhhheeeeccCCHHHHhHhcCCcceeecchHHHHHHHhhC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCCcccCCCCCCCCCCcccccc
Q psy946 258 ELGDVVLLNADTNVLTTPHDDLNTLPQDVKNL 289 (714)
Q Consensus 258 ~~~d~v~vDLD~~~i~~~~~dl~~lP~~l~~l 289 (714)
+.+||++||+|+|+++++.+|...+|+++-+.
T Consensus 267 ~leeVv~vnld~~tl~~~fdD~~~LP~~v~~~ 298 (425)
T KOG3569|consen 267 PLEEVVMVNLDENTLESPFDDVQALPPKVQSA 298 (425)
T ss_pred CccceEEEEccCCeeeccccchhhCCHHHHHH
Confidence 99999999999999999999999999975443
No 9
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha. DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.
Probab=99.88 E-value=8e-24 Score=211.00 Aligned_cols=104 Identities=38% Similarity=0.768 Sum_probs=82.9
Q ss_pred ccccccceeecCCcchhhhhhhhccccceeeecccccchhHHHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeec
Q psy946 285 DVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVG 364 (714)
Q Consensus 285 ~l~~l~~f~~L~~~nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiG 364 (714)
+......|.++++++++++++++|+||||||+|++++.+|.|++|+.+|||||+|+|+|||+||.+++++|+||+|||+|
T Consensus 82 ~~~~~~lf~~l~~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~Pf~w~~~~ip~LP~~l~~~l~aP~P~iiG 161 (185)
T PF02141_consen 82 DFSLSPLFSCLSIDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYPFQWQHVYIPVLPPSLLDYLEAPTPFIIG 161 (185)
T ss_dssp SHHHHHHHHHS-HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTTS---SEEESS--GGGGGGGG-SS-EEEE
T ss_pred ccchhHHHhcCCHHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccCcccCceEEeecCHHHHhhcCCCCCEEEE
Confidence 44445577799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhccCCCeEEEecCCC
Q psy946 365 LPEILLDSVRRNELGDVVLLNADTN 389 (714)
Q Consensus 365 v~~~~~~~~~~~~~~dvvivDLD~~ 389 (714)
++++..+ ....+.+|+++||||+|
T Consensus 162 v~~~~~~-~~~~~~~~~v~VDLD~n 185 (185)
T PF02141_consen 162 VHSSFFE-ILIDPPDDVVIVDLDTN 185 (185)
T ss_dssp EECCCHH-HHCS---S-EEEETTTT
T ss_pred Eechhhh-hhcCCCCCEEEEECCCC
Confidence 9999888 44456789999999987
No 10
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.88 E-value=3e-23 Score=206.75 Aligned_cols=104 Identities=38% Similarity=0.708 Sum_probs=97.4
Q ss_pred cccccceeecCCcchhhhhhhhccccceeeecccccchhHHHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeecc
Q psy946 286 VKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGL 365 (714)
Q Consensus 286 l~~l~~f~~L~~~nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiGv 365 (714)
......|++++++|++.+++++|+||||||+|++++.+|.+++++.+||+||+|+|+|||+||.+++|+|+||+|||+|+
T Consensus 80 ~~~~~lf~~l~~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf~w~~~~iP~lp~~l~~~l~aP~P~iiGv 159 (183)
T smart00799 80 FSLHELFECLGVENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPFVWQHIYIPILPASLLDVLSAPTPFIIGV 159 (183)
T ss_pred ccHHHHHHhCCHHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCccCCceEEEECCHHHHHHhcCCCCEEEEe
Confidence 44555677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhhhccCCCeEEEecCCC
Q psy946 366 PEILLDSVRRNELGDVVLLNADTN 389 (714)
Q Consensus 366 ~~~~~~~~~~~~~~dvvivDLD~~ 389 (714)
+++..+.+.+...+|+++||||+|
T Consensus 160 ~~~~~~~~~~~~~~~vv~vDlD~~ 183 (183)
T smart00799 160 HSSYFEEVKELPDEDVVVVDLDTG 183 (183)
T ss_pred chhHhHHhhccCCCCEEEEECCCC
Confidence 999999887666678999999986
No 11
>KOG2080|consensus
Probab=99.78 E-value=1e-19 Score=204.64 Aligned_cols=251 Identities=21% Similarity=0.417 Sum_probs=186.9
Q ss_pred eeeEeCCCCCCCCCCCCCCccccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeeccc
Q psy946 150 EYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMP 229 (714)
Q Consensus 150 ~~~~~~P~~~~LP~~~~~~~l~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP 229 (714)
....++|....+|..... ....+..+..+..+.++.+-++|.+.+.+|..++.+.-..+.+..|=.||.|+-.++|..|
T Consensus 36 ~~~vq~P~~~~~~f~~~s-~~s~~~~~pde~f~r~~~~f~~~~~dl~~~~~~sr~~g~n~~~~pL~kpla~ypenvpwnP 114 (1295)
T KOG2080|consen 36 TLVVQRPGPKELPFFDDS-IGSIFDYLPDEKFIRLFSCFLLEHQDLLCSKDLSRLMGVNESLLPLSKPLAWYPENVPWNP 114 (1295)
T ss_pred cceeeCCCCccccceecc-ccchhccCccHHHHHHHHHHHHhhhhccccccchhhhccCcccccccchhhcCccCCCCCc
Confidence 344567777676665321 1233444556678899999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccccccccchhhhhhhcccCCCEEEEecCCCcccCCCC--------------------------------
Q psy946 230 RDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHD-------------------------------- 277 (714)
Q Consensus 230 ~~Lld~leaP~PfliGi~s~~~~~~~~~~~~d~v~vDLD~~~i~~~~~-------------------------------- 277 (714)
-+..++..+|+|+-+|..+..... .+.-..++++.|+|.=+.+.+
T Consensus 115 fd~~~~~ml~mP~gl~frtq~~~~---Ep~FhSfiitredG~r~ygf~l~fyeevrsk~ic~am~tl~~m~~te~~nsl~ 191 (1295)
T KOG2080|consen 115 FDKLDFFMLCMPKGLGFRTQDDVP---EPQFHSFIITREDGSRTYGFDLTFYEEVRSKQICGAMQTLYSMHNTEIYNSLE 191 (1295)
T ss_pred ccccceeeeccccccceeccCCCC---chhhheeeEEcccCccccCcceeechhhchhhhhhHHHHHHHHHHHHhhhhhh
Confidence 999999999999999987531100 001112233333322111000
Q ss_pred ----------------------------------------------------------------------CCCCCC----
Q psy946 278 ----------------------------------------------------------------------DLNTLP---- 283 (714)
Q Consensus 278 ----------------------------------------------------------------------dl~~lP---- 283 (714)
..+.||
T Consensus 192 ~~s~sd~~l~ssldrsep~~v~v~g~~~~~ydi~rd~lyvaKsi~li~~lp~~~A~~~fL~~lyr~~trq~~~plpLEsy 271 (1295)
T KOG2080|consen 192 ALSDSDKDLTSSLDRSEPTEVVVLGRVKNSYDISRDTLYVAKSICLITPLPFMSACSEFLSQLYRAVTRQQPPPLPLESY 271 (1295)
T ss_pred cCccchhhccCccccCCCceeeeechhhhccccccchHHhhhheeecccchHHHHHHHHHHHHHhccCCCCCCCcCHHHH
Confidence 000010
Q ss_pred -----------c---c------------------------cccccceeecCCcchhhhhhhhccccceeeecccccchhH
Q psy946 284 -----------Q---D------------------------VKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSA 325 (714)
Q Consensus 284 -----------~---~------------------------l~~l~~f~~L~~~nil~l~~slLlErrII~~S~~ls~Ls~ 325 (714)
+ . ......|..++++|++++|.|+|+|-+|++.|.++.+|--
T Consensus 272 i~Nilyev~lp~pgrsl~vy~~~~~ii~q~~~a~elpL~dfplR~~F~~lgVenviql~tCvLle~qill~s~dyqrlm~ 351 (1295)
T KOG2080|consen 272 IYNILYEVPLPPPGRSLKVYGVYDPIICQRPFADELPLDDFPLREYFELLGVENVIQLFTCVLLENQILLYSQDYQRLMT 351 (1295)
T ss_pred HhhhheecccCCCCceeeEEecCCcccccCCCCcccccccHhHHHHHHHhcchHHHHHHHHHHhhhHHHhhhhhHHHHHH
Confidence 0 0 0000224478999999999999999999999999999999
Q ss_pred HHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeecccchhhHHhhhccCCCeEEEecCCCcccCCCCCCCCCCHHH
Q psy946 326 CVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDV 405 (714)
Q Consensus 326 ~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~~p~~dl~~LP~~~ 405 (714)
+.+++.+||+||+|||+|+||||.+++-+|.||+|||+|.|+.-.+..+-..-....+||+|+..|.-| ++++.+|.++
T Consensus 352 v~e~itsllfpf~w~hvy~pilpa~l~hFldapvp~lmGlhs~drs~~el~~Ea~lcFvdid~~~iqlp-eelp~fp~kl 430 (1295)
T KOG2080|consen 352 VAECITSLLFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSDDRSKLELPQEANLCFVDIDNHFIQLP-EELPQFPNKL 430 (1295)
T ss_pred HHhhhhhhccccccccccccccHHHHHHHhcCCcceecccCcccHhhhcCcchhhhhhhhhhhcccCCc-hhcccchhHH
Confidence 999999999999999999999999999999999999999999866655422223667899999888776 4677788753
No 12
>KOG2127|consensus
Probab=99.69 E-value=7.5e-18 Score=197.80 Aligned_cols=127 Identities=28% Similarity=0.488 Sum_probs=110.6
Q ss_pred CCCCCCCCCCCCCCccccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccccc
Q psy946 155 APNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLD 234 (714)
Q Consensus 155 ~P~~~~LP~~~~~~~l~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld 234 (714)
.|.+.++|.-. ......+.+++++++++++.++|+|+||+|.|..+.+|+.+++|+.+++|||+|||+|||++|..|+|
T Consensus 10 ~~~ds~lp~~~-a~~~~~l~~l~~e~~l~~ll~~lteqkil~hslr~~~lt~v~e~~~s~~fp~~wq~pyip~~pl~la~ 88 (1020)
T KOG2127|consen 10 QPADSPLPLSG-ADLHLLLQCLGPENVLQLLLLALTEQKILIHSLRPALLTAVAEAFVALLFPFHWQCPYIPLCPLGLAD 88 (1020)
T ss_pred CccCCCCCcCc-chHHHHHHhhChHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcccceecCCccccccchhcc
Confidence 35555666432 22233567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccccccchhhhhhhcccCCCEEEEecCCCcccCCCC----CCCCCCc
Q psy946 235 YLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHD----DLNTLPQ 284 (714)
Q Consensus 235 ~leaP~PfliGi~s~~~~~~~~~~~~d~v~vDLD~~~i~~~~~----dl~~lP~ 284 (714)
+++||+|||+|+++.+++.. .+++|++++|||+|.|+...+ +.+.+|.
T Consensus 89 vl~aP~pf~~g~~s~~f~~~--~pp~dv~~~dldt~~i~~~~~~~~~s~~~lp~ 140 (1020)
T KOG2127|consen 89 VLHAPLPFLMGVDSRYFELY--DPPDDVTCIDLDTNTISYSESTDDLSPPDLPK 140 (1020)
T ss_pred cccCCcccccCCChhhhhcc--CCCccceEEecCCCceeeeeccccCCcccCch
Confidence 99999999999999999987 899999999999999999866 3444454
No 13
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.64 E-value=4.9e-16 Score=137.16 Aligned_cols=74 Identities=30% Similarity=0.584 Sum_probs=65.2
Q ss_pred hchheeEEEEeCCCC------CCCccEEEeCCC-CCCCchhcCcCCcccccCCccC------CcceEEEEEEecCCCCeE
Q psy946 12 KHLFECFCEVARPQG------KEPAWVLQKFPG-SYKDESVLKNVPKFAYPCKLEN------TSVEYYSFVLTDLDSKFT 78 (714)
Q Consensus 12 ~~lFe~f~~V~~~~~------~~~P~Il~~yP~-~~~d~~~~~~I~~FCFP~g~~~------~~~~~FsFVLTd~~G~r~ 78 (714)
++|||||++||.+.. .+.|+|+++||+ ++++...+++|+.||||+|... ..+++|+|||||+||+|+
T Consensus 2 ~rl~d~f~vvg~~~~~~~~~~~~~p~il~~yP~~~~~~~~~~~~i~~FCfP~G~~~~~~~~~~~~~~f~FvLT~~dG~r~ 81 (89)
T smart00800 2 SRLFDYFVVVGLDSDTGPLGRSYKPEILQRYPEKDEEDFPLPDSIPLFCFPEGLLFVTQKSSKDPQFFSFVLTDIDGSRR 81 (89)
T ss_pred CcceeEEEEEeCCCCCCCcCcccceEEEeECCCCCCccCCCccCCCeeECCCCeEeecccCCCCCcEEEEEEECCCCCEE
Confidence 689999999998653 478999999998 6888888999999999999753 346899999999999999
Q ss_pred EEEeecC
Q psy946 79 FGYCRHD 85 (714)
Q Consensus 79 yG~C~~~ 85 (714)
||+|+++
T Consensus 82 yG~Cl~f 88 (89)
T smart00800 82 YGFCRRF 88 (89)
T ss_pred EEEEEEe
Confidence 9999974
No 14
>KOG3570|consensus
Probab=99.59 E-value=8.5e-16 Score=173.48 Aligned_cols=126 Identities=28% Similarity=0.450 Sum_probs=109.8
Q ss_pred ceeecCCcchhhhhhhhccccceeeecccccchhHHHHhhhhhccCcccccccccCCCcch---hhhhcCCCCeeecccc
Q psy946 291 EYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDL---LDYLTAPMPYMVGLPE 367 (714)
Q Consensus 291 ~f~~L~~~nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~l---ld~L~AP~PfiiGv~~ 367 (714)
-|..|+++..+++++++|+|.||+|.|+++..|++||+|+.+||||+.|..+.||+||..| ...|.||+||||||+.
T Consensus 300 PlElLGvd~cL~VlT~imlE~Kvv~QSRdYNAlSMsvmafVamlYPLEYMFPVIPLLPtcm~sAEQLLLAPTPfiIGVPa 379 (1588)
T KOG3570|consen 300 PLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPA 379 (1588)
T ss_pred cHHHhhHHHHHHHHHHHHHhceeeeeeccccHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHhcCCCCeEeccch
Confidence 3447899999999999999999999999999999999999999999999999999999976 4699999999999999
Q ss_pred hhhHHhh-hccCCCeEEEecCCCcccCCCC--CCCCCCHHHHHHHHHHHhcC
Q psy946 368 ILLDSVR-RNELGDVVLLNADTNVLTTPHD--DLNTLPQDVIATLKKQLRNK 416 (714)
Q Consensus 368 ~~~~~~~-~~~~~dvvivDLD~~~i~~p~~--dl~~LP~~~~~~Lk~~L~~~ 416 (714)
+++---. ..-.+||++||||+|.+..|.+ .++.||+.-...||++|++.
T Consensus 380 SFf~ykk~f~lPdDvwlVDLDsn~l~~Pt~~e~iP~LPEPe~t~LK~hLKqa 431 (1588)
T KOG3570|consen 380 SFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQA 431 (1588)
T ss_pred HHhhhhhhccCCCceEEEecCCCceeCCCCcccCCCCCCcchHHHHHHHHhh
Confidence 9753322 2235799999999999998865 67889998777888888754
No 15
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=99.51 E-value=2e-13 Score=149.21 Aligned_cols=241 Identities=23% Similarity=0.354 Sum_probs=167.1
Q ss_pred eeEEEEeCCCCCCCccEEEeCCCCCC----CchhcCcCCcccccCCccCCcceEEEEEEe-----cCCCCeEEEE-eecC
Q psy946 16 ECFCEVARPQGKEPAWVLQKFPGSYK----DESVLKNVPKFAYPCKLENTSVEYYSFVLT-----DLDSKFTFGY-CRHD 85 (714)
Q Consensus 16 e~f~~V~~~~~~~~P~Il~~yP~~~~----d~~~~~~I~~FCFP~g~~~~~~~~FsFVLT-----d~~G~r~yG~-C~~~ 85 (714)
-++|+|+.++.. .|+|.+.||++.. .+..-+.||..|+|||.+.....+..|.|- ..+....||+ |.|.
T Consensus 2 ~~i~vV~Fhh~~-G~~vE~~ypp~~~~~~~~~~~~~~LpflAlPDg~h~~~ed~~yF~l~~~~~~~~~~~~lfGisc~RQ 80 (379)
T PF09794_consen 2 LCICVVGFHHER-GPEVEYWYPPDSSDDPLSPQEWSNLPFLALPDGAHNSEEDFSYFTLPYDASLNRDATTLFGISCFRQ 80 (379)
T ss_pred eEEEEEeccccc-CCeEEEEeCCCCCccccchhhHhhCCccccCCccccCCCceEEEEeccCCCCCCCCceeeceeeHhh
Confidence 378999998764 6779999995322 222347899999999998876665557776 4455788996 4442
Q ss_pred ---------------CCCCeEEEEEcCcccHHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHhcCCCCCCCceEEEEe
Q psy946 86 ---------------PKSDTSMVIISLLPWHESFYKLLNCVVEITNGS----SPQLLWTFLEDIYNANIPEYGQIIYATS 146 (714)
Q Consensus 86 ---------------p~~~~aicILS~~P~~~~F~~iL~~i~~~~~~~----~~~~le~~i~~l~~~p~P~pG~~l~~~~ 146 (714)
.+.+||+|+||+.|+|..|++.|..+...+... ...-++.+.+++...-....++.+.
T Consensus 81 i~~~~L~~~~~dvtRs~vQKsVvViS~~P~fg~~~~kL~~vt~ayF~q~dF~~~~iL~~~~~~L~~~~~~~~~~~~~--- 157 (379)
T PF09794_consen 81 IKSSDLKNRDPDVTRSTVQKSVVVISRLPFFGLIKEKLSIVTPAYFEQGDFSDTEILEDFYENLNNSFKSKNGESLQ--- 157 (379)
T ss_pred cCHHHhccCCCcccchheEEEEEEEECCCcHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhcccccccc---
Confidence 357899999999999999999999998766432 2355666666664332211111110
Q ss_pred CCceeeEeCCCCCCCCCCCCCCcccc-ccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhc----cccc-
Q psy946 147 KNTEYTCQAPNQYQLPSIPENKNLTE-YCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIY----PMCW- 220 (714)
Q Consensus 147 ~~~~~~~~~P~~~~LP~~~~~~~l~~-~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~----PF~W- 220 (714)
....| .+-++.. +..+. .+++.+|.++|+|+||+|.|++.+.++.++.|+.||+= .++=
T Consensus 158 ~~~~y--------------~glslr~lv~~fr-~~~LvL~K~LLLekKIlfy~s~ve~l~~~~~sLiSLiPgli~~L~d~ 222 (379)
T PF09794_consen 158 ESDLY--------------VGLSLRELVHNFR-HKTLVLFKALLLEKKILFYGSPVERLCNFQLSLISLIPGLINNLQDS 222 (379)
T ss_pred chhhh--------------cCCCHHHHHHHHh-HHHHHHHHHHHhcCCeEEEcCCHHHHHHHHHHHHHHhHHHHHhHhhc
Confidence 00000 0011221 11222 46889999999999999999999999999999999871 1210
Q ss_pred -----------------------------------------cceeeecccccccccccCC--ccccccccchhhhhhhcc
Q psy946 221 -----------------------------------------QHIFIPLMPRDLLDYLTAP--MPYMVGLPEILLDSVRRN 257 (714)
Q Consensus 221 -----------------------------------------q~~~IPvLP~~Lld~leaP--~PfliGi~s~~~~~~~~~ 257 (714)
-+.+-|.+|...+|.|.++ --|++|.....+..-+
T Consensus 223 ~~p~~~~~~~~~~~~~~~sl~ts~r~s~l~~~GlPL~IF~kg~~f~PYlpLQqld~L~~~~~~s~lvGtTN~Lf~qqk-- 300 (379)
T PF09794_consen 223 ASPLLDSYESNWPLSKPTSLKTSDRKSLLRFYGLPLQIFGKGSLFQPYLPLQQLDLLSDPNTKSYLVGTTNSLFLQQK-- 300 (379)
T ss_pred cCcccchhhhccccCCCcccccCcccchHHHcCCCeeecCCCceecCcccHHHHHHhhccCccEEEEeeChHHHHhCc--
Confidence 1578899999999999444 6899999988775432
Q ss_pred cCCCEEEEecCCCcccCCCC
Q psy946 258 ELGDVVLLNADTNVLTTPHD 277 (714)
Q Consensus 258 ~~~d~v~vDLD~~~i~~~~~ 277 (714)
..---++||+|++.|+....
T Consensus 301 ~~~~DvlVdld~~~i~i~d~ 320 (379)
T PF09794_consen 301 DLYADVLVDLDTGTIEILDP 320 (379)
T ss_pred ccccCEEEEecCCEEEEcCH
Confidence 22135789999999988754
No 16
>smart00801 dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins. The dDENN domain is part of the tripartite DENN domain. It is always found downstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.41 E-value=2.7e-13 Score=113.92 Aligned_cols=66 Identities=48% Similarity=0.867 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHHhhhcHHhhhc---cCCCCceeecHHHhhhhcCCChHHHHHHHHhhhHHHHHHHHH
Q psy946 419 GDGVARAFLRALVQLIGGYRDALK---FHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEER 484 (714)
Q Consensus 419 ~d~i~~aFl~~~~~ll~~Yr~~l~---~~~~~~~~F~~e~Fl~s~~~~~~~Fl~~f~eTQmF~~FIeer 484 (714)
+++|++||+++|+.++++|++|+. ..++....||+++|++++++++++|++.|++||||++||++|
T Consensus 1 ~~~Ir~aFl~~f~~l~~~Y~~~l~~~~~~~~~~~~F~~~~Fl~~~~~~~~~Fl~~~~~TQ~F~~Fi~~r 69 (69)
T smart00801 1 NDEIREAFLRFFVNLFGGYRNFLRELRKEPGPVITFDKESFLKSRPSSERPFLSKFLETQMFSQFIEER 69 (69)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeCHHHHHHhCCchhhHHHHHHHHHhhHHHHHhcC
Confidence 467999999999999999999997 345678899999999999999999999999999999999986
No 17
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=99.40 E-value=2.9e-13 Score=113.42 Aligned_cols=66 Identities=42% Similarity=0.821 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHhhhcHHhhhccCCCCc-eeecHHHhhhhcCCChHHHHHHHHhhhHHHHHHHHH
Q psy946 419 GDGVARAFLRALVQLIGGYRDALKFHQGQE-ITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEER 484 (714)
Q Consensus 419 ~d~i~~aFl~~~~~ll~~Yr~~l~~~~~~~-~~F~~e~Fl~s~~~~~~~Fl~~f~eTQmF~~FIeer 484 (714)
+++|+.+|+++|++++++|++|+....... ..||+++|+++++++.++|++.|++||||++||++|
T Consensus 2 d~~Ir~~Fl~~f~~ll~~Yr~~~~~~~~~~~~~F~~~~Fl~~~~~~~~~Fl~~f~~TQ~F~~Fi~~R 68 (68)
T PF03455_consen 2 DDQIREAFLRFFVSLLGNYREYLIYDRQSPRVIFDKEAFLKSRPKESRPFLKAFLETQMFEQFIEER 68 (68)
T ss_dssp -THHHHHHHHHHHHHHGGGGGG-------------HHHHS--SSHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeccHHHHhcCChhHhHHHHHHHHHHhHHHHHhcC
Confidence 468999999999999999999998654333 699999999999999999999999999999999997
No 18
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=99.39 E-value=1.1e-13 Score=115.02 Aligned_cols=57 Identities=30% Similarity=0.616 Sum_probs=42.4
Q ss_pred CccEEEeCCC-CC-CCchhcCcCCcccccCCccC-----CcceEEEEEEecCCCCeEEEEeecC
Q psy946 29 PAWVLQKFPG-SY-KDESVLKNVPKFAYPCKLEN-----TSVEYYSFVLTDLDSKFTFGYCRHD 85 (714)
Q Consensus 29 ~P~Il~~yP~-~~-~d~~~~~~I~~FCFP~g~~~-----~~~~~FsFVLTd~~G~r~yG~C~~~ 85 (714)
+|+|+++||+ ++ .+..++++|++||||+|.+. ..+++|+|||||++|+|.||+|+++
T Consensus 1 ~p~il~~yP~~d~~~~~~~~~~i~~FCfP~G~~~~~~~~~~~~~f~FvLT~~~G~r~Yg~Cl~f 64 (65)
T PF03456_consen 1 KPEILDRYPPSDHEPDPPLPPSIPMFCFPDGIEISSQSRPPPQFFSFVLTDEDGSRLYGYCLRF 64 (65)
T ss_dssp --EEEEEEST--T---HHHHHHHHHHHS-S-CCCCGGG-GSSCEEEEEEE-TTS-EEEEEEEE-
T ss_pred CCEEEEECCCCccccCCCChhhCCccCCCCCcEeeccccCCCeEEEEEEECCCCCEEEEEEEEC
Confidence 5899999999 45 67788999999999999753 3578999999999999999999985
No 19
>KOG2432|consensus
Probab=99.33 E-value=2.6e-11 Score=130.78 Aligned_cols=244 Identities=18% Similarity=0.268 Sum_probs=186.6
Q ss_pred hchhchheeEEEEeCCCCCCCccEEEeCCCCC--CCchhcCcCCcccccCCccCC-cceEEEEEEec-------------
Q psy946 9 DNVKHLFECFCEVARPQGKEPAWVLQKFPGSY--KDESVLKNVPKFAYPCKLENT-SVEYYSFVLTD------------- 72 (714)
Q Consensus 9 ~~~~~lFe~f~~V~~~~~~~~P~Il~~yP~~~--~d~~~~~~I~~FCFP~g~~~~-~~~~FsFVLTd------------- 72 (714)
+++++|.-|||+|+.+-..++. +.-.||+++ .|.+ .-+|+..+|||..... ....|.|.+..
T Consensus 23 ~~f~~WlHc~Cvv~FDLelGQa-lE~iYP~~~~ls~~E-~~nicy~aFPDSNs~~~~Dt~F~fR~R~~~~~~~~~~~dkd 100 (565)
T KOG2432|consen 23 DNFSQWLHCFCVVTFDLELGQA-LEVIYPPDFMLSDQE-KINICYLAFPDSNSSCMGDTKFHFRFRRTTRRDSLPGYDKD 100 (565)
T ss_pred HHHHHhheeeEEEEechhhcce-eeeecCCccccccch-heeeeEeecCCCCccccccceEEEEEeccccccccccccCC
Confidence 4588999999999999876655 888999986 3333 3479999999987543 34455555432
Q ss_pred -----CCCCeEEEEeecC---------CCCCeEEEEEcCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCC
Q psy946 73 -----LDSKFTFGYCRHD---------PKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEY 138 (714)
Q Consensus 73 -----~~G~r~yG~C~~~---------p~~~~aicILS~~P~~~~F~~iL~~i~~~~~~~~~~~le~~i~~l~~~p~P~p 138 (714)
.||...|||..-. ++..+++.|+|++||+++|+.+|..|...+.+.....++.....+-.+|.|.+
T Consensus 101 ~~~l~~d~~ylyG~VffRQ~~Dk~l~RGy~QKSvviis~LPf~~lf~tvl~~iap~yFe~gt~~ieaa~~~i~~Wp~p~~ 180 (565)
T KOG2432|consen 101 PPALRQDGMYLYGFVFFRQTRDKTLKRGYFQKSVVIISFLPFFSLFYTVLFQIAPFYFELGTNAIEAACCGIDRWPAPVP 180 (565)
T ss_pred CcccCCCCceeEEEEeeeeechhhhhhhhhhhceEEEEecccccccchHHhhhchHHHhcccchhhhhhccccCCCCccC
Confidence 3456678887632 57889999999999999999999999998877777778877777777999999
Q ss_pred CceEEEEeCCceeeEeCCCCCCCCCCCCCC------------ccc------cccccC--hhhHHHHHHHHhcCCcEEEEe
Q psy946 139 GQIIYATSKNTEYTCQAPNQYQLPSIPENK------------NLT------EYCAIE--PVNMLHIFASMLYERRIVITS 198 (714)
Q Consensus 139 G~~l~~~~~~~~~~~~~P~~~~LP~~~~~~------------~l~------~~~~Ls--~~~Il~l~~alLlErkII~~S 198 (714)
|.++.++..+....+..|....+|...... ++. ++.++. ..++-.+|.-+|+..-|++++
T Consensus 181 Gk~LELPll~c~~KI~lP~a~~~p~~ar~~~~~e~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPiliva 260 (565)
T KOG2432|consen 181 GKTLELPLLGCKKKIRLPTAHSLPFEARKTGAVELRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVA 260 (565)
T ss_pred CceeeecccceeeeeeccccccCcccccccceeeeccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEec
Confidence 999999988776666666544455322110 111 111111 124567899999999999999
Q ss_pred CCcchhHHHHHhhhhhhccccccceeeeccccc------ccccccCCccccccccchhhhhh
Q psy946 199 KRLSRVSACVQAANSVIYPMCWQHIFIPLMPRD------LLDYLTAPMPYMVGLPEILLDSV 254 (714)
Q Consensus 199 ~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~------Lld~leaP~PfliGi~s~~~~~~ 254 (714)
..++.-|..|.+++.++.|+.++..+-|+.-.+ +..-+++|-+.+.|+...++-+.
T Consensus 261 ptPs~~Se~V~~lv~liaPL~~c~dfRPYFTIHDseF~e~tS~~~sdP~~iLGVTNpFF~K~ 322 (565)
T KOG2432|consen 261 PTPSHCSEIVQLLVRLIAPLIYCPDFRPYFTIHDSEFREYTSNVDSDPLVILGVTNPFFRKA 322 (565)
T ss_pred CCchhhHHHHHHHHHHhhcceeCCCCCceeeeccHHHHHHHhccCCCCceEEecCCHHHHHH
Confidence 999999999999999999999999999988775 34556799999999999887665
No 20
>KOG1090|consensus
Probab=99.26 E-value=1.5e-12 Score=149.59 Aligned_cols=125 Identities=24% Similarity=0.469 Sum_probs=111.8
Q ss_pred ccccccceeecCCcchhhhhhhhccccceeeecccccchhHHHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeec
Q psy946 285 DVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVG 364 (714)
Q Consensus 285 ~l~~l~~f~~L~~~nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiG 364 (714)
++++| |..|+..|++.++.++|.|.||++.|+.+-.||.|+.|+.+|||||.|.|.+|||||.+|.++|++|+|||||
T Consensus 180 ~v~~l--fk~lg~qnvi~ii~a~lsd~ri~~~s~~~~~ls~~~~ai~sllypf~y~h~~v~ilp~~l~evl~sptpfl~g 257 (1732)
T KOG1090|consen 180 DVAML--FKMLGFQNVIKIIHALLSDCRIVLASSSLMRLSRCQNAILSLLYPFEYVHSCVTILPDSLAEVLESPTPFLIG 257 (1732)
T ss_pred cHHHH--HHHhhhhHHHHHHHHHHhcceEeeehhHHHHHHHHHHHHHHHhcchheeeeeeeecccHHHHHhcCCCceeeh
Confidence 55555 4589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhhhccCCCeEEEecCCCcccCCCC-CCCCCCHHHHHHHHHHHhc
Q psy946 365 LPEILLDSVRRNELGDVVLLNADTNVLTTPHD-DLNTLPQDVIATLKKQLRN 415 (714)
Q Consensus 365 v~~~~~~~~~~~~~~dvvivDLD~~~i~~p~~-dl~~LP~~~~~~Lk~~L~~ 415 (714)
||+++...+ .+++++||||+|.+..|.. ++..+|.....++.++|+.
T Consensus 258 v~s~~~t~~----~de~ivv~ld~g~v~vpd~~~i~~~~~~~~~~~~~~l~m 305 (1732)
T KOG1090|consen 258 VLSEFVTSF----GDENIVVYLDNGEVHVPDHAEIYKSDDYYYNSLHQRLRM 305 (1732)
T ss_pred hhHHHhhhc----CCceEEEEecCCEEecCCceeeecCCcHHHHHHHHHHHH
Confidence 999876554 3589999999999998853 5667888888888888764
No 21
>KOG3823|consensus
Probab=99.22 E-value=4.7e-10 Score=120.90 Aligned_cols=369 Identities=20% Similarity=0.272 Sum_probs=207.5
Q ss_pred eeEEEEeCCCCCCCccEEEeCCC--CCCCchhcCcCCcccccCCccCCcceEEEEEEec----CCCCeEEE-EeecC---
Q psy946 16 ECFCEVARPQGKEPAWVLQKFPG--SYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTD----LDSKFTFG-YCRHD--- 85 (714)
Q Consensus 16 e~f~~V~~~~~~~~P~Il~~yP~--~~~d~~~~~~I~~FCFP~g~~~~~~~~FsFVLTd----~~G~r~yG-~C~~~--- 85 (714)
-|.++||.++. -.|+|.+-||. ..+-.+.-+.+|..++|+|.+.....+..|.|-- .|....|| .|.|.
T Consensus 12 KOG~~vgFHHk-rGpeIE~~~~~pe~~~~p~~W~~LPflaLPDGsHsfeedfvyFtLp~~~~PnDegtifgvSC~RQi~~ 90 (630)
T KOG3823|consen 12 LCLLVVGFHHK-RGPEIEFSHPSPERNECPSGWKYLPFLALPDGSHSFEEDFVYFTLPSLYEPNDEGTIFGVSCYRQIRV 90 (630)
T ss_pred EEEEeeecccc-cCCceeeecCCCCcCcCccccccCcceecCCCccccccceEEEecccccCCCCCccEEEEEeehhhhh
Confidence 46667888753 47889999954 3333344578999999999988766655666654 12234666 58764
Q ss_pred ------------CCCCeEEEEEcCcccHHHHHHHHHHHHHHhcCC----ChHHHHHHHHHHhcCCCCCCCceEEEEeCCc
Q psy946 86 ------------PKSDTSMVIISLLPWHESFYKLLNCVVEITNGS----SPQLLWTFLEDIYNANIPEYGQIIYATSKNT 149 (714)
Q Consensus 86 ------------p~~~~aicILS~~P~~~~F~~iL~~i~~~~~~~----~~~~le~~i~~l~~~p~P~pG~~l~~~~~~~ 149 (714)
..+++++|+|+|.|.|....+-|..+.+.+... ....+.++.++|..+--|.
T Consensus 91 ~~Lk~~~~DvTRStVQKavvVi~r~PifG~IkdkL~iVtnAfF~QgDFs~~~~l~~~y~~l~a~~~~~------------ 158 (630)
T KOG3823|consen 91 EKLKIRTADVTRSTVQKAVVVIARLPIFGYIKDKLAIVTNAFFDQGDFSGTELLAKAYQQLNACLQDD------------ 158 (630)
T ss_pred hhhcccccccchhhhheeEEEEEcCCccceehhhhHHhhhhhhcccCcccHHHHHHHHHHHHhhcchh------------
Confidence 247899999999999999999998887765432 2334444444442221110
Q ss_pred eeeEeCCCCCCCCCCCCCCccccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeeccc
Q psy946 150 EYTCQAPNQYQLPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMP 229 (714)
Q Consensus 150 ~~~~~~P~~~~LP~~~~~~~l~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP 229 (714)
..++|.. .+ .+.. .+|..+.+-=-.|-+.++.+||+++|||++++....|......+.+||-
T Consensus 159 --l~R~~e~-~~-hIgL-~nLr~il~~wr~naLvLlK~~lL~krIvvyg~~ve~lcnlq~gl~SLIP------------- 220 (630)
T KOG3823|consen 159 --LSRRPER-HF-HIGL-SNLREILLHWRHNALVLLKLMLLQKRIVVYGSPVEQLCNLQLGLASLIP------------- 220 (630)
T ss_pred --hhcchhh-he-eehH-HHHHHHHHHHHHhHHHHHHHHHhcceEEEeCCcHHHHHHHHHHHHHhcC-------------
Confidence 0011100 00 0000 0122211111236788999999999999999999999999998888852
Q ss_pred ccccccccCCccccccccchhhhhhhcccCCCEEEEecCCCcccCCCCCCCCCCcccccccceeecCCcchhhhhhhhcc
Q psy946 230 RDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLY 309 (714)
Q Consensus 230 ~~Lld~leaP~PfliGi~s~~~~~~~~~~~~d~v~vDLD~~~i~~~~~dl~~lP~~l~~l~~f~~L~~~nil~l~~slLl 309 (714)
+|++=+--..+.... .+.+. ++..+++
T Consensus 221 --------~~Ms~lqDs~sp~a~-------------------------------~~e~~------------L~~vaS~-- 247 (630)
T KOG3823|consen 221 --------SPMSDLQDSLSPEAQ-------------------------------EAEAE------------LEAVASV-- 247 (630)
T ss_pred --------CcchhhhcccChhHH-------------------------------HHHHh------------hccchhh--
Confidence 232222222111111 00000 0001110
Q ss_pred ccceeeecccccchhHHHHhhhhhccCcc---cccccccCCCcchhhhhcCCCC--eeecccchhhHHhhhccCCCeEEE
Q psy946 310 ERRIVITSKRLSRVSACVQAANLVIYPMC---WQHIFIPLMPRDLLDYLTAPMP--YMVGLPEILLDSVRRNELGDVVLL 384 (714)
Q Consensus 310 ErrII~~S~~ls~Ls~~v~al~sLl~Pf~---W~h~~IPvLP~~lld~L~AP~P--fiiGv~~~~~~~~~~~~~~dvviv 384 (714)
.+++-..|. .++-+|+. =-..|.|..|..+++.|++|+- |+||-...++..-+ ..-++++|
T Consensus 248 ------~~sd~~sll------a~~GfPl~IF~~G~lfsPYtpLq~m~~l~~~~~ls~~iGtsNtL~~~~~--~~~~~~vv 313 (630)
T KOG3823|consen 248 ------AASDEQSLL------ASAGFPLSIFASGNLFSPYTPLQYMDLLSDPMVLSYVIGTSNTLFQQKR--QLADVLVV 313 (630)
T ss_pred ------hcccHHHHH------HhcCCceeeeccCcccCCCCchHHHhhhcccceeEeeecCchHHHHHhh--hhccEEEE
Confidence 011111111 11223332 2345889999999999999986 99998877765543 34578888
Q ss_pred ecCCCcccCCCCCCC---CCC---HHHHHHHHHHHhc----CC-----CchHHHHHHHHHHHHhhhc--HHhhhccCCCC
Q psy946 385 NADTNVLTTPHDDLN---TLP---QDVIATLKKQLRN----KT-----TGDGVARAFLRALVQLIGG--YRDALKFHQGQ 447 (714)
Q Consensus 385 DLD~~~i~~p~~dl~---~LP---~~~~~~Lk~~L~~----~~-----~~d~i~~aFl~~~~~ll~~--Yr~~l~~~~~~ 447 (714)
.-|+.++..-...+. .|. .+....+-++..+ .. .++=||..|--++.-|+.. |-+++.....+
T Consensus 314 ~~dt~~~d~~Dptl~~~l~Ls~~Dk~wme~I~s~v~ssl~~E~p~FEGSedwIR~QFe~Yi~glL~tvk~~d~l~Kq~Ds 393 (630)
T KOG3823|consen 314 IEDTANLDAHDPTLRRQLVLSTEDKRWMEYIMSHVQSSLPKEDPEFEGSEDWIREQFEGYILGLLRTVKAPDALPKQKDS 393 (630)
T ss_pred ecCcccccccCcchhcceeeecccHHHHHHHHHHhhhcCcccccCcCChHHHHHHHHHHHHHHHHHHhhccccccccchh
Confidence 888877765432211 122 2233333332222 11 1455888887777666653 44555422111
Q ss_pred ceeecHHHhhhhc-CC--ChHHHHHHHHhhhHHHHHHHHH
Q psy946 448 EITFNDAAFVESR-PA--AMQPFLRKMLDLQIFQQFKEER 484 (714)
Q Consensus 448 ~~~F~~e~Fl~s~-~~--~~~~Fl~~f~eTQmF~~FIeer 484 (714)
+ ...-.++-+. +- =...|+..+.+||.|+.|-+-|
T Consensus 394 -i-Lsqyhylpstsc~~~fn~~f~~~wk~Tq~F~iwn~~~ 431 (630)
T KOG3823|consen 394 -I-LSQYHYLPSTSCNDHFNAHFMGAWKRTQCFQIWNDVR 431 (630)
T ss_pred -h-HhhhhhccCCChhhhhhHHHHHHHHhhceeehhhccC
Confidence 1 1111222211 11 2467999999999999987655
No 22
>PF08616 SPA: Stabilization of polarity axis
Probab=98.20 E-value=2.8e-06 Score=78.54 Aligned_cols=95 Identities=24% Similarity=0.284 Sum_probs=75.2
Q ss_pred hhhHHHHHHHHhcCCcEEEEeCCcch--hHHHHHhhhhhhccc----cccceeeecccccccccccCCccccccccchhh
Q psy946 178 PVNMLHIFASMLYERRIVITSKRLSR--VSACVQAANSVIYPM----CWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILL 251 (714)
Q Consensus 178 ~~~Il~l~~alLlErkII~~S~~~s~--LS~~v~al~sLL~PF----~Wq~~~IPvLP~~Lld~leaP~PfliGi~s~~~ 251 (714)
...++.+|.++|+++||||+|.+++. ++.+|.|+.+|+.|. ..++-+-|....+-++-+.+..-||+|+....+
T Consensus 12 ~~~i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p~~~~~~~~~~~~PY~~i~~~~~l~~~~~~I~GvtNP~F 91 (113)
T PF08616_consen 12 GPEIILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISPGQDLRYFSNRYFPYFTISDLDELKSCPGYIAGVTNPIF 91 (113)
T ss_pred hhHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCcccchhcccccccceeechhhhhhccCCCEEEEeCCHHH
Confidence 45688899999999999999999999 999999999999992 122334666666667777777779999999988
Q ss_pred hhhhcccCCCEEEEecCCCcccCC
Q psy946 252 DSVRRNELGDVVLLNADTNVLTTP 275 (714)
Q Consensus 252 ~~~~~~~~~d~v~vDLD~~~i~~~ 275 (714)
.... .-=-+++|+|+++|+..
T Consensus 92 ~~~~---~~wD~~~~l~~~~i~~s 112 (113)
T PF08616_consen 92 EKRL---DWWDHLCDLDTGEITVS 112 (113)
T ss_pred Hhcc---ccCCEEEEcCCCeEEec
Confidence 6531 11256899999988653
No 23
>PF08616 SPA: Stabilization of polarity axis
Probab=97.53 E-value=0.00014 Score=67.27 Aligned_cols=94 Identities=23% Similarity=0.295 Sum_probs=72.4
Q ss_pred Ccchhhhhhhhccccceeeecccccc--hhHHHHhhhhhccCc----ccccccccCCCcchhhhhcCCCCeeecccchhh
Q psy946 297 PVNMLHIFASMLYERRIVITSKRLSR--VSACVQAANLVIYPM----CWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILL 370 (714)
Q Consensus 297 ~~nil~l~~slLlErrII~~S~~ls~--Ls~~v~al~sLl~Pf----~W~h~~IPvLP~~lld~L~AP~PfiiGv~~~~~ 370 (714)
...++.++.++|+++|||+.|.+.+. ++.+|.|+.+|+.|. .....+-|....+-.+-+++..-||+|+.....
T Consensus 12 ~~~i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p~~~~~~~~~~~~PY~~i~~~~~l~~~~~~I~GvtNP~F 91 (113)
T PF08616_consen 12 GPEIILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISPGQDLRYFSNRYFPYFTISDLDELKSCPGYIAGVTNPIF 91 (113)
T ss_pred hhHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCcccchhcccccccceeechhhhhhccCCCEEEEeCCHHH
Confidence 45678889999999999999999999 999999999999992 112233566656667778777779999998776
Q ss_pred HHhhhccCCCeEEEecCCCcccC
Q psy946 371 DSVRRNELGDVVLLNADTNVLTT 393 (714)
Q Consensus 371 ~~~~~~~~~dvvivDLD~~~i~~ 393 (714)
+...+ . =-+++|+|++++..
T Consensus 92 ~~~~~--~-wD~~~~l~~~~i~~ 111 (113)
T PF08616_consen 92 EKRLD--W-WDHLCDLDTGEITV 111 (113)
T ss_pred Hhccc--c-CCEEEEcCCCeEEe
Confidence 55321 1 12689999998753
No 24
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=97.08 E-value=0.0013 Score=72.80 Aligned_cols=97 Identities=24% Similarity=0.377 Sum_probs=73.9
Q ss_pred cchhhhhhhhccccceeeecccccchhHHHHhhhhhccC----cc-----------------------------------
Q psy946 298 VNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYP----MC----------------------------------- 338 (714)
Q Consensus 298 ~nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl~P----f~----------------------------------- 338 (714)
.+++.+|.++||||||+|.|++.+.++.++.|+.||+=- ++
T Consensus 176 ~~~LvL~K~LLLekKIlfy~s~ve~l~~~~~sLiSLiPgli~~L~d~~~p~~~~~~~~~~~~~~~sl~ts~r~s~l~~~G 255 (379)
T PF09794_consen 176 HKTLVLFKALLLEKKILFYGSPVERLCNFQLSLISLIPGLINNLQDSASPLLDSYESNWPLSKPTSLKTSDRKSLLRFYG 255 (379)
T ss_pred HHHHHHHHHHHhcCCeEEEcCCHHHHHHHHHHHHHHhHHHHHhHhhccCcccchhhhccccCCCcccccCcccchHHHcC
Confidence 568889999999999999999999999999998766421 11
Q ss_pred -------cccccccCCCcchhhhhcCC--CCeeecccchhhHHhhhccCCCeEEEecCCCcccCCCC
Q psy946 339 -------WQHIFIPLMPRDLLDYLTAP--MPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHD 396 (714)
Q Consensus 339 -------W~h~~IPvLP~~lld~L~AP--~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~~p~~ 396 (714)
=.+.+-|.+|...+|.|.++ --|+||...+++..-+ +.--=|+||+|+++|+....
T Consensus 256 lPL~IF~kg~~f~PYlpLQqld~L~~~~~~s~lvGtTN~Lf~qqk--~~~~DvlVdld~~~i~i~d~ 320 (379)
T PF09794_consen 256 LPLQIFGKGSLFQPYLPLQQLDLLSDPNTKSYLVGTTNSLFLQQK--DLYADVLVDLDTGTIEILDP 320 (379)
T ss_pred CCeeecCCCceecCcccHHHHHHhhccCccEEEEeeChHHHHhCc--ccccCEEEEecCCEEEEcCH
Confidence 12567888999999999554 3599999887754422 22123789999999987753
No 25
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=93.88 E-value=0.24 Score=47.90 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=58.1
Q ss_pred EEEeCCCCCCCccEEEeCCCCCCCchhcCcCCcccccCCccCCcceEEEEEEecC-------------------------
Q psy946 19 CEVARPQGKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDL------------------------- 73 (714)
Q Consensus 19 ~~V~~~~~~~~P~Il~~yP~~~~d~~~~~~I~~FCFP~g~~~~~~~~FsFVLTd~------------------------- 73 (714)
+.++-=.-+..|.+..+||.......-..+++..++|+|.+......-.|.|-..
T Consensus 5 IL~AEFDid~Gp~l~hQYP~~i~g~~de~~LAelMLPDg~h~r~~DwTvFfL~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 84 (145)
T PF07792_consen 5 ILLAEFDIDKGPVLKHQYPSPIPGLEDEHMLAELMLPDGAHKRSEDWTVFFLNRDKSTEEFQLFKNKKSPSNSSDNNSNN 84 (145)
T ss_pred EEEEEEecCcCCEEEEeCCCCccCCccHHHHHHhhCCcccccccCCEEEEEEccCCCCchhhhccccccccccccccccc
Confidence 3333323356788999999975542234578899999998754332222222111
Q ss_pred ------------CCCeEEEEeecC---------CCCCeEEEEEcCcccHHHHHHHHHH
Q psy946 74 ------------DSKFTFGYCRHD---------PKSDTSMVIISLLPWHESFYKLLNC 110 (714)
Q Consensus 74 ------------~G~r~yG~C~~~---------p~~~~aicILS~~P~~~~F~~iL~~ 110 (714)
+..-.|+++... +..-+|++|.|++||+..|+.+|..
T Consensus 85 ~~~~~~~~~~~~~~~~ly~ln~v~~k~D~~~rRGA~vKa~aI~T~~~~~~ifKPlL~l 142 (145)
T PF07792_consen 85 IEESSNDDENQEGPPPLYVLNLVNTKHDKTVRRGAVVKAMAICTRHPFFHIFKPLLLL 142 (145)
T ss_pred cccccccccccCCCCceEEEEeeccccCcccccccceeEEEEEcccHHHHHHhHHHHH
Confidence 113355555532 2345799999999999999998864
No 26
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=71.18 E-value=82 Score=33.93 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=80.0
Q ss_pred cEEEeCCC-CCCCchhcCcCCcccccCCccCCcceEEEEEEecCCCCeEEEEee-cCCC---------CCeEEEEEcCcc
Q psy946 31 WVLQKFPG-SYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDSKFTFGYCR-HDPK---------SDTSMVIISLLP 99 (714)
Q Consensus 31 ~Il~~yP~-~~~d~~~~~~I~~FCFP~g~~~~~~~~FsFVLTd~~G~r~yG~C~-~~p~---------~~~aicILS~~P 99 (714)
.|.+++|- +.+ +.+|..=++|.|.+........|+ +.-.||.|. +... .-+++.||...|
T Consensus 13 ~i~W~~~~~~i~----L~gVEfKsLPSGlH~v~~D~VyF~-----~~~~~Gls~F~~~~~~~~~~r~arM~SvGVL~~~~ 83 (280)
T PF09804_consen 13 TIVWSRPAPDID----LEGVEFKSLPSGLHEVDEDVVYFV-----HDGYYGLSCFRQNPADEEEERGARMYSVGVLVPPP 83 (280)
T ss_pred EEEEeccCCCCc----cCCeeEecCCcccccccccEEEEe-----cCCEEEEEEEEeCCCCcccccCcEEEEEEEEeccc
Confidence 38888884 322 345777789999998877777787 446799765 3211 125788887653
Q ss_pred cH-----HHHHHHHHHHHHHhc-C-CChHHHHHHHHHHhcC-----CCCCCCceEEEEeCCceeeEeCCCCCCCCCCCCC
Q psy946 100 WH-----ESFYKLLNCVVEITN-G-SSPQLLWTFLEDIYNA-----NIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPEN 167 (714)
Q Consensus 100 ~~-----~~F~~iL~~i~~~~~-~-~~~~~le~~i~~l~~~-----p~P~pG~~l~~~~~~~~~~~~~P~~~~LP~~~~~ 167 (714)
+. --+.+.|+.++.... + .+...+++|.+..... ..|..+. -.-.... ......+....++..--.
T Consensus 84 ~~~~~~~w~h~~~L~~l~~~~~~~~~~~~~le~~~e~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~Hp~ 161 (280)
T PF09804_consen 84 NGFYGRLWRHAEFLEELARHLLKDPGDYSPLEAYWEKNKADENSSSSSPPDSH-SRNRSLS-DATALIPPDPPLSPYHPA 161 (280)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHhcccccccccCCcccc-ccccccc-cccccCCCccCCCCCCHH
Confidence 21 123344444443332 2 3456777777653220 0111000 0000000 000000000011100000
Q ss_pred Ccccc-ccccChhhHHHHHHHHhcCCcEEEEeCCc
Q psy946 168 KNLTE-YCAIEPVNMLHIFASMLYERRIVITSKRL 201 (714)
Q Consensus 168 ~~l~~-~~~Ls~~~Il~l~~alLlErkII~~S~~~ 201 (714)
..|.. +..++| .|..||.+.|+-+||+|++.-+
T Consensus 162 ~~Lp~~l~~fGP-lIF~L~K~aLLRKRILi~~~~p 195 (280)
T PF09804_consen 162 GSLPQLLDTFGP-LIFPLWKAALLRKRILIFSPPP 195 (280)
T ss_pred HHHHHHHHHhCc-HHHHHHHHHhhcCcEEEecCCC
Confidence 01212 223554 5899999999999999997554
No 27
>KOG3823|consensus
Probab=35.22 E-value=22 Score=40.22 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=32.0
Q ss_pred cchhhhhhhhccccceeeecccccchhHHHHhhhhhc
Q psy946 298 VNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVI 334 (714)
Q Consensus 298 ~nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl 334 (714)
+|-+-++..||++||||..++....|.....++.+||
T Consensus 183 ~naLvLlK~~lL~krIvvyg~~ve~lcnlq~gl~SLI 219 (630)
T KOG3823|consen 183 HNALVLLKLMLLQKRIVVYGSPVEQLCNLQLGLASLI 219 (630)
T ss_pred HhHHHHHHHHHhcceEEEeCCcHHHHHHHHHHHHHhc
Confidence 4667788999999999999999999888888887774
No 28
>PF02330 MAM33: Mitochondrial glycoprotein; InterPro: IPR003428 This mitochondrial matrix protein family contains members of the MAM33 family which bind to the globular 'heads' of C1Q.; GO: 0005759 mitochondrial matrix; PDB: 3QV0_A 1YQF_F 3JV1_A 1P32_A 3RPX_A.
Probab=24.24 E-value=85 Score=31.84 Aligned_cols=40 Identities=28% Similarity=0.585 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhHHHHhhhccCCCchhHHHHHHHHHhhhc
Q psy946 476 IFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKE 526 (714)
Q Consensus 476 mF~~FIeerl~~~ns~~~f~D~Fe~e~~~~~~~~~~~~~~~y~~w~~~~~~ 526 (714)
.|..|+++| |+.+.|-..+..|.. .+-.+.|-.|+.+|++
T Consensus 163 ~~~~yLeeR--------GId~~la~fl~~y~~---~kEq~eYi~wL~~l~~ 202 (204)
T PF02330_consen 163 AFMNYLEER--------GIDEELANFLHDYST---DKEQREYIRWLKNLKK 202 (204)
T ss_dssp HHHHHHHHT--------T-SHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 477888988 778888888887764 2345799999999886
No 29
>KOG2432|consensus
Probab=24.04 E-value=5.8e+02 Score=29.44 Aligned_cols=185 Identities=18% Similarity=0.231 Sum_probs=109.1
Q ss_pred chhhhhhhhccccceeeecccccchhHHHHhhhhhccCcccccccccCCCcch---h---hhhcCCCCeeecccchhhHH
Q psy946 299 NMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDL---L---DYLTAPMPYMVGLPEILLDS 372 (714)
Q Consensus 299 nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~l---l---d~L~AP~PfiiGv~~~~~~~ 372 (714)
++-.++..+|+...|++++-..+.-+..|.++..++.|+.+...+-|+.-.+- . .-+++|-+-|.||....+-+
T Consensus 242 QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL~~c~dfRPYFTIHDseF~e~tS~~~sdP~~iLGVTNpFF~K 321 (565)
T KOG2432|consen 242 QLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLIYCPDFRPYFTIHDSEFREYTSNVDSDPLVILGVTNPFFRK 321 (565)
T ss_pred HHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcceeCCCCCceeeeccHHHHHHHhccCCCCceEEecCCHHHHH
Confidence 34456777889999999999999999999999999999999988777765543 2 34578888999998776555
Q ss_pred hhhccCCCeE-EEecCCCc----------ccCCCCCCCC-----------CCHHHHHHHHHHHhc---CCC----chHHH
Q psy946 373 VRRNELGDVV-LLNADTNV----------LTTPHDDLNT-----------LPQDVIATLKKQLRN---KTT----GDGVA 423 (714)
Q Consensus 373 ~~~~~~~dvv-ivDLD~~~----------i~~p~~dl~~-----------LP~~~~~~Lk~~L~~---~~~----~d~i~ 423 (714)
+-+ ....++ +.|...|. +.+....+.. |-++ .+-+|+-+.. +.. +.-+|
T Consensus 322 ~L~-~wPHilrv~~~~~n~~~~~~k~~~kl~~~~~~Lns~~gl~t~Ykp~lkkD-~slikkll~g~~~krpeevqs~ilr 399 (565)
T KOG2432|consen 322 ALA-HWPHILRVGDNQPNMQQQQQKKAKKLASANTTLNSKAGLYTKYKPYLKKD-KSLIKKLLLGMKTKRPEEVQSAILR 399 (565)
T ss_pred HHh-cCcceeeecCCCccccchhhhhhhhhhhhccccCCCccceeccccccCcc-HHHHHHHHHhcccCChHHHHHHHHH
Confidence 432 233333 22322111 0000000000 0000 0112222221 111 22355
Q ss_pred HHHHHHHHH---hhhcHHhhhccC--------CCCceeecHHHhhhhcC-----------CChHHHHHHHHhhhHHHHHH
Q psy946 424 RAFLRALVQ---LIGGYRDALKFH--------QGQEITFNDAAFVESRP-----------AAMQPFLRKMLDLQIFQQFK 481 (714)
Q Consensus 424 ~aFl~~~~~---ll~~Yr~~l~~~--------~~~~~~F~~e~Fl~s~~-----------~~~~~Fl~~f~eTQmF~~FI 481 (714)
+-||..-.. -++.|-.-+... +...-.|-.++|++.-. +.....|+.|+.+--|..+-
T Consensus 400 rhfLElt~~f~~p~~~Y~a~l~pqk~isP~~s~p~~~sF~~defl~~le~~Gp~lt~r~kgdw~glyrrflrspnf~gwf 479 (565)
T KOG2432|consen 400 RHFLELTQSFMIPLERYMASLMPQKDISPFKSPPNLNSFKLDEFLGTLEKAGPQLTSRLKGDWKGLYRRFLRSPNFRGWF 479 (565)
T ss_pred HHHHHhccceeecchHHHHhhCCccCCCcccCCCcccccCHHHHHHHHhhcCccccccccCCcHHHHHHHccCCCCchHH
Confidence 666655333 244554444311 12345688888887532 35678999999999999888
Q ss_pred HHHH
Q psy946 482 EERL 485 (714)
Q Consensus 482 eerl 485 (714)
..|-
T Consensus 480 ~~rr 483 (565)
T KOG2432|consen 480 GARR 483 (565)
T ss_pred HHHH
Confidence 8773
No 30
>KOG4704|consensus
Probab=21.04 E-value=1.2e+03 Score=26.07 Aligned_cols=169 Identities=13% Similarity=0.136 Sum_probs=86.7
Q ss_pred ccEEEeCCCCCCCchhcCcCCcccccCCccCCcceEEEEEEecCCC------CeE--EE------EeecC-------C--
Q psy946 30 AWVLQKFPGSYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDLDS------KFT--FG------YCRHD-------P-- 86 (714)
Q Consensus 30 P~Il~~yP~~~~d~~~~~~I~~FCFP~g~~~~~~~~FsFVLTd~~G------~r~--yG------~C~~~-------p-- 86 (714)
=-|.+.||.|.+- .+|..-.||.|.+.....+-.|+..|+-- ... || .|... .
T Consensus 17 ~~Vew~~p~didl----egIEfks~psGihe~~~d~I~Fr~~~~l~~~~~~k~~~~~~~~~~F~~~~f~il~~d~~~~r~ 92 (431)
T KOG4704|consen 17 YNVEWYYPGDIDL----EGIEFKSFPSGIHELDNDTIFFRFQDQLCLSVFSKLQHPSFERSAFFTSVFLILSDDINFGRA 92 (431)
T ss_pred ceEEEeccccccc----cceeeeccccccccccCceEEEEecchhhhhhhhcccCcccccchHhhhhhhhccccchhhhh
Confidence 3589999998543 46777778999877666666666644321 011 11 11110 0
Q ss_pred ---CCCeEEEEEcCcccHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHhcCCCCCC--Cce--EEEEeCCceeeEeCCCC
Q psy946 87 ---KSDTSMVIISLLPWHESFYKLLNCVVEITN-GSSPQLLWTFLEDIYNANIPEY--GQI--IYATSKNTEYTCQAPNQ 158 (714)
Q Consensus 87 ---~~~~aicILS~~P~~~~F~~iL~~i~~~~~-~~~~~~le~~i~~l~~~p~P~p--G~~--l~~~~~~~~~~~~~P~~ 158 (714)
.....+.|=+.....++-+++++.++..+. .....+++.+...+...-.-.+ ++. ..-...+..+....|..
T Consensus 93 ~vkm~s~g~~i~~~~~l~~~k~hF~e~~~h~ya~~~~~Shl~s~~rD~~k~l~~~~~~~e~~~~~~~l~s~~~~~~~~~~ 172 (431)
T KOG4704|consen 93 VVKMGSTGLYIANGLSLATLKYHFGEDASHTYASEKCTSHLLSDSRDFFKSLQTSAVNLEFDSLFEKLQSNKFAILGANS 172 (431)
T ss_pred hheecceEEEeccchhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhhccccccccCchhhhcccceEEecCchh
Confidence 012334444556666777788887766543 3445666666655533322121 111 11111111111111211
Q ss_pred CCCCCCCCCCcccc-ccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHH
Q psy946 159 YQLPSIPENKNLTE-YCAIEPVNMLHIFASMLYERRIVITSKRLSRVSAC 207 (714)
Q Consensus 159 ~~LP~~~~~~~l~~-~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~ 207 (714)
.+.+. .-++- ...|++ .|..+|.+.|+-+||+++|.+-..+-.|
T Consensus 173 ~~h~~----~y~~~~~~~lGp-~i~~LwKfaLlrkRILi~sp~~~~~~~c 217 (431)
T KOG4704|consen 173 KEHSQ----SYATILLDHLGP-AIYCLWKFALLRKRILIISPHDDQLYSC 217 (431)
T ss_pred hhhhH----HHHHHHHHHhcc-HHHHHHHHHHHhheEEEEeCCCCceeeh
Confidence 11110 00111 123443 5889999999999999999986555444
Done!