Query psy946
Match_columns 714
No_of_seqs 336 out of 1017
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:55:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tw8_A DENN domain-containing 100.0 3.6E-81 1.2E-85 685.1 25.5 378 6-504 5-389 (391)
2 3tw8_A DENN domain-containing 99.9 2.4E-24 8.1E-29 235.9 7.2 115 173-287 175-289 (391)
3 2ab9_A Pro-SFTI-1; protein, be 52.0 5.3 0.00018 26.4 1.1 14 45-58 17-30 (31)
4 1yqf_A Hypothetical protein LM 21.5 69 0.0024 31.3 4.0 40 476-526 161-200 (203)
5 3jv1_A P22 protein; MAM33 fami 20.7 63 0.0022 31.0 3.4 40 476-526 140-179 (182)
6 1p32_A Mitochondrial matrix pr 19.6 68 0.0023 31.4 3.4 40 476-526 165-204 (209)
7 3v42_A Folliculin; tumor suppr 18.9 2.4E+02 0.0081 28.1 7.2 82 294-388 15-103 (226)
8 3v42_A Folliculin; tumor suppr 18.0 93 0.0032 31.1 4.0 41 175-215 15-55 (226)
9 3qv0_A Mitochondrial acidic pr 13.8 1.4E+02 0.0046 29.9 4.0 40 476-526 185-224 (227)
10 3r9v_A Invasin IPAD; type III 11.5 6E+02 0.02 26.1 7.9 19 579-598 238-256 (286)
No 1
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-81 Score=685.13 Aligned_cols=378 Identities=42% Similarity=0.781 Sum_probs=308.7
Q ss_pred cchhchhchheeEEEEeCCCC-CCCccEEEeCCCCCCCchhcCcCCcccccCCccC----CcceEEEEEEecCCCCeEEE
Q psy946 6 FSRDNVKHLFECFCEVARPQG-KEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLEN----TSVEYYSFVLTDLDSKFTFG 80 (714)
Q Consensus 6 ~~~~~~~~lFe~f~~V~~~~~-~~~P~Il~~yP~~~~d~~~~~~I~~FCFP~g~~~----~~~~~FsFVLTd~~G~r~yG 80 (714)
+.|+||.++|||||+|+.+.+ ++.|+|+++||++++|++.+++||.||||+|.++ ..+++|+|||||+||+|+||
T Consensus 5 r~~~~~~~~f~~~~~v~~p~~~~~~p~i~~~fP~~~~d~~~l~~ip~FCfP~~~~~~~~~~~~~~fsFVLTd~dG~r~yg 84 (391)
T 3tw8_A 5 RTKANPDRTFDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQVGQHFTFVLTDIESKQRFG 84 (391)
T ss_dssp CSCSSCSSSCSEEEEEEC-----CCCEEEEEESTTCCCHHHHHHHHHHHSCSCHHHHGGGCCSEEEEEEEECTTSCEEEE
T ss_pred chhcCchhhEEEEEEEeCCCCCCCCCeeeEeCCCCcccchhhhccccccCCCccccCccCCCCceEEEEEecCCCCEEEE
Confidence 569999999999999999865 6999999999999999999999999999999863 35899999999999999999
Q ss_pred EeecCCCCCeEEEEEcCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCCCCceEEEEeCCceeeEeCCCCCC
Q psy946 81 YCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQ 160 (714)
Q Consensus 81 ~C~~~p~~~~aicILS~~P~~~~F~~iL~~i~~~~~~~~~~~le~~i~~l~~~p~P~pG~~l~~~~~~~~~~~~~P~~~~ 160 (714)
||++.++.++|||||||+||+++|+++|+.|+..+.+.....+|.+++.++++|+|.||+++++.... .++.|...+
T Consensus 85 ~Cr~~~~~~k~icilS~lp~f~~F~k~L~~l~~~~~~~~~~~le~~~~~l~~~P~P~pG~~v~l~~~~---~~~~P~~~~ 161 (391)
T 3tw8_A 85 FCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELENDLNETLRSLYNHPVPKANTPVNLSVHS---YFIAPDVTG 161 (391)
T ss_dssp EEEECTTSSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCCSCC-------------------C
T ss_pred EEEccCCCceEEEEEeCChHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhhCCCCCCCCeEEEeccc---eeeCCCCCC
Confidence 99999999999999999999999999999999988777788999999999999999999997776421 223444444
Q ss_pred CCCCCCCCccccccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccccccccCCc
Q psy946 161 LPSIPENKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPM 240 (714)
Q Consensus 161 LP~~~~~~~l~~~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld~leaP~ 240 (714)
+|.++++.++
T Consensus 162 Lp~~~~~~~~---------------------------------------------------------------------- 171 (391)
T 3tw8_A 162 LPTIPESRNL---------------------------------------------------------------------- 171 (391)
T ss_dssp CCCBTTSHHH----------------------------------------------------------------------
T ss_pred CCCCCCCCCH----------------------------------------------------------------------
Confidence 5443322111
Q ss_pred cccccccchhhhhhhcccCCCEEEEecCCCcccCCCCCCCCCCcccccccceeecCCcchhhhhhhhccccceeeecccc
Q psy946 241 PYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIVITSKRL 320 (714)
Q Consensus 241 PfliGi~s~~~~~~~~~~~~d~v~vDLD~~~i~~~~~dl~~lP~~l~~l~~f~~L~~~nil~l~~slLlErrII~~S~~l 320 (714)
...|.+|+++|++.+|+++|+||||||+|+++
T Consensus 172 ------------------------------------------------~~Lf~~L~~~~il~l~~~~LlE~rIl~~S~~~ 203 (391)
T 3tw8_A 172 ------------------------------------------------TEYFVAVDVNNMLQLYASMLHERRIVIISSKL 203 (391)
T ss_dssp ------------------------------------------------HHHHHHSCHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred ------------------------------------------------HHHHHhCCHHHHHHHHHHHHhcCCEEEEeCCH
Confidence 11234788999999999999999999999999
Q ss_pred cchhHHHHhhhhhccCcccccccccCCCcchhhhhcCCCCeeecccchhhHHhhhccCCCeEEEecCCCcccCCCCCCCC
Q psy946 321 SRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNT 400 (714)
Q Consensus 321 s~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~lld~L~AP~PfiiGv~~~~~~~~~~~~~~dvvivDLD~~~i~~p~~dl~~ 400 (714)
++||.|++|+.+|||||+|||+|||+||.+++|||+||+|||||||++.++.+.+.+.+|+++||||+|++..+.++++.
T Consensus 204 ~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~l~aP~PfiiGv~~~~~~~~~~~~~~dvvvVDLD~~~i~~~~~d~~~ 283 (391)
T 3tw8_A 204 STLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLESPFSDLNN 283 (391)
T ss_dssp HHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGGGGCSSCEEEEEETTTHHHHHTSCCCSCEEEETTTTEEECSCCTGGG
T ss_pred HHHHHHHHHHHHHhcCcccCcceEeecCHHHHhHhcCCCCEEEEecchhHHHhhccCCCCEEEEEcCCCeEeCCCccccc
Confidence 99999999999999999999999999999999999999999999999999988776789999999999999999889999
Q ss_pred CCHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHhhhcHHhhhccCCCCceeecHHHhhhhcCCChHHHHHHHHhhhHHH
Q psy946 401 LPQDVIATLKKQLRNKT--TGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQ 478 (714)
Q Consensus 401 LP~~~~~~Lk~~L~~~~--~~d~i~~aFl~~~~~ll~~Yr~~l~~~~~~~~~F~~e~Fl~s~~~~~~~Fl~~f~eTQmF~ 478 (714)
||++..+.|+++|++.. .+++|++||+++|++++|+||++++..+++.++||+++|+++++.+.++|+++|++||||+
T Consensus 284 LP~~~~~~L~~~L~~~~~~~~~~v~~aFlrf~~~llg~Yr~~l~~~~~~~~~F~~~~Fl~~r~~~~~~Fl~~~~~TQmF~ 363 (391)
T 3tw8_A 284 LPSDVVSALKNKLKKQSTATGDGVARAFLRAQAALFGSYRDALRYKPGEPITFCEESFVKHRSSVMKQFLETAINLQLFK 363 (391)
T ss_dssp SCHHHHHHHHHHHTSGGGGSBTHHHHHHHHHHHHHHGGGCC---------CCCCHHHHSCCSSHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHhHHHHhhccCCCCceEecHHHHhhccChhhhHHHHHHHHhhHHH
Confidence 99999999999998754 3889999999999999999999998888888999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcchhHHHHhh
Q psy946 479 QFKEERLNMLNSGQGFTDEFEREACN 504 (714)
Q Consensus 479 ~FIeerl~~~ns~~~f~D~Fe~e~~~ 504 (714)
+||++|++++|+|.||+|.||+||+.
T Consensus 364 ~FI~eRl~~ln~~~~~~d~fe~ei~~ 389 (391)
T 3tw8_A 364 QFIDGRLAKLNAGRGFSDVFEEEITS 389 (391)
T ss_dssp HHHHHHHHHTC---------------
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHhhc
Confidence 99999999999999999999999975
No 2
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.4e-24 Score=235.91 Aligned_cols=115 Identities=51% Similarity=0.977 Sum_probs=108.9
Q ss_pred ccccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhhccccccceeeecccccccccccCCccccccccchhhh
Q psy946 173 YCAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLD 252 (714)
Q Consensus 173 ~~~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL~PF~Wq~~~IPvLP~~Lld~leaP~PfliGi~s~~~~ 252 (714)
|.+|++++++.+|+++|+|+||||+|++++.||.||+|+.+|||||+|||+|||+||.+++|+++||+|||||++++.++
T Consensus 175 f~~L~~~~il~l~~~~LlE~rIl~~S~~~~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~l~aP~PfiiGv~~~~~~ 254 (391)
T 3tw8_A 175 FVAVDVNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIE 254 (391)
T ss_dssp HHHSCHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGGGGCSSCEEEEEETTTHH
T ss_pred HHhCCHHHHHHHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhcCcccCcceEeecCHHHHhHhcCCCCEEEEecchhHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcccCCCEEEEecCCCcccCCCCCCCCCCcccc
Q psy946 253 SVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVK 287 (714)
Q Consensus 253 ~~~~~~~~d~v~vDLD~~~i~~~~~dl~~lP~~l~ 287 (714)
.+.+.+.+|+++||||+|+|..+.++++.||.+..
T Consensus 255 ~~~~~~~~dvvvVDLD~~~i~~~~~d~~~LP~~~~ 289 (391)
T 3tw8_A 255 RVKNKSLEDVVMLNVDTNTLESPFSDLNNLPSDVV 289 (391)
T ss_dssp HHHTSCCCSCEEEETTTTEEECSCCTGGGSCHHHH
T ss_pred HhhccCCCCEEEEEcCCCeEeCCCcccccCCHHHH
Confidence 88766789999999999999999999999998643
No 3
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=52.04 E-value=5.3 Score=26.42 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=11.7
Q ss_pred hcCcCCcccccCCc
Q psy946 45 VLKNVPKFAYPCKL 58 (714)
Q Consensus 45 ~~~~I~~FCFP~g~ 58 (714)
..++||..|||+|-
T Consensus 17 ctksippicfpdgr 30 (31)
T 2ab9_A 17 CTKSIPPICFPDGR 30 (31)
T ss_dssp CCSSSSCSSSSCCC
T ss_pred ecccCCCcccCCCC
Confidence 45899999999983
No 4
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=21.50 E-value=69 Score=31.27 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhHHHHhhhccCCCchhHHHHHHHHHhhhc
Q psy946 476 IFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKE 526 (714)
Q Consensus 476 mF~~FIeerl~~~ns~~~f~D~Fe~e~~~~~~~~~~~~~~~y~~w~~~~~~ 526 (714)
.|..|+++| |+++.|-..+..|.. .+-.+.|-.|+.+||+
T Consensus 161 ~l~~YLeeR--------GI~~~la~fl~~y~~---~KE~~EYi~WL~~lk~ 200 (203)
T 1yqf_A 161 CVMTYLEKR--------GVDEKLGEFVVLYSF---WAEQQDYEAWLTTMNK 200 (203)
T ss_dssp HHHHHHHHT--------TCSHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 366888888 778888888877754 2335799999999886
No 5
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=20.71 E-value=63 Score=31.00 Aligned_cols=40 Identities=20% Similarity=0.401 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhHHHHhhhccCCCchhHHHHHHHHHhhhc
Q psy946 476 IFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKE 526 (714)
Q Consensus 476 mF~~FIeerl~~~ns~~~f~D~Fe~e~~~~~~~~~~~~~~~y~~w~~~~~~ 526 (714)
.|..|+++| |+.+.|-.-+..|.. .+-.+.|-.|+.+||+
T Consensus 140 ~l~~yLeeR--------GI~~~la~fl~~y~~---~KEq~EYi~WL~~lk~ 179 (182)
T 3jv1_A 140 SFTSYLSAR--------GVNDTLANFIDQFSL---WSEQADYEEWLSSINK 179 (182)
T ss_dssp HHHHHHHTT--------TCSHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 466788877 778888888877754 2335799999999886
No 6
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=19.55 E-value=68 Score=31.43 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhHHHHhhhccCCCchhHHHHHHHHHhhhc
Q psy946 476 IFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKE 526 (714)
Q Consensus 476 mF~~FIeerl~~~ns~~~f~D~Fe~e~~~~~~~~~~~~~~~y~~w~~~~~~ 526 (714)
+|..|+++| |+.+.|-..+..|.. .+-.+.|-.|+.+|++
T Consensus 165 ~l~~yLeeR--------GI~~~la~fl~~y~~---~KE~~eYi~WL~~lk~ 204 (209)
T 1p32_A 165 HLMDFLADR--------GVDNTFADELVELST---ALEHQEYITFLEDLKS 204 (209)
T ss_dssp HHHHHHHTT--------TCSHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 355788887 778888888877754 3345799999999887
No 7
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=18.86 E-value=2.4e+02 Score=28.11 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=53.5
Q ss_pred ecCCcchhhhhhhhccccceeeecccccchhHHHHhhhhhccCcccccccccCCCcch-------hhhhcCCCCeeeccc
Q psy946 294 AIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDL-------LDYLTAPMPYMVGLP 366 (714)
Q Consensus 294 ~L~~~nil~l~~slLlErrII~~S~~ls~Ls~~v~al~sLl~Pf~W~h~~IPvLP~~l-------ld~L~AP~PfiiGv~ 366 (714)
.++.+++-.+..++|...+||+-|.+......++.++..|| |... ..|.++=.==|+|+.
T Consensus 15 vlG~~~F~~l~~~vl~GnQiIVrg~~~~~~~s~~~~L~~lL-------------P~~c~~l~~~s~~Y~~~~~cnilgls 81 (226)
T 3v42_A 15 VLGAPSFRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTML-------------PVGCVRIIPYSSQYEEAYRCNFLGLS 81 (226)
T ss_dssp HHCHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHGGGS-------------CGGGCCEEEEESSCCCTTTCSEEEEC
T ss_pred HHChHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHhC-------------CHHHHhccccchhhcchhheeeecCC
Confidence 46777788888999999999999999999998888777663 3322 134444344577876
Q ss_pred chhhHHhhhccCCCeEEEecCC
Q psy946 367 EILLDSVRRNELGDVVLLNADT 388 (714)
Q Consensus 367 ~~~~~~~~~~~~~dvvivDLD~ 388 (714)
.+..--..-...+.++++|+|.
T Consensus 82 ~~v~iP~~v~~s~~~~i~~i~~ 103 (226)
T 3v42_A 82 PHVQIPPHVLSSEFAVIVEVHA 103 (226)
T ss_dssp TTCCCCHHHHTCTTEEEEEEEE
T ss_pred CCcccCcccccccceEEEeehh
Confidence 5531111111334567777653
No 8
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=18.03 E-value=93 Score=31.07 Aligned_cols=41 Identities=7% Similarity=0.197 Sum_probs=37.2
Q ss_pred ccChhhHHHHHHHHhcCCcEEEEeCCcchhHHHHHhhhhhh
Q psy946 175 AIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVI 215 (714)
Q Consensus 175 ~Ls~~~Il~l~~alLlErkII~~S~~~s~LS~~v~al~sLL 215 (714)
.++.++.-.+.-++|.+.+||+-|.+...+..++.+|..||
T Consensus 15 vlG~~~F~~l~~~vl~GnQiIVrg~~~~~~~s~~~~L~~lL 55 (226)
T 3v42_A 15 VLGAPSFRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTML 55 (226)
T ss_dssp HHCHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHGGGS
T ss_pred HHChHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHhC
Confidence 47788888999999999999999999999999998888874
No 9
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=13.77 E-value=1.4e+02 Score=29.89 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhhcCCCCCcchhHHHHhhhccCCCchhHHHHHHHHHhhhc
Q psy946 476 IFQQFKEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKE 526 (714)
Q Consensus 476 mF~~FIeerl~~~ns~~~f~D~Fe~e~~~~~~~~~~~~~~~y~~w~~~~~~ 526 (714)
.|..|+++| |+.+.|-.-+..|.. .+-.+.|-.|+.+|++
T Consensus 185 ~l~~yLeeR--------GI~~~la~fl~~y~~---~KEq~EYi~WL~~lk~ 224 (227)
T 3qv0_A 185 SLEAYLESR--------GVNEELASFISAYSE---FKENNEYISWLEKMKK 224 (227)
T ss_dssp HHHHHHHHT--------TCSHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------CCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 366788888 778888888877754 2335799999999886
No 10
>3r9v_A Invasin IPAD; type III secretion system, TIP protein, deoxycholate, cell I; HET: DXC; 1.90A {Shigella flexneri} SCOP: a.250.1.1 PDB: 2jaa_A 2j0n_A
Probab=11.49 E-value=6e+02 Score=26.08 Aligned_cols=19 Identities=21% Similarity=0.531 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcccchhhHHH
Q psy946 579 QQYKEWLRTVGKEGRAFVKT 598 (714)
Q Consensus 579 ~~y~~~~~~~~k~~~~~~~~ 598 (714)
..|+-|..+..-+|.+ +++
T Consensus 238 AsYQAWqAgFnaqk~~-lqs 256 (286)
T 3r9v_A 238 AKYQAWNAGFSAEDET-MKN 256 (286)
T ss_dssp HHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHH-HHH
Confidence 4599999999988888 665
Done!