RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy946
         (714 letters)



>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase,
           guanine exchange factor; 2.10A {Homo sapiens}
          Length = 391

 Score =  194 bits (494), Expect = 1e-55
 Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 9/311 (2%)

Query: 7   SRDNVKHLFECFCEVARPQ-GKEPAWVLQKFPGSYKDESVLKNVPKFAYPCKLE----NT 61
           ++ N    F+   +V       E   VL KFP  + D+ +L++VPKF +P  +E    N 
Sbjct: 6   TKANPDRTFDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERVSQNQ 65

Query: 62  SVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVIISLLPWHESFYKLLNCVVEITNGSSPQ 121
             ++++FVLTD++SK  FG+CR        + I+S LPW E +YKLLN + +        
Sbjct: 66  VGQHFTFVLTDIESKQRFGFCRLTSGGTICLCILSYLPWFEVYYKLLNTLADYLAKELEN 125

Query: 122 LLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPENKNLTEYC-AIEPVN 180
            L   L  +YN  +P+    +  +  +      AP+   LP+IPE++NLTEY  A++  N
Sbjct: 126 DLNETLRSLYNHPVPKANTPVNLSVHS---YFIAPDVTGLPTIPESRNLTEYFVAVDVNN 182

Query: 181 MLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAPM 240
           ML ++ASML+ERRIVI S +LS ++AC+  + +++YPM WQHI+IP++P  LLDY  APM
Sbjct: 183 MLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPM 242

Query: 241 PYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNM 300
           PY++G+   L++ V+   L DVV+LN DTN L +P  DLN LP DV +  +    +    
Sbjct: 243 PYLIGIHSSLIERVKNKSLEDVVMLNVDTNTLESPFSDLNNLPSDVVSALKNKLKKQSTA 302

Query: 301 LHIFASMLYER 311
                +  + R
Sbjct: 303 TGDGVARAFLR 313



 Score =  178 bits (452), Expect = 7e-50
 Identities = 112/253 (44%), Positives = 165/253 (65%), Gaps = 2/253 (0%)

Query: 251 LDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYE 310
           L +    +    V L+  +  +      L T+P+       + A++  NML ++ASML+E
Sbjct: 134 LYNHPVPKANTPVNLSVHSYFIAPDVTGLPTIPESRNLTEYFVAVDVNNMLQLYASMLHE 193

Query: 311 RRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILL 370
           RRIVI S +LS ++AC+  +  ++YPM WQHI+IP++P  LLDY  APMPY++G+   L+
Sbjct: 194 RRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLI 253

Query: 371 DSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRNKTTG--DGVARAFLR 428
           + V+   L DVV+LN DTN L +P  DLN LP DV++ LK +L+ ++T   DGVARAFLR
Sbjct: 254 ERVKNKSLEDVVMLNVDTNTLESPFSDLNNLPSDVVSALKNKLKKQSTATGDGVARAFLR 313

Query: 429 ALVQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFKEERLNML 488
           A   L G YRDAL++  G+ ITF + +FV+ R + M+ FL   ++LQ+F+QF + RL  L
Sbjct: 314 AQAALFGSYRDALRYKPGEPITFCEESFVKHRSSVMKQFLETAINLQLFKQFIDGRLAKL 373

Query: 489 NSGQGFTDEFERE 501
           N+G+GF+D FE E
Sbjct: 374 NAGRGFSDVFEEE 386


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 58.7 bits (141), Expect = 6e-09
 Identities = 112/704 (15%), Positives = 213/704 (30%), Gaps = 184/704 (26%)

Query: 39  SYKDESVLKNVPKFA--YPCK-LENTSVEYYSFVLTDLDSKFTFGYCRHDPKSDTSMVII 95
            YKD  +      F   + CK ++    +    +L+  +          D  S T  +  
Sbjct: 17  QYKD-ILSVFEDAFVDNFDCKDVQ----DMPKSILSKEEIDHIIM--SKDAVSGTLRLFW 69

Query: 96  SLLPWHESFYKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQIIYATSKNTEYTCQA 155
           +LL   E   +                   F+E++   N   Y  ++             
Sbjct: 70  TLLSKQEEMVQ------------------KFVEEVLRIN---YKFLMSPIKT-------- 100

Query: 156 PNQYQLPSIPENKNLTEYCAIEPVNMLH----IFASMLYERRIVITSKR--LSRVSACVQ 209
             + + PS+        Y  IE  + L+    +FA     R       R  L  +     
Sbjct: 101 --EQRQPSMMT----RMY--IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---P 149

Query: 210 AANSVIYPM------------CWQHIFIPLMPRDLLDYLTAPMPYMVGL---PEILLDSV 254
           A N +I  +            C  +     M   +  +L       +     PE +L+ +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLN------LKNCNSPETVLEML 202

Query: 255 RRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCAIEPVNMLHIFASMLYERRIV 314
              +L    L   D N  T+  D  + +   + ++          +  +  S  YE  ++
Sbjct: 203 --QKL----LYQIDPN-WTSRSDHSSNIKLRIHSIQAE-------LRRLLKSKPYENCLL 248

Query: 315 ITSKRLSRV--SACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMVGLPEILLDS 372
           +    L  V  +    A NL     C   I +    + + D+L+A     + L +    +
Sbjct: 249 V----LLNVQNAKAWNAFNL----SC--KILLTTRFKQVTDFLSAATTTHISL-DHHSMT 297

Query: 373 VRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIATLKKQLRN-KTTGDGVARAFLRALV 431
           +  +E+  ++L   D      P + L T P+  ++ + + +R+   T D         L 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 432 QLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQ---QFKEERLNML 488
            +I    + L+                  PA  +        L +F          L+++
Sbjct: 357 TIIESSLNVLE------------------PAEYRKMFD---RLSVFPPSAHIPTILLSLI 395

Query: 489 NSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFSPVFQFKEER 548
                   +           S   V++Q KE               +   S   + K + 
Sbjct: 396 -WFDVIKSDVMVVVNKLHKYSL--VEKQPKE-------------STISIPSIYLELKVKL 439

Query: 549 LNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEW-----LRTVGKEGRA--FVKTWVR 601
            N     +   D +        D        QY        L+ +    R   F   ++ 
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL- 498

Query: 602 ERGKDVRFVYKGLRSKLKEDKHGEAKSHSAPSSPT--QLRKKDISIPLQSNKYSPLESPD 659
               D RF    L  K++ D    A + S     T  QL+     I     KY  L +  
Sbjct: 499 ----DFRF----LEQKIRHD--STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-A 547

Query: 660 L-------------SPPLNI-NMDLMSDLQHVIFKDCSPTSVQK 689
           +             S   ++  + LM++    IF++ +   VQ+
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAE-DEAIFEE-AHKQVQR 589



 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 76/501 (15%), Positives = 141/501 (28%), Gaps = 167/501 (33%)

Query: 6   FSRDNV------KHLFECFCEVARPQGKEPAWVLQKFPGSYK---------DESVLKNVP 50
           F++ NV        L +   E+ RP       ++    GS K            V   + 
Sbjct: 126 FAKYNVSRLQPYLKLRQALLEL-RP---AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 51  ------KFAYPCKLENTSVEYYSFVLTDLDSKFTFGYC-RHDPKSDTSMVIISLLPWHES 103
                      C    T +E    +L  L  +    +  R D  S+  + I S+      
Sbjct: 182 FKIFWLNLKN-CNSPETVLE----MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 104 F-----YKLLNCVVEITNGSSPQLLWTFLEDIYNANIPEYGQI---IYATSKNTEYT--C 153
                 Y+  NC           LL   L ++ NA       +   I  T++  + T   
Sbjct: 237 LLKSKPYE--NC-----------LL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 154 QAPNQYQLPSIPENKNLT---------------------EYCAIEPVNMLHIFASMLYER 192
            A     +     +  LT                     E     P   L I A  + + 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDG 340

Query: 193 RIV------ITSKRLSRV-SACVQAANSVIYPMCWQH--IF-----IPLM---------- 228
                    +   +L+ +  + +       Y   +    +F     IP +          
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 229 ---PRDLLDYLTA-------PMPYMVGLPEILLD-SVRRNELGDV--VLLNADTNVLTTP 275
                 +++ L         P    + +P I L+  V+      +   +++      T  
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 276 HDDLNTLPQDVKNLTEY---------CAIEPVNMLHIFASMLY------ERRIVITSKRL 320
            DDL     D     +Y           IE    + +F  M++      E++I   S   
Sbjct: 461 SDDLIPPYLD-----QYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLEQKIRHDS--- 511

Query: 321 SRVSACVQAANLVIYPMCWQHIFIPLMPRDLLDYLTAPMPYMV---GLPEILLDSVRRNE 377
           +  +A     N +                 L  Y     PY+       E L++++    
Sbjct: 512 TAWNASGSILNTLQ---------------QLKFYK----PYICDNDPKYERLVNAILDF- 551

Query: 378 LGDVVLLNADTNVLTTPHDDL 398
                L   + N++ + + DL
Sbjct: 552 -----LPKIEENLICSKYTDL 567



 Score = 39.8 bits (92), Expect = 0.004
 Identities = 36/245 (14%), Positives = 76/245 (31%), Gaps = 69/245 (28%)

Query: 504 NYMDKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFS----PVFQFKEERLNMLNSGQGFT 559
           ++MD  +G  + QYK+ L    E      F  K        +   KEE  +++ S    +
Sbjct: 5   HHMDFETGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILS-KEEIDHIIMSKDAVS 62

Query: 560 ------DEFEREACNYMDKSSGTVKQQYKEWL----RTVGKEGRAFVKTWVRERGK---D 606
                      +    + K    V +   ++L    +T  ++     + ++ +R +   D
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 607 V-----RFV-----YKGLRSKLKEDK-------HGEA---KS----HSAPSSPTQL---- 638
                   V     Y  LR  L E +        G     K+        S   Q     
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 639 -----------RKKDISIPLQS------NKYSPLESPDLSPPLNINMDLMSDLQHVI--- 678
                        + +   LQ         ++       +  L I+  + ++L+ ++   
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSK 241

Query: 679 -FKDC 682
            +++C
Sbjct: 242 PYENC 246


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 52.4 bits (125), Expect = 5e-07
 Identities = 92/576 (15%), Positives = 169/576 (29%), Gaps = 211/576 (36%)

Query: 55  PCKLENTSVEY--------YSFVLTDLDSKF-------TFGYCRHD-PKSDTSMV----- 93
           P  L + S+E+        + F+ + L  +F       T G+   D P +   +V     
Sbjct: 8   PLTLSHGSLEHVLLVPTASF-FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66

Query: 94  -IISLLPWHE--SFYKLLNCVV-EITNGSSPQLLWTFL--EDIYN--ANIPEYGQIIYAT 145
            + SL+   +   F ++LN  + E  N         +L   DI+   A + +        
Sbjct: 67  YVSSLVEPSKVGQFDQVLNLCLTEFEN--------CYLEGNDIHALAAKLLQENDTTLVK 118

Query: 146 SKN--TEYTCQAPNQYQLP-SIPENKNLTEYCAIEPVNMLHIFA------------SMLY 190
           +K     Y   A    + P     N  L          ++ IF               LY
Sbjct: 119 TKELIKNYI-TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177

Query: 191 E-------RRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTAP---- 239
           +         I  +++ LS +      A   ++              ++L++L  P    
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEK-VFT----QGL------NILEWLENPSNTP 226

Query: 240 -MPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVKNLTEYCA---- 294
              Y++ +P                        ++ P   L  + Q    L  Y      
Sbjct: 227 DKDYLLSIP------------------------ISCP---LIGVIQ----LAHYVVTAKL 255

Query: 295 --IEPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANLVIYPMCWQHIFIPLMPRDLL 352
               P  +           + ++T+         +   +       W+  F   + R  +
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTA-------VAIAETD------SWES-FFVSV-RKAI 300

Query: 353 DYL---------TAPMPYMVGLPEILLDSVRRNELGD----VVLLNADTNVLTTPHDDLN 399
             L           P   +   P IL DS+  NE G     + + N     +    +  N
Sbjct: 301 TVLFFIGVRCYEAYPNTSLP--PSILEDSLENNE-GVPSPMLSISNLTQEQVQDYVNKTN 357

Query: 400 T-LPQD---VIATLKKQLRNKTTGDGVARAFLRALVQLIGGYRDALKFHQGQEITFNDAA 455
           + LP      I+     L N   G        + LV  + G   +L              
Sbjct: 358 SHLPAGKQVEIS-----LVN---GA-------KNLV--VSGPPQSL-------------- 386

Query: 456 FVESRPAAMQPFLRKM-----LDLQIFQQFKEERLNMLNSGQGFTDEFEREA----CNYM 506
                   +   LRK      LD Q    F E +L        F++ F   A     + +
Sbjct: 387 ------YGLNLTLRKAKAPSGLD-QSRIPFSERKLK-------FSNRFLPVASPFHSHLL 432

Query: 507 DKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFSPVF 542
             +S  +     + L  +  S N ++ ++    PV+
Sbjct: 433 VPASDLI----NKDLVKNNVSFNAKDIQI----PVY 460



 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 50/324 (15%), Positives = 96/324 (29%), Gaps = 103/324 (31%)

Query: 15  FECFCEVARPQGKEPAWVLQKFPG-SYKDESVLKNVPKFAYPCKLENTSVEYYSFVLTDL 73
              +   A+  G  P  +     G +   + ++      A      ++   ++  V   +
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT-----AVAIAETDSWESFFVSVRKAI 300

Query: 74  DSKFTFGYCRHD--PKSDTSMVIISLLPWHESFYKLLNCVVEITNGS-SPQL-------- 122
              F  G   ++  P +       SL P       +L   +E   G  SP L        
Sbjct: 301 TVLFFIGVRCYEAYPNT-------SLPP------SILEDSLENNEGVPSPMLSISNLTQE 347

Query: 123 -LWTFLEDIYNANIPEYGQIIYATSKNTEYTCQAPNQYQLPSIPE-----NKNLTEYCAI 176
            +  ++    N+++P   Q +  +  N            +   P+     N  L +  A 
Sbjct: 348 QVQDYVNKT-NSHLPAGKQ-VEISLVN------GAKNLVVSGPPQSLYGLNLTLRKAKA- 398

Query: 177 EPVNMLHIFASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYL 236
                     S L + RI   S+R  + S                + F+P         +
Sbjct: 399 ---------PSGLDQSRIPF-SERKLKFS----------------NRFLP---------V 423

Query: 237 TAPM--PYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTP----HD--DLNTLPQDV-K 287
            +P     +V   +++   + +N     V  NA    +  P     D  DL  L   + +
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNN----VSFNAKD--IQIPVYDTFDGSDLRVLSGSISE 477

Query: 288 NLTEYCAIEPVNM--------LHI 303
            + +     PV           HI
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHI 501



 Score = 31.2 bits (70), Expect = 1.5
 Identities = 24/182 (13%), Positives = 53/182 (29%), Gaps = 59/182 (32%)

Query: 185  FASMLYERRIVITSKRLSRVSACVQAANSVIYPMCWQHIFIPLMPRDLLDYLTA---PMP 241
            +++M++E           +     +  N       ++        + LL   T    P  
Sbjct: 1688 YSAMIFET----IVDGKLKTEKIFKEINEHSTSYTFRS------EKGLLS-ATQFTQPA- 1735

Query: 242  YMVGLPEILLDSV---R--RNE-------------LGDVVLLNADTNVLTTPHDDL---- 279
                   + L         +++             LG+   L +  +V++   + L    
Sbjct: 1736 -------LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI--ESLVEVV 1786

Query: 280  --------NTLPQDVKNLTEY--CAIEPVNMLHIFASMLYERRIVITSKRLSRVSACVQA 329
                      +P+D    + Y   AI P  +   F+    +  +    KR   +   V+ 
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL---VEI 1843

Query: 330  AN 331
             N
Sbjct: 1844 VN 1845


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 36.1 bits (82), Expect = 0.014
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 10/32 (31%)

Query: 637 QLRKKDISIPLQSN-KYSPLESPDLSPPLNIN 667
            L+K      LQ++ K   L + D +P L I 
Sbjct: 21  ALKK------LQASLK---LYADDSAPALAIK 43


>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
           hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
          Length = 678

 Score = 31.4 bits (72), Expect = 1.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 384 LNADTNVLTTPHDDLNTLPQDVIATLKKQLRNK 416
           LN D   L     +L  LP D I +L+K   +K
Sbjct: 183 LNEDDTSLVFSKAELGALPDDFIDSLEKTDEDK 215


>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
           channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
          Length = 674

 Score = 31.0 bits (71), Expect = 1.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 384 LNADTNVLTTPHDDLNTLPQDVIATLKKQLRNK 416
           LN DT  L     +L  LP+D + +L+K    K
Sbjct: 167 LNEDTTFLPFTLQELGGLPEDFLNSLEKMEDGK 199


>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
           genomics, structural genomics consortium, SGC,
           activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
           {Homo sapiens}
          Length = 235

 Score = 29.2 bits (66), Expect = 4.1
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 506 MDKSSGTVKQQYKEWLRTDKESKNGQEFRVKYFSPVFQFKEERLNMLNSGQ 556
            ++ S  +K +    L  D + +   + R     PV +F+ E L  ++   
Sbjct: 29  PEQISMDLKNELMYQLEQDHDLQAILQERELL--PVKKFESEILEAISQNS 77


>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology
           modeling,de novo modeling,ribos proteins,novel ribosomal
           proteins, ribosome; 5.50A {Triticum aestivum} PDB:
           3izr_W
          Length = 130

 Score = 27.2 bits (60), Expect = 8.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 514 KQQYKEWLRTDKESKNGQEFRVKYFS 539
           K   ++WLR    +K+   + ++YF+
Sbjct: 95  KHNVRDWLRVIAANKDRNVYELRYFN 120


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0514    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,777,989
Number of extensions: 649061
Number of successful extensions: 1300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1281
Number of HSP's successfully gapped: 21
Length of query: 714
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 614
Effective length of database: 3,909,693
Effective search space: 2400551502
Effective search space used: 2400551502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)