RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy946
         (714 letters)



>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 337

 Score = 33.9 bits (77), Expect = 0.061
 Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 15/150 (10%)

Query: 491 GQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTDKESKNGQEFRV------KYFSPVFQF 544
            + +TDEF  E    +D          +E +R   E+ +  + R+           V + 
Sbjct: 98  TEVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKK 157

Query: 545 KEERLNMLNSGQGFTDEFEREACNYMDKSSGTVKQQYKEWLRTVGKEGRAFVKTWVRERG 604
           K + +     G   +D  +       D     +   ++            +       +G
Sbjct: 158 KPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAG---------EYADVAGVTKG 208

Query: 605 KDVRFVYKGLRSKLKEDKHGEAKSHSAPSS 634
           K  +   K    + ++ KH          +
Sbjct: 209 KGTQGPVKRWGVQKRKGKHARQGWRRRIGN 238


>d1e7ua3 d.15.1.5 (A:143-321) Phoshoinositide 3-kinase (PI3K) {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 179

 Score = 27.5 bits (61), Expect = 4.2
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 349 RDLLDYLTAPMPYMVGLPEILLDSVRRNELGDVVLLNADTNVLTTPHDDLNTLPQDVIAT 408
           RD   Y   P      LPE LL  +  N +  V+  +  +  +    DD    P  ++ +
Sbjct: 49  RDPKLYAMHPWVTSKPLPEYLLKKITNNCVFIVIHRSTTSQTIKVSADD---TPGTILQS 105

Query: 409 LKKQLRNKTT 418
              ++  K +
Sbjct: 106 FFTKMAKKKS 115


>d2auwa2 d.331.1.1 (A:4-87) Hypothetical protein NE0471 N-terminal
           domain {Nitrosomonas europaea [TaxId: 915]}
          Length = 84

 Score = 25.5 bits (56), Expect = 6.7
 Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 5/51 (9%)

Query: 431 VQLIGGYRDALKFHQGQEITFNDAAFVESRPAAMQPFLRKMLDLQIFQQFK 481
           V+ +  YR    +  G+ +  +    +   P      L  +LD + F +  
Sbjct: 9   VEALAPYRLRTTWSTGEVLEVDVGDILRKIPD-----LAPILDPEAFARVH 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,664,992
Number of extensions: 127733
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 4
Length of query: 714
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 622
Effective length of database: 1,144,436
Effective search space: 711839192
Effective search space used: 711839192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)