BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9472
(647 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 11/200 (5%)
Query: 305 LVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVY 364
++ V++ +F + I + M+ NIYI +LAL D LV T +PF STVY
Sbjct: 24 IITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVT-TTMPFQSTVY 82
Query: 365 TFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRC 424
SWP+G+ +CKI S ++ S+FTLT +S DR+ A+ P++ L R
Sbjct: 83 LMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDF-----RTPLK 137
Query: 425 TILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIM 484
+I IW+ + I ++ L + ++D + + E FP D Y + + I
Sbjct: 138 AKIINICIWLLSSSVGISAIVLGGTKV-REDVD---VIECSLQFPD-DDYSWWDLFMKIC 192
Query: 485 RFLIYYAVPLLIIACFYSLM 504
F+ + +P+LII Y+LM
Sbjct: 193 VFIFAFVIPVLIIIVCYTLM 212
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ A+ P++ L R +I IW+ + I ++ L + ++D
Sbjct: 115 MSVDRYIAVCHPVKALDF-----RTPLKAKIINICIWLLSSSVGISAIVLGGTKV-REDV 168
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM 108
+ + E FP D Y + + I F+ + +P+LII Y+LM
Sbjct: 169 D---VIECSLQFPD-DDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLM 212
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 19/229 (8%)
Query: 327 IFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDIS 386
+ + H M+ NIYI +LAL D LV+LT +PF T WP+G ++CK + +
Sbjct: 149 VILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGFWPFGNALCKTVIAIDYYN 207
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
+ S FTLTA+S DR+ AI P+R L R + + AIW A + +P +
Sbjct: 208 MFTSTFTLTAMSVDRYVAICHPIRALDV-----RTSSKAQAVNVAIWALASVVGVPVAIM 262
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMAR 506
+ +D L E P P P + I FL + VP+L+I+ YSLM R
Sbjct: 263 GSAQV--EDEEIECLVE--IPTPQDYWGPVFA----ICIFLFSFIVPVLVISVCYSLMIR 314
Query: 507 SLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL 555
L L G + R +++ + VL V VF C+ P F L
Sbjct: 315 RL-----RGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVL 358
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 96/222 (43%), Gaps = 31/222 (13%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ AI P+R L R + + AIW A + +P + + +D
Sbjct: 218 MSVDRYVAICHPIRALDV-----RTSSKAQAVNVAIWALASVVGVPVAIMGSAQV--EDE 270
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
L E P P P + I FL + VP+L+I+ YSLM R L
Sbjct: 271 EIECLVE--IPTPQDYWGPVFA----ICIFLFSFIVPVLVISVCYSLMIRRL-----RGV 319
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL--WFYINPTAPDDYNDFWHIL 178
L G + R +++ + VL V VF C+ P F L + P++ +
Sbjct: 320 RLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSE-------TAV 372
Query: 179 RIVGFC--LGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
I+ FC LG++NSC+NPI + F+ F+K FC S+
Sbjct: 373 AILRFCTALGYVNSCLNPILYAFLDENFKACFRK--FCCASA 412
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 33/244 (13%)
Query: 327 IFINHKSMRNVPNIYILSLALGD--LLVILTCVPFTSTVYTFESWPYGESICKISESTKD 384
I + HK MR V N ++++LA + + T V FT V+ W YG CK
Sbjct: 56 IILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH--NEWYYGLFYCKFHNFFPI 113
Query: 385 ISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSM 444
+V S++++TA++ DR+ AI+ PL+ S K +++ IW+ A+L A P
Sbjct: 114 AAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATK-------VVICVIWVLALLLAFP-- 164
Query: 445 TLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTV------IIMRFLIYYAVPLLIIA 498
+ + T C + +P +P + I + LIY+ +PLL+I
Sbjct: 165 -----QGYYSTTETMPSRVVC-----MIEWPEHPNKIYEKVYHICVTVLIYF-LPLLVIG 213
Query: 499 CFYSLMARSLILSTKNMPGELQGQ-TRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWF 557
Y+++ +L S +PG+ + Q+ A++KV K ++ V FA+C+ P H FFL
Sbjct: 214 YAYTVVGITLWAS--EIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLP 271
Query: 558 YINP 561
YINP
Sbjct: 272 YINP 275
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 100/219 (45%), Gaps = 33/219 (15%)
Query: 4 DRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNN 63
DR+ AI+ PL+ S K +++ IW+ A+L A P + + T
Sbjct: 129 DRYMAIIHPLQPRLSATATK-------VVICVIWVLALLLAFP-------QGYYSTTETM 174
Query: 64 TLFESCYPFPPIDGYPNYPRTV------IIMRFLIYYAVPLLIIACFYSLMARSLILSTK 117
C + +P +P + I + LIY+ +PLL+I Y+++ +L S
Sbjct: 175 PSRVVC-----MIEWPEHPNKIYEKVYHICVTVLIYF-LPLLVIGYAYTVVGITLWAS-- 226
Query: 118 NMPGELQGQ-TRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY-NDFW 175
+PG+ + Q+ A++KV K ++ V FA+C+ P H FFL YIN PD Y F
Sbjct: 227 EIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYIN---PDLYLKKFI 283
Query: 176 HILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFC 214
+ + L ++ NPI C++ FR F+ C
Sbjct: 284 QQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC 322
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVG 388
+ + ++ NIYI +LAL D L T +PF S Y E+WP+GE +CK S ++
Sbjct: 40 VRYTKLKTATNIYIFNLALADALATST-LPFQSAKYLMETWPFGELLCKAVLSIDYYNMF 98
Query: 389 VSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSY 448
S+FTLT +S DR+ A+ P++ L K LI IW+ A +P M ++
Sbjct: 99 TSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAK-----LINICIWVLASGVGVPIMVMAV 153
Query: 449 VRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM 504
+ + FP Y + I FL + VP+LII Y LM
Sbjct: 154 TQP------RDGAVVCMLQFPSPSWY--WDTVTKICVFLFAFVVPILIITVCYGLM 201
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ A+ P++ L K LI IW+ A +P M ++ +
Sbjct: 107 MSVDRYIAVCHPVKALDFRTPAKAK-----LINICIWVLASGVGVPIMVMAVTQP----- 156
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM 108
+ FP Y + I FL + VP+LII Y LM
Sbjct: 157 -RDGAVVCMLQFPSPSWY--WDTVTKICVFLFAFVVPILIITVCYGLM 201
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
NG ++ N S + D +R E ++V IV + I + ++
Sbjct: 14 NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 73
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
V N +I SLA DL++ L VPF + + W +G C+ S + V S++TL
Sbjct: 74 TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIWTLC 133
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 134 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 188
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 189 AINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 228
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 135 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 189
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 106
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 190 INCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 228
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 133 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCI 192
K KT+ + F +C+ P +F +N N + I+ +G++NS
Sbjct: 404 EHKALKTLGIIMGTFTLCWLP------FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGF 457
Query: 193 NPIALYCVSGTFRKYFQKYLFCKMSS 218
NP+ +YC S FR FQ+ L + SS
Sbjct: 458 NPL-IYCRSPDFRIAFQELLCLRRSS 482
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 14/178 (7%)
Query: 327 IFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDIS 386
+ + + M+ NIYI +LAL D L T +PF S Y +WP+G +CKI S +
Sbjct: 41 VIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNILCKIVISIDYYN 99
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
+ S+FTL +S DR+ A+ P++ L R R ++ WI + +P M +
Sbjct: 100 MFTSIFTLCTMSVDRYIAVCHPVKALDF-----RTPRNAKIVNVCNWILSSAIGLPVMFM 154
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM 504
+ + + + F P + N + + F+ + +P+LII Y LM
Sbjct: 155 ATTKYRQGSIDCTLTFSH-----PTWYWENLLKICV---FIFAFIMPVLIITVCYGLM 204
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 175 WHILRIVGFC--LGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINS 223
WH FC LG+ NSC+NP+ + F++ F++ FC +S I
Sbjct: 421 WH------FCIALGYTNSCLNPVLYAFLDENFKRCFRE--FCIPTSSTIEQ 463
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
+ HK +R N +L+LA+ DL ++ FT+T+YT + +G + C + +
Sbjct: 64 VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 121
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
+++++L L+ +R+ + P+ G I+ VA W+ A+ CA P + +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 174
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
+ R + SC ID Y + T +I F++++ +PL++I Y
Sbjct: 175 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 225
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
L+ + K + Q +A K+V + V+ +V+ F +C+ P
Sbjct: 226 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIYVIAFLICWLP 268
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 24/157 (15%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
L+ +R+ + P+ G I+ VA W+ A+ CA P + + + R +
Sbjct: 132 LAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGM 184
Query: 61 NNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYSLMARSLILST 116
SC ID Y + T +I F++++ +PL++I Y L+ +
Sbjct: 185 QC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG----QLVFTV 231
Query: 117 KNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 153
K + Q +A K+V + V+ +V+ F +C+ P
Sbjct: 232 KEAAAQQQESATTQKAEKEVTRMVIIYVIAFLICWLP 268
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
+ HK +R N +L+LA+ DL ++ FT+T+YT + +G + C + +
Sbjct: 64 VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 121
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
+++++L L+ +R+ + P+ G I+ VA W+ A+ CA P + +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 174
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
+ R + SC ID Y + T +I F++++ +PL++I Y
Sbjct: 175 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 225
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
L+ + K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 226 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
L+ +R+ + P+ G I+ VA W+ A+ CA P + + + R +
Sbjct: 132 LAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGM 184
Query: 61 NNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYSLMARSLILST 116
SC ID Y + T +I F++++ +PL++I Y L+ +
Sbjct: 185 QC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG----QLVFTV 231
Query: 117 KNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 153
K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 232 KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
+ HK +R N +L+LA+ DL ++ FT+T+YT + +G + C + +
Sbjct: 63 VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 120
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
+++++L L+ +R+ + P+ G I+ VA W+ A+ CA P + +
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 173
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
+ R + SC ID Y + T +I F++++ +PL++I Y
Sbjct: 174 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 224
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
L+ + K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 225 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 267
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
L+ +R+ + P+ G I+ VA W+ A+ CA P + + + R +
Sbjct: 131 LAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGM 183
Query: 61 NNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYSLMARSLILST 116
SC ID Y + T +I F++++ +PL++I Y L+ +
Sbjct: 184 QC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG----QLVFTV 230
Query: 117 KNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 153
K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 231 KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 267
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
+ HK +R N +L+LA+ DL ++ FT+T+YT + +G + C + +
Sbjct: 64 VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 121
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
+++++L L+ +R+ + P+ G I+ VA W+ A+ CA P + +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 174
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
+ R + SC ID Y + T +I F++++ +PL++I Y
Sbjct: 175 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 225
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
L+ + K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 226 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
L+ +R+ + P+ G I+ VA W+ A+ CA P + + + R +
Sbjct: 132 LAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGM 184
Query: 61 NNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYSLMARSLILST 116
SC ID Y + T +I F++++ +PL++I Y L+ +
Sbjct: 185 QC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG----QLVFTV 231
Query: 117 KNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 153
K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 232 KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
+ HK +R N +L+LA+ DL ++ FT+T+YT + +G + C + +
Sbjct: 63 VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLEGFFATLG 120
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
+++++L L+ +R+ + P+ G I+ VA W+ A+ CA P + +
Sbjct: 121 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 173
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
+ R + SC ID Y + T +I F++++ +PL++I Y
Sbjct: 174 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 224
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
L+ + K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 225 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 267
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
L+ +R+ + P+ G I+ VA W+ A+ CA P + + + R +
Sbjct: 131 LAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGM 183
Query: 61 NNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYSLMARSLILST 116
SC ID Y + T +I F++++ +PL++I Y L+ +
Sbjct: 184 QC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG----QLVFTV 230
Query: 117 KNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 153
K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 231 KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 267
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 28/227 (12%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FESWPYGESICKISESTKDIS 386
+ HK +R N +L+LA+ DL ++ FT+T+YT + +G + C + +
Sbjct: 64 VQHKKLRTPLNYILLNLAVADLFMVFG--GFTTTLYTSLHGYFVFGPTGCNLQGFFATLG 121
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL 446
+++++L L+ +R+ + P+ G I+ VA W+ A+ CA P + +
Sbjct: 122 GEIALWSLVVLAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-V 174
Query: 447 SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYS 502
+ R + SC ID Y + T +I F++++ +PL++I Y
Sbjct: 175 GWSRYIPEGMQC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG 225
Query: 503 LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
L+ + K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 226 ----QLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
L+ +R+ + P+ G I+ VA W+ A+ CA P + + + R +
Sbjct: 132 LAIERYVVVCKPMSNFRFG------ENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGM 184
Query: 61 NNNTLFESCYPFPPIDGYPNYPRT----VIIMRFLIYYAVPLLIIACFYSLMARSLILST 116
SC ID Y + T +I F++++ +PL++I Y L+ +
Sbjct: 185 QC-----SC----GIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYG----QLVFTV 231
Query: 117 KNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 153
K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 232 KEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLP 268
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 19/218 (8%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
+ ++ V N +I SLA DL++ L VPF + ++W +G C+ S + V S+
Sbjct: 34 ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASI 93
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
TL ++ DR+FAI P + + + K R IL+V WI + L + + + + RA
Sbjct: 94 ETLCVIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRA 148
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILS 511
+ N E+C F Y I ++ + VPL+I+ YS +
Sbjct: 149 THQEAINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYSRV------- 194
Query: 512 TKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFP 549
+ +LQ + K KT+ + F +C+ P
Sbjct: 195 FQEAKRQLQKIDKFCLKEHKALKTLGIIMGTFTLCWLP 232
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 26/218 (11%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 99 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 153
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
N E+C F Y I ++ + VPL+I+ YS + +
Sbjct: 154 INCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYSRV-------FQEAK 199
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
+LQ + K KT+ + F +C+ P +F +N N + I
Sbjct: 200 RQLQKIDKFCLKEHKALKTLGIIMGTFTLCWLP------FFIVNIVHVIQDNLIRKEVYI 253
Query: 181 VGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
+ +G++NS NP+ +YC S FR FQ+ L + SS
Sbjct: 254 LLNWIGYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSS 290
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
NG ++ N S + D +R E ++V IV + I + ++
Sbjct: 13 NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 72
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
V N +I SLA DL++ L VPF + + W +G C+ S + V S+ TL
Sbjct: 73 TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLC 132
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 133 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 187
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 188 AINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 227
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 134 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 188
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 106
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 189 INCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 227
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 133 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCI 192
K KT+ + F +C+ P +F +N N + I+ +G++NS
Sbjct: 403 EHKALKTLGIIMGTFTLCWLP------FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGF 456
Query: 193 NPIALYCVSGTFRKYFQKYLFCKMSS 218
NP+ +YC S FR FQ+ L + SS
Sbjct: 457 NPL-IYCRSPDFRIAFQELLCLRRSS 481
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
NG ++ N S + D +R E ++V IV + I + ++
Sbjct: 6 NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 65
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
V N +I SLA DL++ L VPF + + W +G C+ S + V S+ TL
Sbjct: 66 TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLC 125
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 126 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 180
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 181 AINCYANETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 220
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 40/239 (16%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 127 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 181
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM---ARSLILSTK 117
N E+C F Y I ++ + VPL+I+ YS + A+ +
Sbjct: 182 INCYANETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID 234
Query: 118 NMPG----------ELQGQTRQIRARK--------KVAKTVLTFVVVFAMCFFPQHFFFL 159
G E G+T R K KT+ + F +C+ P
Sbjct: 235 KSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLP------ 288
Query: 160 WFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
+F +N N + I+ +G++NS NP+ +YC S FR FQ+ L + SS
Sbjct: 289 FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSS 346
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
NG ++ N S + D +R E ++V IV + I + ++
Sbjct: 14 NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 73
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
V N +I SLA DL++ L VPF + + W +G C+ S + V S+ TL
Sbjct: 74 TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLC 133
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 134 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 188
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 189 AINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 228
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 135 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 189
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 106
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 190 INCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 228
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 133 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCI 192
K KT+ + F +C+ P +F +N N + I+ +G++NS
Sbjct: 404 EHKALKTLGIIMGTFTLCWLP------FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGF 457
Query: 193 NPIALYCVSGTFRKYFQKYLFCKMSS 218
NP+ +YC S FR FQ+ L + SS
Sbjct: 458 NPL-IYCRSPDFRIAFQELLCLRRSS 482
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 16/227 (7%)
Query: 280 NGDQIII--NTSLSTDFKPYSERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMR 335
NG ++ N S + D +R E ++V IV + I + ++
Sbjct: 7 NGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQ 66
Query: 336 NVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLT 395
V N +I SLA DL++ L VPF + + W +G C+ S + V S+ TL
Sbjct: 67 TVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLC 126
Query: 396 ALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 127 VIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQE 181
Query: 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 182 AINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 221
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 40/239 (16%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 128 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 182
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM---ARSLILSTK 117
N E+C F Y I ++ + VPL+I+ YS + A+ +
Sbjct: 183 INCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID 235
Query: 118 NMPG----------ELQGQTRQIRARK--------KVAKTVLTFVVVFAMCFFPQHFFFL 159
G E G+T R K KT+ + F +C+ P
Sbjct: 236 KSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLP------ 289
Query: 160 WFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
+F +N N + I+ +G++NS NP+ +YC S FR FQ+ L + SS
Sbjct: 290 FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSS 347
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)
Query: 298 SERLETYLVP--IVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILT 355
+R E ++V IV + I + ++ V N +I SLA DL++ L
Sbjct: 2 QQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLA 61
Query: 356 CVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSG 415
VPF + + W +G C+ S + V S+ TL ++ DR+FAI P + +
Sbjct: 62 VVPFGAACILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFK--YQS 119
Query: 416 IGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYP 475
+ K R IL+V WI + L + + + + RA + N E+C F Y
Sbjct: 120 LLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYA 176
Query: 476 NYPRTVIIMRFLIYYAVPLLIIACFYS 502
I ++ + VPL+I+ YS
Sbjct: 177 -------IASSIVSFYVPLVIMVFVYS 196
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 103 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 157
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 106
N E+C F Y I ++ + VPL+I+ YS
Sbjct: 158 INCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 196
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 135 KVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINP 194
K KT+ + F +C+ P +F +N N + I+ +G++NS NP
Sbjct: 374 KALKTLGIIMGTFTLCWLP------FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNP 427
Query: 195 IALYCVSGTFRKYFQKYLFCKMSS 218
+ +YC S FR FQ+ L + SS
Sbjct: 428 L-IYCRSPDFRIAFQELLCLRRSS 450
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
+ ++ V N +I SLA DL++ L VPF + + W +G C+ S + V S+
Sbjct: 39 ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASI 98
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
TL ++ DR+FAI P + + + K R IL+V WI + L + + + + RA
Sbjct: 99 ETLCVIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRA 153
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
+ N E+C F Y I ++ + VPL+I+ YS
Sbjct: 154 THQEAINCYANETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 197
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 40/239 (16%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 104 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 158
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM---ARSLILSTK 117
N E+C F Y I ++ + VPL+I+ YS + A+ +
Sbjct: 159 INCYANETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID 211
Query: 118 NMPG----------ELQGQTRQIRARK--------KVAKTVLTFVVVFAMCFFPQHFFFL 159
G E G+T R K KT+ + F +C+ P
Sbjct: 212 KSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLP------ 265
Query: 160 WFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
+F +N N + I+ +G++NS NP+ +YC S FR FQ+ L + SS
Sbjct: 266 FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSS 323
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
+ ++ V N +I SLA DL++ L VPF + ++W +G C+ S + V S+
Sbjct: 211 ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASI 270
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
TL ++ DR+FAI P + + + K R IL+V WI + L + + + + RA
Sbjct: 271 ETLCVIAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRA 325
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS 502
+ N E+C F Y I ++ + VPL+I+ YS
Sbjct: 326 THQEAINCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYS 369
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 40/239 (16%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+FAI P + + + K R IL+V WI + L + + + + RA +
Sbjct: 276 IAVDRYFAITSPFK--YQSLLTKNKARVIILMV---WIVSGLTSFLPIQMHWYRATHQEA 330
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM---ARSLILSTK 117
N E+C F Y I ++ + VPL+I+ YS + A+ +
Sbjct: 331 INCYAEETCCDFFTNQAYA-------IASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKID 383
Query: 118 NMPG----------ELQGQTRQIRARK--------KVAKTVLTFVVVFAMCFFPQHFFFL 159
G E G+T R K KT+ + F +C+ P
Sbjct: 384 KSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLP------ 437
Query: 160 WFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
+F +N N + I+ +G++NS NP+ +YC S FR FQ+ L + SS
Sbjct: 438 FFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSS 495
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 37/235 (15%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
+ ++ + N++I SLA DL+V L VPF +T+ +W +G +C++ S + V S+
Sbjct: 40 QRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASI 99
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
TL ++ DR+ AI P R S + RA +I+ +W + L + + + + R
Sbjct: 100 ETLCVIAIDRYLAITSPFRY-QSLMTRARAK----VIICTVWAISALVSFLPIMMHWWR- 153
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILS 511
D + L CY P + R I +I + +PLLI +I
Sbjct: 154 ---DEDPQAL--KCYQDPGCCDFVT-NRAYAIASSIISFYIPLLI-----------MIFV 196
Query: 512 TKNMPGELQGQTRQI-RARK----------KVAKTVLTFVVVFAMCFFPQHFFFL 555
+ E + Q R+I RA K K KT+ + VF +C+ P FFL
Sbjct: 197 ALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLP---FFL 248
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 95/223 (42%), Gaps = 41/223 (18%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+ AI P R S + RA +I+ +W + L + + + + R D
Sbjct: 105 IAIDRYLAITSPFRY-QSLMTRARAK----VIICTVWAISALVSFLPIMMHWWR----DE 155
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
+ L CY P + R I +I + +PLLI +I +
Sbjct: 156 DPQAL--KCYQDPGCCDFVT-NRAYAIASSIISFYIPLLI-----------MIFVALRVY 201
Query: 121 GELQGQTRQI-RARK----------KVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD 169
E + Q R+I RA K K KT+ + VF +C+ P FFL +N D
Sbjct: 202 REAKEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLP---FFLVNIVNVFNRD 258
Query: 170 DYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYL 212
D+ L + LG+ NS +NPI +YC S FRK F++ L
Sbjct: 259 LVPDW---LFVAFNWLGYANSAMNPI-IYCRSPDFRKAFKRLL 297
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 39/237 (16%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391
+ ++ + N++I SLA DL+V L VPF +T+ +W +G +C++ S + V S+
Sbjct: 40 QRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASI 99
Query: 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451
TL ++ DR+ AI P R S + RA +I+ +W + L + + + + R
Sbjct: 100 ETLCVIAIDRYLAITSPFRY-QSLMTRARAK----VIICTVWAISALVSFLPIMMHWWR- 153
Query: 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILS 511
D + L CY P + R I +I + +PLLI +I
Sbjct: 154 ---DEDPQAL--KCYQDPGCCDFVT-NRAYAIASSIISFYIPLLI-----------MIFV 196
Query: 512 TKNMPGELQGQTRQI-RARK------------KVAKTVLTFVVVFAMCFFPQHFFFL 555
+ E + Q R+I RA K K KT+ + VF +C+ P FFL
Sbjct: 197 ALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLP---FFL 250
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 43/225 (19%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+ AI P R S + RA +I+ +W + L + + + + R D
Sbjct: 105 IAIDRYLAITSPFRY-QSLMTRARAK----VIICTVWAISALVSFLPIMMHWWR----DE 155
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
+ L CY P + R I +I + +PLLI +I +
Sbjct: 156 DPQAL--KCYQDPGCCDFVT-NRAYAIASSIISFYIPLLI-----------MIFVALRVY 201
Query: 121 GELQGQTRQI-RARK------------KVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 167
E + Q R+I RA K K KT+ + VF +C+ P FFL +N
Sbjct: 202 REAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLP---FFLVNIVNVFN 258
Query: 168 PDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYL 212
D D+ L + LG+ NS +NPI +YC S FRK F++ L
Sbjct: 259 RDLVPDW---LFVAFNWLGYANSAMNPI-IYCRSPDFRKAFKRLL 299
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 108/238 (45%), Gaps = 38/238 (15%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKISESTKDISVGV 389
+ +++NV N +++SLA D+LV + +PF T+ T F + +G C +
Sbjct: 34 NSNLQNVTNYFVVSLAAADILVGVLAIPFAITISTGFCAACHG---CLFIACFVLVLAQS 90
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWIFAILCAI-PSMTLS 447
S+F+L A++ DR+ AI PLR ++G + G RA I+A W+ + + P + +
Sbjct: 91 SIFSLLAIAIDRYIAIAIPLR--YNGLVTGTRAAG----IIAICWVLSFAIGLTPMLGWN 144
Query: 448 YVRAFKDDTNNN---------TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIA 498
K+ N++ LFE P NY ++ F VPLL++
Sbjct: 145 NCGQPKEGKNHSQGCGEGQVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLML 194
Query: 499 CFYSLM---ARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH 551
Y + AR + + ++ +PGE T Q AK+ +FA+C+ P H
Sbjct: 195 GVYLRIFAAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSAAIIAGLFALCWLPLH 250
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 38/226 (16%)
Query: 1 LSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWIFAILCAI-PSMTLSYVRAFKD 58
++ DR+ AI PLR ++G + G RA I+A W+ + + P + + K+
Sbjct: 98 IAIDRYIAIAIPLR--YNGLVTGTRAAG----IIAICWVLSFAIGLTPMLGWNNCGQPKE 151
Query: 59 DTNNN---------TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM- 108
N++ LFE P NY ++ F VPLL++ Y +
Sbjct: 152 GKNHSQGCGEGQVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLMLGVYLRIF 201
Query: 109 --ARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYIN 164
AR + + ++ +PGE T Q AK+ +FA+C+ P H + +
Sbjct: 202 AAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSAAIIAGLFALCWLPLHIINCFTFFC 259
Query: 165 PTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQK 210
P + W L + L NS +NP FR+ F+K
Sbjct: 260 PDC--SHAPLW--LMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRK 301
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 303 TYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTST 362
T VP V+ +F +FI ++ +Y+L LA D+L + + +PF +
Sbjct: 20 TLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFV-SVLPFKIS 78
Query: 363 VY-TFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRA 421
Y + W +G +C+ + ++ S+ +T +S DRF A+V P++ L G+ +
Sbjct: 79 YYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRAS 138
Query: 422 TRCTILIVAAIWIFAILCAIP 442
C AIW AI +P
Sbjct: 139 FTCL-----AIWALAIAGVVP 154
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 146 VFAMCFFPQHFFFLWFY--INPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGT 203
+F +CF P + + Y ++ T+ + F ++L + C+ I+ CI+P+ Y S
Sbjct: 398 IFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCV---CVSSISCCIDPLIYYYASSE 454
Query: 204 FRKYFQKYLFCKMSS 218
++Y L CK SS
Sbjct: 455 CQRYVYSILCCKESS 469
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 40/239 (16%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKISESTKDISVGV 389
+ +++NV N +++SLA D+ V + +PF T+ T F + +G C +
Sbjct: 34 NSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHG---CLFIACFVLVLTQS 90
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWI--FAIL-------- 438
S+F+L A++ DR+ AI PLR ++G + G RA I+A W+ FAI
Sbjct: 91 SIFSLLAIAIDRYIAIRIPLR--YNGLVTGTRAKG----IIAICWVLSFAIGLTPMLGWN 144
Query: 439 -CAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII 497
C P + + + LFE P NY ++ F VPLL++
Sbjct: 145 NCGQPKEGKQHSQGCGEG-QVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLM 193
Query: 498 ACFYS---LMARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH 551
Y L AR + + ++ +PGE T Q AK++ V +FA+C+ P H
Sbjct: 194 LGVYLRIFLAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSLAIIVGLFALCWLPLH 250
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 40/227 (17%)
Query: 1 LSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWI--FAIL---------CAIPSM 48
++ DR+ AI PLR ++G + G RA I+A W+ FAI C P
Sbjct: 98 IAIDRYIAIRIPLR--YNGLVTGTRAKG----IIAICWVLSFAIGLTPMLGWNNCGQPKE 151
Query: 49 TLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS-- 106
+ + + LFE P NY ++ F VPLL++ Y
Sbjct: 152 GKQHSQGCGEG-QVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLMLGVYLRI 200
Query: 107 -LMARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYI 163
L AR + + ++ +PGE T Q AK++ V +FA+C+ P H + +
Sbjct: 201 FLAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSLAIIVGLFALCWLPLHIINCFTFF 258
Query: 164 NPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQK 210
P + W L + L NS +NP FR+ F+K
Sbjct: 259 CPDC--SHAPLW--LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 301
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 40/239 (16%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKISESTKDISVGV 389
+ +++NV N +++S A D+LV + +PF + T F + +G C +
Sbjct: 34 NSNLQNVTNYFVVSAAAADILVGVLAIPFAIAISTGFCAACHG---CLFIACFVLVLTAS 90
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWI--FAIL-------- 438
S+F+L A++ DR+ AI PLR ++G + G RA I+A W+ FAI
Sbjct: 91 SIFSLLAIAIDRYIAIRIPLR--YNGLVTGTRAKG----IIAICWVLSFAIGLTPMLGWN 144
Query: 439 -CAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII 497
C P ++ + + LFE P NY ++ F VPLL++
Sbjct: 145 NCGQPKEGKAHSQGCGEG-QVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLM 193
Query: 498 ACFYS---LMARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH 551
Y L AR + + ++ +PGE T Q AK++ V +FA+C+ P H
Sbjct: 194 LGVYLRIFLAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSLAIIVGLFALCWLPLH 250
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 92/227 (40%), Gaps = 40/227 (17%)
Query: 1 LSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWI--FAIL---------CAIPSM 48
++ DR+ AI PLR ++G + G RA I+A W+ FAI C P
Sbjct: 98 IAIDRYIAIRIPLR--YNGLVTGTRAKG----IIAICWVLSFAIGLTPMLGWNNCGQPKE 151
Query: 49 TLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS-- 106
++ + + LFE P NY ++ F VPLL++ Y
Sbjct: 152 GKAHSQGCGEG-QVACLFEDVVPM-------NY---MVYFNFFACVLVPLLLMLGVYLRI 200
Query: 107 -LMARSLI--LSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYI 163
L AR + + ++ +PGE T Q AK++ V +FA+C+ P H + +
Sbjct: 201 FLAARRQLKQMESQPLPGERARSTLQ--KEVHAAKSLAIIVGLFALCWLPLHIINCFTFF 258
Query: 164 NPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQK 210
P + W L + L NS +NP FR+ F+K
Sbjct: 259 CPDC--SHAPLW--LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 301
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 330 NHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGV 389
+ + + V N+YI+SL++ DL+V +P W G +C S ++
Sbjct: 35 SERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCLFWLSMDYVASTA 94
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIP 442
S+F++ L DR+ ++ PLR L + TR + I+ A W + L IP
Sbjct: 95 SIFSVFILCIDRYRSVQQPLRYLKY----RTKTRASATILGA-WFLSFLWVIP 142
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 133 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCI 192
+K AK + + F +C+ P +F++F + + N+ H+ I LG+INS +
Sbjct: 368 ERKAAKQLGFIMAAFILCWIP---YFIFFMVIAFCKNCCNEHLHMFTI---WLGYINSTL 421
Query: 193 NPIALYCVSGTFRKYFQKYLFCKMSSKI 220
NP+ + F+K F++ L + +
Sbjct: 422 NPLIYPLCNENFKKTFKRILHIRSGENL 449
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 294 FKPYSERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVI 353
F+ + +P +++ IF + K +R++ + Y L L++ DLL +
Sbjct: 39 FREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV 98
Query: 354 LTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413
+T +PF + V +W +G +CK +++ SV+ L +S DR+ AIV
Sbjct: 99 IT-LPFWA-VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
Query: 414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD 454
R ++ +WI A+L IP + V D
Sbjct: 157 P-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 294 FKPYSERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVI 353
F+ + +P +++ IF + K +R++ + Y L L++ DLL +
Sbjct: 39 FREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV 98
Query: 354 LTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413
+T +PF + V +W +G +CK +++ SV+ L +S DR+ AIV
Sbjct: 99 IT-LPFWA-VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
Query: 414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD 454
R ++ +WI A+L IP + V D
Sbjct: 157 P-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 294 FKPYSERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVI 353
F+ + +P +++ IF + K +R++ + Y L L++ DLL +
Sbjct: 39 FREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFV 98
Query: 354 LTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413
+T +PF + V +W +G +CK +++ SV+ L +S DR+ AIV
Sbjct: 99 IT-LPFWA-VDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQR 156
Query: 414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD 454
R ++ +WI A+L IP + V D
Sbjct: 157 P-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADD 192
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 329 INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVY---TFESWPYGESICKISESTKDI 385
+ ++++ N ++SLA+ DLLV +P+ VY T W + C + + +
Sbjct: 64 LKERALQTTTNYLVVSLAVADLLVATLVMPWV--VYLEVTGGVWNFSRICCDVFVTLDVM 121
Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIP 442
S++ L A+S DR+ A+V P+ H G+ + R L++ A+W+ A + P
Sbjct: 122 MCTASIWNLCAISIDRYTAVVMPVHYQHG--TGQSSCRRVALMITAVWVLAFAVSCP 176
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 19/89 (21%)
Query: 133 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINP------TAPDDYN-DFWHILRIVGFCL 185
KK + V + F +C+ P FFL +N +P+ Y+ W L
Sbjct: 396 EKKATQMVAIVLGAFIVCWLP---FFLTHVLNTHCQTCHVSPELYSATTW---------L 443
Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFC 214
G++NS +NP+ + FRK F K L C
Sbjct: 444 GYVNSALNPVIYTTFNIEFRKAFLKILSC 472
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVS 390
+K ++ V N ++LSLA DL++ + + +T W G C + S ++ S
Sbjct: 40 NKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLSIDYVASNAS 99
Query: 391 VFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSM 444
V L +S DR+F+I PL KR T+ +++ W+ + + P++
Sbjct: 100 VMNLLVISFDRYFSITRPLT-----YRAKRTTKRAGVMIGLAWVISFVLWAPAI 148
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 133 RKKVAKTVLTFVVVFAMCFFPQHFFFLW-FYINPTAPDDYNDFWHILRIVGFCLGFINSC 191
KK A+T+ ++ F + + P + L + + P Y W++ G+ L +INS
Sbjct: 369 EKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTY---WNL----GYWLCYINST 421
Query: 192 INPIALYCVSGTFRKYFQKYLFCK 215
+NP+ + TFR F+ L C+
Sbjct: 422 VNPVCYALCNKTFRTTFKTLLLCQ 445
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 327 IFINHKSMRNVPNIYILSLALGDL-LVILTCVPFTSTVYTFESWPYGESICKISESTKDI 385
+F KS++ N++I++LA D ++ P + + W +G + CK+ I
Sbjct: 58 LFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGI 117
Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT 445
+S+ T+ +S DR+ I P+ K + R +++ +W++++L AI
Sbjct: 118 FGFMSIMTMAMISIDRYNVIGRPM-----AASKKMSHRRAFIMIIFVWLWSVLWAIGP-- 170
Query: 446 LSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII-ACFYSLM 504
+ + T L + + D + R+ I+ F++ + P+LII C++
Sbjct: 171 ---IFGWGAYTLEGVLCNCSFDYISRD---STTRSNILCMFILGFFGPILIIFFCYF--- 221
Query: 505 ARSLILSTKNMPGELQGQTRQIRARK 530
++++S N E+ +++ A++
Sbjct: 222 --NIVMSVSNHEKEMAAMAKRLNAKE 245
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 20/206 (9%)
Query: 327 IFINHKSMRNVPNIYILSLALGDL-LVILTCVPFTSTVYTFESWPYGESICKISESTKDI 385
+F KS++ N++I++LA D ++ P + + W +G + CK+ I
Sbjct: 57 LFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGI 116
Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT 445
+S+ T+ +S DR+ I P+ K + R +++ +W++++L AI
Sbjct: 117 FGFMSIMTMAMISIDRYNVIGRPM-----AASKKMSHRRAFIMIIFVWLWSVLWAIGP-- 169
Query: 446 LSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLII-ACFYSLM 504
+ + T L + + D + R+ I+ F++ + P+LII C++
Sbjct: 170 ---IFGWGAYTLEGVLCNCSFDYISRD---STTRSNILCMFILGFFGPILIIFFCYF--- 220
Query: 505 ARSLILSTKNMPGELQGQTRQIRARK 530
++++S N E+ +++ A++
Sbjct: 221 --NIVMSVSNHEKEMAAMAKRLNAKE 244
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFES----WPYGESICKISESTKDIS 386
++ ++ V N ++ SLA DL++ + F+ +YT + WP G +C + + +
Sbjct: 51 NRHLQTVNNYFLFSLACADLIIGV----FSMNLYTLYTVIGYWPLGPVVCDLWLALDYVV 106
Query: 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSM 444
SV L +S DR+F + PL KR T+ +++AA W+ + + P++
Sbjct: 107 SNASVMNLLIISFDRYFCVTKPLT-----YPVKRTTKMAGMMIAAAWVLSFILWAPAI 159
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 133 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINP-TAPDDYNDFWHILRIVGFCLGFINSC 191
KKV +T+L ++ F + + P + L IN AP N W I G+ L +INS
Sbjct: 383 EKKVTRTILAILLAFIITWAPYNVMVL---INTFCAPCIPNTVWTI----GYWLCYINST 435
Query: 192 INPIALYCVSGTFRKYFQKYLFC 214
INP + TF+K F+ L C
Sbjct: 436 INPACYALCNATFKKTFKHLLMC 458
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 124 QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWF-YINPTAPDDYN-DFWHILRIV 181
G + +R VA+ V V+ F +C+ P H L F YI+ + DF+H ++
Sbjct: 398 SGSVQALRHGVLVARAV---VIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYML 454
Query: 182 GFCLGFINSCINPIALYCVSGTFRKYFQKYLFC 214
L + +S INPI VS FR+ F L C
Sbjct: 455 TNALAYASSAINPILYNLVSANFRQVFLSTLAC 487
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 332 KSMRNVPNIYILSLALGDLLVILTCVPFT--STVYTFESWPYGESICKISESTKDISVGV 389
+S+++ + ++ SLAL DLL++L +P + ++ W +G++ C+ +D
Sbjct: 64 QSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYA 123
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSM-TLSY 448
+ + +LS R+ AI P K + + R + ++AIW+ + L AIP + T+
Sbjct: 124 TALNVASLSVARYLAICHPF-KAKTLMSRSRTKK----FISAIWLASALLAIPMLFTMGL 178
Query: 449 VRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSL 508
D T+ L C P +D + VI + + + P+L+I+ +++A L
Sbjct: 179 QNRSADGTHPGGLV--CTPI--VD--TATVKVVIQVNTFMSFLFPMLVISILNTVIANKL 232
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKISESTKDISVGV 389
+ +++NV N +++SLA D+ V + +PF T+ T F + +G C +
Sbjct: 49 NSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHG---CLFIACFVLVLTQS 105
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWIFAILCAIPSM 444
S+F+L A++ DR+ AI PLR ++G + G RA I+A W+ + + M
Sbjct: 106 SIFSLLAIAIDRYIAIRIPLR--YNGLVTGTRAKG----IIAICWVLSFAIGLTPM 155
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 11/116 (9%)
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT-FESWPYGESICKISESTKDISVGV 389
+ +++NV N +++SLA D+ V + +PF T+ T F + +G C +
Sbjct: 59 NSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTGFCAACHG---CLFIACFVLVLTQS 115
Query: 390 SVFTLTALSADRFFAIVDPLRKLHSG-IGGKRATRCTILIVAAIWIFAILCAIPSM 444
S+F+L A++ DR+ AI PLR ++G + G RA I+A W+ + + M
Sbjct: 116 SIFSLLAIAIDRYIAIRIPLR--YNGLVTGTRAKG----IIAICWVLSFAIGLTPM 165
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 103/258 (39%), Gaps = 28/258 (10%)
Query: 298 SERLETYLVPIVFAFIFXXXXXXXXXXXXIFINHKSMRNVPNIYILSLALGDLLVILTCV 357
+E L Y+V I +A +F + + + R+V ++Y+L+LAL DLL LT
Sbjct: 6 TETLNKYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLP 65
Query: 358 PFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIG 417
+ ++ W +G +CK+ K+++ + L +S DR+ AIV R L
Sbjct: 66 IWAAS--KVNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTL----- 118
Query: 418 GKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNY 477
+ + W ++ ++P F+ + N CY D +
Sbjct: 119 -TQKRHLVKFVCLGCWGLSMNLSLPFFL------FRQAYHPNNSSPVCYEVLGNDT-AKW 170
Query: 478 PRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVL 537
+ I+ + VPL ++ Y R+L K G+ + + + +
Sbjct: 171 RMVLRILPHTFGFIVPLFVMLFCYGFTLRTLF---KAHMGQ----------KHRAMRVIF 217
Query: 538 TFVVVFAMCFFPQHFFFL 555
V++F +C+ P + L
Sbjct: 218 AVVLIFLLCWLPYNLVLL 235
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 32/217 (14%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ AIV R L + + W ++ ++P F+
Sbjct: 103 ISVDRYLAIVHATRTL------TQKRHLVKFVCLGCWGLSMNLSLPFFL------FRQAY 150
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
+ N CY D + + I+ + VPL ++ Y R+L K
Sbjct: 151 HPNNSSPVCYEVLGNDT-AKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLF---KAHM 206
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPT-----APDDYNDFW 175
G+ + + + + V++F +C+ P + L + T + + N+
Sbjct: 207 GQ----------KHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIG 256
Query: 176 HILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYL 212
L LGF++SC+NPI + FR F K L
Sbjct: 257 RALDATEI-LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|3RZ2|A Chain A, Crystal Of Prl-1 Complexed With Peptide
pdb|3RZ2|B Chain B, Crystal Of Prl-1 Complexed With Peptide
Length = 189
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 224 RNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKIT 279
R ++ R +RP+ T K THNP N +N F + VT + + T
Sbjct: 17 RGSHMARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT 72
>pdb|1X24|A Chain A, Prl-1 (Ptp4a)
pdb|1X24|B Chain B, Prl-1 (Ptp4a)
Length = 180
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 224 RNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKIT 279
R ++ R +RP+ T K THNP N +N F + VT + + T
Sbjct: 17 RGSHMARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT 72
>pdb|1ZCL|A Chain A, Prl-1 C104s Mutant In Complex With Sulfate
pdb|1ZCL|B Chain B, Prl-1 C104s Mutant In Complex With Sulfate
Length = 180
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 224 RNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKIT 279
R ++ R +RP+ T K THNP N +N F + VT + + T
Sbjct: 17 RGSHMARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEAT 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.140 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,081,498
Number of Sequences: 62578
Number of extensions: 697157
Number of successful extensions: 1651
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1496
Number of HSP's gapped (non-prelim): 100
length of query: 647
length of database: 14,973,337
effective HSP length: 105
effective length of query: 542
effective length of database: 8,402,647
effective search space: 4554234674
effective search space used: 4554234674
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)