Query psy9472
Match_columns 647
No_of_seqs 379 out of 4474
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 20:17:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 9.4E-43 2E-47 327.5 15.4 301 298-608 30-336 (423)
2 PHA03234 DNA packaging protein 100.0 3.3E-37 7.2E-42 306.2 15.8 271 299-602 28-311 (338)
3 PHA03235 DNA packaging protein 100.0 7.4E-36 1.6E-40 302.9 17.2 278 300-600 29-316 (409)
4 KOG4220|consensus 100.0 1.3E-36 2.9E-41 284.6 5.3 294 299-611 26-491 (503)
5 PHA02834 chemokine receptor-li 100.0 3.5E-35 7.6E-40 292.5 15.3 272 303-606 28-308 (323)
6 PHA02638 CC chemokine receptor 100.0 2.7E-34 5.8E-39 293.2 16.7 283 300-605 95-395 (417)
7 PHA03087 G protein-coupled che 100.0 1.6E-32 3.5E-37 276.8 16.7 282 300-608 37-324 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 1.3E-30 2.9E-35 253.8 13.6 255 320-590 1-257 (257)
9 KOG4219|consensus 100.0 1.3E-28 2.8E-33 232.4 16.1 204 1-216 129-337 (423)
10 PHA03235 DNA packaging protein 99.9 5.6E-26 1.2E-30 230.8 15.6 196 1-215 126-324 (409)
11 KOG2087|consensus 99.9 6.1E-28 1.3E-32 225.6 -0.5 288 286-603 7-302 (363)
12 PHA03234 DNA packaging protein 99.9 4.5E-25 9.8E-30 219.4 14.7 183 1-212 126-314 (338)
13 PHA02834 chemokine receptor-li 99.9 1.7E-24 3.6E-29 215.9 12.1 189 1-216 119-311 (323)
14 KOG4220|consensus 99.9 1.8E-24 3.8E-29 203.6 10.8 199 1-220 124-493 (503)
15 PHA02638 CC chemokine receptor 99.9 1.4E-23 3.1E-28 214.5 13.2 196 1-215 189-398 (417)
16 PHA03087 G protein-coupled che 99.9 3.5E-22 7.6E-27 201.6 14.3 194 1-219 132-328 (335)
17 PF00001 7tm_1: 7 transmembran 99.8 8.2E-20 1.8E-24 177.6 12.4 179 1-197 78-257 (257)
18 PF10320 7TM_GPCR_Srsx: Serpen 99.7 2.3E-18 5.1E-23 164.7 7.6 254 315-604 2-256 (257)
19 PF10324 7TM_GPCR_Srw: Serpent 99.7 7.9E-17 1.7E-21 161.1 11.9 280 313-602 6-317 (318)
20 PF10328 7TM_GPCR_Srx: Serpent 99.5 7.4E-14 1.6E-18 136.0 14.0 228 313-556 3-232 (274)
21 KOG2087|consensus 99.5 1.5E-15 3.2E-20 143.1 0.1 183 1-215 125-307 (363)
22 PF10324 7TM_GPCR_Srw: Serpent 99.5 1.9E-13 4.1E-18 136.8 13.7 205 1-215 99-318 (318)
23 PF05296 TAS2R: Mammalian tast 99.4 5.3E-12 1.1E-16 123.5 13.0 240 303-551 6-251 (303)
24 PF05462 Dicty_CAR: Slime mold 99.3 6.7E-11 1.4E-15 114.0 15.9 253 304-602 7-265 (303)
25 PF10323 7TM_GPCR_Srv: Serpent 99.2 4.3E-11 9.3E-16 116.2 9.0 260 315-599 6-280 (283)
26 PF10323 7TM_GPCR_Srv: Serpent 99.1 5E-10 1.1E-14 108.8 8.8 187 1-214 96-283 (283)
27 PF10320 7TM_GPCR_Srsx: Serpen 99.0 1.2E-09 2.6E-14 104.8 7.6 176 1-212 82-257 (257)
28 PF10321 7TM_GPCR_Srt: Serpent 98.8 6.6E-08 1.4E-12 94.1 14.5 266 300-603 29-308 (313)
29 PF10328 7TM_GPCR_Srx: Serpent 98.8 1.4E-08 3.1E-13 98.9 8.9 182 1-211 88-272 (274)
30 PF03402 V1R: Vomeronasal orga 98.6 1.2E-07 2.6E-12 89.0 9.2 218 335-560 8-227 (265)
31 PF10317 7TM_GPCR_Srd: Serpent 98.6 3.9E-07 8.5E-12 89.5 13.3 268 308-597 3-291 (292)
32 PF11710 Git3: G protein-coupl 98.5 9.5E-07 2.1E-11 80.4 12.0 165 333-513 31-199 (201)
33 PF05296 TAS2R: Mammalian tast 98.4 4.2E-06 9.2E-11 82.1 12.6 123 85-216 180-303 (303)
34 PF02101 Ocular_alb: Ocular al 98.2 0.00025 5.4E-09 68.4 20.1 185 339-557 68-267 (405)
35 PF10326 7TM_GPCR_Str: Serpent 98.1 1.5E-05 3.2E-10 79.3 11.0 268 310-596 5-306 (307)
36 PF10292 7TM_GPCR_Srab: Serpen 98.1 0.00011 2.4E-09 73.2 15.6 241 303-564 16-264 (324)
37 PF10327 7TM_GPCR_Sri: Serpent 98.1 5.8E-05 1.3E-09 74.2 13.1 267 304-589 9-291 (303)
38 PF04789 DUF621: Protein of un 98.0 0.00028 6E-09 64.8 15.7 236 301-558 10-251 (305)
39 PF02118 Srg: Srg family chemo 98.0 9.7E-05 2.1E-09 72.3 14.0 211 314-552 8-229 (275)
40 PF10321 7TM_GPCR_Srt: Serpent 98.0 1.3E-05 2.8E-10 78.2 7.2 182 1-218 127-311 (313)
41 KOG4193|consensus 97.8 0.00025 5.3E-09 75.3 13.5 250 309-610 328-584 (610)
42 PF10316 7TM_GPCR_Srbc: Serpen 97.8 0.001 2.2E-08 63.5 15.5 107 304-411 6-116 (273)
43 PF00002 7tm_2: 7 transmembran 97.8 9.6E-06 2.1E-10 77.6 1.7 202 312-551 9-215 (242)
44 PF05462 Dicty_CAR: Slime mold 97.7 0.00056 1.2E-08 66.5 12.0 73 140-220 204-276 (303)
45 PF10319 7TM_GPCR_Srj: Serpent 97.1 0.043 9.4E-07 52.7 17.0 102 309-410 10-122 (310)
46 PF02117 7TM_GPCR_Sra: Serpent 97.0 0.025 5.4E-07 56.3 15.8 232 301-556 18-258 (328)
47 PF03125 Sre: C. elegans Sre G 96.9 0.062 1.3E-06 54.6 17.4 32 379-410 126-157 (365)
48 KOG4564|consensus 96.8 0.026 5.7E-07 57.6 13.8 253 308-605 149-417 (473)
49 PF02118 Srg: Srg family chemo 96.6 0.011 2.4E-07 57.7 9.4 173 1-207 102-274 (275)
50 PF10318 7TM_GPCR_Srh: Serpent 96.6 0.044 9.6E-07 54.3 13.7 240 305-560 5-260 (302)
51 PF10322 7TM_GPCR_Sru: Serpent 96.6 0.14 3E-06 50.0 16.3 157 374-544 101-257 (307)
52 KOG4193|consensus 96.6 0.036 7.7E-07 59.3 13.2 163 24-220 422-587 (610)
53 PF03402 V1R: Vomeronasal orga 96.5 0.0032 7E-08 59.5 4.6 173 24-208 90-263 (265)
54 PF10292 7TM_GPCR_Srab: Serpen 96.5 0.086 1.9E-06 52.7 14.7 85 126-213 221-305 (324)
55 PF10326 7TM_GPCR_Str: Serpent 96.4 0.0019 4.1E-08 64.3 2.8 116 80-209 191-307 (307)
56 PF01534 Frizzled: Frizzled/Sm 96.3 0.22 4.8E-06 49.1 16.1 149 306-468 11-172 (328)
57 PF10317 7TM_GPCR_Srd: Serpent 96.2 0.04 8.7E-07 54.2 10.6 98 100-210 195-292 (292)
58 PF10318 7TM_GPCR_Srh: Serpent 96.0 0.089 1.9E-06 52.1 12.1 105 97-214 197-302 (302)
59 PF02101 Ocular_alb: Ocular al 95.8 0.24 5.3E-06 48.5 13.3 65 95-161 199-267 (405)
60 PF03125 Sre: C. elegans Sre G 95.7 0.18 4E-06 51.2 13.0 41 176-216 283-323 (365)
61 PF10327 7TM_GPCR_Sri: Serpent 95.5 0.033 7.1E-07 54.9 6.6 107 88-207 196-302 (303)
62 KOG4564|consensus 95.0 0.23 5E-06 50.9 11.0 158 26-218 266-423 (473)
63 PF03383 Serpentine_r_xa: Caen 94.8 0.073 1.6E-06 45.3 5.7 123 338-467 3-128 (153)
64 PF02076 STE3: Pheromone A rec 94.6 0.73 1.6E-05 44.6 13.0 214 315-558 5-222 (283)
65 PF11970 Git3_C: G protein-cou 93.2 0.34 7.3E-06 36.0 6.0 69 130-203 4-73 (76)
66 PF11970 Git3_C: G protein-cou 91.8 0.7 1.5E-05 34.3 6.1 67 526-596 4-73 (76)
67 PF04789 DUF621: Protein of un 90.2 0.98 2.1E-05 42.2 6.8 167 24-211 129-295 (305)
68 PF13853 7tm_4: Olfactory rece 88.4 0.0098 2.1E-07 51.3 -7.1 115 30-159 4-119 (144)
69 PF06681 DUF1182: Protein of u 87.5 3.8 8.2E-05 36.6 8.2 39 372-410 113-151 (226)
70 PF10319 7TM_GPCR_Srj: Serpent 87.3 6.2 0.00013 38.3 10.3 74 127-207 235-309 (310)
71 PF02175 7TM_GPCR_Srb: Serpent 86.8 7.5 0.00016 35.9 9.9 41 370-410 79-119 (236)
72 PF13853 7tm_4: Olfactory rece 85.7 0.015 3.3E-07 50.1 -7.4 118 426-559 4-123 (144)
73 PF10316 7TM_GPCR_Srbc: Serpen 81.7 3.8 8.2E-05 39.5 6.2 17 1-17 102-118 (273)
74 PF10322 7TM_GPCR_Sru: Serpent 77.9 7.6 0.00017 38.1 7.1 130 5-148 128-257 (307)
75 PF02117 7TM_GPCR_Sra: Serpent 76.2 52 0.0011 32.9 12.6 34 130-163 228-261 (328)
76 PF00002 7tm_2: 7 transmembran 68.7 1.6 3.5E-05 41.5 0.0 116 2-154 94-214 (242)
77 PF06454 DUF1084: Protein of u 49.9 2.5E+02 0.0055 27.3 15.8 28 534-561 206-233 (281)
78 PF02076 STE3: Pheromone A rec 49.0 45 0.00097 32.4 6.1 27 135-162 196-222 (283)
79 PF03383 Serpentine_r_xa: Caen 47.9 11 0.00024 32.3 1.6 46 1-51 65-110 (153)
80 PF00003 7tm_3: 7 transmembran 38.1 1.4E+02 0.0031 27.9 7.8 28 371-398 51-78 (238)
81 PF09889 DUF2116: Uncharacteri 31.3 87 0.0019 22.0 3.6 23 130-152 32-54 (59)
82 PF01534 Frizzled: Frizzled/Sm 30.2 3E+02 0.0066 27.4 8.6 27 27-53 134-160 (328)
83 PF11710 Git3: G protein-coupl 25.7 1.5E+02 0.0033 27.1 5.3 27 91-117 173-199 (201)
84 PF10325 7TM_GPCR_Srz: Serpent 22.5 6.8E+02 0.015 23.9 9.7 53 383-439 89-141 (267)
85 PF02175 7TM_GPCR_Srb: Serpent 22.0 26 0.00056 32.5 -0.4 14 1-14 106-119 (236)
86 KOG2575|consensus 21.2 87 0.0019 31.6 2.9 24 133-156 254-277 (510)
87 PF15086 UPF0542: Uncharacteri 20.7 88 0.0019 22.8 2.1 27 88-114 23-50 (74)
No 1
>KOG4219|consensus
Probab=100.00 E-value=9.4e-43 Score=327.54 Aligned_cols=301 Identities=24% Similarity=0.364 Sum_probs=246.4
Q ss_pred chhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccc
Q psy9472 298 SERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICK 377 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~ 377 (647)
.+.+...+..+++.++.+++++||.+|++++..+|++|+.+|+|++|||+||+++++++.++........+|.+|.+.|+
T Consensus 30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~ 109 (423)
T KOG4219|consen 30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCR 109 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceee
Confidence 34567788999999999999999999999999999999999999999999999999999999888888889999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCC
Q psy9472 378 ISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 457 (647)
Q Consensus 378 ~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 457 (647)
+..++..+...+|++++++||+|||.||.+|++ .+.+++..+.+++++|++++++++|..+..........+
T Consensus 110 f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~-------~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d- 181 (423)
T KOG4219|consen 110 FVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQ-------PRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYD- 181 (423)
T ss_pred eccccchhhhhHhHHHHHHHHHHHHHHHhhhcc-------cCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccC-
Confidence 999999999999999999999999999999999 458999999999999999999999998887776655432
Q ss_pred CCceeeeeecCCCCC-----CCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhh
Q psy9472 458 NNTLFESCYPFPPID-----GYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKV 532 (647)
Q Consensus 458 ~~~~~~~C~~~~~~~-----~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~ 532 (647)
+.....|...++.. ......+.|...+.++.+++|++++...|..|.+++|..+....++. ++..+.+.++|+
T Consensus 182 -~~~~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d-~~~~~~kak~K~ 259 (423)
T KOG4219|consen 182 -GESRVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD-RKHEQLKAKKKV 259 (423)
T ss_pred -CcceEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-hhhHHHHHHHHH
Confidence 23334555433333 11111233777888899999999999999999999998764333322 345566888999
Q ss_pred hHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccCCC
Q psy9472 533 AKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDSVS 608 (647)
Q Consensus 533 ~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~~~ 608 (647)
.||++++++.|.+||+||++..++....++..+.......++....+.+.|+| ||+||.|-++-+|...++.++++
T Consensus 260 vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 260 VKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC 336 (423)
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence 99999999999999999999999988766655544444444444444449999 99998887777666666665555
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=3.3e-37 Score=306.19 Aligned_cols=271 Identities=15% Similarity=0.183 Sum_probs=195.8
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhhHHhhhhh--hhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccccc
Q psy9472 299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIF--INHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESIC 376 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i--~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C 376 (647)
.+....+..++|.+++++|++||+++++++ .+++++|+++|+|++|||+||++.++. .|+.... ..++|.+|+..|
T Consensus 28 ~~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~-~~~~w~fG~~lC 105 (338)
T PHA03234 28 LKKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLN-REALFNFNQAFC 105 (338)
T ss_pred HHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhCCccCchhHH
Confidence 345677889999999999999999999955 455666899999999999999999664 5554432 345799999999
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCC
Q psy9472 377 KISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 456 (647)
Q Consensus 377 ~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~ 456 (647)
++..++......+|++++++||+|||++|++|.+ ++. ++++....++++|+.+++.++|.++........
T Consensus 106 k~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~-----~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~--- 175 (338)
T PHA03234 106 QCVLFIYHASCSYSICMLAIIATIRYKTLHRRKK-----NDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKK--- 175 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHeeeechhh-----hhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecC---
Confidence 9999999999999999999999999999999998 332 233444556667999999999987654322211
Q ss_pred CCCceeeeeecCCCCCCCCCcchhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhh
Q psy9472 457 NNNTLFESCYPFPPIDGYPNYPRTVI---IMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVA 533 (647)
Q Consensus 457 ~~~~~~~~C~~~~~~~~~~~~~~~~~---~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~ 533 (647)
.....|....+.+ ..+ ..+. ...+.+.+++|+++|+++|.+|.++++++. .++++|++
T Consensus 176 ---~~~~~C~~~~~~~--~~~-~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~-------------~~~~~k~~ 236 (338)
T PHA03234 176 ---GNYGKCNIHISSK--KAY-DLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT-------------EKKHKKTL 236 (338)
T ss_pred ---CCCCcCcccCCcc--hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhhhhhhh
Confidence 1113576543321 111 1111 122334578999999999999999997631 14467899
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHhCC---CCCCCc----hhHHHHHHHHhhhhhccC-chhHHhhcCCccccccc
Q psy9472 534 KTVLTFVVVFAMCFFPQHFFFLWFYINP---TAPDDY----NDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTR 602 (647)
Q Consensus 534 ~~~~~i~~~f~~~w~P~~i~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~ 602 (647)
|++++++++|++||+||++..+++.+.. ...... .........+++ +||| ||+||.|.++.+|...+
T Consensus 237 k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~--~nsclNPiIY~f~~~~FR~~~~ 311 (338)
T PHA03234 237 FFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPE--IHCFSNPLVYAFTGGDFRLRFT 311 (338)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHhhHHHHHHHH
Confidence 9999999999999999999887654421 111111 112334445555 9999 99998876666554443
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=7.4e-36 Score=302.93 Aligned_cols=278 Identities=18% Similarity=0.236 Sum_probs=195.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhc-CCC-CCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccc
Q psy9472 300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINH-KSM-RNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICK 377 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~-~~l-~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~ 377 (647)
+....+..+++.+++++|++||+++++++.++ +.. ++..++|+.|||++|++. ++.+|+.+... ...|..|+..|+
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck 106 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK 106 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence 44567889999999999999999999986543 322 356789999999999997 56788765321 122334578999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCC
Q psy9472 378 ISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 457 (647)
Q Consensus 378 ~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 457 (647)
+..++...+..+|++++++||+|||++|++|.+ + ...+++++..+++++|++++++++|..++...........
T Consensus 107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~-----~-~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~ 180 (409)
T PHA03235 107 FASLLYYASCTVGFATVALIAADRYRVIHQRTR-----A-RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDP 180 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHeechhh-----c-cCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCc
Confidence 999999999999999999999999999999986 3 2346888899999999999999999765432211111111
Q ss_pred CCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHH
Q psy9472 458 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVL 537 (647)
Q Consensus 458 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 537 (647)
.......|......+........|.+..+++.|++|+++|+++|.+|+++++++.+ ++++|..++++
T Consensus 181 ~~~~~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-------------~~~~k~~~~v~ 247 (409)
T PHA03235 181 EAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-------------KKRSRTLTFVC 247 (409)
T ss_pred CCCCcceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hcchhhhhhHH
Confidence 11123468654332211111223455566778999999999999999999987532 22457788999
Q ss_pred HHHHHHhhccccHHHHHHHHHhCCC---CCCCc----hhHHHHHHHHhhhhhccC-chhHHhhcCCccccc
Q psy9472 538 TFVVVFAMCFFPQHFFFLWFYINPT---APDDY----NDFWHILRIMSSKIINSR-NANARRFHRPSTYSS 600 (647)
Q Consensus 538 ~i~~~f~~~w~P~~i~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~ 600 (647)
+++++|++||+||+++.++..+... ..... .....+...+++ +||| ||+||.+.++.+|..
T Consensus 248 iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~--~ns~lNPiIY~~~~~~FRk~ 316 (409)
T PHA03235 248 ILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPN--LHCLLNPILYAFLGNDFLKR 316 (409)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHH--HHHhHhHHHHHHhhHHHHHH
Confidence 9999999999999999887654321 11111 112233344444 9999 999976654443333
No 4
>KOG4220|consensus
Probab=100.00 E-value=1.3e-36 Score=284.62 Aligned_cols=294 Identities=19% Similarity=0.304 Sum_probs=239.0
Q ss_pred hhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccccccc
Q psy9472 299 ERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKI 378 (647)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~ 378 (647)
+..+..++.++...++++.++||++|++.+.-++.|++..|+|+.+||+||++.|.+.+|++......+.|+.|..+|.+
T Consensus 26 ~~~q~v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~Cdl 105 (503)
T KOG4220|consen 26 ETWQVVFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDL 105 (503)
T ss_pred cceEEEeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHH
Confidence 34555677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCC
Q psy9472 379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNN 458 (647)
Q Consensus 379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (647)
...+-++.+.+|++++.+|++|||+.|.+|+. |+.++|.+|+..+|+++|++|+++-.|.+.+|.+......
T Consensus 106 WLalDYvaSNASVmNLLiISFDRYFsVTrPLt-----YrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrT--- 177 (503)
T KOG4220|consen 106 WLALDYVASNASVMNLLIISFDRYFSVTRPLT-----YRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRT--- 177 (503)
T ss_pred HHHHHHHhhhhhhhhhheeeeecceeeccccc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeee---
Confidence 99999999999999999999999999999999 8899999999999999999999999999888776553322
Q ss_pred CceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-------------------
Q psy9472 459 NTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL------------------- 519 (647)
Q Consensus 459 ~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~------------------- 519 (647)
-....|....-..+ .+.....+..|-+|..+|+++|.+|++..+++.++....+
T Consensus 178 -v~~~eC~iQFlsnp------~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~ 250 (503)
T KOG4220|consen 178 -VPDGECYIQFLSNP------AITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGD 250 (503)
T ss_pred -cCCCceEEEeecCc------eeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCccccccc
Confidence 12235654333322 2233445677889999999999999999987765100000
Q ss_pred --------------------------------------------------------------------------------
Q psy9472 520 -------------------------------------------------------------------------------- 519 (647)
Q Consensus 520 -------------------------------------------------------------------------------- 519 (647)
T Consensus 251 ~~~s~r~~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~ 330 (503)
T KOG4220|consen 251 SKSSGRSSPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQR 330 (503)
T ss_pred ccCCCCCCCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcC
Confidence
Q ss_pred ------------------------------------------------cc-------------------h-----hhhhH
Q psy9472 520 ------------------------------------------------QG-------------------Q-----TRQIR 527 (647)
Q Consensus 520 ------------------------------------------------~~-------------------~-----~~~~~ 527 (647)
.. + +....
T Consensus 331 ~~D~~~~~~~i~i~~~~~~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~ 410 (503)
T KOG4220|consen 331 KVDEEGLNTLIQIPTDQMLPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLV 410 (503)
T ss_pred CCCccccccccccccccCCCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhH
Confidence 00 0 00114
Q ss_pred hhhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccccC
Q psy9472 528 ARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDS 606 (647)
Q Consensus 528 ~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~ 606 (647)
+|+|++|++..|++.|++||+||.++.++..|+..... ...|.+..++.+ +||- ||++|.+=++-||+..++...
T Consensus 411 rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~CiP--~tlW~~gYwLCY--INSTiNP~CYALCNatFrkTfk~lL~ 486 (503)
T KOG4220|consen 411 RERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCIP--ETLWTFGYWLCY--INSTINPLCYALCNATFRKTFKRLLL 486 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccccc--hhHhhhhhheee--ecccccHHHHHHHhHHHHHHHHHhhe
Confidence 78999999999999999999999999999999865543 335566666777 9999 999998877777777777665
Q ss_pred CCCCC
Q psy9472 607 VSTTH 611 (647)
Q Consensus 607 ~~~~~ 611 (647)
|....
T Consensus 487 Cr~~~ 491 (503)
T KOG4220|consen 487 CRWKK 491 (503)
T ss_pred eeecc
Confidence 55443
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=292.55 Aligned_cols=272 Identities=18% Similarity=0.365 Sum_probs=201.6
Q ss_pred hHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhh
Q psy9472 303 TYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISEST 382 (647)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 382 (647)
..+..+++.+++++|++||+++++++.++++ +++.|+|++|||+||++. ++.+|+.+... .++|.+|+..|++..++
T Consensus 28 ~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~~ 104 (323)
T PHA02834 28 NYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLGV 104 (323)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHHH
Confidence 4577899999999999999999999887665 457899999999999987 56788765433 35799999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCcee
Q psy9472 383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLF 462 (647)
Q Consensus 383 ~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (647)
...+..+|++++++||+|||++|++|++ ++. .+.+++...++++|+++++.++|+..+...... ...
T Consensus 105 ~~~~~~~Si~tL~~IsidRY~aI~~P~~-----~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~-------~~~ 171 (323)
T PHA02834 105 YFVGFFSNMFFVTLISIDRYILVVNATK-----IKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT-------DNL 171 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeCchh-----ccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccC-------CCc
Confidence 9999999999999999999999999998 433 345677778889999999999988765332111 112
Q ss_pred eeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHH
Q psy9472 463 ESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVV 542 (647)
Q Consensus 463 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~ 542 (647)
..|........ ..+...+.....++.+++|+++|+++|.+|+++++++++ ++++|..|++++++++
T Consensus 172 ~~C~~~~~~~~-~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------~~~~k~~k~~~~vv~~ 237 (323)
T PHA02834 172 KQCIFNDYHEN-FSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------KNKTRSIKIILTVVTF 237 (323)
T ss_pred eEEeccCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cccceEEeehhHHHHH
Confidence 35753221111 111122333345778999999999999999999987532 2345888999999999
Q ss_pred HhhccccHHHHHHHHHhCCCCCC----C-chh---HHHHHHHHhhhhhccC-chhHHhhcCCccccccccccC
Q psy9472 543 FAMCFFPQHFFFLWFYINPTAPD----D-YND---FWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKWDS 606 (647)
Q Consensus 543 f~~~w~P~~i~~~~~~~~~~~~~----~-~~~---~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~~~ 606 (647)
|++||+|+++..++..+...... . ... .......+++ .||| ||+||.+.++.+|...++.++
T Consensus 238 F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--~ns~iNPiIY~~~~~~fR~~~~~~~~ 308 (323)
T PHA02834 238 TVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISF--VHCCVNPIIYAFVGKNFKKVFKNMFC 308 (323)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHH--hhccccHHHHHHhcHHHHHHHHHHHH
Confidence 99999999999887665322111 1 111 1223344555 9999 999999888777777776553
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.7e-34 Score=293.19 Aligned_cols=283 Identities=19% Similarity=0.330 Sum_probs=209.6
Q ss_pred hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472 300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS 379 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 379 (647)
.....+...++.+++++|++||+++++++.+ |++|++++++++|||++|++. ++.+|+.+... .++|.+|+..|++.
T Consensus 95 ~~~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~-~~~W~fg~~~Ck~~ 171 (417)
T PHA02638 95 PSISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIF-VIDFPFIIYNE-FDQWIFGDFMCKVI 171 (417)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHH-hccccccccchhhH
Confidence 3355678889999999999999999987755 778899999999999999998 45678766443 46899999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeec---CC
Q psy9472 380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD---DT 456 (647)
Q Consensus 380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~---~~ 456 (647)
.++...+..+++++++++++|||++|++|.+ ++...++++....++++|++++++++|++++........ +.
T Consensus 172 ~~l~~~~~~~Si~~L~~isiDRYlaIv~p~~-----~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~ 246 (417)
T PHA02638 172 SASYYIGFFSNMFLITLMSIDRYFAILYPIS-----FQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDS 246 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----ccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccC
Confidence 9999999999999999999999999999999 666677788888899999999999999987654332111 11
Q ss_pred CCCceeeeeecCCCCCCC--CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhH
Q psy9472 457 NNNTLFESCYPFPPIDGY--PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAK 534 (647)
Q Consensus 457 ~~~~~~~~C~~~~~~~~~--~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~ 534 (647)
+.......|....+.... ..+...+.....++.+++|+++|++||.+|++++++.++ ++++|.+|
T Consensus 247 ~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~-------------~~k~k~~r 313 (417)
T PHA02638 247 NETISNYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK-------------SKKTKSII 313 (417)
T ss_pred CCCccCCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cccchhhh
Confidence 111112467543322210 111123334445677899999999999999999976421 23467789
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHhCCC---------CCCCc---hhHHHHHHHHhhhhhccC-chhHHhhcCCcccccc
Q psy9472 535 TVLTFVVVFAMCFFPQHFFFLWFYINPT---------APDDY---NDFWHILRIMSSKIINSR-NANARRFHRPSTYSST 601 (647)
Q Consensus 535 ~~~~i~~~f~~~w~P~~i~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~ 601 (647)
+++.++++|++||+|+.++.++..+... ..... .....+...+++ +|+| ||+||.|..+-+|+..
T Consensus 314 li~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~--~~sclNPiIY~f~~~~FR~~l 391 (417)
T PHA02638 314 IVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISL--THCCINPLIYTLIGENFRMHL 391 (417)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHH--HHHhhhHHHHHHhCHHHHHHH
Confidence 9999999999999999999888765421 11111 112233344444 9999 9999888777776666
Q ss_pred cccc
Q psy9472 602 RKWD 605 (647)
Q Consensus 602 ~~~~ 605 (647)
++.+
T Consensus 392 ~~~~ 395 (417)
T PHA02638 392 LMIF 395 (417)
T ss_pred HHHH
Confidence 5543
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=276.84 Aligned_cols=282 Identities=22% Similarity=0.338 Sum_probs=213.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472 300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS 379 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 379 (647)
+....+..+++.+++++|++||+++++++.++ ++|++.++++.|||++|++.++ ..|..........|..++..|++.
T Consensus 37 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~ 114 (335)
T PHA03087 37 DTNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIV 114 (335)
T ss_pred cchhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHH
Confidence 34556788899999999999999999999888 8899999999999999998865 456555444456788899999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCC
Q psy9472 380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNN 459 (647)
Q Consensus 380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (647)
.++......+|++++++||+|||++|++|++ |+...+.+++..+++++|+.+++.++|++.........
T Consensus 115 ~~~~~~~~~~S~~~l~~iaidRy~aI~~p~~-----~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~------ 183 (335)
T PHA03087 115 SGLYYIGFYNSMNFITVMSVDRYIAIVHPVK-----SNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDH------ 183 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-----cccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccC------
Confidence 9999999999999999999999999999999 77888999999999999999999999887654432211
Q ss_pred ceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHH
Q psy9472 460 TLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTF 539 (647)
Q Consensus 460 ~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i 539 (647)
....|........ ..+.........++.+++|+++++++|.++.++++++.+ .++++|..|++..+
T Consensus 184 -~~~~C~~~~~~~~-~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~------------~~~~~k~~k~l~~i 249 (335)
T PHA03087 184 -ETLICCMFYNNKT-MNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK------------SKKNKKAIKLVLII 249 (335)
T ss_pred -CCceEEecCCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------chhcchHHHhHHHH
Confidence 1235654443221 222223333445677899999999999999999986532 24567889999999
Q ss_pred HHHHhhccccHHHHHHHHHhCC---CCCCCchhHHHHHHHHhhhh--hccC-chhHHhhcCCccccccccccCCC
Q psy9472 540 VVVFAMCFFPQHFFFLWFYINP---TAPDDYNDFWHILRIMSSKI--INSR-NANARRFHRPSTYSSTRKWDSVS 608 (647)
Q Consensus 540 ~~~f~~~w~P~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~ns~-NPiI~~fr~~~~~~~~~~~~~~~ 608 (647)
+++|++||.|+.+..++..... ...............+...+ +|++ ||+||.++++.+|...|+..+..
T Consensus 250 v~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~ 324 (335)
T PHA03087 250 VILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLM 324 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHH
Confidence 9999999999999877654421 11112222222222222222 9999 99999999988887777665443
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.97 E-value=1.3e-30 Score=253.80 Aligned_cols=255 Identities=29% Similarity=0.502 Sum_probs=211.8
Q ss_pred hhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHHHHHHHHHH
Q psy9472 320 GNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSA 399 (647)
Q Consensus 320 ~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~ 399 (647)
||+++++++.++|++|++.+++++|||++|++.++...|........++|..++..|++..++..++..+|.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999998888877666655789999999999999999999999999999999
Q ss_pred hhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcch
Q psy9472 400 DRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPR 479 (647)
Q Consensus 400 dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 479 (647)
|||++|++|++ |++..+++++...++++|++++++++|+.+.........+. ...|........ ..
T Consensus 81 dRy~~i~~p~~-----~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~C~~~~~~~~----~~ 146 (257)
T PF00001_consen 81 DRYLAICHPLR-----YRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGS-----QSFCFIDFSSSS----SQ 146 (257)
T ss_dssp HHHHHHHSHHT-----HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCC-----CEEEEESCSSSH----HH
T ss_pred ccccccccccc-----ccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc----cc
Confidence 99999999999 78888899999999999999999999998775544433221 357876544322 34
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-cchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHH
Q psy9472 480 TVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFY 558 (647)
Q Consensus 480 ~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~ 558 (647)
.+.....++.+++|+++++++|.+++++++++.++..... +..+++.++++|.++++..++++|++||+|+.+..++..
T Consensus 147 ~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~ 226 (257)
T PF00001_consen 147 IYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSV 226 (257)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHH
Confidence 5667778889999999999999999999999887655433 344556688899999999999999999999999999988
Q ss_pred hCCCCCCCchhHHHHHHHHhhhhhccC-chhHH
Q psy9472 559 INPTAPDDYNDFWHILRIMSSKIINSR-NANAR 590 (647)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~ 590 (647)
..+...............+.+ +|++ ||+||
T Consensus 227 ~~~~~~~~~~~~~~~~~~l~~--~~s~~nP~iY 257 (257)
T PF00001_consen 227 FSPSSSLISSILFYISYFLAF--LNSCLNPIIY 257 (257)
T ss_dssp HSSTSTCSHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HcCccchhhHHHHHHHHHHHH--HHHhhCcEEC
Confidence 876663333444455555555 9999 99997
No 9
>KOG4219|consensus
Probab=99.96 E-value=1.3e-28 Score=232.39 Aligned_cols=204 Identities=24% Similarity=0.446 Sum_probs=163.2
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCC----
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPID---- 76 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~---- 76 (647)
||+|||+||.||++. +.++|.+..+++++|+.++++++|..+....+......+ .....|...++..
T Consensus 129 iA~DRy~AIi~Pl~~-------r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~--~~~~~~~~~~pe~~~~~ 199 (423)
T KOG4219|consen 129 IAIDRYMAIIHPLQP-------RPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDG--ESRVVCVTAWPEHVCPT 199 (423)
T ss_pred HHHHHHHHHhhhccc-------CCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCC--cceEEEEEecccccCCc
Confidence 589999999999994 489999999999999999999999988777766554322 1223466555443
Q ss_pred -CCCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHH
Q psy9472 77 -GYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH 155 (647)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~ 155 (647)
......+.|...+.++.+++|++++..+|..|.+.+|.++.. ..+.++..++.+.++|+.||++++++.|.+||+||+
T Consensus 200 ~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~-gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh 278 (423)
T KOG4219|consen 200 ENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIP-GDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYH 278 (423)
T ss_pred chhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCc-cchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChh
Confidence 111222347788889999999999999999999999976632 223334556778899999999999999999999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccc
Q psy9472 156 FFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM 216 (647)
Q Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 216 (647)
+..++....+.. ..+...+.+.....+|+++|+|.||+||+++|++||..+++.++|+.
T Consensus 279 ~y~il~~~~~~i--~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp 337 (423)
T KOG4219|consen 279 IYFILNATNPEI--NRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP 337 (423)
T ss_pred HHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence 999988754432 23445577888899999999999999999999999999999999884
No 10
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.94 E-value=5.6e-26 Score=230.83 Aligned_cols=196 Identities=18% Similarity=0.286 Sum_probs=138.6
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
||+|||++|++|.+.. ..+++++..+++++|+.++++++|++++..................|...+..+....
T Consensus 126 ISiDRY~aI~~p~~~~------~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 199 (409)
T PHA03235 126 IAADRYRVIHQRTRAR------SSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKT 199 (409)
T ss_pred HHHHHHHHeechhhcc------CcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcceeeEeCCchhHHH
Confidence 6899999999998632 3568889999999999999999997654322111110000011123765443322111
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472 81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW 160 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~ 160 (647)
....|.+..+++.|++|+++|++||.+|++.++++.+ ++++|..+++++++++|++||+||++..++
T Consensus 200 ~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-------------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~ 266 (409)
T PHA03235 200 VLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-------------KKRSRTLTFVCILLLSFLCLQTPFVAIMIF 266 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hcchhhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 1234556667778999999999999999999986421 234677889999999999999999999887
Q ss_pred HHhcCC---CCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472 161 FYINPT---APDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK 215 (647)
Q Consensus 161 ~~~~~~---~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 215 (647)
..+... ...........+..++.+++++||++||+||++++++||+++++.++++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 267 DSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred HHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 654321 1111122234566788999999999999999999999999999988654
No 11
>KOG2087|consensus
Probab=99.93 E-value=6.1e-28 Score=225.65 Aligned_cols=288 Identities=20% Similarity=0.233 Sum_probs=227.5
Q ss_pred eccCCCCCCCccchhhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeee
Q psy9472 286 INTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYT 365 (647)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~ 365 (647)
...+.++...|+++.....++.+..+++.+++++||.+|+......+...++..+++.|||++|+++|+....+...+..
T Consensus 7 ~C~P~~da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~ 86 (363)
T KOG2087|consen 7 TCKPSPDAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAK 86 (363)
T ss_pred eecCCCCCCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHH
Confidence 44556677788888899999999999999999999999999988877777788999999999999999876665555444
Q ss_pred ec-------cccccccccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHH
Q psy9472 366 FE-------SWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAIL 438 (647)
Q Consensus 366 ~~-------~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~ 438 (647)
.. .|..+...|++.+++..+.+..|+++++.+++||+++|.+|++ -++....|....+++..|+.+++
T Consensus 87 ~~gey~~~ai~W~tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~-----~~~~~~lr~~~~ill~~wl~~~l 161 (363)
T KOG2087|consen 87 TRGEYYKHAIDWQTGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFR-----LDRKAKLRPLVLILLLGWLFAFL 161 (363)
T ss_pred HHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheecccc-----CCCcccccHHHHHHHHHHHHHHH
Confidence 32 1334567999999999999999999999999999999999999 66777777799999999999999
Q ss_pred hhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy9472 439 CAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGE 518 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~ 518 (647)
.++.|+++.. .......|.+....+..+.. +.+..++....+.+++|.++|.+++..+++......
T Consensus 162 ~A~~Pl~g~s---------~Y~~~~vClPL~~~~~~s~g---~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~-- 227 (363)
T KOG2087|consen 162 MALLPLFGIS---------SYGASSVCLPLHIEEPLSTG---YYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSAT-- 227 (363)
T ss_pred HHhccccCCC---------CCcccceeeecccCCccchh---HHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccc--
Confidence 9988877632 22334789988777653332 566777888999999999999999999986432211
Q ss_pred ccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCcc
Q psy9472 519 LQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPST 597 (647)
Q Consensus 519 ~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~ 597 (647)
....+.+|-++.++++-++||.|..++.+...++.+........+..+..+. +|+| ||++|.|-.+.+
T Consensus 228 --------~~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flP---lns~~NP~LYa~fT~~f 296 (363)
T KOG2087|consen 228 --------LISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLP---LNSCLNPFLYAFFTPVF 296 (363)
T ss_pred --------cchhhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEE---cccccCchhHHHcCHHH
Confidence 1114778888999999999999999999998888776655443332222222 9999 999998877776
Q ss_pred cccccc
Q psy9472 598 YSSTRK 603 (647)
Q Consensus 598 ~~~~~~ 603 (647)
|...+.
T Consensus 297 k~d~~~ 302 (363)
T KOG2087|consen 297 KEDLFL 302 (363)
T ss_pred HHHHHH
Confidence 665554
No 12
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.92 E-value=4.5e-25 Score=219.43 Aligned_cols=183 Identities=16% Similarity=0.237 Sum_probs=127.6
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
||+|||+||++|.+. + .+.++....++.+|+.+++.++|.+.........+. ...|...++.+. .
T Consensus 126 ISiDRY~aIv~p~~~-----~--~~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~~------~~~C~~~~~~~~--~ 190 (338)
T PHA03234 126 IATIRYKTLHRRKKN-----D--KKNNHIGRNIGILFLASAMCAIPAALFVKTEGKKGN------YGKCNIHISSKK--A 190 (338)
T ss_pred HHHHhHeeeechhhh-----h--hhhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCCC------CCcCcccCCcch--h
Confidence 689999999999983 2 223444455666799999999998765433221111 013876554321 1
Q ss_pred Ccchhh---hhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHH
Q psy9472 81 YPRTVI---IMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFF 157 (647)
Q Consensus 81 ~~~~~~---~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~ 157 (647)
+ ..+. .....+.|++|+++|++||.+|.+++++. +.++++|++|++++++++|++||+||++.
T Consensus 191 ~-~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~-------------~~~~~~k~~k~i~~vv~vF~iCWlPy~iv 256 (338)
T PHA03234 191 Y-DLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL-------------TEKKHKKTLFFIRILILSFLCIQIPNIAI 256 (338)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hhhhhhhhhhHHHHHHHHHHHHHhHHHHH
Confidence 1 1111 12233457899999999999999998642 12456899999999999999999999998
Q ss_pred HHHHHhcC---CCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhh
Q psy9472 158 FLWFYINP---TAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYL 212 (647)
Q Consensus 158 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~ 212 (647)
.++..... ..++......+....++..++++|||+||++|++.+++||+++++.+
T Consensus 257 ~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~ 314 (338)
T PHA03234 257 LICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACF 314 (338)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHH
Confidence 87654421 11122222334566788999999999999999999999999988766
No 13
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.91 E-value=1.7e-24 Score=215.87 Aligned_cols=189 Identities=19% Similarity=0.343 Sum_probs=133.7
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
||+|||++|++|++ +.. .+.+++..+++++|+.+++.++|++++...... + . ...|.......+ ..
T Consensus 119 IsidRY~aI~~P~~-----~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~~--~-~----~~~C~~~~~~~~-~~ 184 (323)
T PHA02834 119 ISIDRYILVVNATK-----IKN-KSISLSVLLSVAAWVCSVILSMPAMVLYYVDNT--D-N----LKQCIFNDYHEN-FS 184 (323)
T ss_pred HHHHHhhheeCchh-----ccC-CccchHHHHHHHHHHHHHHHHhhHHHHHHhccC--C-C----ceEEeccCCccc-hH
Confidence 58999999999998 332 355677788899999999999998765432111 1 1 123763221111 11
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472 81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW 160 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~ 160 (647)
+...+.....++.|++|+++|+++|.+|.++++++.+ ++++|.+|++++++++|++||+||++..++
T Consensus 185 ~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l 251 (323)
T PHA02834 185 WSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------KNKTRSIKIILTVVTFTVVFWVPFNIVLFI 251 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cccceEEeehhHHHHHHHHHHhhHHHHHHH
Confidence 1122333345778999999999999999999976432 135688999999999999999999999887
Q ss_pred HHhcCCCC--CC--hhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccc
Q psy9472 161 FYINPTAP--DD--YNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM 216 (647)
Q Consensus 161 ~~~~~~~~--~~--~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 216 (647)
..+..... .+ ..........++.+++++||++||++|++++++||+++++.+++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~ 311 (323)
T PHA02834 252 NSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTN 311 (323)
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhh
Confidence 66543211 11 1111122345788999999999999999999999999999886543
No 14
>KOG4220|consensus
Probab=99.91 E-value=1.8e-24 Score=203.58 Aligned_cols=199 Identities=23% Similarity=0.395 Sum_probs=154.8
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
||+|||..|.+|+. |+.+.|.+++..+|+++|++|+++-.|..++|.+......... ++|...+-..
T Consensus 124 ISFDRYFsVTrPLt-----YrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkrTv~~----~eC~iQFlsn---- 190 (503)
T KOG4220|consen 124 ISFDRYFSVTRPLT-----YRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKRTVPD----GECYIQFLSN---- 190 (503)
T ss_pred eeeecceeeccccc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeeeecCC----CceEEEeecC----
Confidence 68999999999999 8889999999999999999999999998876644322221111 2387655432
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCC----------------C----------------------
Q psy9472 81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG----------------E---------------------- 122 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~----------------~---------------------- 122 (647)
...++-..+.-|-+|..+|.++|.+|++..+++.+.... +
T Consensus 191 --p~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~~p~~~~~~~~~ 268 (503)
T KOG4220|consen 191 --PAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRSSPSEEGKREPL 268 (503)
T ss_pred --ceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCcccccccccCCCCCCCccccccccC
Confidence 233445566778899999999999999998765321100 0
Q ss_pred --------------------------cc----------------------------------------------------
Q psy9472 123 --------------------------LQ---------------------------------------------------- 124 (647)
Q Consensus 123 --------------------------~~---------------------------------------------------- 124 (647)
.+
T Consensus 269 ~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~se~~~~~~v~~~~~~~~~~~D~~~~~~~i~i~~~~~ 348 (503)
T KOG4220|consen 269 TNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGSELSEIEAVVAKMPANQRKVDEEGLNTLIQIPTDQM 348 (503)
T ss_pred CCCccccccCcccCCccCCCCccccccccccccccccCCccccccccccccceeccCCCCcCCCCccccccccccccccC
Confidence 00
Q ss_pred ------------------------------h--------------------h-----HHHHHHHhHhHHHHHHHHHHHHH
Q psy9472 125 ------------------------------G--------------------Q-----TRQIRARKKVAKTVLTFVVVFAM 149 (647)
Q Consensus 125 ------------------------------~--------------------~-----~~~~~~~~k~~~~~~~i~~~f~~ 149 (647)
. + .....+|+|++|++.+|++.|++
T Consensus 349 ~p~s~sc~p~~~~t~~~~~s~~ns~~gk~r~~~~~~~~~~~~kkf~~~~r~q~~k~k~~~~~rErKAAkTLsAILlAFIi 428 (503)
T KOG4220|consen 349 LPKSDSCVPIFSATDTDKTTDTNSGAGKRRAGPVARKTGLDYKKFAKRARSQSRKKKKMSLVRERKAAKTLSAILLAFIL 428 (503)
T ss_pred CCCCCcccccccccccccCCccCccccccccCccccccchhhhhhhhhhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00125889999999999999999
Q ss_pred hhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccccc
Q psy9472 150 CFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKI 220 (647)
Q Consensus 150 ~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~ 220 (647)
+|+||.++.++..+.+.... +.++.+..+|.|+||-+||+.|.+.|+.||+.+++++.|+.+++.
T Consensus 429 TWtPYNImVlv~tFC~~CiP------~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr~~~~~ 493 (503)
T KOG4220|consen 429 TWTPYNIMVLVNTFCKNCIP------ETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCRWKKRR 493 (503)
T ss_pred HcccceeeeehHhhcccccc------hhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheeeecccc
Confidence 99999999999988776443 457789999999999999999999999999999999998876654
No 15
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=214.48 Aligned_cols=196 Identities=16% Similarity=0.256 Sum_probs=140.0
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeecc---CCCCCccceeeecCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD---DTNNNTLFESCYPFPPIDG 77 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~---~~~~~~~~~~C~~~~~~~~ 77 (647)
|++|||+||+||.+ |+...+++.+..+++++|+.++++++|+++......... +.........|...++.+.
T Consensus 189 isiDRYlaIv~p~~-----~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 263 (417)
T PHA02638 189 MSIDRYFAILYPIS-----FQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQCTLIEDNEK 263 (417)
T ss_pred HHHHHHHHHhcccc-----ccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCeeeeeccccc
Confidence 58999999999998 555677788888999999999999999987544321110 0000001124754433221
Q ss_pred --CCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHH
Q psy9472 78 --YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH 155 (647)
Q Consensus 78 --~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~ 155 (647)
...+...+.+...++++++|+++|++||.+|++.+++.+ .++++|.+|++++++++|++||+||+
T Consensus 264 ~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~-------------~~~k~k~~rli~~ivi~f~lcW~Py~ 330 (417)
T PHA02638 264 NNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK-------------KSKKTKSIIIVSIIIICSLICWIPLN 330 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------ccccchhhhhHHHHHHHHHHHHhhHH
Confidence 111222334445677789999999999999999997532 12457889999999999999999999
Q ss_pred HHHHHHHhcCC---------CCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472 156 FFFLWFYINPT---------APDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK 215 (647)
Q Consensus 156 i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 215 (647)
+..++..+... .++... .......++..++++|||+||++|++.+++||+++++.+++.
T Consensus 331 i~~ll~~~~~~~~~~~~~~~~~c~~~-~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~ 398 (417)
T PHA02638 331 IVILFATMYSFKGFNSIISEHICGFI-KLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNI 398 (417)
T ss_pred HHHHHHHHHHhhccccccccccccHH-HHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHh
Confidence 99888765421 112222 234556678899999999999999999999999999988544
No 16
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.88 E-value=3.5e-22 Score=201.60 Aligned_cols=194 Identities=22% Similarity=0.312 Sum_probs=143.3
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
||+|||++|++|++ |....+.+++..+++++|+.+++.++|+............ ..|...+.... ..
T Consensus 132 iaidRy~aI~~p~~-----~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~~~-------~~C~~~~~~~~-~~ 198 (335)
T PHA03087 132 MSVDRYIAIVHPVK-----SNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDHET-------LICCMFYNNKT-MN 198 (335)
T ss_pred HHHHHHHHhhccCc-----cccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccCCC-------ceEEecCCCcc-hh
Confidence 58999999999999 6668899999999999999999999998765543322211 12655444221 11
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472 81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW 160 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~ 160 (647)
+...+.+...++.+++|+++++++|.++.++++++.+ .++++|+.|++.+++++|++||+|+++..++
T Consensus 199 ~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~------------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~ 266 (335)
T PHA03087 199 WKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK------------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFV 266 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------chhcchHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233345667899999999999999998875421 2356789999999999999999999998776
Q ss_pred HHhcC---CCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472 161 FYINP---TAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK 219 (647)
Q Consensus 161 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~ 219 (647)
..... ..........+.+..++.+++.+|+++||+||++++++||+++++.++....++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~~~ 328 (335)
T PHA03087 267 YSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTSS 328 (335)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhhcC
Confidence 54421 122222333455667888999999999999999999999999999987554443
No 17
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.82 E-value=8.2e-20 Score=177.61 Aligned_cols=179 Identities=29% Similarity=0.565 Sum_probs=145.0
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
||+|||++|++|++ |++..+++++..+++++|++++++++|+.+.........+. ...|..+.....
T Consensus 78 is~dRy~~i~~p~~-----~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~-----~~~C~~~~~~~~--- 144 (257)
T PF00001_consen 78 ISIDRYLAICHPLR-----YRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDGS-----QSFCFIDFSSSS--- 144 (257)
T ss_dssp HHHHHHHHHHSHHT-----HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTCC-----CEEEEESCSSSH---
T ss_pred cccccccccccccc-----ccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc---
Confidence 57999999999999 66688899999999999999999999998765544443322 123876655432
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc-chhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Q psy9472 81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL 159 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~ 159 (647)
...+.....++.+++|+++++++|.++.+.++++.++..+.. +...++.++|+|.++++++++++|++||+|+.+..+
T Consensus 145 -~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~ 223 (257)
T PF00001_consen 145 -SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSL 223 (257)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHH
Confidence 346777778888999999999999999999998877655433 345566778999999999999999999999999999
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHH
Q psy9472 160 WFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIAL 197 (647)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY 197 (647)
+.......+. .......++.++.++|+++||++|
T Consensus 224 ~~~~~~~~~~----~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 224 LSVFSPSSSL----ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHSSTSTC----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccch----hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 8888766521 336777899999999999999998
No 18
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.74 E-value=2.3e-18 Score=164.70 Aligned_cols=254 Identities=17% Similarity=0.226 Sum_probs=176.6
Q ss_pred HHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHHHHH
Q psy9472 315 VVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTL 394 (647)
Q Consensus 315 ~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l 394 (647)
++|++||..++.++.++|++|++.+++++.+|++|++.++..+|...... ++.......|-...+...++.......+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999776666654222 2334556789999999999999999999
Q ss_pred HHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCC
Q psy9472 395 TALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGY 474 (647)
Q Consensus 395 ~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 474 (647)
.+|++||++||+.|.+ |+...+.+..........+.+.......+. ..+ ++....|.+.....+
T Consensus 80 l~i~iDr~iaV~~P~~-----Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~-----~~~-----~~~~~~C~pp~a~~~- 143 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLR-----YRTISTRKYLIILLIFPVIYSIFFTVIGFL-----YRD-----DETIVICNPPLAFHG- 143 (257)
T ss_pred HHHHhhheeeEeehhh-----hhhcccccchhhHhHHHHHHHHHHHhheeE-----ecC-----CcccccCCCccccCc-
Confidence 9999999999999999 777788776555555555555554332211 111 123457876444322
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHH
Q psy9472 475 PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFF 554 (647)
Q Consensus 475 ~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~ 554 (647)
....+... ... +.-++.++.|...+...+++.++ ..++++|..|.+...++.|+++|.-..+..
T Consensus 144 ----~~~~~~~~-~~~-~inv~tvivY~i~~~~~~~k~~~----------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~ 207 (257)
T PF10320_consen 144 ----TASQIWSY-SNI-IINVITVIVYIITIIIFKRKSRS----------NSSRSKKVFKSLKVTVIIFIFSWFLSQIIN 207 (257)
T ss_pred ----cHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHccc----------cchhHHHHHHHhhhheeeeeHHHHHHHHHH
Confidence 12222211 122 22344566777777777765332 345678999999999999999999888877
Q ss_pred HHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHHhhcCCccccccccc
Q psy9472 555 LWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANARRFHRPSTYSSTRKW 604 (647)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~~fr~~~~~~~~~~~ 604 (647)
.+......+............+... .|.+ |.++|-+|+++.|+..|+.
T Consensus 208 ~v~~~~~~~~~~~~~i~~~~~i~v~--~~~s~~ffV~~~~S~EYR~af~~~ 256 (257)
T PF10320_consen 208 TVSLALGLDGETIAIIQMYAGIFVN--ISYSQNFFVYYWRSSEYRKAFREL 256 (257)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHH--HHHHHHheEEEEcCHHHHHHHHHh
Confidence 7766544443333333344444444 8888 9999888888877766653
No 19
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.70 E-value=7.9e-17 Score=161.14 Aligned_cols=280 Identities=18% Similarity=0.252 Sum_probs=188.4
Q ss_pred HHHHHHHhhHHhhhhhhhcCCCC-CCccchhhHHHHHHHHHHhhcccceeeeeeec---c--cc----ccccccccchhh
Q psy9472 313 IFVVGVLGNGTLVLIFINHKSMR-NVPNIYILSLALGDLLVILTCVPFTSTVYTFE---S--WP----YGESICKISEST 382 (647)
Q Consensus 313 ~~~~g~~~N~~vl~~i~~~~~l~-~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~---~--~~----~~~~~C~~~~~~ 382 (647)
+.++|+++|.+.+.++.|+. +| ++.|.+++.+|++|++..+...+......... + .+ .......+...+
T Consensus 6 ~~~~g~~~N~~h~~VLtrk~-mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLTRKS-MRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EeHHHHHHHHHHhhhcCChh-hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 46789999999999996554 56 58999999999999999777666554322211 0 00 111122344567
Q ss_pred hhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCcee
Q psy9472 383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLF 462 (647)
Q Consensus 383 ~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (647)
...+..+|.|..++||+.|++++.+|.... .+...+++.+...+.++++.+.++..+.++.....+..+. ....
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~---~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~---~~p~ 158 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSR---FQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDP---WVPP 158 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEecccc---ccCC
Confidence 777888999999999999999999998832 3456678888889999999999999888765554432211 1112
Q ss_pred eeeecCCCCCCCCCcc---------------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhH
Q psy9472 463 ESCYPFPPIDGYPNYP---------------RTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIR 527 (647)
Q Consensus 463 ~~C~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~ 527 (647)
..|...+.....+.+. ..+.+...++.-++|.++..++.+.+.+++|+.++++++..+.+ .+
T Consensus 159 ~~C~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~---~~ 235 (318)
T PF10324_consen 159 PNCSGFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK---SK 235 (318)
T ss_pred CceeeccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc---cc
Confidence 3575332211111111 12333334445789999999999999999998877655443211 45
Q ss_pred hhhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhh-hccC-chhH-----HhhcCCccccc
Q psy9472 528 ARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKI-INSR-NANA-----RRFHRPSTYSS 600 (647)
Q Consensus 528 ~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ns~-NPiI-----~~fr~~~~~~~ 600 (647)
++.+.++++..+++.|+++-+|..+..++..+..+.................+. +|+. |++| .+||+..++.+
T Consensus 236 ~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f 315 (318)
T PF10324_consen 236 KSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLF 315 (318)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHh
Confidence 677899999999999999999999999998874443322222222222222222 9999 9999 56677665555
Q ss_pred cc
Q psy9472 601 TR 602 (647)
Q Consensus 601 ~~ 602 (647)
++
T Consensus 316 ~~ 317 (318)
T PF10324_consen 316 GC 317 (318)
T ss_pred cc
Confidence 44
No 20
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.54 E-value=7.4e-14 Score=135.98 Aligned_cols=228 Identities=14% Similarity=0.122 Sum_probs=158.6
Q ss_pred HHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccc-ccccchhhhhhhHHHHH
Q psy9472 313 IFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGES-ICKISESTKDISVGVSV 391 (647)
Q Consensus 313 ~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~s~ 391 (647)
++++|++.|.++++.+.+.+++|++.+.+-.+.|++|.+.++..+.........+.....+. .-.+.+.....+...+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999997754433222222221111221 22334667777888899
Q ss_pred HHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchhee-eeeeecCCCCCceeeeeecCCC
Q psy9472 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSY-VRAFKDDTNNNTLFESCYPFPP 470 (647)
Q Consensus 392 ~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~ 470 (647)
++.++||++|+.||..|.+ |++..+.+.+..+++++|++++....+...... ...++.+ ..-+....
T Consensus 83 ~~~~liaiNRf~ai~fP~~-----y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~-------~~~~~~~~ 150 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFK-----YKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPE-------TWSWSYPT 150 (274)
T ss_pred HHHHHHHHHHHheeeeHHH-----HHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccc-------eeeeecCC
Confidence 9999999999999999999 888999999999999999999977655543221 1111111 11111100
Q ss_pred CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccH
Q psy9472 471 IDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQ 550 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~ 550 (647)
.+. -..+..........+-.+++.+++..++.++++.+++....++..+++.++|.+..+.....-+.|++.+.-+
T Consensus 151 ~~~----C~~~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~ 226 (274)
T PF10328_consen 151 DPP----CGNYSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFY 226 (274)
T ss_pred CCc----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0111222233444455667778889999888887777645555567777889999999999999999998877
Q ss_pred HHHHHH
Q psy9472 551 HFFFLW 556 (647)
Q Consensus 551 ~i~~~~ 556 (647)
.+..-+
T Consensus 227 ~~~~~~ 232 (274)
T PF10328_consen 227 FFIPPL 232 (274)
T ss_pred HHHHHh
Confidence 765443
No 21
>KOG2087|consensus
Probab=99.52 E-value=1.5e-15 Score=143.08 Aligned_cols=183 Identities=21% Similarity=0.263 Sum_probs=132.7
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
+++||+++|++|++ -.+....|....+.+.+|+.+++.++.|++....+ .....|.+....+...
T Consensus 125 itlEr~l~i~~p~~-----~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y---------~~~~vClPL~~~~~~s- 189 (363)
T KOG2087|consen 125 ITLERWLSITYPFR-----LDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSY---------GASSVCLPLHIEEPLS- 189 (363)
T ss_pred HHHHHHhheecccc-----CCCcccccHHHHHHHHHHHHHHHHHhccccCCCCC---------cccceeeecccCCccc-
Confidence 47899999999999 34456677799999999999999988776552211 1112388765554433
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472 81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW 160 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~ 160 (647)
..|+...++..-.+-+++|+++|.+++..+++...... .+..+.+|-+..++++-.+||.|.+++.+.
T Consensus 190 --~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~----------~~~~~~akr~a~LvfTd~icw~Pi~f~~~~ 257 (363)
T KOG2087|consen 190 --TGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSAT----------LISTSVAKRMAFLVFTDCICWCPIAFFKFS 257 (363)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccc----------cchhhhhhCeeEEEEccccccCchheeeeH
Confidence 21455556667789999999999999999975432211 011467777888899999999999999888
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472 161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK 215 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 215 (647)
..++........ ...+..++.-+|||+||++|.++++.||+.++..+...
T Consensus 258 al~~~~li~~~~-----sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~ 307 (363)
T KOG2087|consen 258 ALIGVELISVSY-----SKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKV 307 (363)
T ss_pred HhcCCcccChhh-----ceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence 877665443211 11234455669999999999999999999998877544
No 22
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.50 E-value=1.9e-13 Score=136.78 Aligned_cols=205 Identities=19% Similarity=0.263 Sum_probs=148.4
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
||+.|+++|.+|++.+ .+...+++.+..++..+++.+.+++.+.++.....+..+... +...|...........
T Consensus 99 mA~iR~l~i~~p~~~~---~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~---p~~~C~~~~~~~~~~~ 172 (318)
T PF10324_consen 99 MALIRYLSIKFPMSSR---FQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWV---PPPNCSGFPENYTFPR 172 (318)
T ss_pred HHHHHHHHHHhhcccc---ccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEecccccc---CCCceeeccccccccc
Confidence 5889999999999854 345778899999999999999999998876554443321111 1123763221111111
Q ss_pred C---------------cchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHH
Q psy9472 81 Y---------------PRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVV 145 (647)
Q Consensus 81 ~---------------~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~ 145 (647)
+ .+.+.....++.-++|.++..++...+.+.+++.++++++..+++ .+++.+++++++.+++
T Consensus 173 Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~---~~~~~~tt~li~~~ti 249 (318)
T PF10324_consen 173 YMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK---SKKSDRTTKLILFMTI 249 (318)
T ss_pred cchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc---cccccchHHHHHHHHH
Confidence 1 112333334444689999999999999999987766554443111 4577899999999999
Q ss_pred HHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccc
Q psy9472 146 VFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK 215 (647)
Q Consensus 146 ~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 215 (647)
.|+++.+|+.+..++..+....+ ........+..+...+..+|+..|+++|+.++.+||++++++++|+
T Consensus 250 ~f~i~e~p~gi~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k 318 (318)
T PF10324_consen 250 SFLISELPQGIIFLLESFFEEDS-GLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK 318 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence 99999999999999988744322 2344456677889999999999999999999999999999999874
No 23
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.37 E-value=5.3e-12 Score=123.49 Aligned_cols=240 Identities=18% Similarity=0.203 Sum_probs=158.8
Q ss_pred hHhHHHHHHHHHHHHHHhhHHhhhhhhh---cCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472 303 TYLVPIVFAFIFVVGVLGNGTLVLIFIN---HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS 379 (647)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~---~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 379 (647)
..+..++..+..++|++||++++.+... +++.-++.+..+.+||+++++................+....+..+++.
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII 85 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence 4567888899999999999999888764 3333468999999999999998655443333333323333455678888
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHH--HhhhccchheeeeeeecCCC
Q psy9472 380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAI--LCAIPSMTLSYVRAFKDDTN 457 (647)
Q Consensus 380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~--~~~~~~~~~~~~~~~~~~~~ 457 (647)
.++..+....|.+..+++++--++.|...-+.... +-+++=.+.+..++.+.++.++ ...+|.. ...........
T Consensus 86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl-~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~--~~~~~~~~~~~ 162 (303)
T PF05296_consen 86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFL-WLKRRISKVVPWLLLGSLLISFLNLLSIPLF--IDNHINNNNTN 162 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--eeeeecccccc
Confidence 88888899999999999999999999876543322 1122222334456777888888 3344432 22111100000
Q ss_pred CCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-chhhhhHhhhhhhHHH
Q psy9472 458 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQ-GQTRQIRARKKVAKTV 536 (647)
Q Consensus 458 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~k~~~~~ 536 (647)
.+.+.............+......+..++|+++++++...+...++||.|+++...+ .+..+.+.+.|+.|++
T Consensus 163 ------~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~ 236 (303)
T PF05296_consen 163 ------NSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTM 236 (303)
T ss_pred ------CCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHH
Confidence 111111111112223333444445888999999999999999999999998876543 3556778899999999
Q ss_pred HHHHHHHhhccccHH
Q psy9472 537 LTFVVVFAMCFFPQH 551 (647)
Q Consensus 537 ~~i~~~f~~~w~P~~ 551 (647)
....+.|++++.-..
T Consensus 237 ~sfl~ly~~~~~~~~ 251 (303)
T PF05296_consen 237 ISFLILYIIYFLSLI 251 (303)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888888665443
No 24
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.30 E-value=6.7e-11 Score=114.04 Aligned_cols=253 Identities=13% Similarity=0.203 Sum_probs=157.5
Q ss_pred HhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhh
Q psy9472 304 YLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTK 383 (647)
Q Consensus 304 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 383 (647)
.....+..+.++++++|-++++..+...|++|++.+-++.-++++|++..+..+..... .+-..++..|.+++++.
T Consensus 7 ~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~~~~~s~lC~~Qafli 82 (303)
T PF05462_consen 7 RTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PSAGENSFLCQFQAFLI 82 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCcchhhHhHHH
Confidence 34566777778899999999999999999999999999999999999976543332211 22234577899999999
Q ss_pred hhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceee
Q psy9472 384 DISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFE 463 (647)
Q Consensus 384 ~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (647)
.++..++.+-.++||++=|+.+++... ..++.-....+++|.++++.++.++.... .+....
T Consensus 83 q~f~~as~lWt~~iA~nly~~~~~~~~---------~~~k~e~~Y~l~~wGiPli~a~i~l~~~~---------~g~~G~ 144 (303)
T PF05462_consen 83 QFFMLASFLWTLCIAFNLYLTFVKRYD---------ELEKLEKYYHLVCWGIPLIPAVIPLIGND---------YGPAGN 144 (303)
T ss_pred HHhhHHHHHHHHHHHHHhhheeEEcCc---------cHHHHHHHHHHHHHHHHHHHHHHHHHccC---------CCCCCC
Confidence 999999999999999999999987543 23455567889999999998876653221 112224
Q ss_pred eeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHH
Q psy9472 464 SCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIAC----FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTF 539 (647)
Q Consensus 464 ~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~----~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i 539 (647)
.|+...+.+. + -+..+.+|+.+++. .+....+...+..+ .... .+.+++.|...-+..=
T Consensus 145 WCWI~~~~~~-------~----r~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~---~~~s---d~~~~~~~~~~kL~~Y 207 (303)
T PF05462_consen 145 WCWIKPEWDV-------W----RFALFYIPLWIIIIISAILVGITMRYIYRVIR---NGVS---DNKDKHLKYQLKLVNY 207 (303)
T ss_pred ceeecCCCcc-------h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cccc---hhHHHHHHHHHHHHHH
Confidence 7876433211 1 11233344332221 11111122222111 1111 1111112222234467
Q ss_pred HHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHH-HHHhhhhhccC-chhHHhhcCCccccccc
Q psy9472 540 VVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHIL-RIMSSKIINSR-NANARRFHRPSTYSSTR 602 (647)
Q Consensus 540 ~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ns~-NPiI~~fr~~~~~~~~~ 602 (647)
.++|++||.|..+-.+.+.++. .+ . ...++ ..++- +.-. |.++|++.++...+...
T Consensus 208 p~ifiicw~fa~INRI~~~~~~-~~--~--~l~~Lh~~~s~--lqGf~nsivy~~n~~~~~~~~~ 265 (303)
T PF05462_consen 208 PLIFIICWIFATINRIYNFIGK-NP--F--WLSVLHVGFSP--LQGFFNSIVYGYNNSLMWRYLG 265 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-Cc--h--HHHHHHHHHHH--HHHHHHHHHHHhCCHHHHHHHH
Confidence 8899999999999999887752 22 1 11111 11111 4445 88899988887555444
No 25
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.20 E-value=4.3e-11 Score=116.25 Aligned_cols=260 Identities=15% Similarity=0.192 Sum_probs=156.5
Q ss_pred HHHHHhhHHhhhhhhhcCC----CCCCccchhhHHHHHHHHHHhhcccceeeeee--ec--cccccccccccchhhhhhh
Q psy9472 315 VVGVLGNGTLVLIFINHKS----MRNVPNIYILSLALGDLLVILTCVPFTSTVYT--FE--SWPYGESICKISESTKDIS 386 (647)
Q Consensus 315 ~~g~~~N~~vl~~i~~~~~----l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~--~~--~~~~~~~~C~~~~~~~~~~ 386 (647)
++.++....+++.+.+.|+ .+++.+.++.+.+++|++..+........... .. ....++..-++.....+..
T Consensus 6 ~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~ 85 (283)
T PF10323_consen 6 IVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYF 85 (283)
T ss_pred eehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4556666777777776554 34677889999999999986543332221111 00 1112233345555566677
Q ss_pred HHHHHHHHHHHHHhhhheeeccc-cccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeee
Q psy9472 387 VGVSVFTLTALSADRFFAIVDPL-RKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC 465 (647)
Q Consensus 387 ~~~s~~~l~~ia~dRy~~i~~P~-~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 465 (647)
..+-....+.+|++||.+|++|. + ++...++.+...++++-|+.++++++|.+..... .++...+
T Consensus 86 ~~~~~~gi~lls~nR~~ai~~P~~~-----~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~-~f~~~~~-------- 151 (283)
T PF10323_consen 86 LYIQCIGIVLLSLNRYLAICFPTSR-----HTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDF-YFDNEEN-------- 151 (283)
T ss_pred HHHHHHhHHHHHHhhhheEEeecHH-----HhhhccccchhheeeeeehhhhhheeeeeccCce-eeecccc--------
Confidence 77888899999999999999999 6 6788899999999999999999999986543322 2221110
Q ss_pred ecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhh
Q psy9472 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAM 545 (647)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~ 545 (647)
.. ...+...... ......+...+-.+..+++|..++..+||+.+ ...+..+++.++|.+.+.+..+.++++++
T Consensus 152 ~~---~~~d~~~~~~-~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k---~~s~~~s~~~~rE~~L~~~~~i~~~a~~~ 224 (283)
T PF10323_consen 152 MS---LFVDPEFIQR-NFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK---KKSKSSSRSRRREIRLAIQVFILFCAFFV 224 (283)
T ss_pred ee---eecCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 11 1111111112 22233344556677888999999999997764 22333556667888888888777776655
Q ss_pred ccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH-----HhhcCCcccc
Q psy9472 546 CFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA-----RRFHRPSTYS 599 (647)
Q Consensus 546 ~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI-----~~fr~~~~~~ 599 (647)
... +.+........... +.......+...+.. ..|. ||+. +.+|+++.++
T Consensus 225 ~~~-~~~~~~~~~~~~~~-~~~~~~r~~y~~~~~--~~s~inP~~LLi~n~~lr~~~~~~ 280 (283)
T PF10323_consen 225 ILV-YYIFSNYFAQNFNT-DPIFYLRAFYPILNG--LLSFINPWMLLIFNKDLRKQVRRM 280 (283)
T ss_pred HHH-HHHHHHHHHhcccc-hHHHHHHHHHHHHHH--HHHhhhhHHhhhccHHHHHHHHHH
Confidence 533 33333332322111 111111112222333 6777 9998 6666665443
No 26
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.05 E-value=5e-10 Score=108.82 Aligned_cols=187 Identities=22% Similarity=0.295 Sum_probs=121.8
Q ss_pred Cccceehhhhccc-cccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCC
Q psy9472 1 LSADRFFAIVDPL-RKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYP 79 (647)
Q Consensus 1 isidRy~aI~~P~-~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 79 (647)
+|++||.||++|. + +.++.++.+...+++.-|+.++++++|.+...... +....+ .. -.. + .
T Consensus 96 ls~nR~~ai~~P~~~-----~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~-f~~~~~-~~----~~~----d--~ 158 (283)
T PF10323_consen 96 LSLNRYLAICFPTSR-----HTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFY-FDNEEN-MS----LFV----D--P 158 (283)
T ss_pred HHHhhhheEEeecHH-----HhhhccccchhheeeeeehhhhhheeeeeccCcee-eecccc-ee----eec----C--H
Confidence 5789999999999 5 55689999999999999999999999965433222 111111 00 000 0 0
Q ss_pred CCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Q psy9472 80 NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL 159 (647)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~ 159 (647)
...... .........+-++..+++|..+...++++.+ ++.++..+..++|.+.+.+.++.++++++..+=+.. ..
T Consensus 159 ~~~~~~-~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k---~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~-~~ 233 (283)
T PF10323_consen 159 EFIQRN-FLIAFIFVSVTCVICIVCYGIIFIFIRKRNK---KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIF-SN 233 (283)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 011111 2223344556667888999999999987664 222334556678888888887777766554443333 32
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcc
Q psy9472 160 WFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFC 214 (647)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 214 (647)
....... . +....+..+-.++.-..|.+||+.-.++|+++|+++++.++|
T Consensus 234 ~~~~~~~--~---~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 234 YFAQNFN--T---DPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHhccc--c---hHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 2222221 1 112344456667778899999999999999999999999887
No 27
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.97 E-value=1.2e-09 Score=104.79 Aligned_cols=176 Identities=16% Similarity=0.225 Sum_probs=110.2
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
|++||++||+.|++ |++..+.+..........+++....+- +.....++.. ..|.......+.
T Consensus 82 i~iDr~iaV~~P~~-----Y~~~~~~~y~~~~~~~~~~~s~~~~~~----~~~~~~~~~~------~~C~pp~a~~~~-- 144 (257)
T PF10320_consen 82 IAIDRLIAVCFPLR-----YRTISTRKYLIILLIFPVIYSIFFTVI----GFLYRDDETI------VICNPPLAFHGT-- 144 (257)
T ss_pred HHhhheeeEeehhh-----hhhcccccchhhHhHHHHHHHHHHHhh----eeEecCCccc------ccCCCccccCcc--
Confidence 58999999999999 667777775555555555555544332 2222221111 127654333221
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472 81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW 160 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~ 160 (647)
....+... ..++. +++++.|...+...+++.++ ..++++|..|.+...++.|+..|.-..+...+
T Consensus 145 ~~~~~~~~----~~~in-v~tvivY~i~~~~~~~k~~~----------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v 209 (257)
T PF10320_consen 145 ASQIWSYS----NIIIN-VITVIVYIITIIIFKRKSRS----------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTV 209 (257)
T ss_pred HHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHccc----------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHH
Confidence 11122211 12222 33455666666655543221 23457889999999999999999877776665
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhh
Q psy9472 161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYL 212 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~ 212 (647)
....... .+....+.....++..++.+.|.++|.++|+|||+++++.+
T Consensus 210 ~~~~~~~----~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 210 SLALGLD----GETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHhCCc----HHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 5443322 22234566778899999999999999999999999999864
No 28
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.84 E-value=6.6e-08 Score=94.06 Aligned_cols=266 Identities=12% Similarity=0.094 Sum_probs=154.3
Q ss_pred hhhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccc
Q psy9472 300 RLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKIS 379 (647)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 379 (647)
...+.++++.+.+.+++-.+..+..+.++.+++..|.+.+-++.-|++.|++...+.-...-... ..|...|..-
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~-----i~G~vfC~~P 103 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILA-----IFGAVFCSYP 103 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHH-----hcCccccCCc
Confidence 34556788888888888889999999999888877889999999999999999544322211111 1245566543
Q ss_pred ------hhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHH--HHHHHHHhhhccchheeeee
Q psy9472 380 ------ESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAA--IWIFAILCAIPSMTLSYVRA 451 (647)
Q Consensus 380 ------~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~--~W~~~~~~~~~~~~~~~~~~ 451 (647)
+.+...+-.++......++++|..-+..|.. .......++....+.+ +|.+-..+-.++..+....
T Consensus 104 ~~~~i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~-----~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~- 177 (313)
T PF10321_consen 104 RFIYIMGCIALGSWCGSCIICILLAINRCCELNFPFK-----LKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEY- 177 (313)
T ss_pred hHhhhhhccchhhHHHHHHHHHHHHHHHHHHHhcchh-----hHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCc-
Confidence 3344445567888888999999999998876 3334454554444333 3333333334544432111
Q ss_pred eecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhh
Q psy9472 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKK 531 (647)
Q Consensus 452 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k 531 (647)
.++..++..........|.-....+..++-.+.+.++|..+...++++.+... ..+..+.+++
T Consensus 178 ------------~sw~fDP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~-----s~~~~k~~~q 240 (313)
T PF10321_consen 178 ------------MSWFFDPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYST-----SSQLSKAQRQ 240 (313)
T ss_pred ------------ceEecCccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----chhhhhhhHH
Confidence 12211111100001111222233444555567788899999999988755442 3445567778
Q ss_pred hhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhHH-----hhcCCcccccccc
Q psy9472 532 VAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANAR-----RFHRPSTYSSTRK 603 (647)
Q Consensus 532 ~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI~-----~fr~~~~~~~~~~ 603 (647)
......++.+.+.+.++-|..+.. +.. + ...........- +|+. +|+|| ..|+++.++..+|
T Consensus 241 I~iQs~iIC~f~~i~a~iyv~m~f---~~~----p-~~~i~~~~~~Wq--l~~g~~~iIYl~lNrtIR~~~~k~~~~k 308 (313)
T PF10321_consen 241 IFIQSVIICFFHAIAAVIYVYMQF---FPP----P-PWLIIIGQISWQ--LSHGCPPIIYLTLNRTIRNSVLKMLGPK 308 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeee---ecc----c-HHHHHHHHHHHh--ccCCccceEEEEECHHHHHHHHHHHccc
Confidence 777777777777665444332222 211 1 112222233333 7777 99994 4455544444433
No 29
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=98.81 E-value=1.4e-08 Score=98.95 Aligned_cols=182 Identities=11% Similarity=0.090 Sum_probs=117.5
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhh-heeEeeccCCCCCc--cceeeecCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTL-SYVRAFKDDTNNNT--LFESCYPFPPIDG 77 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~-~~~~~~~~~~~~~~--~~~~C~~~~~~~~ 77 (647)
||++|+.||..|.+ |+.+.+.+.+..+++++|++++....+..+. .-...+..+...-. ..+.|.
T Consensus 88 iaiNRf~ai~fP~~-----y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y~~~~~~~~~~~~~~C~------- 155 (274)
T PF10328_consen 88 IAINRFCAIFFPFK-----YKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYYDPETWSWSYPTDPPCG------- 155 (274)
T ss_pred HHHHHHheeeeHHH-----HHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCcceeccceeeeecCCCCccc-------
Confidence 68999999999999 7778999999999999999999776655442 11111111111000 000121
Q ss_pred CCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHH
Q psy9472 78 YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFF 157 (647)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~ 157 (647)
.+..........+-.+++..++..+..++++.+++...+.+++++++++|.+..+..+.-...|++.++-|...
T Consensus 156 ------~~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~ 229 (274)
T PF10328_consen 156 ------NYSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFI 229 (274)
T ss_pred ------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112223334456666777777777766655544444567778899999999999999999999887765
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHh
Q psy9472 158 FLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKY 211 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~ 211 (647)
.-+. +.. ......+.+.-.+.-++|++|+...|+++|+..++.
T Consensus 230 ~~~~------~~~-----~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~~ 272 (274)
T PF10328_consen 230 PPLS------SNR-----WWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRKK 272 (274)
T ss_pred HHhc------ccc-----HHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHhc
Confidence 4331 111 112223333344556789999999999999999874
No 30
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.65 E-value=1.2e-07 Score=89.01 Aligned_cols=218 Identities=16% Similarity=0.155 Sum_probs=134.7
Q ss_pred CCCccchhhHHHHHHHHHHhh-cccceeeeeeeccccccccccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccc
Q psy9472 335 RNVPNIYILSLALGDLLVILT-CVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLH 413 (647)
Q Consensus 335 ~~~~~~~l~~Lav~Dll~~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~ 413 (647)
.+|.+..+.+||+++++..+. ++|.... ..... .+++..|++..+++-++-..|+.+.+++++---+.|. |-. ..
T Consensus 8 ~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~~-~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItIS-P~~-s~ 83 (265)
T PF03402_consen 8 LKPIDLILIHLALANILVLLSRGIPQTMA-FFGWK-FFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITIS-PSN-SR 83 (265)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHHHHHH-Hhhcc-cCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEe-cCC-ch
Confidence 579999999999999998543 3343222 11111 3589999999999999999999999999995444443 322 11
Q ss_pred cCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHH
Q psy9472 414 SGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVP 493 (647)
Q Consensus 414 ~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip 493 (647)
|+.-+...++.....+...|++.+++.................+.......|.....+.. ..........+-=++.
T Consensus 84 w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~----~~~~~~~~~~~~D~~f 159 (265)
T PF03402_consen 84 WAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYI----VSSLFATLLSFRDVLF 159 (265)
T ss_pred hhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchh----hhhhhhhHHHhhHHHH
Confidence 112223445566677888899988876543322211111111111122345754322211 1111122223333555
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcc-cchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhC
Q psy9472 494 LLIIACFYSLMARSLILSTKNMPGEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYIN 560 (647)
Q Consensus 494 ~~ii~~~y~~i~~~l~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~ 560 (647)
+.+|+..-..+...+.||+++.+.-. .....+...|.|+++++++.+..|++.+..-.++..+....
T Consensus 160 vgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~ 227 (265)
T PF03402_consen 160 VGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSF 227 (265)
T ss_pred HHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHh
Confidence 67888888888888887776554322 23344557889999999999999999999988876654443
No 31
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.64 E-value=3.9e-07 Score=89.48 Aligned_cols=268 Identities=14% Similarity=0.157 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhhcCC-CCCCccchhhHHHHHHHHHHhhcccce---------eeeeeecc-cccccccc
Q psy9472 308 IVFAFIFVVGVLGNGTLVLIFINHKS-MRNVPNIYILSLALGDLLVILTCVPFT---------STVYTFES-WPYGESIC 376 (647)
Q Consensus 308 ~~~~~~~~~g~~~N~~vl~~i~~~~~-l~~~~~~~l~~Lav~Dll~~~~~~~~~---------~~~~~~~~-~~~~~~~C 376 (647)
+++.+.+.+|++.|.+.++.+.++.. .-+.-.+++.|-|++|++.++...... +.....|. -..|+..|
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C 82 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFC 82 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHH
Confidence 46778899999999999998877643 235677899999999999976543322 11111111 12467788
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecC-
Q psy9472 377 KISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD- 455 (647)
Q Consensus 377 ~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~- 455 (647)
.....+...+...+.+++.+--.-||..+.++.. ++++....+.+.+..++...+...+..........
T Consensus 83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~----------~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~ 152 (292)
T PF10317_consen 83 FFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP----------SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAE 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----------chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHH
Confidence 8887788888888999999999999999976443 66677777777777777765544332211100000
Q ss_pred CCCCceeeeeecCCCCCCC---CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhh
Q psy9472 456 TNNNTLFESCYPFPPIDGY---PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKV 532 (647)
Q Consensus 456 ~~~~~~~~~C~~~~~~~~~---~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~ 532 (647)
.........-.+. ...+. ......+......+..+...+++.++--+|.+.++++..++ .++..+..++.
T Consensus 153 ~~~~~p~y~~~~~-~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~------S~~tk~~h~~l 225 (292)
T PF10317_consen 153 LNQFHPEYNLENY-SISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSM------SERTKSMHRQL 225 (292)
T ss_pred HHHhCcccccccc-eeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhc------CHHHHHHHHHH
Confidence 0000000000000 00010 11111122222222222222334444555666665532222 34445677888
Q ss_pred hHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH-----HhhcCCcc
Q psy9472 533 AKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA-----RRFHRPST 597 (647)
Q Consensus 533 ~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI-----~~fr~~~~ 597 (647)
.|.+.+-.+.=+++..|.....++..+....... .+ +....... +.+. ||++ .-+|+.+.
T Consensus 226 v~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~~~~-~e--~~~~~~~~--~~~~~~P~itl~fv~PYR~~i~ 291 (292)
T PF10317_consen 226 VKGLTIQALLPLFFYIPGVIIYFLSQFTGYEHPF-LE--YLIFMLAS--LPPLIDPLITLYFVRPYRKAIL 291 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhccccHH-HH--HHHHHHHH--HHHHhchHhheeeeHhHHHHhc
Confidence 9999999999999999888888887775543221 11 11222222 6667 9999 44565543
No 32
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.55 E-value=9.5e-07 Score=80.41 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=101.2
Q ss_pred CCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHHHHHHHHHHhhhheeecccccc
Q psy9472 333 SMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKL 412 (647)
Q Consensus 333 ~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~ 412 (647)
+++.-.+-++.||.++|++.++..+.........+.-..++..|...+++...+...+-+...+||++-|+.|.+|-...
T Consensus 31 r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~~ 110 (201)
T PF11710_consen 31 RRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWKR 110 (201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 33455566999999999999876544333333334444567899999999999999999999999999999999992100
Q ss_pred --ccCCCc--ccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHH
Q psy9472 413 --HSGIGG--KRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLI 488 (647)
Q Consensus 413 --~~~~~~--~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~ 488 (647)
.+..+. ...+..+.....+.|++...++... . .+.........|....... .+-+...-+
T Consensus 111 ~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~---~------~~~~Y~~~g~WCWi~~~~~-------~~Rl~l~y~ 174 (201)
T PF11710_consen 111 KRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG---L------GGPGYGPAGAWCWIPSRYE-------WYRLWLHYI 174 (201)
T ss_pred ccccccccceEEeeeeeehHHHHHHHHHHHHHHhc---c------ccCcccccCcEEEECCCcH-------HHHHHHHHH
Confidence 000000 1122223333445555544443322 0 0111122346887543321 123333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9472 489 YYAVPLLIIACFYSLMARSLILSTK 513 (647)
Q Consensus 489 ~~~ip~~ii~~~y~~i~~~l~~~~~ 513 (647)
.-.+-...+++.|..|+..+||+.|
T Consensus 175 ~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 175 WRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 5556677888999999999998754
No 33
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=98.37 E-value=4.2e-06 Score=82.11 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=91.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcch-hHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy9472 85 VIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQG-QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYI 163 (647)
Q Consensus 85 ~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~ 163 (647)
+......+...+|+.+++.+...+...++||.|+.+.+..+ +..+.+...|+.|++....+.|+++++-..+.......
T Consensus 180 ~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~ 259 (303)
T PF05296_consen 180 YFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFFF 259 (303)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444457789999999999999999999998888765433 44566677899999988888888776654432222222
Q ss_pred cCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccc
Q psy9472 164 NPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM 216 (647)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 216 (647)
.. . .....+........+...|++-.+-|+++|+++++.++|.+
T Consensus 260 ~~---~------~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k 303 (303)
T PF05296_consen 260 PE---N------SIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK 303 (303)
T ss_pred cc---c------cHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence 11 1 12345677788999999999999999999999999998754
No 34
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.22 E-value=0.00025 Score=68.43 Aligned_cols=185 Identities=16% Similarity=0.236 Sum_probs=103.0
Q ss_pred cchhhHHHHHHHHHHhhcccceeeeeeeccc-----------cccccccccchhhhhhhHHHHHHHHHHHHHhhhheeec
Q psy9472 339 NIYILSLALGDLLVILTCVPFTSTVYTFESW-----------PYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD 407 (647)
Q Consensus 339 ~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~-----------~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~ 407 (647)
.-.+..||+||++.++-.+.-...+....+. ......|.....-..++..++-+-+.+-|+|=|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 4688999999999976544433322222111 01235788877777778888889999999999998854
Q ss_pred cccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHH
Q psy9472 408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFL 487 (647)
Q Consensus 408 P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~ 487 (647)
.- .+......-+.+|..+.++..--....+. +.. ..|...... . +- --
T Consensus 148 ~a-----------g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~---Ps~-------~~Ce~~l~~------a----lp-hY 195 (405)
T PF02101_consen 148 SA-----------GRSTIWLYHMMAWGLPALLCAEGLAMLYY---PSI-------SRCESGLEH------A----LP-HY 195 (405)
T ss_pred cC-----------CCcchhHHHHHHHHHHHHHHHhccceeec---CCH-------Hhhhhhhhh------c----ch-hH
Confidence 22 12334566788899988876543332221 111 134321110 0 11 11
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHH
Q psy9472 488 IYYAVPLLIIAC----FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWF 557 (647)
Q Consensus 488 ~~~~ip~~ii~~----~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~ 557 (647)
+...+|+++.++ +|.+..+++-+.-+.+.+.- ..++++.....-+-++.|.++|.+||+|..+-.++.
T Consensus 196 vttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~y--T~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL 267 (405)
T PF02101_consen 196 VTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIY--TENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLL 267 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHH
Confidence 223345554444 45555444444333322211 111222223344557788999999999999876644
No 35
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.15 E-value=1.5e-05 Score=79.34 Aligned_cols=268 Identities=13% Similarity=0.180 Sum_probs=150.0
Q ss_pred HHHHHHHHHHhhHHhhhhhhhcCCC-CCCccchhhHHHHHHHHHHhhcc---ccee------eeee-ecccccccccccc
Q psy9472 310 FAFIFVVGVLGNGTLVLIFINHKSM-RNVPNIYILSLALGDLLVILTCV---PFTS------TVYT-FESWPYGESICKI 378 (647)
Q Consensus 310 ~~~~~~~g~~~N~~vl~~i~~~~~l-~~~~~~~l~~Lav~Dll~~~~~~---~~~~------~~~~-~~~~~~~~~~C~~ 378 (647)
--+.++++++.|++.++.+.++.+. -..-.+++...|+.|++.+++-. |..- .... .+.+..+.....+
T Consensus 5 ~~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (307)
T PF10326_consen 5 QYIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQI 84 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheee
Confidence 3456788999999999988755433 34556788889999999876543 3211 1111 1233344455666
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecC---
Q psy9472 379 SESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD--- 455 (647)
Q Consensus 379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~--- 455 (647)
...++..+...++..++.-=+.||.++++|.+ . +..+.++.....+..-+.++.+.....+.....+..++
T Consensus 85 l~~~y~~~f~~~~~llaihFiYRY~av~~~~~-----l-~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr 158 (307)
T PF10326_consen 85 LLAIYCGCFGMSFSLLAIHFIYRYWAVCRPKK-----L-RYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLR 158 (307)
T ss_pred hhhhhhhhHHHHHHHHHhHhhhheeeeccchh-----h-ccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhc
Confidence 66667777777777888888999999999987 2 22333333333333333333333322221111110000
Q ss_pred --------CCCCc-eeeeeecC-CCCCCC--CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchh
Q psy9472 456 --------TNNNT-LFESCYPF-PPIDGY--PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT 523 (647)
Q Consensus 456 --------~~~~~-~~~~C~~~-~~~~~~--~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~ 523 (647)
.+.++ ........ .+.++. ..+..............+.+.++++|-.++++++++..+.. .+
T Consensus 159 ~~~~~~y~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~------S~ 232 (307)
T PF10326_consen 159 EELLENYGLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM------SS 232 (307)
T ss_pred cccccccCCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc------Ch
Confidence 00000 00011111 011221 33444444555566677888999999999999995443321 22
Q ss_pred hhhHhhhhhhHHHHHHHH-HHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhh-hccC-chhH-----HhhcCC
Q psy9472 524 RQIRARKKVAKTVLTFVV-VFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKI-INSR-NANA-----RRFHRP 595 (647)
Q Consensus 524 ~~~~~~~k~~~~~~~i~~-~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ns~-NPiI-----~~fr~~ 595 (647)
+..+-+++..+.+.+-++ -.++...|..+......++.+..... ..+...+ +-++ ||++ +++|++
T Consensus 233 ~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~~~~~-------~~~~~~~~~yP~iDpl~~i~~ik~yR~~ 305 (307)
T PF10326_consen 233 KTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGIDLGFFS-------NIISILISLYPAIDPLPVIFIIKDYRKA 305 (307)
T ss_pred hhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCCCCccc-------cHhhhhEEEEeehhhheeeEeeHHHHHh
Confidence 333555666666655544 46677899998888777664433221 1122222 6677 9987 888887
Q ss_pred c
Q psy9472 596 S 596 (647)
Q Consensus 596 ~ 596 (647)
.
T Consensus 306 i 306 (307)
T PF10326_consen 306 I 306 (307)
T ss_pred h
Confidence 5
No 36
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.08 E-value=0.00011 Score=73.23 Aligned_cols=241 Identities=12% Similarity=0.094 Sum_probs=135.4
Q ss_pred hHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccce---eeeee--ec--cccccccc
Q psy9472 303 TYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFT---STVYT--FE--SWPYGESI 375 (647)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~---~~~~~--~~--~~~~~~~~ 375 (647)
......+-.+++++|++.++..++.+..++..+....+++....++.++.++.-+... +..+. .+ +...+...
T Consensus 16 l~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~ 95 (324)
T PF10292_consen 16 LRLSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYR 95 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhH
Confidence 3455666777888888888888888877777777777888888888888865322211 11111 11 22345667
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecC
Q psy9472 376 CKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455 (647)
Q Consensus 376 C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~ 455 (647)
|.+......++...+..+..++++||++|.++.-+ |... ++.....+..+-|++++......+... +.
T Consensus 96 C~~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~-----YE~~-~~~~Gi~l~~~qi~is~~~~~~~~~~~---~~--- 163 (324)
T PF10292_consen 96 CFILRIPYNFGLFLVSFTTVSLVIERTIATFFSKS-----YEKS-GKWLGILLAFFQILISLLILYFVYSDE---DF--- 163 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----hcCC-CccHHHHHHHHHHHHHHHHHHHHHhhh---hc---
Confidence 88888899999999999999999999999999888 5544 223333444444555554332221111 11
Q ss_pred CCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHH
Q psy9472 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT 535 (647)
Q Consensus 456 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~ 535 (647)
.+.....|....+..+ ..........++..++ ..+.+..++++=+|.+++.....-.++-+.++..|..++
T Consensus 164 --~~~~~~yC~~~~~~~~---~~~~~~~~~~~~~~i~----~~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~ 234 (324)
T PF10292_consen 164 --PNERMYYCQASSSSSP---YRVNIPFIVILVLQIL----ALILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRL 234 (324)
T ss_pred --cCccceeeEEecCCCc---hhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHH
Confidence 1233456876544422 1111111111111111 122233333333332222222223345566777888888
Q ss_pred HHHHHHHHhhccccHHHHHHHHH-hCCCCC
Q psy9472 536 VLTFVVVFAMCFFPQHFFFLWFY-INPTAP 564 (647)
Q Consensus 536 ~~~i~~~f~~~w~P~~i~~~~~~-~~~~~~ 564 (647)
+...+.+..+.-..+.+..+... +.+..+
T Consensus 235 L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~ 264 (324)
T PF10292_consen 235 LKPFIILSSIFIFFYIFASIFLRLFNPSMS 264 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 77777776666666555544433 443333
No 37
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.07 E-value=5.8e-05 Score=74.15 Aligned_cols=267 Identities=12% Similarity=0.051 Sum_probs=150.4
Q ss_pred HhHHHHHHHHHHHHHHhhHHhhhhhhhc-CCCCCCccchh---hHHHHHHHHHHhhcccceeeeeeecccccc------c
Q psy9472 304 YLVPIVFAFIFVVGVLGNGTLVLIFINH-KSMRNVPNIYI---LSLALGDLLVILTCVPFTSTVYTFESWPYG------E 373 (647)
Q Consensus 304 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~-~~l~~~~~~~l---~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~------~ 373 (647)
.++...+-++++++++.|.+.++.+..+ +++.+-.++++ +...++|+-.+++.-|..+.....+. ..| +
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~agy-~~G~l~~~f~ 87 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAGY-CVGFLARYFG 87 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEEE-EEeehhhcCC
Confidence 3567788889999999999999987654 44444333332 34677899998888887665544332 111 1
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeee
Q psy9472 374 SICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFK 453 (647)
Q Consensus 374 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~ 453 (647)
..++....+..+....-+-.++.--+-|+.+|.+..+. ...++........+..+..+....... ..+..+.+
T Consensus 88 i~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~------~~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~s~ee 160 (303)
T PF10327_consen 88 ISSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSK------HVLPKWFYIFFYFFCILFPFFIFICFY-FSGMSREE 160 (303)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------CcCcHHHHHHHhhHHHHHHHHHHHHHH-hcCCCHHH
Confidence 23333333444444455555666678899999988772 223444434444444444444433221 11111111
Q ss_pred cCCCCCceeeeeecCC-CCCCC----CCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHh
Q psy9472 454 DDTNNNTLFESCYPFP-PIDGY----PNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRA 528 (647)
Q Consensus 454 ~~~~~~~~~~~C~~~~-~~~~~----~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~ 528 (647)
.........+.|.... ..++. .+..........+.....-.++..+++..+++.+++.+++. .++.-++
T Consensus 161 q~~yI~~nyP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~i------S~~ty~k 234 (303)
T PF10327_consen 161 QMEYIRENYPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKI------SKQTYQK 234 (303)
T ss_pred HHHHHHhhCCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHHHHH
Confidence 1111122334444332 11110 11112222333344455667778888899999888765543 3456678
Q ss_pred hhhhhHHHHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH
Q psy9472 529 RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA 589 (647)
Q Consensus 529 ~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI 589 (647)
++++.+.+.+-.++-.+|-+|..+..+.-.+..+.. .... .....+.. .+|. |-++
T Consensus 235 Hk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~~~--q~i~-~~~~~~f~--~HS~~n~iv 291 (303)
T PF10327_consen 235 HKEAVRSLIAQFATSSICILPPFIFVVVVIFEFEDA--QVIS-EICLAIFS--SHSSVNMIV 291 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCCc--HHHH-HHHHHHHH--HhhHhhhee
Confidence 889999999999999999999988777666543322 1222 22222221 7777 8777
No 38
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.04 E-value=0.00028 Score=64.75 Aligned_cols=236 Identities=13% Similarity=0.198 Sum_probs=139.7
Q ss_pred hhhHhHHHHHHHHHHHHHHhhHHhhh--hhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeee----eeecccccccc
Q psy9472 301 LETYLVPIVFAFIFVVGVLGNGTLVL--IFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTV----YTFESWPYGES 374 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~N~~vl~--~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~----~~~~~~~~~~~ 374 (647)
...+.....+.+..+.+.+.++..++ ++.-+.-.+-+..+++..|.++-++.+.+.+...+.. ....+. ..+.
T Consensus 10 ~~yy~vi~~Fv~st~~stlLt~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~-~~s~ 88 (305)
T PF04789_consen 10 GLYYFVISLFVLSTIASTLLTGAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEF-VQSE 88 (305)
T ss_pred cEEEehHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHH-hccc
Confidence 34445555566666666666654333 2222222234567899999999999876554443322 222222 2344
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeec
Q psy9472 375 ICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD 454 (647)
Q Consensus 375 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~ 454 (647)
.-.+..+...++.++-.++-..||++|....-.--. -.+........+.+..+|++++..-....- ....+..
T Consensus 89 ~f~~~Sy~idf~h~siLfsNlviaIqR~fVFFfr~~-----t~~~F~s~~iyiWL~~vWils~~v~~~l~~--~nC~Y~y 161 (305)
T PF04789_consen 89 LFIFMSYLIDFCHYSILFSNLVIAIQRFFVFFFRNL-----TDKVFESPVIYIWLLLVWILSIGVVYSLMS--NNCRYRY 161 (305)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhheeeeehhh-----hhhhccchHHHHHHHHHHHHHHHHHHHHHh--CCCeeec
Confidence 556677888899999999999999999877763222 223444566777888899999887654432 3333334
Q ss_pred CCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhH
Q psy9472 455 DTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAK 534 (647)
Q Consensus 455 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~ 534 (647)
+....+..-.|.......+ .......-+...++.+.+|+.+. +.|+.+..++...++ ...++.|.+.+|
T Consensus 162 ~~~~~~y~L~C~~~~~~v~-~~~P~~IqiiE~ilQ~~IPi~Il-~iYiAIIiKI~~MKk---------ssLnK~Ei~ILK 230 (305)
T PF04789_consen 162 NKWSKHYQLNCETCNSVVD-ISPPRGIQIIEIILQFGIPIFIL-VIYIAIIIKIIKMKK---------SSLNKNEITILK 230 (305)
T ss_pred ccccccEEEEcCCCCeeEe-eCCCCchhHHHHHHHHhHHHHHH-HHHHHHHHHHHHHhh---------ccCCchhHHHHH
Confidence 4444566667875522111 22233445577888999997654 556665555543322 233456788888
Q ss_pred HHHHHHHHHhhccccHHHHHHHHH
Q psy9472 535 TVLTFVVVFAMCFFPQHFFFLWFY 558 (647)
Q Consensus 535 ~~~~i~~~f~~~w~P~~i~~~~~~ 558 (647)
.-..+.+.|-. +..+..+...
T Consensus 231 QAifIFvlFQ~---ss~VFl~~qt 251 (305)
T PF04789_consen 231 QAIFIFVLFQA---SSCVFLLCQT 251 (305)
T ss_pred HHHHHHHHHHH---HHHHHHhhee
Confidence 87766665544 4444444333
No 39
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.03 E-value=9.7e-05 Score=72.29 Aligned_cols=211 Identities=11% Similarity=0.056 Sum_probs=117.7
Q ss_pred HHHHHHhhHHhhhhhhhcCC--C-CCCccchhhHHHHHHHHHHhhcccc-eeeeeeec------c-ccccccccccchhh
Q psy9472 314 FVVGVLGNGTLVLIFINHKS--M-RNVPNIYILSLALGDLLVILTCVPF-TSTVYTFE------S-WPYGESICKISEST 382 (647)
Q Consensus 314 ~~~g~~~N~~vl~~i~~~~~--l-~~~~~~~l~~Lav~Dll~~~~~~~~-~~~~~~~~------~-~~~~~~~C~~~~~~ 382 (647)
++.+++.+..+++++.++++ . +++.+.+...-++.|++.-+...+. -+...... . ....+....+..++
T Consensus 8 gi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l 87 (275)
T PF02118_consen 8 GIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFL 87 (275)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHH
Confidence 45677788888888888776 3 5566666666666666663332221 11111000 0 11234455666777
Q ss_pred hhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCcee
Q psy9472 383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLF 462 (647)
Q Consensus 383 ~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (647)
.+.+..+-..+.+.++++|+-++..|.+ +++..++ .....++++.++++....+.+.........++ ...
T Consensus 88 ~~~~~~~Q~~~~~~is~nR~t~v~~p~~-----~~~~W~~-~~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~----~~~ 157 (275)
T PF02118_consen 88 QYYFAYVQYLSTILISLNRFTSVLFPIR-----YEKFWKR-YYWIIIIIIFLLPFSFTWNIFISPTYVVYDNG----GFS 157 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHh-----hhHHHHh-hhhhheeeeeehhHHHHHHHHccccEEEEECC----ceE
Confidence 7888888999999999999999999999 5555553 33445555565665554444433333333322 111
Q ss_pred eeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHH
Q psy9472 463 ESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVV 542 (647)
Q Consensus 463 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~ 542 (647)
....+.. ..........+.+++-.++.++++....+++++.+ ++..+.|++..+......++
T Consensus 158 ~~~~~~~--------~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~----------~~~~~~er~L~~is~~~~~~ 219 (275)
T PF02118_consen 158 YSYNDTV--------SWASLSIFSLIYFIIIIIITIITNIITYRRLRKLS----------KRIKSVERNLTIISFIISFV 219 (275)
T ss_pred EEEEecc--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHH
Confidence 1111100 01111122334445555566677777777777642 22334566777776666666
Q ss_pred HhhccccHHH
Q psy9472 543 FAMCFFPQHF 552 (647)
Q Consensus 543 f~~~w~P~~i 552 (647)
+++.-....+
T Consensus 220 ~~~~~~~~~~ 229 (275)
T PF02118_consen 220 QLLIAIWQII 229 (275)
T ss_pred HHHHHHHHHH
Confidence 6655444444
No 40
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.01 E-value=1.3e-05 Score=78.18 Aligned_cols=182 Identities=15% Similarity=0.136 Sum_probs=107.1
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHH---hhhchHhhheeEeeccCCCCCccceeeecCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAIL---CAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDG 77 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 77 (647)
++++|..-+..|.... .....++...++.+..++++. ++-|..+..... ++...+...
T Consensus 127 LainR~~~l~~~~~~~-----~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~--------------sw~fDP~i~ 187 (313)
T PF10321_consen 127 LAINRCCELNFPFKLK-----FLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYM--------------SWFFDPMIF 187 (313)
T ss_pred HHHHHHHHHhcchhhH-----HhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcc--------------eEecCcccc
Confidence 4688998888887622 244556655555554444433 332333221111 111111110
Q ss_pred CCCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHH
Q psy9472 78 YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFF 157 (647)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~ 157 (647)
.......|.-......-++-.+.+.++|..+...++++.+... +.+..+.+++..-...++.+...+.++=|...
T Consensus 188 ~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~-----s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m 262 (313)
T PF10321_consen 188 EGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYST-----SSQLSKAQRQIFIQSVIICFFHAIAAVIYVYM 262 (313)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHee
Confidence 0000122333333333445556788888888888876644432 33445567788888888877777766655443
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccccc
Q psy9472 158 FLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~ 218 (647)
... .. . +++..++.+.-.+++..+|+||..+|+..|++++++++.++.+
T Consensus 263 ~f~----~~--p------~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~r 311 (313)
T PF10321_consen 263 QFF----PP--P------PWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKIR 311 (313)
T ss_pred eee----cc--c------HHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHcccccc
Confidence 321 11 1 3455677778889999999999999999999999999865443
No 41
>KOG4193|consensus
Probab=97.83 E-value=0.00025 Score=75.28 Aligned_cols=250 Identities=12% Similarity=0.083 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccc-cc-ccccchhhhhhh
Q psy9472 309 VFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYG-ES-ICKISESTKDIS 386 (647)
Q Consensus 309 ~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~-~~-~C~~~~~~~~~~ 386 (647)
+...+.++.++.-+++-+. -+++++..+....||+++=++.-++ . +.+.|..+ .. .|....++..++
T Consensus 328 VG~~iSlvcL~lti~ty~~---~~~l~~~~~~i~~~l~~~L~l~~l~-f-------L~~~~~~~~~~~~C~~~a~llhff 396 (610)
T KOG4193|consen 328 VGCIISLVCLLLTIATYLL---FRKLQNDRTKIHINLCLCLFLAELL-F-------LLGIDRTSTSVVLCIAAAILLHFF 396 (610)
T ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHhhcchhHHHHHHHHHHHHHH-H-------hcccccccCcccccHHHHHHHHHH
Confidence 3334444444433333333 3334433377777888773333221 1 11222222 22 799999999999
Q ss_pred HHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeee
Q psy9472 387 VGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY 466 (647)
Q Consensus 387 ~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 466 (647)
..+..+-+.+++++=|+.++.-++ ...+++.....+..|..+.++...........+. .......|+
T Consensus 397 ~LaaF~Wm~leg~hl~~~~v~vf~--------~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~-----~~~~~~~CW 463 (610)
T KOG4193|consen 397 FLAAFFWMLLEGFHLYLLLVEVFR--------SRPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG-----QYGTPRVCW 463 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------cccchHHHHHHHHHhhhhHHHHhheeEEeccCcc-----ccccCCceE
Confidence 999999999999999996655443 4566666666679999998887665443332211 111112387
Q ss_pred cCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhh
Q psy9472 467 PFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSL-ILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAM 545 (647)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~ 545 (647)
...+..- .+ .|+.|+.+++.+++.++... ++-.++.....+ ..+..+..+..+..+.++.+.-+
T Consensus 464 l~~~~~~--------~~-----~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~L~~lLGl 528 (610)
T KOG4193|consen 464 LDTQNGF--------IW-----SFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQP--IASKLENISLIRSALALLFLLGL 528 (610)
T ss_pred EecCCce--------EE-----EEehHHHHHHHHHHHHHHHHHHHHhhcccccCc--chhhHHHHHHHHHHHHHHHHHHH
Confidence 6543321 11 16677777777775554432 222221111111 11111222667777777777777
Q ss_pred ccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH---HhhcCCccccccccccCCCCC
Q psy9472 546 CFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA---RRFHRPSTYSSTRKWDSVSTT 610 (647)
Q Consensus 546 ~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI---~~fr~~~~~~~~~~~~~~~~~ 610 (647)
.|.- .++....+. .. .+..+... +|+. --+| +..+++-.|...+++.++.+.
T Consensus 529 TW~f----gi~s~~~~~-----~~--v~~YlFti--~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~ 584 (610)
T KOG4193|consen 529 TWIF----GIFSWLPGT-----SV--VFAYLFTI--FNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRG 584 (610)
T ss_pred HHHH----HHHHHhccc-----ch--HHHHHHHH--HHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCC
Confidence 7753 222222211 11 12222333 8888 7666 555666666666666654433
No 42
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=97.77 E-value=0.001 Score=63.52 Aligned_cols=107 Identities=13% Similarity=0.005 Sum_probs=70.8
Q ss_pred HhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecccccccc----ccccc
Q psy9472 304 YLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGES----ICKIS 379 (647)
Q Consensus 304 ~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~----~C~~~ 379 (647)
.+...+..+...+....|...++.+...|+.+++--.++---.+.|.+.+....+........ .+..... .=-+.
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~if~~ 84 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILF-SLFPEFLDYKNLIFYI 84 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHH-HhChhhhccccEEeeh
Confidence 455667777788888999999999887777445555666678999999987765543322221 1211111 11112
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhhheeeccccc
Q psy9472 380 ESTKDISVGVSVFTLTALSADRFFAIVDPLRK 411 (647)
Q Consensus 380 ~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~ 411 (647)
+................||+||.+|+..|..|
T Consensus 85 ~~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y 116 (273)
T PF10316_consen 85 GWPSSNLGSIRSILALIIALDRVFAVYFPIFY 116 (273)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 22333445667788899999999999999993
No 43
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=97.77 E-value=9.6e-06 Score=77.64 Aligned_cols=202 Identities=14% Similarity=0.183 Sum_probs=1.6
Q ss_pred HHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHH
Q psy9472 312 FIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSV 391 (647)
Q Consensus 312 ~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~ 391 (647)
+-..+++++-.+++..+...|++|+..+....||++++++..+..+.. ......+.....+..|.....+...+..++.
T Consensus 9 vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~la~f 87 (242)
T PF00002_consen 9 VGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFLASF 87 (242)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHHHHH
Confidence 333444445445555555557777777888899999999886543222 1111111111112359999999999999999
Q ss_pred HHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeecCCCC
Q psy9472 392 FTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPI 471 (647)
Q Consensus 392 ~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 471 (647)
.-+.+.+++-|..+..+.. ..+++.....+..|.++.++........ ...+ ....|+...+.
T Consensus 88 ~Wm~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~gwg~P~~iv~i~~~~~-~~~y--------~~~~CWl~~~~ 149 (242)
T PF00002_consen 88 FWMLVEAFYLYRLLVKVFN---------SSRRRFWWYYLIGWGIPALIVVISVAVN-SDGY--------GNDNCWLSNDW 149 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhheeEEEeec---------ccchhhheeeeeeecCcceeeeeeeeec-cccc--------ccccccccCCC
Confidence 9999999999999988754 2345566677888999988877665443 1111 11356432211
Q ss_pred CCCCCcchhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCCcccchhhhhHhhh-hhhHHHHHHHHHHhhc
Q psy9472 472 DGYPNYPRTVIIMRFLIYYAVPLLIIACFY----SLMARSLILSTKNMPGELQGQTRQIRARK-KVAKTVLTFVVVFAMC 546 (647)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-k~~~~~~~i~~~f~~~ 546 (647)
+ ....+..|.++++..+ ..+.++++++.++. +..+.++.+ +..+....+...+-++
T Consensus 150 -~------------~~~~f~~P~~~~l~in~vi~~~v~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~L~~llg~~ 210 (242)
T PF00002_consen 150 -G------------FIWAFVGPVLIILLINIVIFILVLRVLVRKSRSS------DKSEKKKRRKKILRASLILLPLLGIT 210 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -c------------eEEEEEecccceecccchhheeeEEeehhhhhhh------hhhhccchhhhHHHHHHHHHHHHHHH
Confidence 1 0122445555554444 33444444332211 111122222 3677777778888888
Q ss_pred cccHH
Q psy9472 547 FFPQH 551 (647)
Q Consensus 547 w~P~~ 551 (647)
|....
T Consensus 211 w~~~~ 215 (242)
T PF00002_consen 211 WLFGI 215 (242)
T ss_dssp -----
T ss_pred heeee
Confidence 88743
No 44
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.66 E-value=0.00056 Score=66.51 Aligned_cols=73 Identities=12% Similarity=0.361 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhccccccc
Q psy9472 140 VLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSK 219 (647)
Q Consensus 140 ~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~ 219 (647)
+..=.++|++||+|-.+..+.+.+++. + .++..+-..++.+.=.+|.++|++-++-.++.+...++|...+.
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~~-~-------~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~~~~ 275 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGKN-P-------FWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQFTKF 275 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-c-------hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcch
Confidence 446788899999999999998877532 1 22333444566667789999999999998988887776655444
Q ss_pred c
Q psy9472 220 I 220 (647)
Q Consensus 220 ~ 220 (647)
.
T Consensus 276 ~ 276 (303)
T PF05462_consen 276 G 276 (303)
T ss_pred h
Confidence 3
No 45
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=97.10 E-value=0.043 Score=52.70 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhHHhhhhhhhcCCCC-CCccchhhHHHHHHHHHHhhcc--cceeee-------eeecccccccccccc
Q psy9472 309 VFAFIFVVGVLGNGTLVLIFINHKSMR-NVPNIYILSLALGDLLVILTCV--PFTSTV-------YTFESWPYGESICKI 378 (647)
Q Consensus 309 ~~~~~~~~g~~~N~~vl~~i~~~~~l~-~~~~~~l~~Lav~Dll~~~~~~--~~~~~~-------~~~~~~~~~~~~C~~ 378 (647)
+--+.++++.+.|-+-++.+...|+.+ ..-.++++.-|+-|++.++.-+ |..+.. ...++|-.+...-..
T Consensus 10 ~Pk~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~ 89 (310)
T PF10319_consen 10 IPKIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQ 89 (310)
T ss_pred HHHHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHH
Confidence 334566788889999999988877765 3555789999999999876443 433221 122333222111111
Q ss_pred chhhhhhh-HHHHHHHHHHHHHhhhheeecccc
Q psy9472 379 SESTKDIS-VGVSVFTLTALSADRFFAIVDPLR 410 (647)
Q Consensus 379 ~~~~~~~~-~~~s~~~l~~ia~dRy~~i~~P~~ 410 (647)
.......+ ...|=..|..==+.||+++++|..
T Consensus 90 ~~ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~ 122 (310)
T PF10319_consen 90 HLLSIRCSFISGSYAILHIHFVYRYLVLFNSKF 122 (310)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhCcHH
Confidence 11111111 222223333444899999999866
No 46
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.05 E-value=0.025 Score=56.32 Aligned_cols=232 Identities=14% Similarity=0.146 Sum_probs=123.0
Q ss_pred hhhHhHHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCcc-chhhHHHHHHHHHHhhcccceee------eeeec--cccc
Q psy9472 301 LETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPN-IYILSLALGDLLVILTCVPFTST------VYTFE--SWPY 371 (647)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~-~~l~~Lav~Dll~~~~~~~~~~~------~~~~~--~~~~ 371 (647)
....+..++..++.++++++....+-.++++.-..+.+. +++.+|..+++=.... ....+. ....+ +..+
T Consensus 18 ~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y-~~~~~~~lyrsf~~~~dpC~i~f 96 (328)
T PF02117_consen 18 WNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISY-AIIQIWSLYRSFFYSDDPCSILF 96 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCeeeEe
Confidence 334456667777788888888888888877776666554 5566777666654222 111110 11111 2345
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeee
Q psy9472 372 GESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRA 451 (647)
Q Consensus 372 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~ 451 (647)
.+..|.....+..++....++.-.++.+||.+|-..|-. |+ +.+......+.+.+-+.++... .+ ..
T Consensus 97 ~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~-----~~-~~~~~~g~~l~i~~li~s~~~~--~~-----i~ 163 (328)
T PF02117_consen 97 TSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKY-----YS-KKSYIIGIILSILVLILSFITG--FI-----IY 163 (328)
T ss_pred ecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhh-----hh-hhhHHHHHHHHHHHHHHHHHHe--eE-----EE
Confidence 567899888888999889999999999999999988865 22 1121121112222222222211 11 11
Q ss_pred eecCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhh
Q psy9472 452 FKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKK 531 (647)
Q Consensus 452 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k 531 (647)
. ++ +..+....|...+.... ...... ..+.+++.+. -++....+++.-+|+.++.. =.-+.+-+.++...
T Consensus 164 ~-~~-p~~gyv~~C~~~p~~s~-----~~~~~~-~~~~~~l~i~-~~i~s~~l~~~nkk~e~~~~-f~v~~Ry~~~Eni~ 233 (328)
T PF02117_consen 164 W-DD-PLDGYVPSCFYPPKNSV-----NRFNIF-LIVCFVLTIF-NLIVSIFLMYYNKKKEKKTR-FDVNSRYQKRENIN 233 (328)
T ss_pred e-CC-CCccccccccCCChhHH-----HHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHH
Confidence 1 11 22233467865433221 111111 1112222222 22234444444444433211 11223334466678
Q ss_pred hhHHHHHHHHHHhhccccHHHHHHH
Q psy9472 532 VAKTVLTFVVVFAMCFFPQHFFFLW 556 (647)
Q Consensus 532 ~~~~~~~i~~~f~~~w~P~~i~~~~ 556 (647)
.++.+..+.+.-++|.+-|.+...+
T Consensus 234 ST~aI~~i~~~Q~i~~~iys~~v~~ 258 (328)
T PF02117_consen 234 STKAICIISISQFICMFIYSFGVFI 258 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777654443
No 47
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.88 E-value=0.062 Score=54.62 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=25.3
Q ss_pred chhhhhhhHHHHHHHHHHHHHhhhheeecccc
Q psy9472 379 SESTKDISVGVSVFTLTALSADRFFAIVDPLR 410 (647)
Q Consensus 379 ~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~ 410 (647)
.+++.........+.+.++++||.+|-..--.
T Consensus 126 ~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~d 157 (365)
T PF03125_consen 126 GGFLRWHYMFSAIFCLLAIVIERCFATYFIKD 157 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566789999999999999999888
No 48
>KOG4564|consensus
Probab=96.83 E-value=0.026 Score=57.55 Aligned_cols=253 Identities=12% Similarity=0.095 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeecc------------ccccccc
Q psy9472 308 IVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFES------------WPYGESI 375 (647)
Q Consensus 308 ~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~------------~~~~~~~ 375 (647)
+++.+-..++++.=++.+.++..-|++|-..|++=.||.++=++-++..+........... -..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 3444444444444444555666667888778888889988888876655444332221110 1245678
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecC
Q psy9472 376 CKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDD 455 (647)
Q Consensus 376 C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~ 455 (647)
|+....+...+..+.-+=+.+=.+.-|-.+.--.. .-+++......+.|.+++++..+..+..... ++
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~---------ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~---~d 296 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF---------SERRYFWLYLLIGWGVPAVFVVVWAIVRLYL---ED 296 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec---------cCccHHHHHHHHhhCCcHHHhhhHHhHheee---cc
Confidence 99888777777777766666555555544443222 1255666778899999999888876654211 11
Q ss_pred CCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhhHH
Q psy9472 456 TNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT 535 (647)
Q Consensus 456 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~ 535 (647)
..|+....... ..|. .-.-..+++++-.++.+.|++.+-++-|.. +.......+|++|-
T Consensus 297 -------~~CW~~~~~~~-~~WI-------i~gPi~~ai~vNf~flinIvrILv~KLr~~------~~~~~~~y~K~vKa 355 (473)
T KOG4564|consen 297 -------TGCWDSNDTGH-IWWI-------IRGPILLAILVNFIFLINIVRILVTKLRAS------NASETDQYRKLVKA 355 (473)
T ss_pred -------ccccccCCCcc-eEEE-------EeccHHHHHHHHHHHHHHHHHHHHHHhcCc------cccchHHHHHHHHH
Confidence 25775444322 1111 111223334444445555666554433322 12222336788888
Q ss_pred HHHHHHHHhhccccHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhhhccC-chhH---HhhcCCcccccccccc
Q psy9472 536 VLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSSKIINSR-NANA---RRFHRPSTYSSTRKWD 605 (647)
Q Consensus 536 ~~~i~~~f~~~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ns~-NPiI---~~fr~~~~~~~~~~~~ 605 (647)
.++.+=+|-+-++.+. +.++.. ..... ....-.+ ++|. --++ |.|-|.+.+...||..
T Consensus 356 TLvLIPLfGI~~ilf~-------~~P~~~-~~~~v--~~~~~~~--L~SfQGf~VAvlYCFlN~EVq~elrr~W 417 (473)
T KOG4564|consen 356 TLVLIPLFGIHYILFA-------FRPDED-TLREV--YLYFELF--LGSFQGFFVAVLYCFLNGEVQAELRRKW 417 (473)
T ss_pred HHHHHHHcCCeeEEEE-------ecCchH-HHHHH--HHHHHHH--HHhccchheehheeecCHHHHHHHHHHH
Confidence 8877777766655432 222221 11111 1111111 6677 5555 8888888777766543
No 49
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=96.60 E-value=0.011 Score=57.71 Aligned_cols=173 Identities=14% Similarity=0.140 Sum_probs=89.2
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCC
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPN 80 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 80 (647)
||++|+-+|..|.+ |++..++. ...+++++.+.++....+.+.........++... . .-... ..
T Consensus 102 is~nR~t~v~~p~~-----~~~~W~~~-~~~~i~~i~~~p~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~------~~ 165 (275)
T PF02118_consen 102 ISLNRFTSVLFPIR-----YEKFWKRY-YWIIIIIIFLLPFSFTWNIFISPTYVVYDNGGFS--Y--SYNDT------VS 165 (275)
T ss_pred HHHHHHHHHhhHHh-----hhHHHHhh-hhhheeeeeehhHHHHHHHHccccEEEEECCceE--E--EEEec------cc
Confidence 57899999999999 55566644 3445555566665554443332222222211111 0 00000 00
Q ss_pred CcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Q psy9472 81 YPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW 160 (647)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~ 160 (647)
+ ..........+++-+++.++++....+++++.+ .+.++.|++..+..++..+++.+.-+...+..+.
T Consensus 166 ~--~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~----------~~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~~ 233 (275)
T PF02118_consen 166 W--ASLSIFSLIYFIIIIIITIITNIITYRRLRKLS----------KRIKSVERNLTIISFIISFVQLLIAIWQIINSFA 233 (275)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111122333344555566667777777776432 2233457777777777777777666554442221
Q ss_pred HHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHH
Q psy9472 161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKY 207 (647)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~ 207 (647)
... ...+ .. +....+.....=.-+...|++-.+++++.|++
T Consensus 234 ~~~-~~~~--~~---~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 234 FFF-DFLP--IS---SFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred Hhh-cccc--HH---HHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 111 1111 11 12222222222244677799999999999985
No 50
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=96.59 E-value=0.044 Score=54.30 Aligned_cols=240 Identities=15% Similarity=0.173 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHHHhhHHhhhhhhhcCCCC-CCccchhhH----HHHHHHHHHhhcccceeeeeeecccccc-----cc
Q psy9472 305 LVPIVFAFIFVVGVLGNGTLVLIFINHKSMR-NVPNIYILS----LALGDLLVILTCVPFTSTVYTFESWPYG-----ES 374 (647)
Q Consensus 305 ~~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~-~~~~~~l~~----Lav~Dll~~~~~~~~~~~~~~~~~~~~~-----~~ 374 (647)
......-.+.++++.-|++.++.+.++...+ +.....+++ ..+.|+..+.+..|........+ .+.| ..
T Consensus 5 ~~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~-~~~G~l~~~gv 83 (302)
T PF10318_consen 5 FYSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAG-YPLGILSYFGV 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHh-hCCcchhhccc
Confidence 3455666778889999999999877653322 344444444 44577777777777654433322 1111 23
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeec
Q psy9472 375 ICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKD 454 (647)
Q Consensus 375 ~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~ 454 (647)
...+..++..........++..+=-+||.++....+. ...++.-.......++.+.+..+|.......++ ..
T Consensus 84 ~~~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~~-------~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~-~~ 155 (302)
T PF10318_consen 84 PTPIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRSR-------SLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQE-EA 155 (302)
T ss_pred ChHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccc-------ccchhhHHHHHHHHHHHHHHHHHHHhcCCccHH-HH
Confidence 3455556666666677777788889999999865430 112222333444455555555555544322111 10
Q ss_pred CCCCCceeeeeecCC--CCCC---CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhh
Q psy9472 455 DTNNNTLFESCYPFP--PIDG---YPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRAR 529 (647)
Q Consensus 455 ~~~~~~~~~~C~~~~--~~~~---~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 529 (647)
.. .-....-|.+.. +..+ ... ...+......+..++....+++....+...++++.+. ...++..+.+
T Consensus 156 k~-~~~~~~pc~~~~~~~~~~~fv~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~-----~~S~~T~k~Q 228 (302)
T PF10318_consen 156 KQ-EVLKKYPCPPPEFFDNPPVFVLST-DSWYILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQKK-----TMSKKTRKMQ 228 (302)
T ss_pred HH-HHHhhccCCchhhcCCCCeEEEcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh-----hhCHHHHHHH
Confidence 00 000111222210 1000 000 0112222223333333344444444455555554331 1133444666
Q ss_pred hhhhHHHHHHHHHHhhc-cccHHHHHHHHHhC
Q psy9472 530 KKVAKTVLTFVVVFAMC-FFPQHFFFLWFYIN 560 (647)
Q Consensus 530 ~k~~~~~~~i~~~f~~~-w~P~~i~~~~~~~~ 560 (647)
+|..+.+.+-+++.++. -.|.....+...++
T Consensus 229 kkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~ 260 (302)
T PF10318_consen 229 KKFLIALIIQVLIPFIFLFIPLIYFIISIIFG 260 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 67776666655544443 46887777665554
No 51
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=96.56 E-value=0.14 Score=50.03 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=97.8
Q ss_pred cccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeee
Q psy9472 374 SICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFK 453 (647)
Q Consensus 374 ~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~ 453 (647)
..=++..++.+.+.+.+.+.-++.++-|..-+..|.+ +....++-....+-++.++++++++|.+...+....-
T Consensus 101 ~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~------~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql 174 (307)
T PF10322_consen 101 HFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRN------HKKICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQL 174 (307)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccc------hhHHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeC
Confidence 3445666788888999999999999999999999997 2445566667788889999999999887765543322
Q ss_pred cCCCCCceeeeeecCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccchhhhhHhhhhhh
Q psy9472 454 DDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVA 533 (647)
Q Consensus 454 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~ 533 (647)
+..-..+....=. .. .+.........++....-++.+++++..++.++|+.+.+. ..+...+++.|+|+..+
T Consensus 175 ~~Pf~fGAI~I~~---~~----~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k~~l-~~~~~s~~~~KAE~SLT 246 (307)
T PF10322_consen 175 DPPFPFGAIIITS---TG----SWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLKSSL-SSQRRSKQSRKAERSLT 246 (307)
T ss_pred CCCCCCCEEEEEE---Ec----ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhcccchhhheeHH
Confidence 1111111100000 00 0111111223444555567788889999999999875211 11122344557777777
Q ss_pred HHHHHHHHHHh
Q psy9472 534 KTVLTFVVVFA 544 (647)
Q Consensus 534 ~~~~~i~~~f~ 544 (647)
.|+.++++-++
T Consensus 247 ~Tmi~mliP~i 257 (307)
T PF10322_consen 247 LTMISMLIPYI 257 (307)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 52
>KOG4193|consensus
Probab=96.56 E-value=0.036 Score=59.30 Aligned_cols=163 Identities=12% Similarity=0.139 Sum_probs=83.2
Q ss_pred ccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcchhhhhhhhhhhhhHHHHHHH
Q psy9472 24 RATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIAC 103 (647)
Q Consensus 24 ~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~ 103 (647)
...++-....+..|...++............... +.. ...|+.+.+... +..|+-|+.+++.
T Consensus 422 ~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~~---~~~--~~~CWl~~~~~~-------------~~~F~GPv~~ii~ 483 (610)
T KOG4193|consen 422 RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEGQ---YGT--PRVCWLDTQNGF-------------IWSFLGPVTLIIL 483 (610)
T ss_pred ccchHHHHHHHHHhhhhHHHHhheeEEeccCccc---ccc--CCceEEecCCce-------------EEEEehHHHHHHH
Confidence 3445555565689999877754433221111100 111 112876543321 1116788888888
Q ss_pred HHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q psy9472 104 FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGF 183 (647)
Q Consensus 104 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (647)
+++.++...-.+-.+.....+...++. ++.+..+..++.++++-+.|.=-.. ..... . ...+..
T Consensus 484 ~Ni~~Fv~t~~~l~~~~~~~~~~~~~~-~~~~~~~~~l~L~~lLGlTW~fgi~----s~~~~---~--------~~v~~Y 547 (610)
T KOG4193|consen 484 VNIVMFVVTLKKLLRRLSKLQPIASKL-ENISLIRSALALLFLLGLTWIFGIF----SWLPG---T--------SVVFAY 547 (610)
T ss_pred HHHHHHHHHHHHHhhcccccCcchhhH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHhcc---c--------chHHHH
Confidence 886544433222111111111111111 1225677777777777777754221 21111 0 112333
Q ss_pred HHhhhhc---hhhHHHHHHhcHHHHHHHHHhhcccccccc
Q psy9472 184 CLGFINS---CINPIALYCVSGTFRKYFQKYLFCKMSSKI 220 (647)
Q Consensus 184 ~l~~~ns---~~NPiiY~~~~~~fr~~~~~~~~~~~~~~~ 220 (647)
++..+|+ ..=.++|++++++.|++.++.++|.+.+..
T Consensus 548 lFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~~~ 587 (610)
T KOG4193|consen 548 LFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGDSS 587 (610)
T ss_pred HHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCCCC
Confidence 4444444 566778999999999999999987655543
No 53
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.51 E-value=0.0032 Score=59.51 Aligned_cols=173 Identities=13% Similarity=0.138 Sum_probs=101.9
Q ss_pred ccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcchhhhhhhhhhhhhHHHHHHH
Q psy9472 24 RATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIAC 103 (647)
Q Consensus 24 ~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~ 103 (647)
..++.....+.+.|++..++........................-|......... ...+. ....+.-++.+.+|+.
T Consensus 90 k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~---~~~~~-~~~~~~D~~fvgLM~~ 165 (265)
T PF03402_consen 90 KAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIV---SSLFA-TLLSFRDVLFVGLMIW 165 (265)
T ss_pred hcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhh---hhhhh-hHHHhhHHHHHHHHHh
Confidence 3445566677888999887765322211110000000100111226543222111 11222 2233444667778888
Q ss_pred HHHHHHHHHHhccCCCCCCc-chhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q psy9472 104 FYSLMARSLILSTKNMPGEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVG 182 (647)
Q Consensus 104 ~y~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (647)
.-..+.-.+.||+++.+.-. .+..++...|.|++++++..+..|+..+..-.+..+........+ ++..+.
T Consensus 166 aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~~--------~~~~~~ 237 (265)
T PF03402_consen 166 ASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNSP--------WLLNIS 237 (265)
T ss_pred hhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCCc--------ceeEHH
Confidence 88888887877766654322 223344457999999999999999999998877765544332221 122355
Q ss_pred HHHhhhhchhhHHHHHHhcHHHHHHH
Q psy9472 183 FCLGFINSCINPIALYCVSGTFRKYF 208 (647)
Q Consensus 183 ~~l~~~ns~~NPiiY~~~~~~fr~~~ 208 (647)
.+++..-+.+-|++-...+++..+.+
T Consensus 238 ~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 238 VFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred HHHhHHhHhhChHHhhccCchHHHHh
Confidence 67888889999999999998887765
No 54
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=96.45 E-value=0.086 Score=52.65 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=55.1
Q ss_pred hHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHH
Q psy9472 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFR 205 (647)
Q Consensus 126 ~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr 205 (647)
++-+.+++.|+.+++..++.+..+.-+-+.+..+............ ....+..+. ...-..+.+=|++.....++.|
T Consensus 221 ~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~y~al~e~~-~~~P~Y~ii~~~~~~~~~k~~r 297 (324)
T PF10292_consen 221 ERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKP--NYFALAELN-HIFPLYSIISPLILYRKIKKIR 297 (324)
T ss_pred hHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChh--hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667788999888888888877777777766555433222111 111222222 2455678888999998999999
Q ss_pred HHHHHhhc
Q psy9472 206 KYFQKYLF 213 (647)
Q Consensus 206 ~~~~~~~~ 213 (647)
++.++.+.
T Consensus 298 ~~~~~~l~ 305 (324)
T PF10292_consen 298 KKRKKRLE 305 (324)
T ss_pred HHHHHHHH
Confidence 88877663
No 55
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=96.44 E-value=0.0019 Score=64.25 Aligned_cols=116 Identities=14% Similarity=0.252 Sum_probs=77.2
Q ss_pred CCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHH-HHHHHhhhhHHHHH
Q psy9472 80 NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFV-VVFAMCFFPQHFFF 158 (647)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~-~~f~~~~~P~~i~~ 158 (647)
.+..............+.+.++++|-.++++++++..+.. +.+.++-+++..+.+.+=+ +=+++...|..+..
T Consensus 191 ~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~------S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~ 264 (307)
T PF10326_consen 191 NWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM------SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVF 264 (307)
T ss_pred chhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc------ChhhHHHHHHHHHHHHHHhhhhheeeecchhhee
Confidence 3444444555555667889999999999999995433321 2233344556666555544 34566889988877
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHH
Q psy9472 159 LWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQ 209 (647)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~ 209 (647)
....++..... ...+...+..+-+++||++-.+.-|+||++++
T Consensus 265 ~~p~~~i~~~~--------~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 265 ILPFFGIDLGF--------FSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred eeeccCCCCCc--------cccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 76655533221 22345667889999999999999999999864
No 56
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=96.29 E-value=0.22 Score=49.11 Aligned_cols=149 Identities=14% Similarity=0.067 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceee------eee-e------cccccc
Q psy9472 306 VPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTST------VYT-F------ESWPYG 372 (647)
Q Consensus 306 ~~~~~~~~~~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~------~~~-~------~~~~~~ 372 (647)
......+.+.+.++.+.+++..+...++.-+-+..-++-++++-++.++..+.-.+. ... . .....+
T Consensus 11 ~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~ 90 (328)
T PF01534_consen 11 ARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLE 90 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCC
Confidence 333444445555556666666555544432333445555555555554432221111 110 0 011234
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchheeeeee
Q psy9472 373 ESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAF 452 (647)
Q Consensus 373 ~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~ 452 (647)
+..|.+...+.+.+..++..=-+.+++.=|++....-. .-.-.++....-+++|.++.+..+..+......
T Consensus 91 ~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~-------~e~i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vd-- 161 (328)
T PF01534_consen 91 NSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWG-------SEAIEKKSSYFHLVAWGIPAVLTIAVLALRKVD-- 161 (328)
T ss_pred CCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccC-------cchhhhhcchhhhHHhhhhHHHHHHHHHhcccc--
Confidence 67899998888888888887777888888888765433 112345666779999999999888766554322
Q ss_pred ecCCCCCceeeeeecC
Q psy9472 453 KDDTNNNTLFESCYPF 468 (647)
Q Consensus 453 ~~~~~~~~~~~~C~~~ 468 (647)
.++..+.|...
T Consensus 162 -----gD~ltGiC~Vg 172 (328)
T PF01534_consen 162 -----GDELTGICFVG 172 (328)
T ss_pred -----cccccceeEEe
Confidence 22445678753
No 57
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=96.19 E-value=0.04 Score=54.17 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHH
Q psy9472 100 IIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILR 179 (647)
Q Consensus 100 ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~ 179 (647)
++.++-.+|.+.++++..+ -+++.+++.++..|.+.+-+++=+++..|-....++..+..... ....
T Consensus 195 ~~~~~R~ki~~~L~~~~~~------~S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~~-------~~~e 261 (292)
T PF10317_consen 195 VIFFLRRKILKFLNKKSSS------MSERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYEH-------PFLE 261 (292)
T ss_pred HHHHHHHHHHHHHHhhhhh------cCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-------HHHH
Confidence 3444555666666542221 13344446677888888888888889998887777776654322 2344
Q ss_pred HHHHHHhhhhchhhHHHHHHhcHHHHHHHHH
Q psy9472 180 IVGFCLGFINSCINPIALYCVSGTFRKYFQK 210 (647)
Q Consensus 180 ~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 210 (647)
.+...+..+.+.+||++...+=+.||++++|
T Consensus 262 ~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 262 YLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 5566678899999999999999999999864
No 58
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=95.99 E-value=0.089 Score=52.13 Aligned_cols=105 Identities=18% Similarity=0.298 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHH-hhhhHHHHHHHHHhcCCCCCChhhHH
Q psy9472 97 PLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAM-CFFPQHFFFLWFYINPTAPDDYNDFW 175 (647)
Q Consensus 97 p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~-~~~P~~i~~~~~~~~~~~~~~~~~~~ 175 (647)
....+++....+.+.++++.+. +.+++..|.++|..+.+.+=+.+..+ .-.|.....+....+...
T Consensus 197 ~~~~~~~f~~~~~~~l~~~~~~-----~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~~~-------- 263 (302)
T PF10318_consen 197 IFIQIIFFAFLIIYYLLKSQKK-----TMSKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGYYN-------- 263 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhchh-----hhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--------
Confidence 3333334444444445444331 11344555666777666655555444 556877766655443221
Q ss_pred HHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcc
Q psy9472 176 HILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFC 214 (647)
Q Consensus 176 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 214 (647)
+.+..++..+...+..+.-++..+.+|.+|+.++++++|
T Consensus 264 q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 264 QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 223456677888999999999999999999999999987
No 59
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=95.79 E-value=0.24 Score=48.49 Aligned_cols=65 Identities=18% Similarity=0.355 Sum_probs=34.7
Q ss_pred hhHHHHHHH----HHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy9472 95 AVPLLIIAC----FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWF 161 (647)
Q Consensus 95 ~~p~~ii~~----~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~ 161 (647)
.+|++++.+ .|.+..+++-..-+.....-.. +.++....+-+-.+.|.++|.+||+|-.+--++-
T Consensus 199 Y~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~--~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL 267 (405)
T PF02101_consen 199 YIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTE--NERRLGAQIKIKFFKIMLVFYICWLPNIINGSLL 267 (405)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhccccccH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHH
Confidence 356555554 4445544444333332222111 1122223344556678899999999988876644
No 60
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=95.66 E-value=0.18 Score=51.23 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhhchhhHHHHHHhcHHHHHHHHHhhcccc
Q psy9472 176 HILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM 216 (647)
Q Consensus 176 ~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~ 216 (647)
..+..+......+++.+=|.+-....++.|+++++.+...+
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~ 323 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR 323 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence 34555677778888888888888899999999998886443
No 61
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=95.48 E-value=0.033 Score=54.90 Aligned_cols=107 Identities=14% Similarity=0.237 Sum_probs=76.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCC
Q psy9472 88 MRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 167 (647)
Q Consensus 88 ~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~ 167 (647)
...+++..+-.+++.+++..+++.+++.+++.. .+..++.+++.+.+.+-.++-.+|-+|..+...........
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS------~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~~ 269 (303)
T PF10327_consen 196 ILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS------KQTYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFED 269 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCC
Confidence 334444555666777778888888765544322 34455677888899988899999999988877655543221
Q ss_pred CCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHHHH
Q psy9472 168 PDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKY 207 (647)
Q Consensus 168 ~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~ 207 (647)
. +.+..+......++|.+|-++-.+.++.||+.
T Consensus 270 ~-------q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 270 A-------QVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred c-------HHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 1 34556777888999999999999999999984
No 62
>KOG4564|consensus
Probab=95.02 E-value=0.23 Score=50.92 Aligned_cols=158 Identities=14% Similarity=0.192 Sum_probs=88.7
Q ss_pred chhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcchhhhhhhhhhhhhHHHHHHHHH
Q psy9472 26 TRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFY 105 (647)
Q Consensus 26 ~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y 105 (647)
++.-..-.++.|.+..++..+......... +. .|...... ....| + .-...++++++-.++.
T Consensus 266 r~~~~~y~~iGWG~P~v~v~~Wai~r~~~~---d~-------~CW~~~~~-~~~~W-----I--i~gPi~~ai~vNf~fl 327 (473)
T KOG4564|consen 266 RRYFWLYLLIGWGVPAVFVVVWAIVRLYLE---DT-------GCWDSNDT-GHIWW-----I--IRGPILLAILVNFIFL 327 (473)
T ss_pred ccHHHHHHHHhhCCcHHHhhhHHhHheeec---cc-------cccccCCC-cceEE-----E--EeccHHHHHHHHHHHH
Confidence 345566777889999888888766542211 11 27644332 11111 1 1222345566666777
Q ss_pred HHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Q psy9472 106 SLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185 (647)
Q Consensus 106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (647)
..|.|.+-+.-|..... ...+.+|++|-.++.+=+|-+-.+.+ .+.+ +.+ ........+...|
T Consensus 328 inIvrILv~KLr~~~~~------~~~~y~K~vKaTLvLIPLfGI~~ilf-------~~~P--~~~--~~~~v~~~~~~~L 390 (473)
T KOG4564|consen 328 INIVRILVTKLRASNAS------ETDQYRKLVKATLVLIPLFGIHYILF-------AFRP--DED--TLREVYLYFELFL 390 (473)
T ss_pred HHHHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHHcCCeeEEE-------EecC--chH--HHHHHHHHHHHHH
Confidence 77777776544332222 11236677777766666665544331 1111 111 1112333345566
Q ss_pred hhhhchhhHHHHHHhcHHHHHHHHHhhcccccc
Q psy9472 186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218 (647)
Q Consensus 186 ~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~ 218 (647)
..+.=.+=-++||+.|++.|.++||.+...+-.
T Consensus 391 ~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~~~ 423 (473)
T KOG4564|consen 391 GSFQGFFVAVLYCFLNGEVQAELRRKWSRWRLS 423 (473)
T ss_pred HhccchheehheeecCHHHHHHHHHHHHhcChh
Confidence 667777778899999999999999988655443
No 63
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=94.78 E-value=0.073 Score=45.33 Aligned_cols=123 Identities=11% Similarity=0.118 Sum_probs=77.0
Q ss_pred ccchhhHHHHHHHHHHhhcccceeeeeeeccc---cccccccccchhhhhhhHHHHHHHHHHHHHhhhheeecccccccc
Q psy9472 338 PNIYILSLALGDLLVILTCVPFTSTVYTFESW---PYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHS 414 (647)
Q Consensus 338 ~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~ 414 (647)
+-.|+.++.++.++..+....-........+- .+.+..=+-...+..++.....+...+|++||-..|.+|++
T Consensus 3 P~vYI~~M~i~gi~~~~~~~v~~~~~~~~~~~~Y~~yr~~~G~~~TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~---- 78 (153)
T PF03383_consen 3 PFVYIYNMIICGIIDKFFIFVDFWIPLFLPDEGYEEYRQFFGKEVTLFGTFSYLHPLFLTVLMTINRIYIVLFPFG---- 78 (153)
T ss_pred CEEEEeHHHHhhHHHHHHHHhhhhhhhccChhHHHHHHHHhCCEEeeeehHHHHHHHHHHHHHHHhheEEEEecCC----
Confidence 34677888888887755422211111111110 00011122234456667778889999999999999999999
Q ss_pred CCCcccccchhhhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeeec
Q psy9472 415 GIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 467 (647)
Q Consensus 415 ~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 467 (647)
-..+.+.+|.+..+.++.++.+...+.|.+..-...++.. .......|.+
T Consensus 79 -~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~--~~~f~s~Cap 128 (153)
T PF03383_consen 79 -SEIWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDAR--TFSFVSACAP 128 (153)
T ss_pred -CccccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEee--eeEEEEccCC
Confidence 3447899999999998888888877777665444444332 2334456765
No 64
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=94.65 E-value=0.73 Score=44.58 Aligned_cols=214 Identities=14% Similarity=0.122 Sum_probs=104.4
Q ss_pred HHHHHhhHHhhhhhhhcCCCCCCccchhhHHHHHHHHHHhhcccceeeeeeeccccccccccccchhhhhhhHHHHHHHH
Q psy9472 315 VVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTL 394 (647)
Q Consensus 315 ~~g~~~N~~vl~~i~~~~~l~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~l 394 (647)
++|++..+.-+....|.+ ..++-.++.-+.++++...+= ....- ... .+|. +..|.+..-+.......-....
T Consensus 5 ~i~~~l~i~Pl~wH~ra~--N~~~~~li~Wl~l~nl~~~IN-aiIW~-~n~-~~~~--~~wCDI~~kl~~~~~~g~~~a~ 77 (283)
T PF02076_consen 5 FIAFVLLIVPLPWHWRAR--NIGTCSLIFWLFLSNLIYFIN-AIIWR-DND-INWW--PVWCDISTKLIIGSSVGIPAAS 77 (283)
T ss_pred HHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHh-hhhcC-CCC-CccC--ceeeeehHHHHHHHHHHHHHHH
Confidence 344444443333333333 245667888899999888442 22211 111 2232 2799999877777666655555
Q ss_pred HHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHhhhccchhee-eeeeecCCCCCceeeeeecCCCCCC
Q psy9472 395 TALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSY-VRAFKDDTNNNTLFESCYPFPPIDG 473 (647)
Q Consensus 395 ~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~~ 473 (647)
++|+-.-|. |..+-+.. .....++|+...=..+++.++++.....++... ....-+ ...|.+.....
T Consensus 78 lcI~r~L~~-I~s~r~~~---~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ~~Rf~I~e-------~~GC~~~~~~s- 145 (283)
T PF02076_consen 78 LCIMRRLYR-IASARAVS---LSRSEKRRRIIIDLLICFGIPILQMALHYIVQGHRFDIVE-------DVGCYPAIYPS- 145 (283)
T ss_pred HHHHHHHHH-HhccccCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEec-------ccCCccCCCCC-
Confidence 555543332 33322210 122234677777788888888887665544332 222222 24676432221
Q ss_pred CCCcchhhhhhHHHHHHHHHHHH--HHHHHH-HHHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccH
Q psy9472 474 YPNYPRTVIIMRFLIYYAVPLLI--IACFYS-LMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQ 550 (647)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~ip~~i--i~~~y~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~ 550 (647)
.....+.++-|.++ +...|. ..++...|+++..++.-+.+ ++.-+..|..| +..+.++.+++.+|.
T Consensus 146 ---------~~~~~l~~iwp~i~~lia~vYa~lt~~~f~~rr~~f~~~l~~s-~s~l~~~Rf~R-L~~la~~~i~~~~P~ 214 (283)
T PF02076_consen 146 ---------WPTIFLFIIWPPIFSLIAAVYAILTLRRFIRRRKQFRDILSSS-NSGLNTSRFFR-LLALALVIILIYLPL 214 (283)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcccHHHHHH-HHHHHHHHHHHHHHH
Confidence 11222222223222 222232 22333333332211111111 11112234444 666778888889999
Q ss_pred HHHHHHHH
Q psy9472 551 HFFFLWFY 558 (647)
Q Consensus 551 ~i~~~~~~ 558 (647)
.+..++..
T Consensus 215 ~i~~~v~n 222 (283)
T PF02076_consen 215 SIYYLVSN 222 (283)
T ss_pred HHHHHHHH
Confidence 99988843
No 65
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=93.24 E-value=0.34 Score=36.01 Aligned_cols=69 Identities=4% Similarity=0.062 Sum_probs=50.4
Q ss_pred HHHHhHhHHHHHHHHHHHHHhhh-hHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHH
Q psy9472 130 IRARKKVAKTVLTFVVVFAMCFF-PQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGT 203 (647)
Q Consensus 130 ~~~~~k~~~~~~~i~~~f~~~~~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~ 203 (647)
+++-+|.++.+++==++|+++|+ |...-.+-......... ..++..++.++..+|..+|-++|++.-|.
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p-----~~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGP-----SFWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----chHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 34556788999999999999999 97766554442222111 14566788899999999999999986543
No 66
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=91.85 E-value=0.7 Score=34.34 Aligned_cols=67 Identities=4% Similarity=0.104 Sum_probs=42.4
Q ss_pred hHhhhhhhHHHHHHHHHHhhccc-cHHHHHHHHHhCCCCCCCchhHHHHHHHHhhhh-hccC-chhHHhhcCCc
Q psy9472 526 IRARKKVAKTVLTFVVVFAMCFF-PQHFFFLWFYINPTAPDDYNDFWHILRIMSSKI-INSR-NANARRFHRPS 596 (647)
Q Consensus 526 ~~~~~k~~~~~~~i~~~f~~~w~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ns~-NPiI~~fr~~~ 596 (647)
.++-+|.++.+++=-++|+++|+ |...-..-.....+. .+. +.+..+.+..+ +|.. |-++|.+|++-
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~-~p~---~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGH-GPS---FWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCc---hHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 45567888999999999999999 877655544422222 111 11122222222 7888 99999998753
No 67
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=90.24 E-value=0.98 Score=42.25 Aligned_cols=167 Identities=13% Similarity=0.248 Sum_probs=89.5
Q ss_pred ccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcchhhhhhhhhhhhhHHHHHHH
Q psy9472 24 RATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIAC 103 (647)
Q Consensus 24 ~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~ 103 (647)
..+.-..+....+|+.++..-.-....+-.+.+.... ..+.-.|.......+. ......-+.-.++.+.+|+++. .
T Consensus 129 F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~--~~y~L~C~~~~~~v~~-~~P~~IqiiE~ilQ~~IPi~Il-~ 204 (305)
T PF04789_consen 129 FESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWS--KHYQLNCETCNSVVDI-SPPRGIQIIEIILQFGIPIFIL-V 204 (305)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccc--ccEEEEcCCCCeeEee-CCCCchhHHHHHHHHhHHHHHH-H
Confidence 3355667778889999988766544444333333322 3333346644111100 0112233466778889998655 4
Q ss_pred HHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q psy9472 104 FYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGF 183 (647)
Q Consensus 104 ~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (647)
.|..+..++..-++ ....+.|.+.+|..+.+.++|-+ +..+.. +.+..+... .....+..+-.
T Consensus 205 iYiAIIiKI~~MKk---------ssLnK~Ei~ILKQAifIFvlFQ~---ss~VFl----~~qt~~~~~-~tAFlIKR~iN 267 (305)
T PF04789_consen 205 IYIAIIIKIIKMKK---------SSLNKNEITILKQAIFIFVLFQA---SSCVFL----LCQTFKFNV-ATAFLIKRIIN 267 (305)
T ss_pred HHHHHHHHHHHHhh---------ccCCchhHHHHHHHHHHHHHHHH---HHHHHH----hheeeeecc-hHHHHHHHHHH
Confidence 56555444432111 11223577788877666555544 432222 222211111 11123334445
Q ss_pred HHhhhhchhhHHHHHHhcHHHHHHHHHh
Q psy9472 184 CLGFINSCINPIALYCVSGTFRKYFQKY 211 (647)
Q Consensus 184 ~l~~~ns~~NPiiY~~~~~~fr~~~~~~ 211 (647)
-+..+.-+..|......+||.|+.+...
T Consensus 268 T~ei~agaatP~ffffTs~eirk~~s~k 295 (305)
T PF04789_consen 268 TMEIFAGAATPCFFFFTSKEIRKLVSSK 295 (305)
T ss_pred HHHHHhhccCCeEEEEehHHHHHHHHhh
Confidence 5566777889999999999999987543
No 68
>PF13853 7tm_4: Olfactory receptor
Probab=88.42 E-value=0.0098 Score=51.27 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=71.4
Q ss_pred hhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCC-CCCCCCcchhhhhhhhhhhhhHHHHHHHHHHHH
Q psy9472 30 ILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPI-DGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM 108 (647)
Q Consensus 30 ~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i 108 (647)
..+.++.|+.+++.+++....... ....+.-+..+++ ...... ..+...++.+......+..+.|+.+++++|..|
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~--l~~~nii~~f~c~-~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~I 80 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLS--LCFCNIIHHFCCD-PPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRI 80 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHee--CCCCCCCcceeeC-HHHhcccCCchhhhheeeecccceeEEEEeeccccceeEE
Confidence 456677898888887776654332 2222111222111 111111 222233455555666677789999999999999
Q ss_pred HHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Q psy9472 109 ARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL 159 (647)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~ 159 (647)
.+.+.|... .+.++|+..+...+..+..+.+.|.....+
T Consensus 81 l~avlki~S------------~~~r~KAfsTC~sHL~vv~lfy~~~~~~y~ 119 (144)
T PF13853_consen 81 LRAVLKIPS------------AEGRSKAFSTCSSHLTVVSLFYGTVIFMYL 119 (144)
T ss_pred Eehhhcccc------------cccccccccccccCceEEEEeeeeeEEEEe
Confidence 998875332 234568999999999999888888655444
No 69
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=87.54 E-value=3.8 Score=36.64 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=29.3
Q ss_pred cccccccchhhhhhhHHHHHHHHHHHHHhhhheeecccc
Q psy9472 372 GESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLR 410 (647)
Q Consensus 372 ~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~ 410 (647)
.-..|.+..-.......+.....+++|++||+.|.+-.|
T Consensus 113 tI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 113 TIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred EEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 456788876655555566666777899999999998666
No 70
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=87.26 E-value=6.2 Score=38.32 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=49.4
Q ss_pred HHHHHHHhHhHHHHHHHHHH-HHHhhhhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHhhhhchhhHHHHHHhcHHHH
Q psy9472 127 TRQIRARKKVAKTVLTFVVV-FAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFR 205 (647)
Q Consensus 127 ~~~~~~~~k~~~~~~~i~~~-f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr 205 (647)
++..+.+++..|.+.+-++. ..+|+.|-.+.+....+..... .+....+......=+.+||+.-.+.=+.||
T Consensus 235 ~~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~~~-------~~~n~~~~iAls~FPf~DPlAii~~lP~~R 307 (310)
T PF10319_consen 235 KKTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGIDLG-------RWNNYFSVIALSAFPFLDPLAIILCLPAFR 307 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcCChh-------HHHHHHHHHHHHHccccCchHhheecHHhh
Confidence 34444556666666665544 4568889888877666654321 344455555666778999999888889999
Q ss_pred HH
Q psy9472 206 KY 207 (647)
Q Consensus 206 ~~ 207 (647)
++
T Consensus 308 ~r 309 (310)
T PF10319_consen 308 NR 309 (310)
T ss_pred cc
Confidence 75
No 71
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=86.77 E-value=7.5 Score=35.85 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=35.8
Q ss_pred cccccccccchhhhhhhHHHHHHHHHHHHHhhhheeecccc
Q psy9472 370 PYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLR 410 (647)
Q Consensus 370 ~~~~~~C~~~~~~~~~~~~~s~~~l~~ia~dRy~~i~~P~~ 410 (647)
..+...++.......+....+++.-..+++||++|....-+
T Consensus 79 iI~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~ 119 (236)
T PF02175_consen 79 IIDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEK 119 (236)
T ss_pred EEchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34566788888888899999999999999999999999777
No 72
>PF13853 7tm_4: Olfactory receptor
Probab=85.74 E-value=0.015 Score=50.08 Aligned_cols=118 Identities=18% Similarity=0.259 Sum_probs=74.1
Q ss_pred hhhhHHHHHHHHHhhhccchheeeeeeecCCCCCceeeeee-cCCCCCCCC-CcchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy9472 426 ILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY-PFPPIDGYP-NYPRTVIIMRFLIYYAVPLLIIACFYSL 503 (647)
Q Consensus 426 ~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-~~~~~~~~~-~~~~~~~~~~~~~~~~ip~~ii~~~y~~ 503 (647)
..+.++.|+.+++..++....... .+..+..++. .|. +.......+ ..+..+...........|+.+++++|..
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~--l~~~nii~~f--~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~ 79 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLS--LCFCNIIHHF--CCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIR 79 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHee--CCCCCCCcce--eeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeE
Confidence 345677888888877776654332 2222222221 222 111111112 2233344444556677899999999999
Q ss_pred HHHHHHHhcCCCCCcccchhhhhHhhhhhhHHHHHHHHHHhhccccHHHHHHHHHh
Q psy9472 504 MARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYI 559 (647)
Q Consensus 504 i~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~~~w~P~~i~~~~~~~ 559 (647)
|...+.|.. +.+.++|+..+...+..+..+.++|..+.++....
T Consensus 80 Il~avlki~------------S~~~r~KAfsTC~sHL~vv~lfy~~~~~~y~~~~~ 123 (144)
T PF13853_consen 80 ILRAVLKIP------------SAEGRSKAFSTCSSHLTVVSLFYGTVIFMYLSPRS 123 (144)
T ss_pred EEehhhccc------------ccccccccccccccCceEEEEeeeeeEEEEeccCc
Confidence 999887642 33556699999999999999999998776665544
No 73
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=81.66 E-value=3.8 Score=39.47 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.0
Q ss_pred Cccceehhhhccccccc
Q psy9472 1 LSADRFFAIVDPLRKLH 17 (647)
Q Consensus 1 isidRy~aI~~P~~~~~ 17 (647)
||+||-+|+..|..+++
T Consensus 102 Ia~dR~~A~~fPI~y~~ 118 (273)
T PF10316_consen 102 IALDRVFAVYFPIFYHN 118 (273)
T ss_pred HHHHHHHHHcCCHHHHc
Confidence 68999999999999655
No 74
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=77.95 E-value=7.6 Score=38.12 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=62.2
Q ss_pred eehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCCcch
Q psy9472 5 RFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT 84 (647)
Q Consensus 5 Ry~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 84 (647)
|-+-+..|.+|. ....+-....+-++.++++++++|.+...+.-.--+....-+ .=......+ ..+..
T Consensus 128 Rl~il~~p~~~~------~i~~~i~~~~~P~i~i~p~~~~f~~~pa~G~C~Ql~~Pf~fG---AI~I~~~~~---~~~~~ 195 (307)
T PF10322_consen 128 RLIILYSPRNHK------KICRKIFRIWIPFIFIYPFCFTFPMFPALGYCRQLDPPFPFG---AIIITSTGS---WFNIR 195 (307)
T ss_pred HHHheeCccchh------HHHHhHHHHHHHHHHHHHHHHHHHccCCcEEEEeCCCCCCCC---EEEEEEEcc---cccch
Confidence 445556676643 255555566777778888888877654332210000000000 000000001 11112
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHhHhHHHHHHHHHHHH
Q psy9472 85 VIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFA 148 (647)
Q Consensus 85 ~~~~~~~~~~~~p~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~ 148 (647)
........ ...-+..+++.+..++.++++.+.+.. +.+++...+|.|+-.+.|.+++++-++
T Consensus 196 ~~~~~l~~-s~~~~~~iii~N~lm~~Klr~~k~~l~-~~~~s~~~~KAE~SLT~Tmi~mliP~i 257 (307)
T PF10322_consen 196 NSIFHLFF-SIFWMISIIILNILMFFKLRKLKSSLS-SQRRSKQSRKAERSLTLTMISMLIPYI 257 (307)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccc-chhhcccchhhheeHHHHHHHHHHHHH
Confidence 22222222 334445667788888888876552111 112234455667777777766665444
No 75
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=76.15 E-value=52 Score=32.90 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=23.5
Q ss_pred HHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy9472 130 IRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYI 163 (647)
Q Consensus 130 ~~~~~k~~~~~~~i~~~f~~~~~P~~i~~~~~~~ 163 (647)
.+.....++.+..+.+.-++|..-|.+...+...
T Consensus 228 ~~Eni~ST~aI~~i~~~Q~i~~~iys~~v~~l~~ 261 (328)
T PF02117_consen 228 KRENINSTKAICIISISQFICMFIYSFGVFILRN 261 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888888888887777665554433
No 76
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=68.72 E-value=1.6 Score=41.51 Aligned_cols=116 Identities=13% Similarity=0.238 Sum_probs=0.0
Q ss_pred ccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhheeEeeccCCCCCccceeeecCCCCCCCCCC
Q psy9472 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNY 81 (647)
Q Consensus 2 sidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 81 (647)
++|=|..++.+.. ..+++.....+..|..+++......... ...+.. ..|+...+ ...
T Consensus 94 ~~~l~~~~~~~~~---------~~~~~~~~~~~~gwg~P~~iv~i~~~~~-~~~y~~--------~~CWl~~~--~~~-- 151 (242)
T PF00002_consen 94 AFYLYRLLVKVFN---------SSRRRFWWYYLIGWGIPALIVVISVAVN-SDGYGN--------DNCWLSND--WGF-- 151 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhheeEEEeec---------ccchhhheeeeeeecCcceeeeeeeeec-cccccc--------ccccccCC--Cce--
Confidence 4556666666533 2245566677888999988876654433 111111 12743321 110
Q ss_pred cchhhhhhhhhhhhhHHHHHHHHHHH----HHHHHHhccCCCCCCcchhHHHHHHHh-HhHHHHHHHHHHHHHhhhhH
Q psy9472 82 PRTVIIMRFLIYYAVPLLIIACFYSL----MARSLILSTKNMPGELQGQTRQIRARK-KVAKTVLTFVVVFAMCFFPQ 154 (647)
Q Consensus 82 ~~~~~~~~~~~~~~~p~~ii~~~y~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~~~~~i~~~f~~~~~P~ 154 (647)
...+..|..+++..+.. +.+.+.++.+. .+.+..++++ +..+..+....++-+.|+..
T Consensus 152 ---------~~~f~~P~~~~l~in~vi~~~v~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~L~~llg~~w~~~ 214 (242)
T PF00002_consen 152 ---------IWAFVGPVLIILLINIVIFILVLRVLVRKSRS------SDKSEKKKRRKKILRASLILLPLLGITWLFG 214 (242)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ---------EEEEEecccceecccchhheeeEEeehhhhhh------hhhhhccchhhhHHHHHHHHHHHHHHHheee
Confidence 11245566655544443 33333332221 1111222222 46777777888888888873
No 77
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=49.90 E-value=2.5e+02 Score=27.27 Aligned_cols=28 Identities=14% Similarity=0.403 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHhCC
Q psy9472 534 KTVLTFVVVFAMCFFPQHFFFLWFYINP 561 (647)
Q Consensus 534 ~~~~~i~~~f~~~w~P~~i~~~~~~~~~ 561 (647)
+-+..++.+-.+|.+--.++.++..+.+
T Consensus 206 ~~V~~vt~ic~~cF~ir~i~~~~~~~~~ 233 (281)
T PF06454_consen 206 RKVGFVTIICSVCFLIRCIMVLFSAFDK 233 (281)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3355556666666666666666655543
No 78
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=49.01 E-value=45 Score=32.44 Aligned_cols=27 Identities=15% Similarity=0.496 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy9472 135 KVAKTVLTFVVVFAMCFFPQHFFFLWFY 162 (647)
Q Consensus 135 k~~~~~~~i~~~f~~~~~P~~i~~~~~~ 162 (647)
|..| ++++.++.+++.+|..+..++..
T Consensus 196 Rf~R-L~~la~~~i~~~~P~~i~~~v~n 222 (283)
T PF02076_consen 196 RFFR-LLALALVIILIYLPLSIYYLVSN 222 (283)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 77888888899999999998843
No 79
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=47.89 E-value=11 Score=32.33 Aligned_cols=46 Identities=9% Similarity=0.142 Sum_probs=36.4
Q ss_pred CccceehhhhccccccccCCCCcccchhhhhhhHHHHHHHHHhhhchHhhh
Q psy9472 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLS 51 (647)
Q Consensus 1 isidRy~aI~~P~~~~~~~y~~~~~~~~~~~~i~~~W~~~~~~~~p~~~~~ 51 (647)
|+++|-..|.+|.+. +.+.|.++.+..+.++.+..+..-+-|++..
T Consensus 65 Mti~Ri~iV~~P~~~-----~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~ 110 (153)
T PF03383_consen 65 MTINRIYIVLFPFGS-----EIWFSDKKLWIYCGIIAILSFISLLIPYFSD 110 (153)
T ss_pred HHHhheEEEEecCCC-----ccccccchhHHHHHHHHHHHHHHHHhhcCCC
Confidence 578999999999983 2368999999999988888877766555543
No 80
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=38.09 E-value=1.4e+02 Score=27.90 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=16.0
Q ss_pred ccccccccchhhhhhhHHHHHHHHHHHH
Q psy9472 371 YGESICKISESTKDISVGVSVFTLTALS 398 (647)
Q Consensus 371 ~~~~~C~~~~~~~~~~~~~s~~~l~~ia 398 (647)
.++..|.+.......+.......+.+=+
T Consensus 51 ~s~~~C~~r~~~~~l~f~l~~~~ll~K~ 78 (238)
T PF00003_consen 51 PSDILCTLRRWLFSLGFTLIFSALLAKT 78 (238)
T ss_pred cCCcEEEEeeeeeeeehHhhhhHHHHhh
Confidence 3467898877766555544444444333
No 81
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=31.30 E-value=87 Score=22.00 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=14.0
Q ss_pred HHHHhHhHHHHHHHHHHHHHhhh
Q psy9472 130 IRARKKVAKTVLTFVVVFAMCFF 152 (647)
Q Consensus 130 ~~~~~k~~~~~~~i~~~f~~~~~ 152 (647)
+++.+|.-.+++.++++|++-|+
T Consensus 32 qk~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 32 QKRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777776666553
No 82
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=30.24 E-value=3e+02 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=19.9
Q ss_pred hhhhhhhHHHHHHHHHhhhchHhhhee
Q psy9472 27 RCTILIVAAIWIFAILCAIPSMTLSYV 53 (647)
Q Consensus 27 ~~~~~~i~~~W~~~~~~~~p~~~~~~~ 53 (647)
+.....-+++|.++.+.++..+.....
T Consensus 134 ~~s~yfH~~aW~iP~~~ti~vL~~~~V 160 (328)
T PF01534_consen 134 KKSSYFHLVAWGIPAVLTIAVLALRKV 160 (328)
T ss_pred hhcchhhhHHhhhhHHHHHHHHHhccc
Confidence 455666788999999998876665543
No 83
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=25.72 E-value=1.5e+02 Score=27.12 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=19.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhccC
Q psy9472 91 LIYYAVPLLIIACFYSLMARSLILSTK 117 (647)
Q Consensus 91 ~~~~~~p~~ii~~~y~~i~~~~~~~~~ 117 (647)
-+.-.+-.+.++..|..|+..++++.|
T Consensus 173 y~~~~~~~~~~i~iY~~if~~lrr~~~ 199 (201)
T PF11710_consen 173 YIWRFIIIFAIIIIYIAIFFYLRRRIR 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 334456667888899999999986544
No 84
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=22.49 E-value=6.8e+02 Score=23.86 Aligned_cols=53 Identities=23% Similarity=0.168 Sum_probs=30.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhheeeccccccccCCCcccccchhhhhhHHHHHHHHHh
Q psy9472 383 KDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILC 439 (647)
Q Consensus 383 ~~~~~~~s~~~l~~ia~dRy~~i~~P~~~~~~~~~~~~~~~~~~~~i~~~W~~~~~~ 439 (647)
......+--+.+.++|++|++---.|-... ....+.+.....+........+-
T Consensus 89 l~i~~~v~~lllsLLAIqRFllyFfP~~Ek----~v~~~~k~~~~~I~~lY~~~~~k 141 (267)
T PF10325_consen 89 LYIITQVFHLLLSLLAIQRFLLYFFPSSEK----YVNFSQKNIKKIIWFLYIFFILK 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhh----hhhhhhhhHHHHHHHHHHHHHHH
Confidence 334445556778899999999999987421 11233444444444444444443
No 85
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=22.04 E-value=26 Score=32.46 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=12.2
Q ss_pred Cccceehhhhcccc
Q psy9472 1 LSADRFFAIVDPLR 14 (647)
Q Consensus 1 isidRy~aI~~P~~ 14 (647)
+++|||+|....-+
T Consensus 106 ftIERfiAl~~A~~ 119 (236)
T PF02175_consen 106 FTIERFIALKMAEK 119 (236)
T ss_pred HHHHHHHHHHHHHh
Confidence 47999999999777
No 86
>KOG2575|consensus
Probab=21.17 E-value=87 Score=31.57 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.6
Q ss_pred HhHhHHHHHHHHHHHHHhhhhHHH
Q psy9472 133 RKKVAKTVLTFVVVFAMCFFPQHF 156 (647)
Q Consensus 133 ~~k~~~~~~~i~~~f~~~~~P~~i 156 (647)
=.|..+..++++++|+++|.|+..
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~ 277 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLL 277 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999754
No 87
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=20.65 E-value=88 Score=22.76 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=16.4
Q ss_pred hhhhhhhhhHHHHHH-HHHHHHHHHHHh
Q psy9472 88 MRFLIYYAVPLLIIA-CFYSLMARSLIL 114 (647)
Q Consensus 88 ~~~~~~~~~p~~ii~-~~y~~i~~~~~~ 114 (647)
+..++..+.|++++. ++..++.+.+.+
T Consensus 23 l~~vll~LtPlfiisa~lSwkLaK~ie~ 50 (74)
T PF15086_consen 23 LTTVLLILTPLFIISAVLSWKLAKAIEK 50 (74)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334445567877665 555567777754
Done!