RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9472
(647 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 145 bits (369), Expect = 1e-39
Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 14/249 (5%)
Query: 326 LIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDI 385
L+ + K +R NI++L+LA+ DLL +LT P+ WP+G+++CK+ +
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 386 SVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMT 445
+ S+ LTA+S DR+ AIV PLR R R +++ +W+ A+L ++P +
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRR-----IRTPRRAKVLILVVWVLALLLSLPPLL 115
Query: 446 LSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMA 505
S++R T +C P + + R+ ++ L+ + +PLL+I Y+L+
Sbjct: 116 FSWLR-----TVEEGNVTTCLIDFPEE---STKRSYTLLSTLLGFVLPLLVILVCYTLIL 167
Query: 506 RSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD 565
R+L ++ R +K AK +L VVVF +C+ P H L + P +
Sbjct: 168 RTLRKRARSGA-SQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIW 226
Query: 566 DYNDFWHIL 574
++
Sbjct: 227 RLLPTALLI 235
Score = 100 bits (252), Expect = 7e-24
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ AIV PLR R R +++ +W+ A+L ++P + S++R T
Sbjct: 72 ISIDRYLAIVHPLRYRR-----IRTPRRAKVLILVVWVLALLLSLPPLLFSWLR-----T 121
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
+C P + + R+ ++ L+ + +PLL+I Y+L+ R+L ++
Sbjct: 122 VEEGNVTTCLIDFPEE---STKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGA 178
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
R +K AK +L VVVF +C+ P H L + P + +
Sbjct: 179 -SQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTAL---L 234
Query: 181 VGFCLGFINSCINPI 195
+ L ++NSC+NPI
Sbjct: 235 ITLWLAYVNSCLNPI 249
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 67.5 bits (165), Expect = 5e-12
Identities = 62/244 (25%), Positives = 110/244 (45%), Gaps = 27/244 (11%)
Query: 308 IVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFE 367
+V++ IF G++GN +V+ + ++ +IY+L+LA+ DLL ++T +PF Y
Sbjct: 45 VVYSTIFFFGLVGN-IIVIYVLTKTKIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYILF 102
Query: 368 SWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTIL 427
W +GE CKI I S+ +T +S DR+ AIV P++ + +
Sbjct: 103 QWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNK-----INTVKYGYI 157
Query: 428 IVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFL 487
+ IWI +I+ P + + + KD TL C F + N+ + +
Sbjct: 158 VSLVIWIISIIETTPILFVYTTK--KDH---ETLI--CCMFYN-NKTMNWKLFINFEINI 209
Query: 488 IYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCF 547
I +PL I+ YS + +L K+ + +A K VL V++F + +
Sbjct: 210 IGMLIPLTILLYCYSKILITLKGINKS--------KKNKKA----IKLVLIIVILFVIFW 257
Query: 548 FPQH 551
P +
Sbjct: 258 LPFN 261
Score = 36.3 bits (84), Expect = 0.046
Identities = 47/221 (21%), Positives = 86/221 (38%), Gaps = 28/221 (12%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ AIV P++ + ++ IWI +I+ P + + + KD
Sbjct: 132 MSVDRYIAIVHPVKSNK-----INTVKYGYIVSLVIWIISIIETTPILFVYTTK--KDH- 183
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
TL C F + N+ + +I +PL I+ YS + +L K+
Sbjct: 184 --ETLI--CCMFYN-NKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINKS-- 236
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQH---FFFLWFYINPTAPDDYNDFWHI 177
+ +A K VL V++F + + P + F + ++ + +
Sbjct: 237 ------KKNKKA----IKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQY 286
Query: 178 LRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
V + + CINP+ VS F K+ +K L +S
Sbjct: 287 ALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTS 327
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 62.7 bits (152), Expect = 2e-10
Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 10/142 (7%)
Query: 303 TYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTST 362
+ + I + IF++G+ GN +++I K ++ + +IYI +LA+ DL+ + + F
Sbjct: 98 SEYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFV---IDFPFI 153
Query: 363 VYT-FESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRA 421
+Y F+ W +G+ +CK+ ++ I ++F +T +S DR+FAI+ P+ R
Sbjct: 154 IYNEFDQWIFGDFMCKVISASYYIGFFSNMFLITLMSIDRYFAILYPI-----SFQKYRT 208
Query: 422 TRCTILIVAAIWIFAILCAIPS 443
I++ WI +++ P+
Sbjct: 209 FNIGIILCIISWILSLIITSPA 230
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 55.7 bits (134), Expect = 3e-08
Identities = 37/157 (23%), Positives = 83/157 (52%), Gaps = 10/157 (6%)
Query: 293 DFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLV 352
DF+ + + Y V + + +F+ G++GN ++ + I + M V ++Y+ ++A+ DL++
Sbjct: 19 DFEMVNSDV-NYFVIVFYILLFIFGLIGNVLVIAVLIVKRFMFVV-DVYLFNIAMSDLML 76
Query: 353 ILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKL 412
+ + PF W +GE +CK+ + ++F +T +S DR+ +V+ +
Sbjct: 77 VFS-FPFI-IHNDLNEWIFGEFMCKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIK 134
Query: 413 HSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYV 449
+ I ++L+ A W+ +++ ++P+M L YV
Sbjct: 135 NKSIS------LSVLLSVAAWVCSVILSMPAMVLYYV 165
Score = 36.0 bits (83), Expect = 0.056
Identities = 60/237 (25%), Positives = 103/237 (43%), Gaps = 44/237 (18%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ +V+ + + I ++L+ A W+ +++ ++P+M L YV
Sbjct: 119 ISIDRYILVVNATKIKNKSIS------LSVLLSVAAWVCSVILSMPAMVLYYV------- 165
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYY---AVPLLIIACFYSLMARSLILSTK 117
+NT F + Y F I +PL+I+ YS + +L + K
Sbjct: 166 -DNTDNLKQCIF---NDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTL-KNCK 220
Query: 118 NMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDF--W 175
N + +TR I K+ TV+TF VVF + P F + +IN D +
Sbjct: 221 N-----KNKTRSI----KIILTVVTFTVVF---WVP---FNIVLFINSLQSVGLIDIGCY 265
Query: 176 HILRIV-----GFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNAN 227
H +IV + F++ C+NPI V F+K F K +FC+ ++ I + N
Sbjct: 266 HFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVF-KNMFCRTNNIFIRQSSNN 321
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 42.9 bits (101), Expect = 4e-04
Identities = 54/246 (21%), Positives = 98/246 (39%), Gaps = 37/246 (15%)
Query: 311 AFIFVVGVLGNGTLVLIFI------NHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVY 364
FI ++ + G L LI + N + P +Y+ +L L +LL + +PF
Sbjct: 36 TFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTVFV-LPFI---- 90
Query: 365 TFESWPY-GESI--CKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRA 421
+ S+ CK + S V T+ ++ADR+ I R A
Sbjct: 91 MLSNQGLLSGSVAGCKFASLLYYASCTVGFATVALIAADRYRVIHQRTRA------RSSA 144
Query: 422 TRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTV 481
R T I+ W +++C+ P+ + V A D +E+C + D T
Sbjct: 145 YRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYETCVIYFRADQVKTVLSTF 204
Query: 482 IIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVV 541
++ L++ P++++ FY+ R+L + + KK ++T LTFV
Sbjct: 205 KVLLTLVWGIAPVVMMTWFYTFFYRTL----------------KRASYKKRSRT-LTFVC 247
Query: 542 VFAMCF 547
+ + F
Sbjct: 248 ILLLSF 253
Score = 35.9 bits (83), Expect = 0.052
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 23/151 (15%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ADR+ I R A R T I+ W +++C+ P+ + V A D
Sbjct: 126 IAADRYRVIHQRTRA------RSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVD 179
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
+E+C + D T ++ L++ P++++ FY+ R+L
Sbjct: 180 PEAPGYETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTL-------- 231
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCF 151
+ + KK ++T LTFV + + F
Sbjct: 232 --------KRASYKKRSRT-LTFVCILLLSF 253
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 33.7 bits (78), Expect = 0.23
Identities = 43/216 (19%), Positives = 74/216 (34%), Gaps = 30/216 (13%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAI-WIFAILCAIPSMTLSYVRAFKDD 59
LS +R+ AI P+ +L K + + I W+ +L ++
Sbjct: 96 LSTNRYLAICFPISRLT-----KIWQSARLWKIILIYWLPGLLISLV------------- 137
Query: 60 TNNNTLFESCYPFPPIDGYP-NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKN 118
L + + + P + VI LI + + C Y ++A +
Sbjct: 138 ----VLKNTDIYYDNEENMPVVADKDVIQRFTLIALIF--VFVTCIYCIIAYGALFFVIR 191
Query: 119 MPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHIL 178
QT+ +++V F++V A F+ L Y + T D L
Sbjct: 192 KKFNKNSQTKSKSLKREVRLAFQVFILVLA-FLIILIFYILSNYFSQTQN---TDPIFYL 247
Query: 179 RIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFC 214
R + + S INP L + RK +K L C
Sbjct: 248 RALYPIASGLLSYINPYLLLIFNRDLRKQVRKMLKC 283
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 31.5 bits (72), Expect = 1.3
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 129 QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFI 188
Q + + + F+++ A+ F +L+ D N + L L +
Sbjct: 151 QSKRDRLENFIFILFLLLLALAV----FLYLFIRGW-----DPNSIFKALLR---ALIVL 198
Query: 189 NSCINPIALY 198
+ P AL
Sbjct: 199 VIVV-PPALP 207
>gnl|CDD|227771 COG5484, COG5484, Uncharacterized conserved protein [Function
unknown].
Length = 279
Score = 31.5 bits (71), Expect = 1.3
Identities = 18/101 (17%), Positives = 25/101 (24%), Gaps = 16/101 (15%)
Query: 220 IINSRNANARRFHRPSTYSS------TRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMAT 273
+I KWD M N M T RA +
Sbjct: 170 MIKELKGKKSVLSEYEEVEVEEAEGVFAKWDRMLLLENAQTRAMGTLARAIKQFSAIAYF 229
Query: 274 EITKITNGDQIIINTSL---------STDF-KPYSERLETY 304
E + +Q ++N T+F KP Y
Sbjct: 230 EDERWLKREQTLLNVESLMAIIEHWKGTEFDKPLEISHSAY 270
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 31.2 bits (71), Expect = 2.0
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 11/129 (8%)
Query: 480 TVIIMRFLIYYAVPLLIIACFY-SLMARSLILS---TKNMPGELQGQTRQIRARKKVAKT 535
++ + FL + LL I SL A +L + + M +G + RK +
Sbjct: 723 SLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRF 782
Query: 536 VLTFVVVFAMCFFPQHFFFLWFYI----NPTAPDDYNDFWHILRIMSSKIINSRNANARR 591
+L ++ A+ F FL + + N D + +I A R
Sbjct: 783 ILIIGLLSAILFI---LTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVR 839
Query: 592 FHRPSTYSS 600
SS
Sbjct: 840 SRGRPFLSS 848
Score = 31.2 bits (71), Expect = 2.2
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 84 TVIIMRFLIYYAVPLLIIACFY-SLMARSLILS---TKNMPGELQGQTRQIRARKKVAKT 139
++ + FL + LL I SL A +L + + M +G + RK +
Sbjct: 723 SLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRF 782
Query: 140 VLTFVVVFAMCFFPQHFFFLWFYI----NPTAPDDYNDFWHILRIVGFCLGFI 188
+L ++ A+ F FL + + N D + L +
Sbjct: 783 ILIIGLLSAILFI---LTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQL 832
>gnl|CDD|225196 COG2314, XynA, Predicted membrane protein [Function unknown].
Length = 95
Score = 28.5 bits (64), Expect = 3.3
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 6 FFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTL 65
A + + LH G+ L++ IF IL I + + F D + L
Sbjct: 15 LLAALFGIFGLHKFYLGQGGKGILTLLLNWTGIFLILLLIGYLGVLLGDEFYIDGIGDGL 74
Query: 66 F 66
Sbjct: 75 L 75
Score = 28.5 bits (64), Expect = 3.3
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 402 FFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTL 461
A + + LH G+ L++ IF IL I + + F D + L
Sbjct: 15 LLAALFGIFGLHKFYLGQGGKGILTLLLNWTGIFLILLLIGYLGVLLGDEFYIDGIGDGL 74
Query: 462 F 462
Sbjct: 75 L 75
>gnl|CDD|240421 PTZ00445, PTZ00445, p36-lilke protein; Provisional.
Length = 219
Score = 29.7 bits (67), Expect = 4.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 280 NGDQIIINTSLSTDFKPYSERLETYLVPIVFA 311
+ D I + TS++ DFK +RL+ + I
Sbjct: 66 DNDDIRVLTSVTPDFKILGKRLKNSNIKISVV 97
>gnl|CDD|222695 pfam14342, DUF4396, Domain of unknown function (DUF4396). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria, archaea
and eukaryotes. Proteins in this family are typically
between 167 and 310 amino acids in length.
Length = 139
Score = 28.0 bits (63), Expect = 7.9
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 16 LHSGIGGKRATRCTILIVAAIWIFAILCA----IPSMTLSYVRAF 56
LH G C I + +WI M L+ AF
Sbjct: 11 LHCLAG------CAIGDILGMWILTAYLLGWSMAGIMILAVALAF 49
Score = 28.0 bits (63), Expect = 7.9
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 10/45 (22%)
Query: 412 LHSGIGGKRATRCTILIVAAIWIFAILCA----IPSMTLSYVRAF 452
LH G C I + +WI M L+ AF
Sbjct: 11 LHCLAG------CAIGDILGMWILTAYLLGWSMAGIMILAVALAF 49
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 28.7 bits (65), Expect = 9.4
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 314 FVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGE 373
V+G+ GN ++++ K +R+ + I L DLL + + F V F
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIF--VVLLFTGTQLTR 58
Query: 374 SICKISESTKDISVGVSVFTLTALSADRFFAIVDPLR 410
+ C + + + DR A+ P+
Sbjct: 59 NECFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIF 95
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 28.7 bits (65), Expect = 9.6
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 12/134 (8%)
Query: 312 FIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTC----VPFTSTVYTFE 367
I + G++ N + IF+ S++N I + A+ + ++ VP T +F
Sbjct: 2 LISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSF- 60
Query: 368 SWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTIL 427
S +S T +S +RF A+ P + + I + T+ I
Sbjct: 61 LPELLNSHIGGLILL--GLYEISPLTHLLISLNRFCAVFFPFK--YKKIFSIKNTKIIIT 116
Query: 428 IVAAIWIFAILCAI 441
IWI AI+ +
Sbjct: 117 F---IWIIAIIIST 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.140 0.440
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,448,241
Number of extensions: 3304622
Number of successful extensions: 4849
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4810
Number of HSP's successfully gapped: 91
Length of query: 647
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 544
Effective length of database: 6,369,140
Effective search space: 3464812160
Effective search space used: 3464812160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (27.7 bits)