RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9472
(647 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 254 bits (650), Expect = 6e-79
Identities = 78/305 (25%), Positives = 131/305 (42%), Gaps = 25/305 (8%)
Query: 286 INTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSL 345
I+T+ S + + L + I V V+GN ++ I + HK MR V N ++++L
Sbjct: 15 ISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNL 74
Query: 346 ALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAI 405
A + + T W YG CK +V S++++TA++ DR+ AI
Sbjct: 75 AFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAI 134
Query: 406 VDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC 465
+ PL+ + + T +++ IW+ A+L A P S C
Sbjct: 135 IHPLQP-------RLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRV-------VC 180
Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGEL-QGQTR 524
P Y + I ++ Y +PLL+I Y+++ +L +PG+
Sbjct: 181 MIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLW--ASEIPGDSSDRYHE 238
Query: 525 QIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI------MS 578
Q+ A++KV K ++ V FA+C+ P H FFL YINP F + + MS
Sbjct: 239 QVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYL--KKFIQQVYLAIMWLAMS 296
Query: 579 SKIIN 583
S + N
Sbjct: 297 STMYN 301
Score = 186 bits (475), Expect = 1e-53
Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 19/252 (7%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
++ DR+ AI+ PL+ + + T +++ IW+ A+L A P S
Sbjct: 126 VAFDRYMAIIHPLQP-------RLSATATKVVICVIWVLALLLAFPQGYYSTTETMPSRV 178
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
C P Y + I ++ Y +PLL+I Y+++ +L +P
Sbjct: 179 -------VCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLW--ASEIP 229
Query: 121 GEL-QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILR 179
G+ Q+ A++KV K ++ V FA+C+ P H FFL YINP F +
Sbjct: 230 GDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYL--KKFIQQVY 287
Query: 180 IVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSS 239
+ L ++ NPI C++ FR F+ C + + T S
Sbjct: 288 LAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGS 347
Query: 240 TRKWDSMSTTHN 251
K + TT +
Sbjct: 348 VYKVSRLETTIS 359
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 222 bits (568), Expect = 4e-66
Identities = 74/288 (25%), Positives = 119/288 (41%), Gaps = 19/288 (6%)
Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLA 346
N + + + ++ + V G+LGN ++ + + H M+ NIYI +LA
Sbjct: 109 NAYIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLA 168
Query: 347 LGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIV 406
L D LV+L +PF T WP+G ++CK + ++ S FTLTA+S DR+ AI
Sbjct: 169 LADTLVLL-TLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTAMSVDRYVAIC 227
Query: 407 DPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY 466
P+R L R + + AIW A + +P + + ++ C
Sbjct: 228 HPIRALDV-----RTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEI-------ECL 275
Query: 467 PFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQI 526
P + I FL + VP+L+I+ YSLM R L L G +
Sbjct: 276 VEIP-TPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGV-----RLLSGSREKD 329
Query: 527 RARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHIL 574
R +++ + VL V VF C+ P F L + +
Sbjct: 330 RNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRF 377
Score = 151 bits (382), Expect = 5e-40
Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 21/235 (8%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ AI P+R L R + + AIW A + +P + + ++
Sbjct: 218 MSVDRYVAICHPIRALDV-----RTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEI 272
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
C P + I FL + VP+L+I+ YSLM R L
Sbjct: 273 -------ECLVEIP-TPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGV----- 319
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
L G + R +++ + VL V VF C+ P F L + ++ +
Sbjct: 320 RLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGV---QPSSETAVAILR 376
Query: 181 VGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPS 235
LG++NSC+NPI + F+ F+K+ + + H
Sbjct: 377 FCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALGRPLEVLFQGPHHHHHHH 431
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 163 bits (414), Expect = 4e-45
Identities = 45/269 (16%), Positives = 106/269 (39%), Gaps = 16/269 (5%)
Query: 296 PYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILT 355
+E + ++ + ++G N + + + HK +R N +L+LA+ DL ++
Sbjct: 31 YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 90
Query: 356 CVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSG 415
T + +G + C + + +++++L L+ +R+ + P+
Sbjct: 91 GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS----- 145
Query: 416 IGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYP 475
+ I+ VA W+ A+ CA P L + + SC
Sbjct: 146 -NFRFGENHAIMGVAFTWVMALACAAPP--LVGWSRYIPEGMQC----SCGIDYYTPHEE 198
Query: 476 NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT 535
+ +I F++++ +PL++I Y + ++ + Q +A K+V +
Sbjct: 199 TNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ----QESATTQKAEKEVTRM 254
Query: 536 VLTFVVVFAMCFFPQHFFFLWFYINPTAP 564
V+ V+ F +C+ P + + + +
Sbjct: 255 VIIMVIAFLICWLPYAGVAFYIFTHQGSD 283
Score = 97.5 bits (243), Expect = 3e-22
Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 23/220 (10%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
L+ +R+ + P+ + I+ VA W+ A+ CA P L + +
Sbjct: 132 LAIERYVVVCKPMS------NFRFGENHAIMGVAFTWVMALACAAPP--LVGWSRYIPEG 183
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
SC + +I F++++ +PL++I Y + ++ +
Sbjct: 184 MQC----SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ- 238
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
Q +A K+V + V+ V+ F +C+ P + + + + F I
Sbjct: 239 ---QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-----FGPIFMT 290
Query: 181 VGFCLGFINSCINPIALYCVSGT-FRKYFQKYLFCKMSSK 219
+ ++ NP+ +Y + FR L C +
Sbjct: 291 IPAFFAKTSAVYNPV-IYIMMNKQFRNCMVTTLCCGKNPL 329
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 158 bits (401), Expect = 2e-42
Identities = 54/275 (19%), Positives = 106/275 (38%), Gaps = 29/275 (10%)
Query: 288 TSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLAL 347
+ + + +++ + VVG+ GN ++ + + + M+ NIYI +LAL
Sbjct: 2 SHSLCPQTGSPSMVTAITIMALYSIVCVVGLFGNFLVMYVIVRYTKMKTATNIYIFNLAL 61
Query: 348 GDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVD 407
D L +PF S Y +WP+G +CKI S ++ S+FTL +S DR+ A+
Sbjct: 62 ADALATS-TLPFQSVNYLMGTWPFGNILCKIVISIDYYNMFTSIFTLCTMSVDRYIAVCH 120
Query: 408 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 467
P++ L R R ++ WI + +P M ++ + + C
Sbjct: 121 PVKALDF-----RTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSI-------DCTL 168
Query: 468 FPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIR 527
+ + + I F+ + +P+LII Y LM L + +R
Sbjct: 169 TFSHPTW-YWENLLKICVFIFAFIMPVLIITVCYGLMILRL---------------KSVR 212
Query: 528 ARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPT 562
++ + + + + + +
Sbjct: 213 NIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKS 247
Score = 69.6 bits (170), Expect = 9e-13
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
+ R +++ + VL V VF +C+ P H + + + + + L
Sbjct: 371 AYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQT---VSWHFCIAL 427
Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSS 218
G+ NSC+NP+ + F++ F+++ S+
Sbjct: 428 GYTNSCLNPVLYAFLDENFKRCFREFCIPTSST 460
Score = 67.7 bits (165), Expect = 4e-12
Identities = 43/355 (12%), Positives = 99/355 (27%), Gaps = 43/355 (12%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ A+ P++ L R R ++ WI + +P M ++ + +
Sbjct: 110 MSVDRYIAVCHPVKALDF-----RTPRNAKIVNVCNWILSSAIGLPVMFMATTKYRQGSI 164
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
C + + + I F+ + +P+LII Y LM L
Sbjct: 165 -------DCTLTFSHPTW-YWENLLKICVFIFAFIMPVLIITVCYGLMILRL-------- 208
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
+ +R ++ + + + + + + +
Sbjct: 209 -------KSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIGHLLTKSPSLNAAK------- 254
Query: 181 VGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSST 240
+ I F + + + + + + R + +
Sbjct: 255 SELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMV 314
Query: 241 RKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMA-------TEITKITNGDQIIINTSLSTD 293
+ N+L+M +R V +A T T + +
Sbjct: 315 FQMGETGVAGFTNSLRMLQQKR-WDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYE 373
Query: 294 FKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALG 348
R+ ++ +V FI + ++ I + +ALG
Sbjct: 374 KDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALG 428
Score = 34.2 bits (78), Expect = 0.14
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 522 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHIL 574
+ R +++ + VL V VF +C+ P H + + + +
Sbjct: 371 AYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHF 423
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 149 bits (378), Expect = 5e-39
Identities = 56/265 (21%), Positives = 106/265 (40%), Gaps = 17/265 (6%)
Query: 286 INTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSL 345
++ F+ + +P +++ IF+ G++GNG ++L+ K +R++ + Y L L
Sbjct: 31 YDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHL 90
Query: 346 ALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAI 405
++ DLL ++T +PF V +W +G +CK +++ SV+ L +S DR+ AI
Sbjct: 91 SVADLLFVIT-LPF-WAVDAVANWYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAI 148
Query: 406 VDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC 465
V R ++ +WI A+L IP + V D C
Sbjct: 149 VHATNSQRP-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRY-------IC 196
Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQ 525
F P + ++ +P ++I Y ++ L S N+ L+
Sbjct: 197 DRFYP---NDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGL 253
Query: 526 IRARKKVAKTVLTFVVVFAMCFFPQ 550
K + T + + P
Sbjct: 254 RLKIYKDTEGYYTIGIGHLLTKSPS 278
Score = 65.3 bits (159), Expect = 3e-11
Identities = 27/205 (13%), Positives = 55/205 (26%), Gaps = 40/205 (19%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 60
+S DR+ AIV R ++ +WI A+L IP + V D
Sbjct: 140 ISLDRYLAIVHATNSQRP-----RKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRY 194
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
C F P + ++ +P ++I Y ++ L S N
Sbjct: 195 -------ICDRFYP---NDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSN-- 242
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRI 180
++ + + + + + + P + +
Sbjct: 243 ------------IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKS-PSLNAAKSELDKA 289
Query: 181 VGF----------CLGFINSCINPI 195
+G N ++
Sbjct: 290 IGRNTNGVITKDEAEKLFNQDVDAA 314
Score = 54.5 bits (131), Expect = 6e-08
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 8/106 (7%)
Query: 121 GELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLW-----FYINPTAPDDYNDFW 175
G + ++K KT + ++ F C+ P + I + N
Sbjct: 396 GTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTV- 454
Query: 176 HILRIVGFCLGFINSCINPIALYC-VSGTFRKYFQKYLFCKMSSKI 220
H + L F + C+NPI LY + F+ Q L ++
Sbjct: 455 HKWISITEALAFFHCCLNPI-LYAFLGAKFKTSAQHALTSGRPLEV 499
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 138 bits (348), Expect = 2e-35
Identities = 57/278 (20%), Positives = 108/278 (38%), Gaps = 32/278 (11%)
Query: 304 YLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLV-ILTCVPFTST 362
Y + I ++G GNG ++ +F KS++ N++I++LA D ++ P +
Sbjct: 35 YSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTI 94
Query: 363 VYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRAT 422
+ W +G + CK+ I +S+ T+ +S DR+ I P+ K+ +
Sbjct: 95 SCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMA------ASKKMS 148
Query: 423 -RCTILIVAAIWIFAILCAIPSMTL--SYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPR 479
R +++ +W++++L AI + +Y +C D
Sbjct: 149 HRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE-----GVLC---NCS----FDYISRDST 196
Query: 480 TV--IIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG--------ELQGQTRQIRAR 529
T I+ F++ + P+LII Y + S+ K M EL+ A
Sbjct: 197 TRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAE 256
Query: 530 KKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY 567
++AK + V F + + P L P
Sbjct: 257 MRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTP 294
Score = 88.1 bits (218), Expect = 1e-18
Identities = 47/285 (16%), Positives = 92/285 (32%), Gaps = 41/285 (14%)
Query: 1 LSADRFFAIVDPLRKLHSGIGGKRAT-RCTILIVAAIWIFAILCAIPSMTL--SYVRAFK 57
+S DR+ I P+ K+ + R +++ +W++++L AI + +Y
Sbjct: 129 ISIDRYNVIGRPMA------ASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE-- 180
Query: 58 DDTNNNTLFESCYPFPPIDGYPNYPRTV--IIMRFLIYYAVPLLIIACFYSLMARSLILS 115
+C D T I+ F++ + P+LII Y + S+
Sbjct: 181 ---GVLC---NCS----FDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNH 230
Query: 116 TKNMPG--------ELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 167
K M EL+ A ++AK + V F + + P L P
Sbjct: 231 EKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLE 290
Query: 168 PDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGT-FRKYFQKYLFCKMS---SKIINS 223
+ ++ NP+ +Y VS FR+ + ++ +
Sbjct: 291 WVTP-----YAAQLPVMFAKASAIHNPM-IYSVSHPKFREAISQTFPWVLTCCQFDDKET 344
Query: 224 RNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFRRAPQNDP 268
+ P+ SS + + M ++ P
Sbjct: 345 EDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYP 389
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 106 bits (266), Expect = 2e-25
Identities = 59/261 (22%), Positives = 111/261 (42%), Gaps = 19/261 (7%)
Query: 308 IVFAFIFVVGVLGNGTLVLIFINH-KSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTF 366
++ A + ++ V GN LV+ I + ++ + N++I SLA DL+V L VPF +T+
Sbjct: 16 LLMALVVLLIVAGN-VLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVR 74
Query: 367 ESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTI 426
+W +G +C++ S + V S+ TL ++ DR+ AI P R
Sbjct: 75 GTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFR-----YQSLMTRARAK 129
Query: 427 LIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRF 486
+I+ +W + L + + + ++D+ Y I
Sbjct: 130 VIICTVWAISALVSFLPI---MMHWWRDEDPQALKCYQDPGCCDFVTNRAY----AIASS 182
Query: 487 LIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARK--KVAKTVLTFVVVFA 544
+I + +PLLI+ + R + + + +T ++ + K KT+ + VF
Sbjct: 183 IISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFT 242
Query: 545 MCFFPQHFFFLWFYINPTAPD 565
+C+ P FFL +N D
Sbjct: 243 LCWLP---FFLVNIVNVFNRD 260
Score = 78.6 bits (194), Expect = 4e-16
Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 21/216 (9%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
+ DR+ AI P R +I+ +W + L + + + ++D+
Sbjct: 106 AIDRYLAITSPFR-----YQSLMTRARAKVIICTVWAISALVSFLPI---MMHWWRDEDP 157
Query: 62 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG 121
Y I +I + +PLLI+ + R + +
Sbjct: 158 QALKCYQDPGCCDFVTNRAY----AIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDR 213
Query: 122 ELQGQTRQIRARK--KVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILR 179
+ +T ++ + K KT+ + VF +C+ P FFL +N D D L
Sbjct: 214 ASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLP---FFLVNIVNVFNRDLVPD---WLF 267
Query: 180 IVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCK 215
+ LG+ NS +NPI +YC S FRK F++ L
Sbjct: 268 VAFNWLGYANSAMNPI-IYCRSPDFRKAFKRLLAFP 302
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 105 bits (262), Expect = 3e-24
Identities = 60/373 (16%), Positives = 115/373 (30%), Gaps = 16/373 (4%)
Query: 271 MATEITKITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFIN 330
M T I + + D P + + + V I V+ +LGN +
Sbjct: 1 MKTIIALSYIFCLVFADYKDDDDGAPPI--MGSSVYITVELAIAVLAILGNVLVCWAVWL 58
Query: 331 HKSMRNVPNIYILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVS 390
+ +++NV N +++SLA D+ V + +PF T+ + C + S
Sbjct: 59 NSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--TGFCAACHGCLFIACFVLVLTQSS 116
Query: 391 VFTLTALSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVR 450
+F+L A++ DR+ AI PLR G I+A W+ + + M
Sbjct: 117 IFSLLAIAIDRYIAIRIPLR-----YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNC 171
Query: 451 AFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS---LMARS 507
+ N++ + ++ F VPLL++ Y L AR
Sbjct: 172 GQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARR 231
Query: 508 LILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDY 567
+ ++ L + I A+
Sbjct: 232 QLADLEDNWETLNDNLKVIEKADNAAQVKDA----LTKMRAAALDAQKATPPKLEDKSPD 287
Query: 568 NDFWHILRIMSSKIINSRNANARRFHRPSTYSSTRKWDSVSTTHNPNNLQMNTFRRAPQN 627
+ R ++ + + + + + + TT N + R+
Sbjct: 288 SPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQ 347
Query: 628 DPVTMATEITKIT 640
V A + I
Sbjct: 348 KEVHAAKSLAIIV 360
Score = 54.3 bits (130), Expect = 7e-08
Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 7/130 (5%)
Query: 108 MARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTA 167
+ + L+ ++ AK++ V +FA+C+ P +
Sbjct: 324 AEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLP---LHIINCFTFFC 380
Query: 168 PDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNAN 227
PD + ++ + L NS +NP FR+ F+K + + +
Sbjct: 381 PDCSHAPLWLMYLA-IVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ---QEPFK 436
Query: 228 ARRFHRPSTY 237
A H +
Sbjct: 437 AHHHHHHHHH 446
Score = 46.2 bits (109), Expect = 2e-05
Identities = 25/141 (17%), Positives = 44/141 (31%), Gaps = 8/141 (5%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
+ DR+ AI PLR G I+A W+ + + M +
Sbjct: 124 AIDRYIAIRIPLR-----YNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 178
Query: 62 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYS---LMARSLILSTKN 118
N++ + ++ F VPLL++ Y L AR + ++
Sbjct: 179 NHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLED 238
Query: 119 MPGELQGQTRQIRARKKVAKT 139
L + I A+
Sbjct: 239 NWETLNDNLKVIEKADNAAQV 259
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 103 bits (258), Expect = 2e-23
Identities = 65/303 (21%), Positives = 112/303 (36%), Gaps = 35/303 (11%)
Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINH-KSMRNVPNIYILSL 345
T ++ + + IV + I + V GN LV+ I + ++ V N +I SL
Sbjct: 166 TFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGN-VLVITAIAKFERLQTVTNYFITSL 224
Query: 346 ALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAI 405
A DL++ L VPF + ++W +G C+ S + V S+ TL ++ DR+FAI
Sbjct: 225 ACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAI 284
Query: 406 VDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESC 465
P + +I+ +WI + L + + + + RA + N E+C
Sbjct: 285 TSPFK-----YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETC 339
Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM-------ARSLILSTKNMPGE 518
F Y I + +Y VPL+I+ YS + + + S +
Sbjct: 340 CDFFTNQAY------AIASSIVSFY-VPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQ 392
Query: 519 LQGQTRQIRA--------------RKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAP 564
Q Q K KT+ + F +C+ P + I
Sbjct: 393 NLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLI 452
Query: 565 DDY 567
Sbjct: 453 RKE 455
Score = 73.8 bits (181), Expect = 6e-14
Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 43/259 (16%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
+ DR+FAI P + +I+ +WI + L + + + + RA +
Sbjct: 277 AVDRYFAITSPFK-----YQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAI 331
Query: 62 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLM-------ARSLIL 114
N E+C F Y I + +Y VPL+I+ YS + + +
Sbjct: 332 NCYAEETCCDFFTNQAY------AIASSIVSFY-VPLVIMVFVYSRVFQEAKRQLQKIDK 384
Query: 115 STKNMPGELQGQTRQIRA--------------RKKVAKTVLTFVVVFAMCFFPQHFFFLW 160
S + Q Q K KT+ + F +C+ P FF+
Sbjct: 385 SEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLP---FFIV 441
Query: 161 FYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKI 220
++ + + I+ +G++NS NP+ +YC S FR FQ+ L + SS
Sbjct: 442 NIVHVIQDNLIRK---EVYILLNWIGYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSSL- 496
Query: 221 INSRNANARRFHRPSTYSS 239
N + + S
Sbjct: 497 --KAYGNGYSSNGNTGEQS 513
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 102 bits (256), Expect = 2e-23
Identities = 43/247 (17%), Positives = 85/247 (34%), Gaps = 11/247 (4%)
Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLA 346
+ P + + + V I V+ +LGN + + +++NV N +++SLA
Sbjct: 7 DAMGQPVGAPPI--MGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLA 64
Query: 347 LGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIV 406
D+ V + +PF + + C + S+F+L A++ DR+ AI
Sbjct: 65 AADIAVGVLAIPF--AITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIR 122
Query: 407 DPLRKLHSGIGGKRATRCTILIVAAIWIFAIL-CAIPSMTLSYVRAFKDDTNNNTLFESC 465
PLR I+A W+ + P + + K+ N++
Sbjct: 123 IPLRYNG-----LVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGCGEG 177
Query: 466 YPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQ 525
+ V F VPLL++ Y + + + +
Sbjct: 178 QVACLFEDVVPMNYMVYFNFFACVL-VPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLR 236
Query: 526 IRARKKV 532
++ K
Sbjct: 237 LKIYKDT 243
Score = 63.6 bits (154), Expect = 1e-10
Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 110 RSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD 169
R+ + T G ++ AK++ V +FA+C+ P + PD
Sbjct: 367 RAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLP---LHIINCFTFFCPD 423
Query: 170 DYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANAR 229
+ ++ + L NS +NP FR+ F+K + + + A
Sbjct: 424 CSHAPLWLMYLA-IVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ---QEPFKAH 479
Query: 230 RFHRPST 236
H
Sbjct: 480 HHHHHHH 486
Score = 43.2 bits (101), Expect = 2e-04
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 7/136 (5%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAIL-CAIPSMTLSYVRAFKDDT 60
+ DR+ AI PLR I+A W+ + P + + K+
Sbjct: 114 AIDRYIAIRIPLRYNG-----LVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGK 168
Query: 61 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 120
N++ + V F VPLL++ Y + +
Sbjct: 169 NHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVL-VPLLLMLGVYLRIFLAARRQLNIFE 227
Query: 121 GELQGQTRQIRARKKV 136
+ +++ K
Sbjct: 228 MLRIDEGLRLKIYKDT 243
Score = 32.8 bits (74), Expect = 0.33
Identities = 12/69 (17%), Positives = 25/69 (36%)
Query: 506 RSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPD 565
R+ + T G ++ AK++ V +FA+C+ P H + + P
Sbjct: 367 RAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH 426
Query: 566 DYNDFWHIL 574
++
Sbjct: 427 APLWLMYLA 435
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 100 bits (251), Expect = 1e-22
Identities = 58/247 (23%), Positives = 103/247 (41%), Gaps = 16/247 (6%)
Query: 287 NTSLSTDFKPYSERLETYLVPI--VFAFIFVVGVLGNGTLVLI-FINHKSMRNVPNIYIL 343
N S + D +R E ++V + V + I + V GN LV+ + ++ V N +I
Sbjct: 22 NRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGN-VLVITAIAKFERLQTVTNYFIT 80
Query: 344 SLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFF 403
SLA DL++ L VPF + + W +G C+ S + V S+ TL ++ DR+F
Sbjct: 81 SLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYF 140
Query: 404 AIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFE 463
AI P + +I+ +WI + L + + + + RA + N E
Sbjct: 141 AITSPFKYQS-----LLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 195
Query: 464 SCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT 523
+C F Y I ++ + VPL+I+ YS + + +
Sbjct: 196 TCCDFFTNQAY-------AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEG 248
Query: 524 RQIRARK 530
+++ K
Sbjct: 249 LRLKIYK 255
Score = 63.6 bits (154), Expect = 9e-11
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 10/114 (8%)
Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
+ K KT+ + F +C+ P FF+ ++ + + I+ +
Sbjct: 396 AYKFCLKEHKALKTLGIIMGTFTLCWLP---FFIVNIVHVIQDNLIRK---EVYILLNWI 449
Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSS 239
G++NS NP+ +YC S FR FQ+ L + SS N + + S
Sbjct: 450 GYVNSGFNPL-IYCRSPDFRIAFQELLCLRRSSL---KAYGNGYSSNGNTGEQS 499
Score = 42.8 bits (100), Expect = 3e-04
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 12/133 (9%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
+ DR+FAI P + +I+ +WI + L + + + + RA +
Sbjct: 135 AVDRYFAITSPFKYQS-----LLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAI 189
Query: 62 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG 121
N E+C F Y I ++ + VPL+I+ YS + +
Sbjct: 190 NCYAEETCCDFFTNQAY-------AIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEM 242
Query: 122 ELQGQTRQIRARK 134
+ +++ K
Sbjct: 243 LRIDEGLRLKIYK 255
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 97.5 bits (242), Expect = 1e-21
Identities = 46/251 (18%), Positives = 99/251 (39%), Gaps = 17/251 (6%)
Query: 282 DQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLI-FINHKSMRNVPNI 340
D ++ S + E + +V + +V ++GN LV++ ++ ++ V N
Sbjct: 2 DDSTDSSDNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGN-ILVMVSIKVNRHLQTVNNY 60
Query: 341 YILSLALGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSAD 400
++ SLA DL++ + + + WP G +C + + + SV L +S D
Sbjct: 61 FLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFD 120
Query: 401 RFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNT 460
R+F + PL KR T+ +++AA W+ + + P++ +
Sbjct: 121 RYFCVTKPLTYPV-----KRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGE 175
Query: 461 LFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQ 520
CY I + N V + + +P++I+ Y ++R+
Sbjct: 176 ----CY----IQFFSN--AAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRI 225
Query: 521 GQTRQIRARKK 531
+ +++ K
Sbjct: 226 DEGLRLKIYKD 236
Score = 57.0 bits (137), Expect = 1e-08
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 124 QGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGF 183
KKV +T+L ++ F + + P + + IN + +G+
Sbjct: 374 WDAYPPPSREKKVTRTILAILLAFIITWAP---YNVMVLINTFCAPCIPNTVWT---IGY 427
Query: 184 CLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARR 230
L +INS INP + TF+K F+ L C +N A R
Sbjct: 428 WLCYINSTINPACYALCNATFKKTFKHLLMCH-------YKNIGATR 467
Score = 36.2 bits (83), Expect = 0.033
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 15/134 (11%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
S DR+F + PL KR T+ +++AA W+ + + P++
Sbjct: 118 SFDRYFCVTKPLTYPV-----KRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVE 172
Query: 62 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG 121
+ CY I + N V + + +P++I+ Y ++R+
Sbjct: 173 DGE----CY----IQFFSN--AAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEM 222
Query: 122 ELQGQTRQIRARKK 135
+ +++ K
Sbjct: 223 LRIDEGLRLKIYKD 236
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 96.3 bits (239), Expect = 2e-21
Identities = 43/235 (18%), Positives = 88/235 (37%), Gaps = 17/235 (7%)
Query: 302 ETYLVPIVFAFIFVVGVLGNGTLVLI-FINHKSMRNVPNIYILSLALGDLLVILTCVPFT 360
+ + +V + I +V V N LVL + + + V N+YI+SL++ DL+V +P
Sbjct: 7 QLMPLVVVLSTICLVTVGLN-LLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMN 65
Query: 361 STVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSGIGGKR 420
W G +C S ++ S+F++ L DR+ ++ PLR L R
Sbjct: 66 ILYLLMSKWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLK-----YR 120
Query: 421 ATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRT 480
+ W + L IP + + ++ +
Sbjct: 121 TKTRASATILGAWFLSFLWVIPIL------GWNHFMQQTSVRREDKCETDFYDVTWF--- 171
Query: 481 VIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT 535
+M +I + +P L++ FY+ + +++ + +++ K
Sbjct: 172 -KVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGY 225
Score = 58.2 bits (140), Expect = 4e-09
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
+ +K AK + + F +C+ P +F++F + + N+ H+ L
Sbjct: 361 AYLHMNRERKAAKQLGFIMAAFILCWIP---YFIFFMVIAFCKNCCNEHLHM---FTIWL 414
Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKI 220
G+INS +NP+ + F+K F++ L + +
Sbjct: 415 GYINSTLNPLIYPLCNENFKKTFKRILHIRSGENL 449
Score = 38.5 bits (89), Expect = 0.006
Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 15/138 (10%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
DR+ ++ PLR L R + W + L IP + +
Sbjct: 103 CIDRYRSVQQPLRYLK-----YRTKTRASATILGAWFLSFLWVIPIL------GWNHFMQ 151
Query: 62 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG 121
++ + +M +I + +P L++ FY+ + +++
Sbjct: 152 QTSVRREDKCETDFYDVTWF----KVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEM 207
Query: 122 ELQGQTRQIRARKKVAKT 139
+ +++ K
Sbjct: 208 LRIDEGLRLKIYKDTEGY 225
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 94.6 bits (234), Expect = 1e-20
Identities = 39/250 (15%), Positives = 87/250 (34%), Gaps = 22/250 (8%)
Query: 287 NTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLA 346
N + + E L +VF I +L N ++L K +I +LA
Sbjct: 48 NYTGKLNISADKE-NSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLA 106
Query: 347 LGDLLVILTCVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIV 406
L DLL + + ++ + + E + +++ SVF+L A++ +R+ ++
Sbjct: 107 LSDLLAGVAYTANL-LLSGATTYKLTPAQWFLREGSMFVALSASVFSLLAIAIERYITML 165
Query: 407 DPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCY 466
L+++A W+ +++ + N + SC
Sbjct: 166 KMKLH------NGSNNFRLFLLISACWVISLILGGLPIM---------GWNCISALSSCS 210
Query: 467 PFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQI 526
P Y + I+ ++ + L I+ + + + + M +G +I
Sbjct: 211 TV-----LPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKI 265
Query: 527 RARKKVAKTV 536
+ T+
Sbjct: 266 YKDTEGYYTI 275
Score = 52.2 bits (124), Expect = 4e-07
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 7/130 (5%)
Query: 106 SLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINP 165
R+ + T G + + KTV+ + VF C+ P F+ ++
Sbjct: 389 QTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAP---LFILLLLDV 445
Query: 166 TAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRN 225
D L +NS NPI + R+ F + + + +
Sbjct: 446 GCKVKTCD-ILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVLF---QG 501
Query: 226 ANARRFHRPS 235
+ H
Sbjct: 502 PHHHHHHHHH 511
Score = 32.9 bits (74), Expect = 0.34
Identities = 19/139 (13%), Positives = 46/139 (33%), Gaps = 20/139 (14%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
+ +R+ ++ G R +LI +A W+ +++ + N
Sbjct: 157 AIERYITMLKMKLH-----NGSNNFRLFLLI-SACWVISLILGGLPIM---------GWN 201
Query: 62 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG 121
+ SC P Y + I+ ++ + L I+ + + + + M
Sbjct: 202 CISALSSCSTV-----LPLYHKHYILFCTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLR 256
Query: 122 ELQGQTRQIRARKKVAKTV 140
+G +I + T+
Sbjct: 257 IDEGLRLKIYKDTEGYYTI 275
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 94.4 bits (234), Expect = 1e-20
Identities = 42/253 (16%), Positives = 98/253 (38%), Gaps = 21/253 (8%)
Query: 278 ITNGDQIIINTSLSTDFKPYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNV 337
++ + T + + S+ + + + + V GNG + + + ++++
Sbjct: 13 LSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTT 72
Query: 338 PNIYILSLALGDLLVILTCVPFTSTVY-TFESWPYGESICKISESTKDISVGVSVFTLTA 396
N ++SLA+ DLLV +P+ + T W + C + + + S++ L A
Sbjct: 73 TNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCA 132
Query: 397 LSADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDT 456
+S DR+ A+V P+ + G+ + R L++ A+W+ A + P +
Sbjct: 133 ISIDRYTAVVMPVH--YQHGTGQSSCRRVALMITAVWVLAFAVSCPLL------------ 178
Query: 457 NNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMP 516
+ P + N +I ++ + +P + Y+ + L +
Sbjct: 179 ----FGFNTTGDPTVCSISN--PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNI 232
Query: 517 GELQGQTRQIRAR 529
E+ +R +
Sbjct: 233 FEMLRIDEGLRLK 245
Score = 54.0 bits (129), Expect = 8e-08
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
KK + V + F +C+ P FFL +N + L L
Sbjct: 389 AYGVPLREKKATQMVAIVLGAFIVCWLP---FFLTHVLNTHCQTCHVSPE--LYSATTWL 443
Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCK 215
G++NS +NP+ + FRK F K L C
Sbjct: 444 GYVNSALNPVIYTTFNIEFRKAFLKILSCG 473
Score = 39.0 bits (90), Expect = 0.004
Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 20/132 (15%)
Query: 2 SADRFFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTN 61
S DR+ A+V P+ + G+ + R L++ A+W+ A + P +
Sbjct: 134 SIDRYTAVVMPVH--YQHGTGQSSCRRVALMITAVWVLAFAVSCPLL------------- 178
Query: 62 NNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPG 121
+ P + N +I ++ + +P + Y+ + L +
Sbjct: 179 ---FGFNTTGDPTVCSISN--PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIF 233
Query: 122 ELQGQTRQIRAR 133
E+ +R +
Sbjct: 234 EMLRIDEGLRLK 245
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 2e-11
Identities = 85/550 (15%), Positives = 154/550 (28%), Gaps = 165/550 (30%)
Query: 204 FRKYFQKYLFCK---------MSSK----IINSRNA--NARR-FHRPSTYSSTRKWDSMS 247
F F CK +S + II S++A R F + +
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 248 TTHNPN-NLQMNTFR---RAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYS-ERLE 302
N M+ + R P + ++ N +Q+ F Y+ RL+
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---------FAKYNVSRLQ 135
Query: 303 TY---------LVPIVFAFIFVVGVLGNG--TLVL-IFINHKSMRNVPN-IYILSLA--- 346
Y L P + + GVLG+G + L + +++K + I+ L+L
Sbjct: 136 PYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 347 --------LGDLLVILTCVPFTSTV------------------YTFESWPYGESI----- 375
L LL + +TS +S PY +
Sbjct: 194 SPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 376 -------------CKISESTKDISV--GVSVFTLTALSADRFFAIVDP-------LRKLH 413
CKI +T+ V +S T T +S D + P L+ L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 414 SGIGGKRATRCTI--LIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNT----------- 460
T ++ I A T + D
Sbjct: 313 CRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 461 ----LFESCYPFP---PIDGYPNYPRTVIIM--RFLIYYAVPLLIIACF-YSLMARSLIL 510
+F+ FP I P ++ + +I V +++ YSL+ +
Sbjct: 370 EYRKMFDRLSVFPPSAHI------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 511 STKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDF 570
ST ++P ++ + ++++ F P D Y +
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYN-IPKTFDSDDLI-------PPYLDQYF-Y 474
Query: 571 WHI----------------------LRIMSSKIINSRNANARRFHRPSTYSSTRKWDSVS 608
HI R + KI + A +T + +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534
Query: 609 TTHNPNNLQM 618
++P ++
Sbjct: 535 CDNDPKYERL 544
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-07
Identities = 108/672 (16%), Positives = 183/672 (27%), Gaps = 251/672 (37%)
Query: 12 PLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYP 71
PL L G + +L+ A + A L ++ F P
Sbjct: 8 PLT-LSHG-----SLEHVLLVPTASFFIA-------SQL------QEQ------FNKILP 42
Query: 72 FPPIDGY--PNYPRTVI--IMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQT 127
P +G+ + P T + +FL Y +S+ P + GQ
Sbjct: 43 -EPTEGFAADDEPTTPAELVGKFLGY--------------------VSSLVEPSK-VGQF 80
Query: 128 RQIRARKKVAKTVLTFVVVFAMCFFPQHFF--FLWFYINPTAPDDYNDFWHILRIVGFCL 185
Q V L F +L ND H L L
Sbjct: 81 DQ------VLNLCL------------TEFENCYLEG----------NDI-HAL--AAKLL 109
Query: 186 GFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSSTRKWDS 245
N L + Y +R R F + S
Sbjct: 110 Q-----ENDTTLVKTKELIKNYIT-------------ARIMAKRPFDKKS---------- 141
Query: 246 MSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIINTSLSTDFKPYSERL---- 301
+ L FR + + +A I G Q + Y E L
Sbjct: 142 ------NSAL----FRAVGEGNAQLVA-----IFGG-QGNTDD--------YFEELRDLY 177
Query: 302 ETYLVPIVFAFIFVVG-VLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLV-------- 352
+TY +V I L L+ ++ + ++ L + + L
Sbjct: 178 QTY-HVLVGDLIKFSAETLSE--LI------RTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 353 -ILTCVPFTSTVYTFESWP---------YGESICKISEST----KDISVGVSVFT---LT 395
L +P S P Y K+ T + G + + +T
Sbjct: 229 DYLLSIPI--------SCPLIGVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 396 AL------SADRFFAIVDP-LRKL-HSGIGGKRATRCTIL---IVAAIWIFAILCAIPS- 443
A+ S + FF V + L G+ A T L I+ +PS
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--ENNEGVPSP 337
Query: 444 MTLSYVRAFKDDTNNNTLFESCYPFPP--------IDGYPNYPRTVIIMRFLIYYAVPLL 495
M LS + + + + ++ P ++G + +++ + P
Sbjct: 338 M-LS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG----AKNLVV-------SGPPQ 384
Query: 496 IIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFL 555
SL +L L P L Q+R I ++ K F+ V + P H L
Sbjct: 385 ------SLYGLNLTLRKAKAPSGLD-QSR-IPFSERKLKFSNRFLPVAS----PFHSHLL 432
Query: 556 WFYINPTAPDDYNDFW-HILRIMSS--KI--INSRNANARRFHRPSTYSS-----TRK-- 603
P + D + + + +I ++ + + R S R
Sbjct: 433 ----VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 604 -WDSV---STTH 611
W++ TH
Sbjct: 489 KWETTTQFKATH 500
Score = 43.9 bits (103), Expect = 2e-04
Identities = 59/408 (14%), Positives = 119/408 (29%), Gaps = 147/408 (36%)
Query: 74 PIDGYPNYPRTVIIMR------------FLIYYAV--PL--LIIACFYSLMARSLILSTK 117
+D + + + I+ +L+ + PL +I Y + A+ L +
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 118 NMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHI 177
+ L+G T ++ ++T V A + +
Sbjct: 262 ELRSYLKGAT-------GHSQGLVT-AVAIAET--------------DSWESFFVSVRKA 299
Query: 178 LRIVGFCLG------FINSCINPIALY--------------CVSGTFRKYFQKYLFCKMS 217
+ ++ F +G + N+ + P L +S ++ Q Y
Sbjct: 300 ITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY------ 352
Query: 218 SKIINSRNANARRFHRPSTYSSTRKWDSMSTTHNPNNL-------QMNTFRRAPQNDPVT 270
+N N+ H P+ K +S + NL + +
Sbjct: 353 ---VNKTNS-----HLPA-----GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 271 MATEITKITNGDQIIINTSLSTDFKPYSER--------LET-------YLVPIVFAFIFV 315
+ ++I P+SER L LVP A +
Sbjct: 400 SGLDQSRI-----------------PFSERKLKFSNRFLPVASPFHSHLLVP---ASDLI 439
Query: 316 VGVLGNGTLVLIFINHKSMRNVP--------NIYILSLALGDLLV--ILT-CVPFTSTVY 364
L + N K ++ +P ++ +LS ++ + +V I+ V + +T
Sbjct: 440 NKDLVKNN---VSFNAKDIQ-IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 365 TFESW-----PYGESICKISESTKDISVG-----VSVFTLTALSADRF 402
+ P G S + T G + TL D +
Sbjct: 496 FKATHILDFGPGGAS--GLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 26.6 bits (59), Expect = 2.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 390 SVFTLTALSADRFFAIVDPLR 410
S+ L A+S DR+++I +
Sbjct: 3 SIVHLCAISLDRYWSITQAIE 23
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 29.1 bits (66), Expect = 6.4
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 24/62 (38%)
Query: 298 SERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILTCV 357
+ +L +VP+ IF VL+++ + + L+I++ V
Sbjct: 876 NHKL-KLMVPMTLMIIF----------VLLYLAFRRVGEA-------------LLIISSV 911
Query: 358 PF 359
PF
Sbjct: 912 PF 913
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.140 0.440
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,970,694
Number of extensions: 598726
Number of successful extensions: 1375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1285
Number of HSP's successfully gapped: 54
Length of query: 647
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 547
Effective length of database: 3,909,693
Effective search space: 2138602071
Effective search space used: 2138602071
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.3 bits)