RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9472
(647 letters)
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 89.3 bits (220), Expect = 7e-20
Identities = 42/266 (15%), Positives = 101/266 (37%), Gaps = 16/266 (6%)
Query: 296 PYSERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLLVILT 355
+E + ++ + ++G N + + + HK +R N +L+LA+ DL ++
Sbjct: 30 YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89
Query: 356 CVPFTSTVYTFESWPYGESICKISESTKDISVGVSVFTLTALSADRFFAIVDPLRKLHSG 415
T + +G + C + + +++++L L+ +R+ + P+ G
Sbjct: 90 GFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFG 149
Query: 416 IGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYP 475
W+ A+ CA P + + + C
Sbjct: 150 ENHAIMGVA------FTWVMALACAAPPLVGWSRYIPEGMQCS------CGIDYYTPHEE 197
Query: 476 NYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKT 535
+ +I F++++ +PL++I Y + + + K + Q +A K+V +
Sbjct: 198 TNNESFVIYMFVVHFIIPLIVIFFCYGQL----VFTVKEAAAQQQESATTQKAEKEVTRM 253
Query: 536 VLTFVVVFAMCFFPQHFFFLWFYINP 561
V+ V+ F +C+ P + + +
Sbjct: 254 VIIMVIAFLICWLPYAGVAFYIFTHQ 279
Score = 62.7 bits (151), Expect = 3e-11
Identities = 28/194 (14%), Positives = 65/194 (33%), Gaps = 9/194 (4%)
Query: 37 WIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYAV 96
A + + + SC + +I F++++ +
Sbjct: 155 MGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFII 214
Query: 97 PLLIIACFYSLMARSLILSTKNMPGELQGQTRQIRARKKVAKTVLTFVVVFAMCFFPQHF 156
PL++I Y + + + K + Q +A K+V + V+ V+ F +C+ P
Sbjct: 215 PLIVIFFCYGQL----VFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAG 270
Query: 157 FFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKM 216
+ + + +DF I + ++ NP+ ++ FR L C
Sbjct: 271 VAFYIFTHQG-----SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGK 325
Query: 217 SSKIINSRNANARR 230
+ + + +
Sbjct: 326 NPLGDDEASTTVSK 339
>d1nz8a_ d.58.42.1 (A:) N-utilization substance G protein NusG,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 119
Score = 29.2 bits (65), Expect = 0.67
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 146 VFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIAL 197
V FP + F ++ ++ N+ W ++R GF+ + + P+ L
Sbjct: 55 VVRKKLFPGYLFI---QMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPL 103
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 29.4 bits (65), Expect = 0.97
Identities = 30/174 (17%), Positives = 55/174 (31%), Gaps = 18/174 (10%)
Query: 179 RIVGFCLGFINSCINPIALYCVSGTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYS 238
+ G CL CI AL S + + + + + A + +
Sbjct: 37 ALGGTCL--NVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSN 94
Query: 239 STRKWDSMSTTHNPNNLQMNTFRRAPQNDPVTMATEITKITNGDQIIINT-SLSTDFKPY 297
TR + + + ++ +P V + G III T S P+
Sbjct: 95 LTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPF 154
Query: 298 SERLETYLVPIVFAFIFVVGVLGNGTLVLIFINHKSMRNVPNIYILSLALGDLL 351
+ L + + G I +N + NV +Y A+GD++
Sbjct: 155 TSGLNLDKIGVETD--------KLGR---ILVNERFSTNVSGVY----AIGDVI 193
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 405
Score = 29.7 bits (66), Expect = 1.1
Identities = 23/206 (11%), Positives = 57/206 (27%), Gaps = 3/206 (1%)
Query: 6 FFAIVDPLRKLHSGIGGKRATRCTILIVAAIWIFAILCAIPSMTLSYVRAFKDDTNNNTL 65
F ++V + G+ + ++ FA+ I L A
Sbjct: 52 FASLVVGAASISPARLGRVGVK-IVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQ 110
Query: 66 FESCYPFPPIDGYPNYPRTVIIMRFLIYYAVPLLIIACFYSLMARSLILSTKNMPGELQG 125
F+ P + + T +P + A + A + +++++N
Sbjct: 111 FQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGI-AITYLMNSENEKVRKSA 169
Query: 126 QTRQIRARKKVAKTVLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCL 185
+T + A +A+ + V F + + + + + V L
Sbjct: 170 ETL-LDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGL 228
Query: 186 GFINSCINPIALYCVSGTFRKYFQKY 211
+ + L + +
Sbjct: 229 TLQILLVYFVLLKIYGIDPISFIKHA 254
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I
{Cow (Bos taurus) [TaxId: 9913]}
Length = 514
Score = 28.6 bits (64), Expect = 2.7
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 536 VLTFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIMSS 579
+ FV V M FFPQH FL P DY D + + +SS
Sbjct: 415 AIMFVGVN-MTFFPQH--FLGLSGMPRRYSDYPDAYTMWNTISS 455
Score = 27.4 bits (61), Expect = 5.8
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 36 IWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYA 95
+ IF++ A S L + T+ P P + +V+I L+ +
Sbjct: 145 LTIFSLHLAGVSSILGAINFI------TTIINMKPPAMSQYQTPLFVWSVMITAVLLLLS 198
Query: 96 VPLLIIACFYSLMARSL 112
+P+L L R+L
Sbjct: 199 LPVLAAGITMLLTDRNL 215
Score = 27.4 bits (61), Expect = 5.8
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 432 IWIFAILCAIPSMTLSYVRAFKDDTNNNTLFESCYPFPPIDGYPNYPRTVIIMRFLIYYA 491
+ IF++ A S L + T+ P P + +V+I L+ +
Sbjct: 145 LTIFSLHLAGVSSILGAINFI------TTIINMKPPAMSQYQTPLFVWSVMITAVLLLLS 198
Query: 492 VPLLIIACFYSLMARSL 508
+P+L L R+L
Sbjct: 199 LPVLAAGITMLLTDRNL 215
>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId:
9606]}
Length = 232
Score = 27.4 bits (59), Expect = 5.0
Identities = 6/126 (4%), Positives = 28/126 (22%), Gaps = 9/126 (7%)
Query: 142 TFVVVFAMCFFPQHFFFLWFYINPTAPDDYNDFWHILRIVGFCLGFINSCINPIALYCVS 201
+V+ A C + + + T + + + + + + L ++
Sbjct: 34 DWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLT 93
Query: 202 GTFRKYFQKYLFCKMSSKIINSRNANARRFHRPSTYSSTRKWDSMSTTHNPNNLQMNTFR 261
+ + + + ++ + L+
Sbjct: 94 EKAKINKYVTILHLPKK---------GDDVKPGTMCQVAGWGRTHNSASWSDTLREVEIT 144
Query: 262 RAPQND 267
+
Sbjct: 145 IIDRKV 150
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.140 0.440
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,469,973
Number of extensions: 117122
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 30
Length of query: 647
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 556
Effective length of database: 1,158,166
Effective search space: 643940296
Effective search space used: 643940296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.6 bits)