BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9473
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VGFG+ +P TD KIFTIL + +G +H
Sbjct: 32 RPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIH 79
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VG+GN +P TD KIFTIL + +G +H
Sbjct: 32 RPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIH 79
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VG+G+ +P TD KIFTIL + +G +H
Sbjct: 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIH 79
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VG GN +P TD KIFTIL + +G +H
Sbjct: 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIH 96
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VG GN +P TD KIFTIL + +G +H
Sbjct: 31 RPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIH 78
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
R + ALYF+ +LT+VG+G +P TD KIFTIL + +G
Sbjct: 32 RPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGI 71
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
R + ALYF+ +LT+VG GN +P TD KIFTIL + +G
Sbjct: 49 RPIDALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIG 87
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VG GN +P TD KIFTIL + +G +H
Sbjct: 49 RPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIH 96
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VG GN +P TD KIFTIL + +G +H
Sbjct: 49 RPIDALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLVFGFIH 96
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + AL+F+ +LT+VG+G+ +P TD KIFTIL + +G +H
Sbjct: 32 RPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIH 79
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VG GN P TD KIFTIL + +G +H
Sbjct: 49 RPIDALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLVFGFIH 96
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
R + ALYF+ +LT+VG GN +P TD K+FTIL + +G
Sbjct: 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIG 90
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + AL+F+ +LT+VG+G+ +P TD KIFTIL + +G +H
Sbjct: 32 RPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIH 79
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136
R + ALYF+ +LT+VG G+ +P TD KIFTIL + +G +H
Sbjct: 32 RPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIH 79
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
R + ALYF+ +LT+VG P TD KIFTIL + +G
Sbjct: 32 RPIDALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGI 70
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
R + ALYF+ +LT+VG P TD KIFTIL + +G
Sbjct: 32 RPIDALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGI 70
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
R + ALYF+ +LT+VG P TD KIFTIL + +G
Sbjct: 32 RPIDALYFSVVTLTTVG-ETPPPQTDFGKIFTILYIFIGI 70
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 92 TALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+A +F+ + +T++G+GNVA TD ++F I LVG
Sbjct: 118 SAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVG 153
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 85 SIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
SIKS + AL++ + T+VG+G+V P T K+ I VML G
Sbjct: 174 SIKSVF-DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 216
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 85 SIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
SIKS + AL++ + T+VG+G+V P T K+ I VML G
Sbjct: 162 SIKSVF-DALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 204
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHC 149
+ +AL+F + L++ G+G+ P +D K F I+ ++G + + A + I H
Sbjct: 94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPF---TLLFLTAVVQRITVHV 150
Query: 150 KRGP 153
R P
Sbjct: 151 TRRP 154
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P+T FT+ ++++G
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLG 83
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P+T FT+ ++++G
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLG 83
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P+T FT ++++G
Sbjct: 36 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 73
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P+T FT ++++G
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P+T FT ++++G
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P+T FT ++++G
Sbjct: 29 WTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLG 66
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P T FT ++++G
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLG 66
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 84 PSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMG 143
PSI A ++ S+T+VG+G++ P T KI L + G + + ++
Sbjct: 359 PSIPD----AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 414
Query: 144 HIIPHCKRGPEQLGASYL 161
+ G EQ A YL
Sbjct: 415 YFYHRETEGEEQ--AQYL 430
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 84 PSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMG 143
PSI A ++ S+T+VG+G++ P T KI L + G + + ++
Sbjct: 359 PSIPD----AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 414
Query: 144 HIIPHCKRGPEQLGASYL 161
+ G EQ A YL
Sbjct: 415 YFYHRETEGEEQ--AQYL 430
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 84 PSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMG 143
PSI A ++ S+T+VG+G++ P T KI L + G + + ++
Sbjct: 374 PSIPD----AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 429
Query: 144 HIIPHCKRGPEQLGASYL 161
+ G EQ A YL
Sbjct: 430 YFYHRETEGEEQ--AQYL 445
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 28.5 bits (62), Expect = 1.8, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 84 PSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMG 143
PSI A ++ S+T+VG+G++ P T KI L + G + + ++
Sbjct: 374 PSIPD----AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFN 429
Query: 144 HIIPHCKRGPEQLGASYL 161
+ G EQ A YL
Sbjct: 430 YFYHRETEGEEQ--AQYL 445
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
+V A +F+ +L +VG+G++ P T L + VG
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
+V A +F+ +L +VG+G++ P T L + VG
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
>pdb|2LE7|A Chain A, Solution Nmr Structure Of The S4s5 Linker Of Herg
Potassium Channel
Length = 20
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 24 DRYSEYGAAVLL 35
DRYSEYGAAVL
Sbjct: 9 DRYSEYGAAVLF 20
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKY 130
++ +Y+T + +T++GFG++ +D +F +V + G +
Sbjct: 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIF 92
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKY 130
++ +Y+T + +T++GFG++ +D +F +V + G +
Sbjct: 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIF 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,137,528
Number of Sequences: 62578
Number of extensions: 153187
Number of successful extensions: 283
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 40
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)