Query psy9473
Match_columns 161
No_of_seqs 107 out of 1309
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 20:18:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0501|consensus 99.9 2.4E-27 5.1E-32 189.4 11.8 149 1-149 320-483 (971)
2 PLN03192 Voltage-dependent pot 99.9 7.7E-26 1.7E-30 193.9 13.8 133 5-145 168-306 (823)
3 KOG0498|consensus 99.9 2.5E-23 5.4E-28 172.8 15.7 142 3-145 196-350 (727)
4 KOG0500|consensus 99.9 2.1E-21 4.6E-26 152.7 10.6 139 6-148 98-241 (536)
5 KOG3713|consensus 99.9 2.1E-21 4.7E-26 153.1 8.9 119 4-145 312-433 (477)
6 KOG1419|consensus 99.8 3.4E-19 7.3E-24 141.9 8.3 135 2-154 195-334 (654)
7 KOG1545|consensus 99.7 1.8E-19 4E-24 137.5 -3.3 61 83-143 387-447 (507)
8 KOG0499|consensus 99.7 6.3E-17 1.4E-21 130.1 8.5 131 7-158 332-467 (815)
9 PF07885 Ion_trans_2: Ion chan 99.6 2.2E-15 4.8E-20 94.0 9.8 56 88-143 23-78 (79)
10 KOG1420|consensus 99.6 7.7E-15 1.7E-19 118.3 7.0 139 5-160 221-359 (1103)
11 KOG4390|consensus 99.4 1.1E-15 2.5E-20 118.1 -5.4 119 5-146 292-413 (632)
12 PRK10537 voltage-gated potassi 99.4 1.8E-11 3.8E-16 97.4 13.9 53 88-140 167-219 (393)
13 PF00520 Ion_trans: Ion transp 99.4 2E-11 4.2E-16 87.5 12.1 127 4-137 64-199 (200)
14 PF01007 IRK: Inward rectifier 99.3 7.9E-11 1.7E-15 91.7 11.2 106 34-148 38-145 (336)
15 KOG3827|consensus 98.9 5.4E-09 1.2E-13 81.1 8.3 108 35-151 67-176 (400)
16 KOG1418|consensus 98.8 4.9E-09 1.1E-13 83.5 5.3 60 89-148 115-174 (433)
17 KOG4404|consensus 98.6 1.7E-07 3.6E-12 71.5 7.4 53 89-141 186-246 (350)
18 KOG3684|consensus 98.5 2.7E-06 6E-11 67.7 12.4 57 86-142 284-340 (489)
19 KOG4404|consensus 98.1 8.8E-07 1.9E-11 67.6 0.2 50 89-138 80-129 (350)
20 KOG1418|consensus 97.8 3E-06 6.5E-11 67.6 -1.3 48 88-135 241-296 (433)
21 KOG3193|consensus 96.5 0.003 6.5E-08 52.1 3.6 43 89-131 217-259 (1087)
22 PF00520 Ion_trans: Ion transp 96.0 0.22 4.7E-06 35.0 10.8 123 4-135 61-192 (200)
23 PLN03223 Polycystin cation cha 95.9 0.25 5.5E-06 45.2 12.6 41 4-44 1300-1340(1634)
24 PF00060 Lig_chan: Ligand-gate 95.7 0.022 4.8E-07 38.8 4.5 62 85-147 40-101 (148)
25 TIGR00870 trp transient-recept 93.5 3.2 7E-05 36.1 13.4 25 33-57 507-531 (743)
26 PF08016 PKD_channel: Polycyst 93.1 2.8 6.2E-05 34.0 11.7 50 5-54 306-355 (425)
27 KOG4440|consensus 92.4 1 2.2E-05 38.4 8.1 90 42-142 577-666 (993)
28 KOG2302|consensus 91.3 6.1 0.00013 35.9 11.9 26 2-27 1219-1244(1956)
29 KOG1054|consensus 89.7 0.36 7.7E-06 40.7 3.2 52 89-141 595-646 (897)
30 KOG3676|consensus 85.7 7.1 0.00015 34.2 8.6 50 102-151 601-652 (782)
31 KOG1052|consensus 80.9 11 0.00023 32.5 8.0 53 90-143 382-434 (656)
32 KOG1545|consensus 77.6 6.1 0.00013 31.7 5.0 29 29-57 356-384 (507)
33 KOG2301|consensus 76.9 73 0.0016 30.8 12.3 23 5-27 530-552 (1592)
34 KOG3713|consensus 74.6 19 0.0004 29.9 7.2 25 6-30 308-332 (477)
35 TIGR00933 2a38 potassium uptak 67.5 47 0.001 26.7 8.2 43 88-130 230-274 (390)
36 KOG1053|consensus 65.7 1.1E+02 0.0023 28.0 10.1 51 90-142 610-662 (1258)
37 PF03579 SHP: Small hydrophobi 63.6 26 0.00057 20.1 4.4 35 118-152 17-51 (64)
38 PF07077 DUF1345: Protein of u 62.5 55 0.0012 23.5 12.2 52 85-136 128-179 (180)
39 PF02386 TrkH: Cation transpor 60.5 78 0.0017 25.0 8.1 40 90-129 295-340 (354)
40 KOG3609|consensus 60.4 59 0.0013 29.0 7.7 14 89-102 553-566 (822)
41 COG4291 Predicted membrane pro 52.8 68 0.0015 23.6 5.9 59 83-141 164-222 (228)
42 PLN03223 Polycystin cation cha 52.7 1.2E+02 0.0026 29.0 8.6 60 86-147 1358-1427(1634)
43 PLN03192 Voltage-dependent pot 51.3 79 0.0017 28.2 7.4 19 4-22 170-188 (823)
44 KOG2302|consensus 51.0 53 0.0012 30.3 6.0 22 121-142 1367-1388(1956)
45 KOG0500|consensus 49.7 87 0.0019 26.3 6.7 24 134-157 223-246 (536)
46 TIGR00934 2a38euk potassium up 45.6 2.3E+02 0.0049 25.5 10.3 96 34-145 451-553 (800)
47 KOG2301|consensus 45.1 74 0.0016 30.8 6.3 25 3-27 531-555 (1592)
48 PF05399 EVI2A: Ectropic viral 44.6 70 0.0015 23.7 5.0 22 139-161 158-179 (227)
49 PF10011 DUF2254: Predicted me 44.4 84 0.0018 25.2 6.0 56 85-140 96-151 (371)
50 PF00287 Na_K-ATPase: Sodium / 44.0 1E+02 0.0022 23.9 6.2 38 30-67 38-75 (289)
51 PF02386 TrkH: Cation transpor 40.6 95 0.0021 24.5 5.7 47 84-130 171-219 (354)
52 COG1226 Kch Kef-type K+ transp 39.9 13 0.00028 25.9 0.7 45 88-132 116-160 (212)
53 PF15065 NCU-G1: Lysosomal tra 38.2 56 0.0012 26.1 4.0 37 103-139 304-340 (350)
54 KOG3927|consensus 35.2 95 0.0021 24.3 4.8 35 32-66 47-81 (300)
55 PRK05482 potassium-transportin 35.2 2.7E+02 0.0057 24.0 7.6 116 36-158 282-412 (559)
56 KOG3599|consensus 34.8 3.4E+02 0.0075 24.5 15.0 32 7-38 565-596 (798)
57 COG2165 PulG Type II secretory 33.5 11 0.00024 25.0 -0.5 32 115-146 6-37 (149)
58 KOG2568|consensus 33.2 1.9E+02 0.0041 24.5 6.4 31 4-34 359-389 (518)
59 TIGR00934 2a38euk potassium up 31.6 2.2E+02 0.0048 25.5 6.8 47 83-130 614-662 (800)
60 PF11023 DUF2614: Protein of u 30.3 38 0.00081 22.4 1.6 37 117-153 36-79 (114)
61 KOG0501|consensus 29.4 2.6E+02 0.0057 24.4 6.6 46 5-58 321-366 (971)
62 PF02285 COX8: Cytochrome oxid 29.3 1E+02 0.0022 16.7 3.2 22 110-131 8-29 (44)
63 PRK11876 petM cytochrome b6-f 29.2 86 0.0019 15.8 2.9 26 116-141 3-28 (32)
64 COG3817 Predicted membrane pro 28.5 55 0.0012 25.1 2.4 37 88-125 31-67 (313)
65 PF01102 Glycophorin_A: Glycop 28.4 1.9E+02 0.0041 19.4 4.8 29 117-145 66-94 (122)
66 KOG3012|consensus 28.0 1.2E+02 0.0025 22.8 4.0 58 100-157 93-151 (259)
67 KOG2568|consensus 28.0 3.8E+02 0.0082 22.8 11.7 26 89-114 278-303 (518)
68 TIGR01710 typeII_sec_gspG gene 27.9 35 0.00077 23.0 1.2 21 119-139 3-23 (134)
69 TIGR01107 Na_K_ATPase_bet Sodi 26.5 2.2E+02 0.0048 22.2 5.4 38 30-67 37-74 (289)
70 PF11087 DUF2881: Protein of u 26.0 56 0.0012 17.9 1.5 20 116-135 6-25 (54)
71 PF11773 PulG: Type II secreto 25.5 53 0.0012 20.4 1.6 27 122-148 3-29 (82)
72 TIGR01707 gspI general secreti 23.8 1E+02 0.0022 19.7 2.8 20 120-139 3-22 (101)
73 PF02060 ISK_Channel: Slow vol 22.4 2E+02 0.0044 19.4 4.0 25 117-141 45-69 (129)
74 PF08507 COPI_assoc: COPI asso 22.3 1.8E+02 0.004 19.5 4.0 36 90-131 68-103 (136)
75 PF06166 DUF979: Protein of un 21.9 3.4E+02 0.0073 21.4 5.6 27 88-115 27-53 (308)
76 KOG3088|consensus 21.8 4E+02 0.0086 20.9 7.6 31 37-67 200-230 (313)
77 PF13623 SurA_N_2: SurA N-term 21.7 1.1E+02 0.0025 21.0 2.9 18 121-138 10-27 (145)
78 PRK02935 hypothetical protein; 21.7 1.1E+02 0.0024 20.0 2.6 38 117-154 37-81 (110)
79 KOG0498|consensus 21.3 4.5E+02 0.0098 23.5 6.8 36 122-157 323-358 (727)
80 COG1615 Uncharacterized conser 21.1 1.1E+02 0.0024 27.2 3.1 38 98-135 219-256 (885)
81 PRK13718 conjugal transfer pro 20.6 2.2E+02 0.0048 17.5 5.2 45 109-155 35-80 (84)
No 1
>KOG0501|consensus
Probab=99.95 E-value=2.4e-27 Score=189.40 Aligned_cols=149 Identities=48% Similarity=0.847 Sum_probs=131.1
Q ss_pred ChhhhHHHHHHHHHhHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------Cccchhhchhcc
Q psy9473 1 TTTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEK--------SSVGWLDILAND 72 (161)
Q Consensus 1 ~~~~~~llr~~Rllrl~r~~~~~~~~~~~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~--------~~~~w~~~~~~~ 72 (161)
+.++|+.||.+||+|+-|+.|++++|.+++.+.++.+++.+.++.||+||+||.++.+|. ..++|+.+..++
T Consensus 320 I~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA~LvLLlC~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~ 399 (971)
T KOG0501|consen 320 IGSLFSALKVVRLLRLGRVARKLDHYLEYGAAVLVLLLCVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLAND 399 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhh
Confidence 368899999999999999999999999999999999999999999999999999999765 247999988777
Q ss_pred ccccccCC-------CCCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 73 THQFYING-------TGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 73 ~~~~~~~~-------~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
...++.-. ..+++..+.|+.|+||.+++|||||||++.|.|+.|++|+++.|++|.+++|.+.|.+...+++.
T Consensus 400 ~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM 479 (971)
T KOG0501|consen 400 IGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQM 479 (971)
T ss_pred cCCCceeccCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 76654211 34777788999999999999999999999999999999999999999999999999887777665
Q ss_pred chhc
Q psy9473 146 IPHC 149 (161)
Q Consensus 146 ~~~~ 149 (161)
-.+.
T Consensus 480 ~s~T 483 (971)
T KOG0501|consen 480 TSNT 483 (971)
T ss_pred Hhhh
Confidence 4443
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.93 E-value=7.7e-26 Score=193.85 Aligned_cols=133 Identities=23% Similarity=0.394 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccchhhchhcccccccc
Q psy9473 5 IGLLKTARLLRLVRVARKIDRYSE-----YGAAVLLLLMATFALIAHWLACIWYAIGNAE-KSSVGWLDILANDTHQFYI 78 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~~~~~~~~~-----~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~-~~~~~w~~~~~~~~~~~~~ 78 (161)
++++|++|++|+.|+.+.+++.++ ....++.++++.++++.||+||+||.++... .++.+|++....
T Consensus 168 ~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~------- 240 (823)
T PLN03192 168 YSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIP------- 240 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhh-------
Confidence 455666666666666666665543 2234578899999999999999999998753 346789875322
Q ss_pred CCCCCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 79 NGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 79 ~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
+..+.+.+.+|+.|+||+++|||||||||+.|.|..|+++++++|++|+.++|+++|.+.+.+.+.
T Consensus 241 -~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~ 306 (823)
T PLN03192 241 -NFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEG 306 (823)
T ss_pred -ccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234578899999999999999999999999999999999999999999999999999987766443
No 3
>KOG0498|consensus
Probab=99.91 E-value=2.5e-23 Score=172.79 Aligned_cols=142 Identities=34% Similarity=0.548 Sum_probs=112.9
Q ss_pred hhhHHHHHHHHHhHHhHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHhcCCC---cc-chhhchhc
Q psy9473 3 TLIGLLKTARLLRLVRVARKIDRYSEYGAAV-------LLLLMATFALIAHWLACIWYAIGNAEKS---SV-GWLDILAN 71 (161)
Q Consensus 3 ~~~~llr~~Rllrl~r~~~~~~~~~~~~~~~-------l~~~~~~~~~~~h~~aci~~~i~~~~~~---~~-~w~~~~~~ 71 (161)
.+..++.+.||+|+.|+.++++|+++..... ..++++.+++++||.||+||+++..+.+ .. +|+.....
T Consensus 196 ~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~ 275 (727)
T KOG0498|consen 196 ILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR 275 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc
Confidence 4678888999999999999999988753333 4588888999999999999999987662 23 77764321
Q ss_pred ccccccc--CCCCCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 72 DTHQFYI--NGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 72 ~~~~~~~--~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
...... ......++..+|..|+||++++|||+||||..|++..|++|+++.|++|..++|+++|++.+-++..
T Consensus 276 -~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ 350 (727)
T KOG0498|consen 276 -LLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSL 350 (727)
T ss_pred -ccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHH
Confidence 111111 1255778888999999999999999999999999999999999999999999988877776665443
No 4
>KOG0500|consensus
Probab=99.86 E-value=2.1e-21 Score=152.69 Aligned_cols=139 Identities=22% Similarity=0.373 Sum_probs=111.8
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccchhhchhccccccccCC
Q psy9473 6 GLLKTARLLRLVRVARKIDRYSE----YGAAVLLLLMATFALIAHWLACIWYAIGNAEK-SSVGWLDILANDTHQFYING 80 (161)
Q Consensus 6 ~llr~~Rllrl~r~~~~~~~~~~----~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~-~~~~w~~~~~~~~~~~~~~~ 80 (161)
.+.|++|++|++|+.+.+++.+. .+..++.+++.+.++++||.||++|.++..+. ..++|+...-.++. ...
T Consensus 98 ~~~r~nRllk~yRl~~F~~rTetrT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~~g~~~d~wvY~~i~d~~---~~~ 174 (536)
T KOG0500|consen 98 SLERLNRLLKIYRLFEFFDRTETRTTYPNAFRISKLVHYCLILFHWNACLYFLISKAIGFTTDDWVYPKINDPE---FAT 174 (536)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHhcCccccccccCCccCcc---ccc
Confidence 34578888888888888888664 47777999999999999999999999998766 35668743211111 112
Q ss_pred CCCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy9473 81 TGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 81 ~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~ 148 (161)
....+...+|..|+|||.-|+||+| ..+.|.+..|..|.++-.++|+++||.++|.+.+.+++...+
T Consensus 175 c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~ 241 (536)
T KOG0500|consen 175 CDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAA 241 (536)
T ss_pred cchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHH
Confidence 3345578899999999999999999 999999999999999999999999999988887777665443
No 5
>KOG3713|consensus
Probab=99.85 E-value=2.1e-21 Score=153.08 Aligned_cols=119 Identities=17% Similarity=0.274 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHhHHhHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCC
Q psy9473 4 LIGLLKTARLLRLVRVARKIDR---YSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYING 80 (161)
Q Consensus 4 ~~~llr~~Rllrl~r~~~~~~~---~~~~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~ 80 (161)
++|++|++|++||-|+...++. ..+.+...+..+++++.+.+-.+|-+-|+++..+.
T Consensus 312 vlR~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~-------------------- 371 (477)
T KOG3713|consen 312 VLRVLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEP-------------------- 371 (477)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--------------------
Confidence 3444444444444444433333 22344445667777777778888888888875554
Q ss_pred CCCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 81 TGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 81 ~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
.+.+.+...++|||++|||||||||++|.|..|++++..+++.|++..|+++..++++.++-
T Consensus 372 ---~~~FtSIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~ 433 (477)
T KOG3713|consen 372 ---DTKFTSIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMY 433 (477)
T ss_pred ---CCCCccccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHH
Confidence 23367788899999999999999999999999999999999999999999999998887543
No 6
>KOG1419|consensus
Probab=99.79 E-value=3.4e-19 Score=141.94 Aligned_cols=135 Identities=17% Similarity=0.317 Sum_probs=107.0
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHHhhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhcccccc
Q psy9473 2 TTLIGLLKTARLLRLVRVARKIDRYSEYGAAVL-----LLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQF 76 (161)
Q Consensus 2 ~~~~~llr~~Rllrl~r~~~~~~~~~~~~~~~l-----~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~ 76 (161)
++.+|-+|++.++|+.|+-|.---|+.++.... +....|+-++.-.++....++++.+..
T Consensus 195 tSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~--------------- 259 (654)
T KOG1419|consen 195 TSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQ--------------- 259 (654)
T ss_pred hhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---------------
Confidence 356778888888888888887777776544442 445555556666677777777665542
Q ss_pred ccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcCCCCC
Q psy9473 77 YINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHCKRGPE 154 (161)
Q Consensus 77 ~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~~~~ 154 (161)
+......+..|.+|+||.++|+|||||||.+|.|+.+|+++.++.++|+.+||.+.|.+.+.+.-++++.+|++|
T Consensus 260 ---~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKH 334 (654)
T KOG1419|consen 260 ---GEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKH 334 (654)
T ss_pred ---cccccccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHH
Confidence 234566678999999999999999999999999999999999999999999999999999988888887777665
No 7
>KOG1545|consensus
Probab=99.71 E-value=1.8e-19 Score=137.47 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=55.6
Q ss_pred CCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9473 83 GPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMG 143 (161)
Q Consensus 83 ~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~ 143 (161)
..+.+++..+|||||++|||||||||+.|.|..++++..+|.+.|++-+|.++..++++.+
T Consensus 387 ~~S~F~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 387 PESHFSSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred CccCCCcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccc
Confidence 4556677889999999999999999999999999999999999999999999998887763
No 8
>KOG0499|consensus
Probab=99.69 E-value=6.3e-17 Score=130.13 Aligned_cols=131 Identities=18% Similarity=0.309 Sum_probs=106.6
Q ss_pred HHHHHHHHhHHhHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccchhhchhccccccccCCC
Q psy9473 7 LLKTARLLRLVRVARKIDRYS----EYGAAVLLLLMATFALIAHWLACIWYAIGNAEK-SSVGWLDILANDTHQFYINGT 81 (161)
Q Consensus 7 llr~~Rllrl~r~~~~~~~~~----~~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~-~~~~w~~~~~~~~~~~~~~~~ 81 (161)
+.|+.|.+++-.+.....+.. +.+..++.++..+++++.|+.||+||+.+.++. +...|+..
T Consensus 332 ~wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~SayqglG~~rWVyd------------- 398 (815)
T KOG0499|consen 332 MWRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWASAYQGLGTTRWVYD------------- 398 (815)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHHhhcccccceeEEc-------------
Confidence 346666666666665555443 457777899999999999999999999999877 45778731
Q ss_pred CCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcCCCCCcccC
Q psy9473 82 GGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHCKRGPEQLGA 158 (161)
Q Consensus 82 ~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (161)
+....|++|+||+..|++|+| |...|++..|.+|..+-.+.|++.| +.++++|.+++..+++.+++..+
T Consensus 399 ---g~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvF----slliGQmRDvi~aAt~nq~~fr~ 467 (815)
T KOG0499|consen 399 ---GEGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVF----SLLIGQMRDVIGAATANQNYFRA 467 (815)
T ss_pred ---CCCCceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhccHHHHHH
Confidence 222469999999999999999 9999999999999999999999999 77777788888888888776543
No 9
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.65 E-value=2.2e-15 Score=94.01 Aligned_cols=56 Identities=32% Similarity=0.660 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMG 143 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~ 143 (161)
.+|.+|+||+++++||+||||..|.++.+|+++++.++.|+.+++..++.+.+.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46999999999999999999999999999999999999999999998888877664
No 10
>KOG1420|consensus
Probab=99.56 E-value=7.7e-15 Score=118.31 Aligned_cols=139 Identities=18% Similarity=0.263 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCC
Q psy9473 5 IGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGP 84 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~~~~~~~~~~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 84 (161)
+|++|.+|++....+++.++-.+..+..++..++.+++-++.-.|.+..+++. +.+.|-. ...
T Consensus 221 lrflralrlmtvpdilqylnilktsssirl~qlvsifisvwltaag~ihllen---sgdp~~~--------------f~n 283 (1103)
T KOG1420|consen 221 LRFLRALRLMTVPDILQYLNILKTSSSIRLVQLVSIFISVWLTAAGFIHLLEN---SGDPWEN--------------FQN 283 (1103)
T ss_pred HHHHHHHHhccHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhcceeehhhc---CCChhHh--------------ccC
Confidence 67888888988899999888888888888988888666554444555554433 3334431 112
Q ss_pred chhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcCCCCCcccCCC
Q psy9473 85 SIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHCKRGPEQLGASY 160 (161)
Q Consensus 85 ~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (161)
+....|+++.||-++||+||||||++.+|..||.|.+++++.|.++||..+..++.-+++...-.+.-+.|...+|
T Consensus 284 ~hrltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~ehgkkh 359 (1103)
T KOG1420|consen 284 NHRLTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEHGKKH 359 (1103)
T ss_pred cccchhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhcCCee
Confidence 2335799999999999999999999999999999999999999999999999998888877766666666665554
No 11
>KOG4390|consensus
Probab=99.45 E-value=1.1e-15 Score=118.07 Aligned_cols=119 Identities=16% Similarity=0.343 Sum_probs=85.8
Q ss_pred hHHHHHHHHHhHHhHHHHHHH--HHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCC
Q psy9473 5 IGLLKTARLLRLVRVARKIDR--YSEYGA-AVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGT 81 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~~~~~~--~~~~~~-~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~ 81 (161)
+|++|+.|+++..|+.+.++- |...+. ..+--+++.+...+..+|-+.|+.+. .
T Consensus 292 LRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK-----------------------g 348 (632)
T KOG4390|consen 292 LRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK-----------------------G 348 (632)
T ss_pred EEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc-----------------------c
Confidence 455666666666666654432 222222 22433444445555556666665432 2
Q ss_pred CCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9473 82 GGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHII 146 (161)
Q Consensus 82 ~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~ 146 (161)
...+.+.+...|||+.++||||.||||+.|.|.+|+++..+|.+-|++++|.++..++++.+++-
T Consensus 349 ~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIY 413 (632)
T KOG4390|consen 349 SSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIY 413 (632)
T ss_pred ccccccccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHH
Confidence 23556677888999999999999999999999999999999999999999999999988887764
No 12
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.38 E-value=1.8e-11 Score=97.37 Aligned_cols=53 Identities=26% Similarity=0.667 Sum_probs=48.9
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIA 140 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~ 140 (161)
..+.+|+||+++|+||+||||+.|.+..+|++++++++.|+.++++.++.+..
T Consensus 167 ~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 167 ESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999888776654
No 13
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.36 E-value=2e-11 Score=87.46 Aligned_cols=127 Identities=23% Similarity=0.312 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhHHhHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCC
Q psy9473 4 LIGLLKTARLLRLVRVARKIDRYS---EYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYING 80 (161)
Q Consensus 4 ~~~llr~~Rllrl~r~~~~~~~~~---~~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~ 80 (161)
+.+++|.+|++|+.|..+.+++.. ......+.+.+..+..+.|.+||+++.+.......+ +... ....++
T Consensus 64 ~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~-~~~~------~~~~~~ 136 (200)
T PF00520_consen 64 IFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSC-CDPT------WDSEND 136 (200)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS--------------SS----
T ss_pred EEEeeccccccccccccccccccccccccccccccccccccccccccccchhheecccccccc-cccc------cccccc
Confidence 334444444444444444333332 233445688888889999999999998877654211 0000 111234
Q ss_pred CCCCchhhHHHHHHHHHhhhhcccccCCcccC-----CchhHHHH-HHHHHHHHHHHHHHHHH
Q psy9473 81 TGGPSIKSRYVTALYFTFSSLTSVGFGNVAPN-----TDNEKIFT-ILVMLVGCKYESSAMHA 137 (161)
Q Consensus 81 ~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~-----t~~e~~~~-~~~~l~G~~~~a~~~~~ 137 (161)
..+.+..++|.+|+||++.++|+.|+||..|. +..+.++. ++..+.+.++.+.++|.
T Consensus 137 ~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliav 199 (200)
T PF00520_consen 137 IYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAV 199 (200)
T ss_dssp SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence 55667788999999999999999999999998 88999998 55566666777666665
No 14
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=99.26 E-value=7.9e-11 Score=91.70 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCC--ccc
Q psy9473 34 LLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGN--VAP 111 (161)
Q Consensus 34 l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd--~~p 111 (161)
+..++..+++..-.+|++||.++....+ .... + ...+..........+.++|+||+.|+||||||. +.|
T Consensus 38 l~~f~~~y~~~~~~Fa~~y~~i~~~~gd-l~~~---~-----~~~~~~~Cv~~~~~f~~aF~FSveT~tTIGYG~~~~~~ 108 (336)
T PF01007_consen 38 LLLFVLSYLLSWLFFALLYYLIAYSHGD-LEPI---H-----ADSNWTPCVSNVNSFTSAFLFSVETQTTIGYGSRYPTP 108 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCTT---T-----SBTTS-TSECT-TTHHHHHHHHHHHHTT---SSSEB-C
T ss_pred eehhHHHHHHHHHHHHHHHHHHhhhccc-chhc---c-----cccCCCCceecccchhhheeEEEEEEEEeccCCcccCC
Confidence 4455556677777799999999865331 0000 0 001112222334689999999999999999999 567
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy9473 112 NTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 112 ~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~ 148 (161)
..+..-++..+.+++|.++.|+.+|.+.+.+++...+
T Consensus 109 ~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~~R 145 (336)
T PF01007_consen 109 ECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPKKR 145 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCG
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 7788888999999999999999999999999887654
No 15
>KOG3827|consensus
Probab=98.93 E-value=5.4e-09 Score=81.13 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccCCc
Q psy9473 35 LLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTD 114 (161)
Q Consensus 35 ~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~ 114 (161)
+.+...+++-.-++|.+||.++....+ ......-.++.........+..||-||+.|-||||||--.++..
T Consensus 67 liF~~sf~~SWl~Fg~iwwlIA~~hGD---------L~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTee 137 (400)
T KOG3827|consen 67 LIFSLSFVLSWLFFGVIWWLIAYAHGD---------LEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEE 137 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC---------cccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCcc
Confidence 333343444444489999999987663 00000112345566677889999999999999999999988876
Q ss_pred hhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcCC
Q psy9473 115 NEK--IFTILVMLVGCKYESSAMHAFIAEMGHIIPHCKR 151 (161)
Q Consensus 115 ~e~--~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~ 151 (161)
... +..++.+++|.++.|+++|.+.+.|++..+++..
T Consensus 138 CP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarPkKRAeT 176 (400)
T KOG3827|consen 138 CPEAIFLLVLQSILGVIINAFMVGAIFAKIARPKKRAET 176 (400)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhe
Confidence 554 4455569999999999999999999988776543
No 16
>KOG1418|consensus
Probab=98.83 E-value=4.9e-09 Score=83.54 Aligned_cols=60 Identities=30% Similarity=0.546 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~ 148 (161)
.+.+|+|||.+++||||||++.|.|..||+++++..++|+.++..+++.+..-+.+.+.+
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~ 174 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRK 174 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999888887666555444
No 17
>KOG4404|consensus
Probab=98.61 E-value=1.7e-07 Score=71.48 Aligned_cols=53 Identities=21% Similarity=0.476 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTD--------NEKIFTILVMLVGCKYESSAMHAFIAE 141 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~--------~e~~~~~~~~l~G~~~~a~~~~~~~~~ 141 (161)
.|.+|+||+++|+|||||||.+|-.. .=+.++.+.+++|..+++..+..++-.
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLr 246 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLR 246 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999999988654 334688899999999998877666433
No 18
>KOG3684|consensus
Probab=98.53 E-value=2.7e-06 Score=67.67 Aligned_cols=57 Identities=19% Similarity=0.436 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 86 IKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142 (161)
Q Consensus 86 ~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~ 142 (161)
....|.+|.|+..+|+.++||||++|.|..||.+++++.++|...-|..+|.+.-.+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 346799999999999999999999999999999999999999999988877775544
No 19
>KOG4404|consensus
Probab=98.06 E-value=8.8e-07 Score=67.63 Aligned_cols=50 Identities=28% Similarity=0.628 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAF 138 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~ 138 (161)
++..||||+.+.+||||||...|.|..||+|+++..++|+.+--...-.+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~ 129 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI 129 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence 58999999999999999999999999999999999999976654333333
No 20
>KOG1418|consensus
Probab=97.78 E-value=3e-06 Score=67.55 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhH--------HHHHHHHHHHHHHHHHHH
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEK--------IFTILVMLVGCKYESSAM 135 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~--------~~~~~~~l~G~~~~a~~~ 135 (161)
-.|.+|+||+++++|||||||+.|.+..++ ....++.+.|....+...
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 359999999999999999999999999866 688888999998886665
No 21
>KOG3193|consensus
Probab=96.48 E-value=0.003 Score=52.14 Aligned_cols=43 Identities=19% Similarity=0.464 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHH
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYE 131 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~ 131 (161)
....|+||.++|++||||||.+|.-+...+..++.+-+...+.
T Consensus 217 ~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~i 259 (1087)
T KOG3193|consen 217 DLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLI 259 (1087)
T ss_pred eeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhcc
Confidence 4567999999999999999999999988776665554444444
No 22
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=95.97 E-value=0.22 Score=35.02 Aligned_cols=123 Identities=13% Similarity=0.099 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHhHHhHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccc--cC
Q psy9473 4 LIGLLKTARLLRLVRVARKIDRYSEYGAAV--LLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFY--IN 79 (161)
Q Consensus 4 ~~~llr~~Rllrl~r~~~~~~~~~~~~~~~--l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~--~~ 79 (161)
..++.|++|++|+.|+.+..+..+...... ..+.+...+.+.++..+.+-.+...-. ........ ..
T Consensus 61 ~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf---------~~~~~~~~~~~~ 131 (200)
T PF00520_consen 61 LLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLF---------GGSDNSCCDPTW 131 (200)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TTTS-------S
T ss_pred eEEEEEeeccccccccccccccccccccccccccccccccccccccccccccchhheec---------cccccccccccc
Confidence 345556666655555555544444443322 255566666666666666555543322 11111100 11
Q ss_pred CCCCCchhhHHHHHHHHHhhhhcccccCCcccCCchh-----HHHHHHHHHHHHHHHHHHH
Q psy9473 80 GTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNE-----KIFTILVMLVGCKYESSAM 135 (161)
Q Consensus 80 ~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e-----~~~~~~~~l~G~~~~a~~~ 135 (161)
............+++..|+.+....-.|+-.+..... ...+.+....-.++.++++
T Consensus 132 ~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 192 (200)
T PF00520_consen 132 DSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILL 192 (200)
T ss_dssp S----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHH
Confidence 2233445567778888999888877778888777776 4566666656666665443
No 23
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.91 E-value=0.25 Score=45.20 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhHHhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy9473 4 LIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALI 44 (161)
Q Consensus 4 ~~~llr~~Rllrl~r~~~~~~~~~~~~~~~l~~~~~~~~~~ 44 (161)
++..+|++|++|..+.++.+.+........+..+++.++++
T Consensus 1300 FLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IV 1340 (1634)
T PLN03223 1300 ILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMV 1340 (1634)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555555554444444444444433333
No 24
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=95.69 E-value=0.022 Score=38.81 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=46.6
Q ss_pred chhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy9473 85 SIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIP 147 (161)
Q Consensus 85 ~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~ 147 (161)
.......+++++.+.+++. +-++..|++..+|++.+++.+++.++.+...|.+.+.+.....
T Consensus 40 ~~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~~ 101 (148)
T PF00060_consen 40 RWRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPKY 101 (148)
T ss_dssp -HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred cCcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 4456788899999988877 4488999999999999999999999999999999888765533
No 25
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=93.52 E-value=3.2 Score=36.12 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9473 33 VLLLLMATFALIAHWLACIWYAIGN 57 (161)
Q Consensus 33 ~l~~~~~~~~~~~h~~aci~~~i~~ 57 (161)
.+.++++.++++.--+|+..+.+-.
T Consensus 507 dl~~F~~i~~v~l~aF~~~~~~l~~ 531 (743)
T TIGR00870 507 DILRFLFIYAVVLFGFACGLNQLYQ 531 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666667777666654
No 26
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=93.07 E-value=2.8 Score=33.97 Aligned_cols=50 Identities=26% Similarity=0.227 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 5 IGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYA 54 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~~~~~~~~~~~~~~l~~~~~~~~~~~h~~aci~~~ 54 (161)
+..+|++|++|..|....+.+.-+.....+..+.+.++++.--+|.+-+.
T Consensus 306 l~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l 355 (425)
T PF08016_consen 306 LLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYL 355 (425)
T ss_pred HHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444444544444444443334444333
No 27
>KOG4440|consensus
Probab=92.39 E-value=1 Score=38.40 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHH
Q psy9473 42 ALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTI 121 (161)
Q Consensus 42 ~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~ 121 (161)
.+-.|..|.+.|.+.....- +.+..+ +....++.......|.||+-..+..-|-|.-.|++-..|++.+
T Consensus 577 ~~SVhvVal~lYlLDrfSPF-----gRFk~~------ds~~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGm 645 (993)
T KOG4440|consen 577 GLSVHVVALMLYLLDRFSPF-----GRFKVN------DSEEEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGM 645 (993)
T ss_pred HHHHHHHHHHHHHHHhcCcc-----cceeec------cCccchhhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHH
Confidence 34578899999999877652 111111 1222344445788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9473 122 LVMLVGCKYESSAMHAFIAEM 142 (161)
Q Consensus 122 ~~~l~G~~~~a~~~~~~~~~~ 142 (161)
++.=+..++.|..++++.+-+
T Consensus 646 VWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 646 VWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred HHhhhheeeehhhhhhhhhhe
Confidence 998888888887777776543
No 28
>KOG2302|consensus
Probab=91.29 E-value=6.1 Score=35.88 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHhHHhHHHHHHHHH
Q psy9473 2 TTLIGLLKTARLLRLVRVARKIDRYS 27 (161)
Q Consensus 2 ~~~~~llr~~Rllrl~r~~~~~~~~~ 27 (161)
+++++++|.+|++|-.|.+|.+.+..
T Consensus 1219 ~kILgVlrvLRlLRtlRpLRviSra~ 1244 (1956)
T KOG2302|consen 1219 AKILGVLRVLRLLRTLRPLRVISRAP 1244 (1956)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhcc
Confidence 35677778888888777777777644
No 29
>KOG1054|consensus
Probab=89.72 E-value=0.36 Score=40.71 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAE 141 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~ 141 (161)
...+|+||++..++-=| -|+.|++..+|+.+.++.++-.++++.-+|.+.+-
T Consensus 595 gifNsLWFsLgAFMQQG-~DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAF 646 (897)
T KOG1054|consen 595 GIFNSLWFSLGAFMQQG-CDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAF 646 (897)
T ss_pred hhhHHHHHHHHHHHhcC-CCCCccccccceeccchhhhhhhhhhhhhhHHHHH
Confidence 46789999999999989 89999999999999999999999998888877544
No 30
>KOG3676|consensus
Probab=85.74 E-value=7.1 Score=34.16 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=26.6
Q ss_pred cccccCCcccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcCC
Q psy9473 102 TSVGFGNVAPNTD--NEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHCKR 151 (161)
Q Consensus 102 ttvGyGd~~p~t~--~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~ 151 (161)
.|+|+||...... ..-++.++..+.-++..-..+..+++.|++...+..+
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~ 652 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQ 652 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5799999765543 3344444444333333333446666666655444433
No 31
>KOG1052|consensus
Probab=80.95 E-value=11 Score=32.48 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=45.8
Q ss_pred HHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9473 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMG 143 (161)
Q Consensus 90 y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~ 143 (161)
...++|+++.++..-| ++..|++...|++..++.+++.++.+.-.|.+.+-+.
T Consensus 382 ~~~~~~~~~~~~~~q~-~~~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~Lt 434 (656)
T KOG1052|consen 382 LLNCLWLTVGSLLQQG-SDEIPRSLSTRLLLGAWWLFVLILISSYTANLTAFLT 434 (656)
T ss_pred cccchhhhhHHHhccC-CCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4457888888888888 6799999999999999999999999998888877763
No 32
>KOG1545|consensus
Probab=77.56 E-value=6.1 Score=31.66 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9473 29 YGAAVLLLLMATFALIAHWLACIWYAIGN 57 (161)
Q Consensus 29 ~~~~~l~~~~~~~~~~~h~~aci~~~i~~ 57 (161)
.+...+-.+++++++...+++..-|+...
T Consensus 356 aSmrElgLLIFFlfIgviLFsSavYFAEa 384 (507)
T KOG1545|consen 356 ASMRELGLLIFFLFIGVILFSSAVYFAEA 384 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhceeeeeec
Confidence 34444555555555555555555554443
No 33
>KOG2301|consensus
Probab=76.87 E-value=73 Score=30.84 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHH
Q psy9473 5 IGLLKTARLLRLVRVARKIDRYS 27 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~~~~~~~~ 27 (161)
++.+|..|++|++|+.+.....+
T Consensus 530 ~svLr~frllRIfkl~k~wp~l~ 552 (1592)
T KOG2301|consen 530 LSVLRSFRLLRIFKLIKSWPTLN 552 (1592)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 45555566655565555444433
No 34
>KOG3713|consensus
Probab=74.57 E-value=19 Score=29.90 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=12.8
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHhhh
Q psy9473 6 GLLKTARLLRLVRVARKIDRYSEYG 30 (161)
Q Consensus 6 ~llr~~Rllrl~r~~~~~~~~~~~~ 30 (161)
.++|++|++|+.|++|.-++...+.
T Consensus 308 ~vvrvlR~lRI~RI~KLaRhS~GLr 332 (477)
T KOG3713|consen 308 LVVRVLRVLRILRIFKLARHSTGLR 332 (477)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555555555554444444433
No 35
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=67.50 E-value=47 Score=26.69 Aligned_cols=43 Identities=21% Similarity=0.429 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhhhcccccCCc--ccCCchhHHHHHHHHHHHHHH
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNV--APNTDNEKIFTILVMLVGCKY 130 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~--~p~t~~e~~~~~~~~l~G~~~ 130 (161)
....++.++..++.+|.||... .--++..+++.++.|++|..-
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 4577899999999999999864 333456678888889988544
No 36
>KOG1053|consensus
Probab=65.66 E-value=1.1e+02 Score=27.99 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHH--HHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 90 YVTALY--FTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142 (161)
Q Consensus 90 y~~s~y--~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~ 142 (161)
...|+| |+++-=-+| .-..|+.+..|+...++.++++++.|.-+|++.+-|
T Consensus 610 igkaiwllwaLvFnnsV--pv~nPKgtTskiMv~VWAfFavifLAsYTANLAAfM 662 (1258)
T KOG1053|consen 610 IGKAIWLLWALVFNNSV--PVENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFM 662 (1258)
T ss_pred hhhHHHHHHHHHhCCCc--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 666543333 234677889999999999999999999999988776
No 37
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=63.57 E-value=26 Score=20.12 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcCCC
Q psy9473 118 IFTILVMLVGCKYESSAMHAFIAEMGHIIPHCKRG 152 (161)
Q Consensus 118 ~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~~ 152 (161)
.|+.+.|+.-+.++-++++.+++.+++.|+.....
T Consensus 17 YFtLi~M~lti~~~~Iv~si~~AILNKLcd~n~~h 51 (64)
T PF03579_consen 17 YFTLIFMMLTIGFFFIVTSIMAAILNKLCDLNDFH 51 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 45556666666666666777777777776655443
No 38
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=62.50 E-value=55 Score=23.46 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHH
Q psy9473 85 SIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMH 136 (161)
Q Consensus 85 ~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~ 136 (161)
+....|.|-+|||++.-+|-.-.|..+.+..-|-....-.+++-++.+.++|
T Consensus 128 ~~~P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 128 DWEPDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCCCCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4446799999999999999999999999999999999888888888877665
No 39
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=60.46 E-value=78 Score=25.00 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhhcccccCCcc---cCCch---hHHHHHHHHHHHHH
Q psy9473 90 YVTALYFTFSSLTSVGFGNVA---PNTDN---EKIFTILVMLVGCK 129 (161)
Q Consensus 90 y~~s~y~a~~tlttvGyGd~~---p~t~~---e~~~~~~~~l~G~~ 129 (161)
+.++++=+++++.|+|.+--. +.+.. .|++.++.|+.|-+
T Consensus 295 ~~~~lfe~~Sa~gtvGls~G~~~~~~s~~~~~~K~vli~~M~~GRl 340 (354)
T PF02386_consen 295 FFDALFEVISAFGTVGLSLGITTPNLSFSGPFSKLVLIFLMLLGRL 340 (354)
T ss_dssp -HHHHHHHHHHCTT--S--SSS----SSS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcCCCCCCCCCCccchhhHHHHHHHHHHHHhCc
Confidence 678999999999999765433 23344 89999999999953
No 40
>KOG3609|consensus
Probab=60.40 E-value=59 Score=28.97 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhhhc
Q psy9473 89 RYVTALYFTFSSLT 102 (161)
Q Consensus 89 ~y~~s~y~a~~tlt 102 (161)
.=..+++||+-.++
T Consensus 553 eS~~tLFWsiFglv 566 (822)
T KOG3609|consen 553 ESSKTLFWSIFGLV 566 (822)
T ss_pred HHHHHHHHHHHhcc
Confidence 45568899986554
No 41
>COG4291 Predicted membrane protein [Function unknown]
Probab=52.82 E-value=68 Score=23.64 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=44.0
Q ss_pred CCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 83 GPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAE 141 (161)
Q Consensus 83 ~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~ 141 (161)
+++....|+|-+|||++.=.|---.|..-+|..=|=....-.++.-++...+++..++.
T Consensus 164 p~~~~P~g~DFLYfs~vIgMTaQtsDtnitT~aMRr~~L~hsilSFFFNtvivAaaVN~ 222 (228)
T COG4291 164 PETPEPDGWDFLYFSFVIGMTAQTSDTNITTTAMRRVVLLHSILSFFFNTVIVAAAVNA 222 (228)
T ss_pred CCCCCCCccchhhhhHhhhhheeccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555679999999998877777788887777777676667777777776666665544
No 42
>PLN03223 Polycystin cation channel protein; Provisional
Probab=52.72 E-value=1.2e+02 Score=29.01 Aligned_cols=60 Identities=15% Similarity=0.028 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhhhhcccccCC-----cccCC----chhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy9473 86 IKSRYVTALYFTFSSLTSVGFGN-----VAPNT----DNEKI-FTILVMLVGCKYESSAMHAFIAEMGHIIP 147 (161)
Q Consensus 86 ~~~~y~~s~y~a~~tlttvGyGd-----~~p~t----~~e~~-~~~~~~l~G~~~~a~~~~~~~~~~~~~~~ 147 (161)
.+..+..|++-.+..+. |-.| ..+.. ..+.+ |..+.+++..++.-+++|.+...+++...
T Consensus 1358 ~FSTf~sSL~TLFqMLL--GDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~ 1427 (1634)
T PLN03223 1358 HFSDMTDSINSLFENLL--GDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKA 1427 (1634)
T ss_pred hhcCHHHHHHHHHHHHH--cCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666665553 3222 12222 22333 33344445555665666777666665533
No 43
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=51.30 E-value=79 Score=28.17 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHhHHhHHHH
Q psy9473 4 LIGLLKTARLLRLVRVARK 22 (161)
Q Consensus 4 ~~~llr~~Rllrl~r~~~~ 22 (161)
+++++|+.|+.|+.++++.
T Consensus 170 ~l~llrl~Rl~ri~~~~~~ 188 (823)
T PLN03192 170 LLGLLRFWRLRRVKQLFTR 188 (823)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 44
>KOG2302|consensus
Probab=50.99 E-value=53 Score=30.34 Aligned_cols=22 Identities=5% Similarity=0.102 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9473 121 ILVMLVGCKYESSAMHAFIAEM 142 (161)
Q Consensus 121 ~~~~l~G~~~~a~~~~~~~~~~ 142 (161)
++..++.-++..+++|.++.++
T Consensus 1367 sfllIvsffVlnmfVgvvvenf 1388 (1956)
T KOG2302|consen 1367 SFLLIVSFFVLNMFVGVVVENF 1388 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555667666665
No 45
>KOG0500|consensus
Probab=49.66 E-value=87 Score=26.31 Aligned_cols=24 Identities=4% Similarity=0.314 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhchhcCCCCCccc
Q psy9473 134 AMHAFIAEMGHIIPHCKRGPEQLG 157 (161)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
+.|.+++.+++.+.+.+..+.|+.
T Consensus 223 iFAtIvG~VGsmVtnmna~r~EFq 246 (536)
T KOG0500|consen 223 IFATIVGNVGSMVTNMNAARTEFQ 246 (536)
T ss_pred HHhhhhccHhHHHHhhhHHHHHHH
Confidence 466667778888888777666554
No 46
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=45.59 E-value=2.3e+02 Score=25.49 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccCC
Q psy9473 34 LLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNT 113 (161)
Q Consensus 34 l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t 113 (161)
|.+.+..+.+..|.++++....-....+ .|-. . ....-....+.|++-|++++...|+.= .|.+
T Consensus 451 L~~Iv~~Y~~~~~llG~i~l~~wi~~~~--~~~~------------~-l~~~gin~~W~aiFhAVSAFnNAGFsL-~~dS 514 (800)
T TIGR00934 451 LCSIVLVYFLGFNILGFVLLLPWINHVK--TYSE------------V-VRSKGVSPTWWGFFTAMSAFANLGLTL-TPES 514 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHH------------H-HhhcCccHHHHHHHHHHHHHhcCCCCc-CCCc
Confidence 5777777888899988876544332111 0000 0 011122346678999999999888653 3332
Q ss_pred -------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 114 -------DNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 114 -------~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
+.-.+..++.+++|.+-|..+.=.+.-.+.+.
T Consensus 515 M~~F~~~~~vllvm~~LIi~GntGFPVllrliiw~~~k~ 553 (800)
T TIGR00934 515 MVSFNKNSYLLLLMIWFIIIGNTGFPIFLRLIIWILFKI 553 (800)
T ss_pred chhhccCccHHHHHHHHHHHcccchHHHHHHHHHHHhhc
Confidence 23345666778888888876665555444443
No 47
>KOG2301|consensus
Probab=45.06 E-value=74 Score=30.80 Aligned_cols=25 Identities=8% Similarity=0.341 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHhHHhHHHHHHHHH
Q psy9473 3 TLIGLLKTARLLRLVRVARKIDRYS 27 (161)
Q Consensus 3 ~~~~llr~~Rllrl~r~~~~~~~~~ 27 (161)
+++|.+|++|+.|+.+....++...
T Consensus 531 svLr~frllRIfkl~k~wp~l~~lv 555 (1592)
T KOG2301|consen 531 SVLRSFRLLRIFKLIKSWPTLNDLV 555 (1592)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4566677777776666666555543
No 48
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=44.57 E-value=70 Score=23.65 Aligned_cols=22 Identities=5% Similarity=0.190 Sum_probs=11.2
Q ss_pred HHHHhhhchhcCCCCCcccCCCC
Q psy9473 139 IAEMGHIIPHCKRGPEQLGASYL 161 (161)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~ 161 (161)
++.+.+..+ .++.+...+.+||
T Consensus 158 VS~LKrskQ-~gKRqpRSNGDFL 179 (227)
T PF05399_consen 158 VSSLKRSKQ-VGKRQPRSNGDFL 179 (227)
T ss_pred HHHHHHHHH-hhccCCCccccee
Confidence 333444433 3455566667765
No 49
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=44.38 E-value=84 Score=25.18 Aligned_cols=56 Identities=5% Similarity=0.162 Sum_probs=38.4
Q ss_pred chhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 85 SIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIA 140 (161)
Q Consensus 85 ~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~ 140 (161)
...-.|+.+|-|++..+-+++-++........-.++++..+..+..+-+.+..+..
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~ 151 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIAR 151 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999866664544555556666666666666666555533
No 50
>PF00287 Na_K-ATPase: Sodium / potassium ATPase beta chain; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H+/K+-ATPases (3.6.3.10 from EC) and Na+/K+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases [, ]. These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H+ or Na+) in exchange for K+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilise the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit []. Different beta isoforms exist, permitting greater regulatory control. An example of a H+/K+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalisation of potassium ions, using ATP hydrolysis to drive the pump []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006754 ATP biosynthetic process, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane; PDB: 2XZB_B 3A3Y_B 3N2F_D 3B8E_D 3KDP_D 3N23_D.
Probab=44.04 E-value=1e+02 Score=23.88 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhh
Q psy9473 30 GAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLD 67 (161)
Q Consensus 30 ~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~ 67 (161)
..+.++-++++.++++-+.+|+|.++...+.+...|.+
T Consensus 38 ~~I~lFYlifY~~La~lfa~~m~v~l~tld~~~Pk~~~ 75 (289)
T PF00287_consen 38 GKILLFYLIFYAFLAALFAICMWVFLQTLDPDVPKYQD 75 (289)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHTSSSSS-S-ST
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHCCCCCCceec
Confidence 44556888899899999999999998877766566665
No 51
>PF02386 TrkH: Cation transport protein; InterPro: IPR003445 This family consists of various potassium transport proteins (Trk) and V-type sodium ATP synthase subunit J or translocating ATPase J (3.6.1.34 from EC). These proteins are involved in active sodium up-take utilizing ATP in the process. TrkH from Escherichia coli is a hydrophobic membrane protein and determines the specificity and kinetics of cation transport by the TrK system in this organism []. This protein interacts with TrkA and requires TrkE for transport activity.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport; PDB: 3PJZ_A.
Probab=40.63 E-value=95 Score=24.53 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=25.5
Q ss_pred CchhhHHHHHHHHHhhhhcccccCCcccC--CchhHHHHHHHHHHHHHH
Q psy9473 84 PSIKSRYVTALYFTFSSLTSVGFGNVAPN--TDNEKIFTILVMLVGCKY 130 (161)
Q Consensus 84 ~~~~~~y~~s~y~a~~tlttvGyGd~~p~--t~~e~~~~~~~~l~G~~~ 130 (161)
.........+.++..++.+|-||...... ++..+++.++.|++|..-
T Consensus 171 ~~~~~~~~~~~f~~~s~~rTtGF~t~d~~~~~~~~~~l~~~lM~IGg~~ 219 (354)
T PF02386_consen 171 GLPFGSKRLSAFFQVSSLRTTGFSTVDISQWSPFTLLLLIILMFIGGSP 219 (354)
T ss_dssp SSHHHHHHHHHHHHHHTTTT----S---SS--THHHHHHHHHTTS-S-T
T ss_pred CCcHHHHHHHHHHHHhhcCCcccCccChhhCCHHHHHHHHHHHHhcCcc
Confidence 34445566677778888999999866544 455577778888888443
No 52
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=39.95 E-value=13 Score=25.87 Aligned_cols=45 Identities=27% Similarity=0.243 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHH
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYES 132 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a 132 (161)
..+.++.+|...++++.|++++.|.+........-.++.+.....
T Consensus 116 ~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~ 160 (212)
T COG1226 116 LARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDS 160 (212)
T ss_pred EEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCch
Confidence 356677788889999999999988877766665555555544443
No 53
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=38.20 E-value=56 Score=26.14 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=28.2
Q ss_pred ccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 103 SVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFI 139 (161)
Q Consensus 103 tvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~ 139 (161)
.+|||+.....-.-.++.++..=+|+.+..+++|.+.
T Consensus 304 ~~G~G~PP~d~~S~lvi~i~~vgLG~P~l~li~Ggl~ 340 (350)
T PF15065_consen 304 LIGYGSPPVDSFSPLVIMIMAVGLGVPLLLLILGGLY 340 (350)
T ss_pred ecccCCCCccchhHHHHHHHHHHhhHHHHHHHHhhhe
Confidence 4899998887777777887777888888866666553
No 54
>KOG3927|consensus
Probab=35.25 E-value=95 Score=24.28 Aligned_cols=35 Identities=14% Similarity=0.412 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchh
Q psy9473 32 AVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWL 66 (161)
Q Consensus 32 ~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~ 66 (161)
+.|+-++++.++.+.+.+|+|+++.........|.
T Consensus 47 IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~ 81 (300)
T KOG3927|consen 47 ILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK 81 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 44688888999999999999999998887666676
No 55
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=35.17 E-value=2.7e+02 Score=23.97 Aligned_cols=116 Identities=14% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccc-cCCcccC-C
Q psy9473 36 LLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVG-FGNVAPN-T 113 (161)
Q Consensus 36 ~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvG-yGd~~p~-t 113 (161)
+.++....+....+.+..+..+...+.. +.....+ .+-...+..+.+...|+|-+.+|-||-| +..+... +
T Consensus 282 kivl~~~~iL~i~g~~~~~~~E~~~np~--l~~l~~~-----gn~egKE~RfG~~~salF~svTtrtTaG~fNsm~dslt 354 (559)
T PRK05482 282 WAILAAMLVLFLAGLAVTMWAELQGNPA--LAALGID-----GNMEGKEVRFGIAASALFAVVTTAASTGAVNAMHDSLT 354 (559)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHccCCcc--hhhccCC-----CCcccchhhhhhHHHHHHHHHHhhhhcchHHHHHHhhc
Q ss_pred chhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhchhcCCCCCcccC
Q psy9473 114 DNEKIFTILVMLVG-------------CKYESSAMHAFIAEMGHIIPHCKRGPEQLGA 158 (161)
Q Consensus 114 ~~e~~~~~~~~l~G-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (161)
+.+..+.++.|++| +..++.+...+.+.|....++.-..+=|..+
T Consensus 355 p~~~lv~m~lMfIG~~~pGGtGgGl~~~~tfaIL~vfi~glmvGrtpe~~gRkI~~~e 412 (559)
T PRK05482 355 PLGGLVPLLNMQLGEVIFGGVGSGLYGMLVFVILAVFIAGLMVGRTPEYLGKKIEARE 412 (559)
T ss_pred cHHHHHHHHHHHhCCCCCccchHhHHHHHHHHHHHHHHHhHccCCCCeEEccccCHHH
No 56
>KOG3599|consensus
Probab=34.84 E-value=3.4e+02 Score=24.45 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHhHHHHHHHHHhhhHHHHHHHH
Q psy9473 7 LLKTARLLRLVRVARKIDRYSEYGAAVLLLLM 38 (161)
Q Consensus 7 llr~~Rllrl~r~~~~~~~~~~~~~~~l~~~~ 38 (161)
.+|+.|++|..+.++.+.+....-...++-+.
T Consensus 565 tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~ 596 (798)
T KOG3599|consen 565 TIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFA 596 (798)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554444333344333
No 57
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.46 E-value=11 Score=25.02 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9473 115 NEKIFTILVMLVGCKYESSAMHAFIAEMGHII 146 (161)
Q Consensus 115 ~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~ 146 (161)
.++-|+.+.+++.+++++++.+.+.-.+....
T Consensus 6 ~qrGFTLiElLVvl~Iigil~~~~~p~~~~~~ 37 (149)
T COG2165 6 KQRGFTLIELLVVLAIIGILAALALPSLQGSI 37 (149)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34578888888888888888777765554433
No 58
>KOG2568|consensus
Probab=33.21 E-value=1.9e+02 Score=24.51 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhHHhHHHHHHHHHhhhHHHH
Q psy9473 4 LIGLLKTARLLRLVRVARKIDRYSEYGAAVL 34 (161)
Q Consensus 4 ~~~llr~~Rllrl~r~~~~~~~~~~~~~~~l 34 (161)
+.++-+.+|-||+.|...+++-|++......
T Consensus 359 F~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~ 389 (518)
T KOG2568|consen 359 FISLAKTLKKLRLRRNIVKLSLYRKFTNTLA 389 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999888887655443
No 59
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=31.56 E-value=2.2e+02 Score=25.55 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=33.4
Q ss_pred CCchhhHHHHHHHHHhhhhcccccCC--cccCCchhHHHHHHHHHHHHHH
Q psy9473 83 GPSIKSRYVTALYFTFSSLTSVGFGN--VAPNTDNEKIFTILVMLVGCKY 130 (161)
Q Consensus 83 ~~~~~~~y~~s~y~a~~tlttvGyGd--~~p~t~~e~~~~~~~~l~G~~~ 130 (161)
+.+...+.++|++-|+.+ =|-||.. +.-.++...++.++.|++|+.=
T Consensus 614 ~lp~g~Ril~aLFQSVst-RTAGFntVdls~Lspatlvl~iiLMyIGa~P 662 (800)
T TIGR00934 614 GLSKGIKVLNGLFQSVST-RTAGFTVVDLSQLHPAIQVSYMLMMYVSVLP 662 (800)
T ss_pred cCCHHHHHHHHHHHhccc-ccccccccchHhcChhHHHHHHHHHHhccCC
Confidence 456668899999999886 4567764 3444566677888888887554
No 60
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=30.32 E-value=38 Score=22.38 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHH-HHHHhhhchhcCCCC
Q psy9473 117 KIFTILVMLVGCKYESSA------MHAF-IAEMGHIIPHCKRGP 153 (161)
Q Consensus 117 ~~~~~~~~l~G~~~~a~~------~~~~-~~~~~~~~~~~~~~~ 153 (161)
.++..+.+++|.+..... +|.+ ....+-.||+|++..
T Consensus 36 ~~im~ifmllG~L~~l~S~~VYfwIGmlStkav~V~CP~C~K~T 79 (114)
T PF11023_consen 36 PIIMVIFMLLGLLAILASTAVYFWIGMLSTKAVQVECPNCGKQT 79 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeECCCCCChH
Confidence 455555566664432222 1221 233455688887764
No 61
>KOG0501|consensus
Probab=29.38 E-value=2.6e+02 Score=24.42 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9473 5 IGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNA 58 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~~~~~~~~~~~~~~l~~~~~~~~~~~h~~aci~~~i~~~ 58 (161)
-+|+-.++.+|+.|+-|..++..++-..--. +...+-|.+.+++..
T Consensus 321 ~SLFSaLKVVRLLRLGRVaRKLD~YlEYGAA--------~LvLLlC~y~lvAHW 366 (971)
T KOG0501|consen 321 GSLFSALKVVRLLRLGRVARKLDHYLEYGAA--------VLVLLLCVYGLVAHW 366 (971)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHHHHHHH
Confidence 3567778888888888776666654443322 233355666666543
No 62
>PF02285 COX8: Cytochrome oxidase c subunit VIII; InterPro: IPR003205 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits.This family is composed of cytochrome c oxidase subunit VIII. ; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG3_Z 3ABM_M 1OCC_Z 3ASO_Z 3AG2_Z 3ABL_M 3AG4_M 3AG1_M 3ASN_M 1OCZ_M ....
Probab=29.35 E-value=1e+02 Score=16.70 Aligned_cols=22 Identities=18% Similarity=0.156 Sum_probs=13.8
Q ss_pred ccCCchhHHHHHHHHHHHHHHH
Q psy9473 110 APNTDNEKIFTILVMLVGCKYE 131 (161)
Q Consensus 110 ~p~t~~e~~~~~~~~l~G~~~~ 131 (161)
.|.++.|..+.+..++.+.+.-
T Consensus 8 ~~~s~~e~aigltv~f~~~L~P 29 (44)
T PF02285_consen 8 EPLSPAEQAIGLTVCFVTFLGP 29 (44)
T ss_dssp S---HHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 4677888888777777766654
No 63
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=29.20 E-value=86 Score=15.75 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 116 EKIFTILVMLVGCKYESSAMHAFIAE 141 (161)
Q Consensus 116 e~~~~~~~~l~G~~~~a~~~~~~~~~ 141 (161)
+.++.+....++..+++...|.+.-.
T Consensus 3 ~EIf~~A~i~~~LvlvGlalGf~LLk 28 (32)
T PRK11876 3 SEIFGIAALFWVLIPVGLAGGALLLK 28 (32)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 46788888888888887777766543
No 64
>COG3817 Predicted membrane protein [Function unknown]
Probab=28.55 E-value=55 Score=25.05 Aligned_cols=37 Identities=32% Similarity=0.518 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHH
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVML 125 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l 125 (161)
.++..+.+|..-.+|-+| ||.-|.-..+.+.-.+..+
T Consensus 31 ~r~~t~~FW~l~~~tFl~-g~~lp~~viG~ivillAli 67 (313)
T COG3817 31 VRFGTGLFWGLFSLTFLG-GDRLPNIVIGLIVILLALI 67 (313)
T ss_pred ceecchHHHHHHHHHHhc-cccccchhHhHHHHHHHHH
Confidence 567889999999999999 9988887766554444333
No 65
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.43 E-value=1.9e+02 Score=19.42 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 117 KIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 117 ~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
...-++..+.|++....++.+.+..+.+.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555556677766666677777665544
No 66
>KOG3012|consensus
Probab=28.01 E-value=1.2e+02 Score=22.83 Aligned_cols=58 Identities=7% Similarity=0.043 Sum_probs=32.7
Q ss_pred hhcccccCCcccCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhchhcCCCCCccc
Q psy9473 100 SLTSVGFGNVAPNTDNEKIFTILVML-VGCKYESSAMHAFIAEMGHIIPHCKRGPEQLG 157 (161)
Q Consensus 100 tlttvGyGd~~p~t~~e~~~~~~~~l-~G~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
+.+|+||+-..-.+..|-+-.+++++ +-.+++|.++|.+.=-+++.--+..+...|.|
T Consensus 93 ~vssi~~a~~~~ls~~g~v~~~~~vvfvdf~~vG~iiAT~~wfi~Nryl~k~~~s~d~~ 151 (259)
T KOG3012|consen 93 VVSSIGWAYVLDLSFIGFVKFLVWVVFVDFIIVGVIIATLFWFISNRYLRKRKSSRDYD 151 (259)
T ss_pred HHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccccc
Confidence 34667777666667777555555543 34455666666665555665554444444433
No 67
>KOG2568|consensus
Probab=27.96 E-value=3.8e+02 Score=22.81 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCc
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTD 114 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~ 114 (161)
.--.++-..+..+.+.|||=++|+=.
T Consensus 278 a~K~Tlsr~LlLIVSlGYGIVkP~Lg 303 (518)
T KOG2568|consen 278 AIKKTLSRLLLLIVSLGYGIVKPTLG 303 (518)
T ss_pred HHHHHHHHHHHHHHhcCcceEecCcc
Confidence 33456677778888999999999743
No 68
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=27.91 E-value=35 Score=22.96 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy9473 119 FTILVMLVGCKYESSAMHAFI 139 (161)
Q Consensus 119 ~~~~~~l~G~~~~a~~~~~~~ 139 (161)
|+.+.+++-+++++++++.+.
T Consensus 3 FTLiEllivlaIigil~~i~~ 23 (134)
T TIGR01710 3 FTLLEIMVVLVILGLLAALVA 23 (134)
T ss_pred eeHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544443
No 69
>TIGR01107 Na_K_ATPase_bet Sodium Potassium ATPase beta subunit. This model describes the Na+/K+ ATPase beta subunit in eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium pump) is intimately associated with the plasma membrane. It couples the energy released by the hydrolysis of ATP to extrude 3 Na+ ions, with the concomitant uptake of 2K+ ions, against their ionic gradients.
Probab=26.47 E-value=2.2e+02 Score=22.17 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhh
Q psy9473 30 GAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLD 67 (161)
Q Consensus 30 ~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~ 67 (161)
....++-++++.++++-+.+|+|.++.........|-+
T Consensus 37 ~kIllFYliFY~~La~~F~~~m~v~l~Tl~~~~Pk~q~ 74 (289)
T TIGR01107 37 FKILLFYLVFYGCLAGIFIGTIQVMLQTISDFTPKYQD 74 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Confidence 34446888888888889999999999777664444543
No 70
>PF11087 DUF2881: Protein of unknown function (DUF2881); InterPro: IPR020085 This entry represents the DNA delivery proteins P32 and P34 that are found in the virion membrane. It is responsible for DNA delivery and viral infectivity []. It is also required for DNA injection in the membrane transformation event. In Enterobacteria phage PRD1 virions, which are composed of a tail-less icosahedral capsid, an inner protein-lipid membrane, and a dsDNA genome which is located inside the lipid vesicle; the DNA is packaged into a preformed procapsid. The internal membrane plays an active role in DNA delivery to the host cell by forming a tubular structure used for injecting the DNA into the host cytoplasm.
Probab=26.01 E-value=56 Score=17.95 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy9473 116 EKIFTILVMLVGCKYESSAM 135 (161)
Q Consensus 116 e~~~~~~~~l~G~~~~a~~~ 135 (161)
+-+++++..++|+.+.|.++
T Consensus 6 ~~~iti~taiigvai~av~v 25 (54)
T PF11087_consen 6 KPIITIVTAIIGVAIIAVIV 25 (54)
T ss_pred chHHHHHHHHHHHHHHhhee
Confidence 45788899999999986554
No 71
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=25.48 E-value=53 Score=20.39 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy9473 122 LVMLVGCKYESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 122 ~~~l~G~~~~a~~~~~~~~~~~~~~~~ 148 (161)
+..+++..++++++..+.+.+.+.-++
T Consensus 3 LEsLiAlall~~IvsLiL~~i~~sr~~ 29 (82)
T PF11773_consen 3 LESLIALALLATIVSLILGQIQQSRQE 29 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888988888888665443
No 72
>TIGR01707 gspI general secretion pathway protein I. Both GspI and GspJ are proteins of the type II secretion pathway, or main terminal branch of the general secretion pathway. This pathway carries proteins across the outer membrane. Note that proteins of type II secretion are cryptic in E. coli K-12 - present but not yet demonstrated to act on any target.
Probab=23.75 E-value=1e+02 Score=19.73 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9473 120 TILVMLVGCKYESSAMHAFI 139 (161)
Q Consensus 120 ~~~~~l~G~~~~a~~~~~~~ 139 (161)
+.+.+++.+.++|.....+.
T Consensus 3 TLiEvlvAlaI~ai~~~~~~ 22 (101)
T TIGR01707 3 TLLEVLVALAIFAAAALALI 22 (101)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 44555556666655544443
No 73
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=22.44 E-value=2e+02 Score=19.44 Aligned_cols=25 Identities=4% Similarity=-0.011 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 117 KIFTILVMLVGCKYESSAMHAFIAE 141 (161)
Q Consensus 117 ~~~~~~~~l~G~~~~a~~~~~~~~~ 141 (161)
..+.++..++|.+.+|+++|.+-+.
T Consensus 45 lYIL~vmgfFgff~~gImlsyvRSK 69 (129)
T PF02060_consen 45 LYILVVMGFFGFFTVGIMLSYVRSK 69 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666788888888877777554
No 74
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=22.29 E-value=1.8e+02 Score=19.47 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=22.2
Q ss_pred HHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHH
Q psy9473 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYE 131 (161)
Q Consensus 90 y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~ 131 (161)
..++++..+....+.|. +....+.+.+...+|++..
T Consensus 68 ~GRGlfyif~G~l~~~~------~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 68 IGRGLFYIFLGTLCLGQ------SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHH
Confidence 45667766655555653 5666666666666666554
No 75
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=21.86 E-value=3.4e+02 Score=21.36 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCch
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDN 115 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~ 115 (161)
.++..+++|.+-.++ ..+||..|.-..
T Consensus 27 ~R~gt~lFW~llg~~-F~~G~~lp~~~~ 53 (308)
T PF06166_consen 27 KRIGTALFWGLLGLI-FIFGDYLPPFVV 53 (308)
T ss_pred cccchHHHHHHHHHH-HHcCccchhHHH
Confidence 578889999998877 556998887555
No 76
>KOG3088|consensus
Probab=21.78 E-value=4e+02 Score=20.89 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchhh
Q psy9473 37 LMATFALIAHWLACIWYAIGNAEKSSVGWLD 67 (161)
Q Consensus 37 ~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~ 67 (161)
+.+++.+++|..-|+.-.++-...+.++|+.
T Consensus 200 ~~FFF~y~~q~~~~v~qAvgf~g~~~~G~i~ 230 (313)
T KOG3088|consen 200 GAFFFTYFFQIVFCVFQAVGFPGWGLCGWIP 230 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcchhhhhh
Confidence 4456677888888888888744444566663
No 77
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=21.74 E-value=1.1e+02 Score=20.97 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9473 121 ILVMLVGCKYESSAMHAF 138 (161)
Q Consensus 121 ~~~~l~G~~~~a~~~~~~ 138 (161)
+++.++|++++|++++-+
T Consensus 10 lLi~vIglAL~aFIv~d~ 27 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDF 27 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567889999999999876
No 78
>PRK02935 hypothetical protein; Provisional
Probab=21.67 E-value=1.1e+02 Score=19.95 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHH-HHHhhhchhcCCCCC
Q psy9473 117 KIFTILVMLVGCKYESS------AMHAFI-AEMGHIIPHCKRGPE 154 (161)
Q Consensus 117 ~~~~~~~~l~G~~~~a~------~~~~~~-~~~~~~~~~~~~~~~ 154 (161)
.++..+.+++|.+.... .+|.+. ...+-.||+|+|..+
T Consensus 37 ~~~m~ifm~~G~l~~l~S~vvYFwiGmlStkavqV~CP~C~K~TK 81 (110)
T PRK02935 37 IIIMTIFMLLGFLAVIASTVVYFWIGMLSTKAVQVICPSCEKPTK 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeeECCCCCchhh
Confidence 45555556666554432 233332 233556888877654
No 79
>KOG0498|consensus
Probab=21.33 E-value=4.5e+02 Score=23.47 Aligned_cols=36 Identities=8% Similarity=0.132 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhcCCCCCccc
Q psy9473 122 LVMLVGCKYESSAMHAFIAEMGHIIPHCKRGPEQLG 157 (161)
Q Consensus 122 ~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (161)
++.++=+++-....|.++++|++.+++.....++..
T Consensus 323 iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r 358 (727)
T KOG0498|consen 323 IFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMR 358 (727)
T ss_pred HHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHH
Confidence 333333444555688889999999998877655543
No 80
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=21.14 E-value=1.1e+02 Score=27.17 Aligned_cols=38 Identities=13% Similarity=0.342 Sum_probs=31.5
Q ss_pred hhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHH
Q psy9473 98 FSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAM 135 (161)
Q Consensus 98 ~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~ 135 (161)
-.+.++-||-|+...-+...++..+.++++++++..+.
T Consensus 219 ~g~~~GA~YTDI~~~lP~~~iL~aial~~aia~f~ai~ 256 (885)
T COG1615 219 HGTFTGAGYTDINAQLPAKLILIAIALLCAIAFFSAIF 256 (885)
T ss_pred CCcccccCceeeeeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999999999998888887765543
No 81
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=20.57 E-value=2.2e+02 Score=17.52 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=21.2
Q ss_pred cccCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhchhcCCCCCc
Q psy9473 109 VAPNTDNEKIFTILVML-VGCKYESSAMHAFIAEMGHIIPHCKRGPEQ 155 (161)
Q Consensus 109 ~~p~t~~e~~~~~~~~l-~G~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 155 (161)
++.+|..+.+.+.++++ .|++++. .-...+.+.+..++.++..+|
T Consensus 35 VK~TTa~d~l~a~~iI~~~gv~~~~--ly~ffs~Ltkl~~~d~~ks~~ 80 (84)
T PRK13718 35 VKETTADDMLAAVFVILYSGVLLFI--LYFFFSALTKLQKHDERKSDE 80 (84)
T ss_pred ccccchhHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHhcccccchh
Confidence 34455556666666665 4444332 122344444444444444333
Done!