Query psy9473
Match_columns 161
No_of_seqs 107 out of 1309
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 20:18:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a9h_A Voltage-gated potassium 99.9 1.7E-23 5.8E-28 145.3 11.6 70 87-156 82-151 (155)
2 2ih3_C Voltage-gated potassium 99.9 9.3E-23 3.2E-27 136.5 11.6 61 88-148 60-120 (122)
3 1orq_C Potassium channel; volt 99.9 3.1E-22 1.1E-26 146.8 12.0 119 4-145 98-221 (223)
4 3beh_A MLL3241 protein; transm 99.8 1.2E-20 4.2E-25 146.9 11.2 120 5-147 97-219 (355)
5 2r9r_B Paddle chimera voltage 99.8 1.1E-18 3.7E-23 141.9 11.8 93 34-149 343-435 (514)
6 2k1e_A Water soluble analogue 99.8 1E-18 3.6E-23 113.5 7.6 92 35-149 9-100 (103)
7 2q67_A Potassium channel prote 99.8 2.8E-17 9.7E-22 108.5 13.0 57 89-145 49-105 (114)
8 4h33_A LMO2059 protein; bilaye 99.8 3.6E-18 1.2E-22 116.3 8.5 56 89-144 43-98 (137)
9 3eff_K Voltage-gated potassium 99.7 1.9E-17 6.4E-22 113.1 9.3 88 35-145 9-96 (139)
10 3ouf_A Potassium channel prote 99.7 4.5E-16 1.5E-20 99.9 11.3 56 89-144 32-87 (97)
11 3vou_A ION transport 2 domain 99.7 7.5E-16 2.6E-20 106.2 11.8 52 89-140 52-103 (148)
12 3ldc_A Calcium-gated potassium 99.6 2.6E-15 8.8E-20 93.4 11.1 54 89-142 28-81 (82)
13 1xl4_A Inward rectifier potass 99.6 3E-15 1E-19 114.1 10.2 59 88-146 81-139 (301)
14 3sya_A G protein-activated inw 99.6 4E-14 1.4E-18 109.0 12.0 105 34-148 46-152 (340)
15 2qks_A KIR3.1-prokaryotic KIR 99.5 4.2E-14 1.4E-18 108.5 11.3 60 89-148 78-137 (321)
16 1p7b_A Integral membrane chann 99.5 7.5E-15 2.6E-19 113.1 7.0 60 88-147 95-154 (333)
17 3spc_A Inward-rectifier K+ cha 99.5 6E-14 2.1E-18 108.1 11.7 106 34-148 48-155 (343)
18 3pjs_K KCSA, voltage-gated pot 99.5 9.8E-16 3.3E-20 107.5 -1.9 56 88-143 66-121 (166)
19 3rvy_A ION transport protein; 99.4 2.3E-13 8E-18 102.9 7.3 67 86-152 177-249 (285)
20 3um7_A Potassium channel subfa 99.4 6.6E-13 2.3E-17 101.1 7.0 57 89-145 115-171 (309)
21 4gx0_A TRKA domain protein; me 99.4 5.3E-12 1.8E-16 103.6 11.7 81 32-137 18-99 (565)
22 3um7_A Potassium channel subfa 99.4 5.6E-12 1.9E-16 95.9 10.4 59 89-147 224-288 (309)
23 3ukm_A Potassium channel subfa 99.3 5.9E-12 2E-16 94.6 7.6 57 89-145 93-149 (280)
24 3ukm_A Potassium channel subfa 99.2 1.1E-10 3.7E-15 87.7 10.9 54 89-142 201-261 (280)
25 1lnq_A MTHK channels, potassiu 99.1 4.7E-12 1.6E-16 97.7 -1.5 56 89-144 45-100 (336)
26 4dxw_A Navrh, ION transport pr 98.6 1.2E-06 4.3E-11 63.7 13.1 61 85-145 161-226 (229)
27 3kg2_A Glutamate receptor 2; I 95.4 0.027 9.2E-07 47.6 6.3 56 88-144 562-617 (823)
28 3rvy_A ION transport protein; 84.9 2 6.9E-05 31.6 5.8 18 5-22 116-133 (285)
29 4f4l_A ION transport protein; 84.7 5.2 0.00018 25.2 7.0 62 87-148 36-103 (112)
30 4dxw_A Navrh, ION transport pr 76.9 3.8 0.00013 29.0 4.8 47 5-51 101-150 (229)
31 2r9r_B Paddle chimera voltage 76.0 3.5 0.00012 33.3 4.7 11 48-58 377-387 (514)
32 1orq_C Potassium channel; volt 72.0 19 0.00065 25.1 7.4 23 6-28 97-119 (223)
33 3beh_A MLL3241 protein; transm 63.4 3 0.0001 31.6 1.7 11 48-58 163-173 (355)
34 2lcm_A Voltage-dependent N-typ 58.1 8.9 0.00031 17.9 2.3 16 5-20 6-21 (28)
35 3ixz_B Potassium-transporting 56.4 54 0.0018 24.4 7.4 38 30-67 38-75 (290)
36 1q90_M Cytochrome B6F complex 40.2 37 0.0013 17.1 4.8 32 114-145 2-33 (39)
37 1v54_M VIIIB, IX, cytochrome C 35.4 51 0.0017 17.3 3.6 23 109-131 7-29 (46)
38 3pjz_A Potassium uptake protei 33.7 1.8E+02 0.0063 23.2 11.1 60 86-145 303-375 (494)
39 1vf5_F Protein PET M; photosyn 31.4 52 0.0018 16.2 4.1 28 116-143 3-30 (35)
40 3kdp_B Sodium/potassium-transp 27.3 1.4E+02 0.0049 22.0 5.6 38 30-67 16-53 (286)
41 2k44_A Hsapbk, K+-channel volt 25.5 3.5 0.00012 19.2 -2.1 7 7-13 17-23 (28)
42 2y69_M Cytochrome C oxidase po 24.2 1.1E+02 0.0037 17.6 3.6 25 107-131 29-53 (70)
43 2zxe_B Na+,K+-ATPase beta subu 22.7 1.6E+02 0.0056 21.9 5.3 38 30-67 34-71 (305)
44 3pjz_A Potassium uptake protei 22.3 3E+02 0.01 22.0 10.3 40 90-129 424-469 (494)
No 1
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.90 E-value=1.7e-23 Score=145.34 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcCCCCCcc
Q psy9473 87 KSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHCKRGPEQL 156 (161)
Q Consensus 87 ~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 156 (161)
..+|.+|+||+++|+|||||||+.|.|+.+|+++++++++|+.++++++|.+.+.+.+...+..+..++.
T Consensus 82 ~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~~~r~ 151 (155)
T 2a9h_A 82 LISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFVRH 151 (155)
T ss_dssp TTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---------
T ss_pred cCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3579999999999999999999999999999999999999999999999999999887765544444433
No 2
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.89 E-value=9.3e-23 Score=136.53 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~ 148 (161)
.+|.+|+||+++|+||+||||+.|.|+.||++++++++.|+.++++++|.+.+.+.+..++
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5699999999999999999999999999999999999999999999999999988776553
No 3
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.88 E-value=3.1e-22 Score=146.79 Aligned_cols=119 Identities=22% Similarity=0.325 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHhHHhHHHHHHH----HHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhcccccccc
Q psy9473 4 LIGLLKTARLLRLVRVARKIDR----YSE-YGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYI 78 (161)
Q Consensus 4 ~~~llr~~Rllrl~r~~~~~~~----~~~-~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~ 78 (161)
.+|++|++|++|+.|..+...+ ..+ .....+...+..++...|+.+|+++.++..+.
T Consensus 98 ~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~------------------ 159 (223)
T 1orq_C 98 LFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDP------------------ 159 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSST------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc------------------
Confidence 3455555555555555432211 111 11223556667777888999999887643211
Q ss_pred CCCCCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 79 NGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 79 ~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
++...+|.+|+||+++|+||+||||+.|.|+.||++++++++.|+.++|+++|.+.+.+++.
T Consensus 160 -----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 221 (223)
T 1orq_C 160 -----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKI 221 (223)
T ss_dssp -----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12235799999999999999999999999999999999999999999999999999888764
No 4
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.84 E-value=1.2e-20 Score=146.89 Aligned_cols=120 Identities=17% Similarity=0.218 Sum_probs=90.5
Q ss_pred hHHHHHHHHHhHHhHH---HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCC
Q psy9473 5 IGLLKTARLLRLVRVA---RKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGT 81 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~---~~~~~~~~~~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~ 81 (161)
+|++|++|++|+.|.. +.+.+........+...+..++++.|+.||++|.++....
T Consensus 97 ~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~~~~--------------------- 155 (355)
T 3beh_A 97 WSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQ--------------------- 155 (355)
T ss_dssp GGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------------
Confidence 3445555555555543 3333333334445666677777889999999998864322
Q ss_pred CCCchhhHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy9473 82 GGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIP 147 (161)
Q Consensus 82 ~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~ 147 (161)
++.+.+|.+|+||+++|+||+||||+.|.|+.|++++++++++|+.++++++|.+.+.+.+..+
T Consensus 156 --~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 219 (355)
T 3beh_A 156 --PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR 219 (355)
T ss_dssp --HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234579999999999999999999999999999999999999999999999999888866543
No 5
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.78 E-value=1.1e-18 Score=141.87 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccCC
Q psy9473 34 LLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNT 113 (161)
Q Consensus 34 l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t 113 (161)
+..+++.+++..+++|++.|...... ..+.+.+|.+|+||+++|+||+||||+.|.+
T Consensus 343 l~~ll~~l~i~~~if~~~~~~~e~~~-----------------------~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t 399 (514)
T 2r9r_B 343 LGLLIFFLFIGVILFSSAVYFAEADE-----------------------RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTT 399 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC-----------------------TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCS
T ss_pred HHHHHHHHHHHHHHHHhhhheeeccC-----------------------CCccccchhhhhheeeeEEEecccCCCCCCC
Confidence 34444555566677788777553111 1233467999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Q psy9473 114 DNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHC 149 (161)
Q Consensus 114 ~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~ 149 (161)
..|++++++++++|++++++++|.+.+.+++...+.
T Consensus 400 ~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~ 435 (514)
T 2r9r_B 400 IGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE 435 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred cchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887765543
No 6
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.77 E-value=1e-18 Score=113.50 Aligned_cols=92 Identities=13% Similarity=0.111 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccCCc
Q psy9473 35 LLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTD 114 (161)
Q Consensus 35 ~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~ 114 (161)
...+..++.+....+++++.++...+ ++...+|.+|+||+++|+||+||||+.|.++
T Consensus 9 l~~~~~~~~~~~~~a~~~~~~E~~~~-----------------------~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~ 65 (103)
T 2k1e_A 9 QKAEEELQKVLEEASKKAVEAERGAP-----------------------GAALISYPDAIWWSVETATTVGYGDRYPVTE 65 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTST-----------------------TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCC-----------------------CcccccHHHHHHHHHHHHhcccCCCCCCCCh
Confidence 33444445555667788877754321 1222469999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Q psy9473 115 NEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHC 149 (161)
Q Consensus 115 ~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~ 149 (161)
.+|+++++++++|+.++++.++.+.+.+.+..++.
T Consensus 66 ~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~ 100 (103)
T 2k1e_A 66 EGRKVAEQVMKAGIEVFALVTAALATDFVRREEER 100 (103)
T ss_dssp SCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998888777665543
No 7
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.75 E-value=2.8e-17 Score=108.51 Aligned_cols=57 Identities=39% Similarity=0.599 Sum_probs=52.5
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
.|.+|+||+++|+||+||||+.|.++.+|+++++.+++|+.++++.++.+.+.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999888887443
No 8
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.75 E-value=3.6e-18 Score=116.33 Aligned_cols=56 Identities=23% Similarity=0.461 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGH 144 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~ 144 (161)
.|.+|+||+++|+|||||||+.|.|+.||+++++++++|+.++|+++|.+.+.+.+
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999998888766643
No 9
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.73 E-value=1.9e-17 Score=113.09 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccCCc
Q psy9473 35 LLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTD 114 (161)
Q Consensus 35 ~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~t~ 114 (161)
...++.++...+..+++++.++.... ++....|.+|+||+++|+|||||||+.|.|+
T Consensus 9 ~~~~~~~~~~~~~~a~~~~~~e~~~~-----------------------~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~ 65 (139)
T 3eff_K 9 GAATVLLVIVLLAGSYLAVLAERGAP-----------------------GAQLITYPRALWWSVETATTVGYGDLYPVTL 65 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCT-----------------------TCCCCCHHHHHHHHHHHHTTCCCSSSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-----------------------CcccCCHHHHHHHHheeeecccCCCCcCCCc
Confidence 34444455555666777776643321 1222469999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 115 NEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 115 ~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
.+|+++++++++|+.+++++++.+.+.+.+.
T Consensus 66 ~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~ 96 (139)
T 3eff_K 66 WGRLVAVVVMVAGITSFGLVTAALATWFVGR 96 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886655443
No 10
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.69 E-value=4.5e-16 Score=99.86 Aligned_cols=56 Identities=38% Similarity=0.659 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGH 144 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~ 144 (161)
.|.+|+||+++|+||+||||+.|.++.+|+++++.+++|+.+++..++.+.+.++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 48999999999999999999999999999999999999999999999998877653
No 11
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.67 E-value=7.5e-16 Score=106.16 Aligned_cols=52 Identities=40% Similarity=0.647 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIA 140 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~ 140 (161)
.|.+|+||+++|+|||||||+.|.|+.+|+++++.+++|+.++++.++.+..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~ 103 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999998888764
No 12
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.65 E-value=2.6e-15 Score=93.42 Aligned_cols=54 Identities=24% Similarity=0.526 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~ 142 (161)
+|.+|+||+.+|+||+||||+.|.++.+|+++++.++.|+.++++.++.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999988888877653
No 13
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.61 E-value=3e-15 Score=114.06 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHII 146 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~ 146 (161)
..|.+|+|||++|+||+||||+.|.++.+++++++.+++|++++|+++|.+.+.+++..
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56999999999999999999999999999999999999999999999999999987643
No 14
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=99.56 E-value=4e-14 Score=109.01 Aligned_cols=105 Identities=14% Similarity=0.291 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccC-
Q psy9473 34 LLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPN- 112 (161)
Q Consensus 34 l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~- 112 (161)
++.++..+++..-.+|++||.++....+.. .. .+ .++.........+.+++|||++|+|||||||+.|.
T Consensus 46 llif~~~y~~swl~Fa~ly~~ia~~~Gdl~-~~----~~-----~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~ 115 (340)
T 3sya_A 46 LLIFVMVYTVTWLFFGMIWWLIAYIRGDMD-HI----ED-----PSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITD 115 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-CS----SC-----SSCCCSBSCCCSTTHHHHHHHHHHSCCCCSSSCBCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc-cc----cc-----ccccchhccccCHHHHHhhhheeeeeecCCCccCcC
Confidence 455555566667779999999885433210 00 00 01122223346789999999999999999999997
Q ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy9473 113 -TDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 113 -t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~ 148 (161)
++.+++++.+.+++|.+++|+++|.+.+.+++...+
T Consensus 116 ~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 116 KCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 688999999999999999999999999999887665
No 15
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=99.55 E-value=4.2e-14 Score=108.51 Aligned_cols=60 Identities=22% Similarity=0.379 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~ 148 (161)
.|.+|+||+++|+|||||||+.|.+..+++++++++++|++++|+++|.+.+.+++...+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~r 137 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKKR 137 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999999999999999999998775443
No 16
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=99.54 E-value=7.5e-15 Score=113.08 Aligned_cols=60 Identities=22% Similarity=0.404 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIP 147 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~ 147 (161)
..|.+|+||+++|+|||||||+.|.++.+++++++++++|++++++++|.+.+.+.+...
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999876544
No 17
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=99.54 E-value=6e-14 Score=108.11 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcccC-
Q psy9473 34 LLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPN- 112 (161)
Q Consensus 34 l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~p~- 112 (161)
++.++..+++..-.+|.+||+++..+.+- ... ....+..........+.+++|||++|+||+||||+.|.
T Consensus 48 ll~f~~~y~~swl~Fally~~ia~~~gdl-------~~~--~~~~~~~~Cv~~~~sf~~af~fSv~T~TTvGYGd~~p~~ 118 (343)
T 3spc_A 48 LLLFSLAFLVSWLLFGLIFWLIALIHGDL-------ENP--GGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTE 118 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGG-------GCT--TCCSSCCCSEETCCSHHHHHHHHHHHHSCCCCSSSEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcc-------ccc--cccccccccccccCCHHHHhheeeeeeEeecCCCccCCC
Confidence 45555566667777899999887654310 000 00001112223346799999999999999999999875
Q ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Q psy9473 113 -TDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 113 -t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~ 148 (161)
++.+++++.+.+++|++++|+++|.+.+.+++...+
T Consensus 119 ~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 119 ECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 899999999999999999999999999999887654
No 18
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.49 E-value=9.8e-16 Score=107.50 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMG 143 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~ 143 (161)
..|.+|+||+++|+|||||||+.|.|+.+|+++++++++|+.++++++|.+.+.+.
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~ 121 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFV 121 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSS
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999998888765543
No 19
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.43 E-value=2.3e-13 Score=102.86 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHhhhhcccccC-Ccc-cCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcCCC
Q psy9473 86 IKSRYVTALYFTFSSLTSVGFG-NVA-PNTDNE----KIFTILVMLVGCKYESSAMHAFIAEMGHIIPHCKRG 152 (161)
Q Consensus 86 ~~~~y~~s~y~a~~tlttvGyG-d~~-p~t~~e----~~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~~~~~~ 152 (161)
.++++.+|+||++.++||+||| |+. |.+..+ +.+..++++.|..+.+.++|.+.+.+++..++..++
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~~ 249 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQH 249 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999 985 887754 788999999999999999999999887665544433
No 20
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.38 E-value=6.6e-13 Score=101.05 Aligned_cols=57 Identities=28% Similarity=0.468 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
+|.+|+||+++|+|||||||+.|.|..+|+++++.+++|+.+++++++.+...+.+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999999999887776543
No 21
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.36 E-value=5.3e-12 Score=103.59 Aligned_cols=81 Identities=22% Similarity=0.388 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccchhhchhccccccccCCCCCCchhhHHHHHHHHHhhhhcccccCCcc
Q psy9473 32 AVLLLLMATFALIAHWLACIWYAIGN-AEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVA 110 (161)
Q Consensus 32 ~~l~~~~~~~~~~~h~~aci~~~i~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~y~~s~y~a~~tlttvGyGd~~ 110 (161)
..+...+..++++.+..+++++.+.. .+.+ . ..|.+|+||+++|+||+||||+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~-----------------------~~~~~~~y~~~~t~tTvGygd~~ 72 (565)
T 4gx0_A 18 KVLLLYCAFLLVMLLAYASIFRYLMWHLEGR--A-----------------------YSFMAGIYWTITVMTTLGFGDIT 72 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C-----------------------CCHHHHHHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--C-----------------------CchhhhhheeeeeeeeecCCCcC
Confidence 34555566666667777777776643 2211 0 14889999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy9473 111 PNTDNEKIFTILVMLVGCKYESSAMHA 137 (161)
Q Consensus 111 p~t~~e~~~~~~~~l~G~~~~a~~~~~ 137 (161)
|.++.+|+++++++++|+.++++.++.
T Consensus 73 p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 73 FESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887
No 22
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.35 E-value=5.6e-12 Score=95.95 Aligned_cols=59 Identities=24% Similarity=0.415 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEK------IFTILVMLVGCKYESSAMHAFIAEMGHIIP 147 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~------~~~~~~~l~G~~~~a~~~~~~~~~~~~~~~ 147 (161)
.|.+|+||+++|+|||||||+.|.+..++ +++++++++|+.+++++++.+.+.+....+
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999987 599999999999998888876665554443
No 23
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.29 E-value=5.9e-12 Score=94.55 Aligned_cols=57 Identities=23% Similarity=0.510 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
.|.+|+||+++|+|||||||+.|.|+.+|+++++.+++|+.++++.++.+...+.+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~ 149 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVH 149 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999888887666544
No 24
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.22 E-value=1.1e-10 Score=87.69 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCch-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDN-------EKIFTILVMLVGCKYESSAMHAFIAEM 142 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~-------e~~~~~~~~l~G~~~~a~~~~~~~~~~ 142 (161)
.|.+|+||+++|+|||||||+.|.++. +|+++++++++|+.+++.+++.+.+.+
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~ 261 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELH 261 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999995 599999999999999988888875443
No 25
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.10 E-value=4.7e-12 Score=97.65 Aligned_cols=56 Identities=23% Similarity=0.511 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9473 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGH 144 (161)
Q Consensus 89 ~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~ 144 (161)
.|.+|+||+++|+||+||||+.|.+..+|+++++++++|+.++++.++.+.+.+.+
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999998888888766544
No 26
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.61 E-value=1.2e-06 Score=63.75 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=42.3
Q ss_pred chhhHHHHHHHHHhhhhcccccCCcc----cCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q psy9473 85 SIKSRYVTALYFTFSSLTSVGFGNVA----PNTDNEKIFTILV-MLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 85 ~~~~~y~~s~y~a~~tlttvGyGd~~----p~t~~e~~~~~~~-~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
+.++++.+|+++.+.++|+.||+|+. ..++...++-+.. .+.+.++...++|.+.++.++.
T Consensus 161 ~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~ 226 (229)
T 4dxw_A 161 SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQK 226 (229)
T ss_dssp TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577999999999999999999961 2233444444444 4444666777788887777654
No 27
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=95.43 E-value=0.027 Score=47.62 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhhhcccccCCcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9473 88 SRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGH 144 (161)
Q Consensus 88 ~~y~~s~y~a~~tlttvGyGd~~p~t~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~ 144 (161)
....+++|+++.+++..| ++..|++..+|++.+++++++.++.+...|.+.+.+..
T Consensus 562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457789999999999999 89999999999999999999999999999999888754
No 28
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=84.85 E-value=2 Score=31.58 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=7.6
Q ss_pred hHHHHHHHHHhHHhHHHH
Q psy9473 5 IGLLKTARLLRLVRVARK 22 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~~~ 22 (161)
+|++|++|++|+.|..+.
T Consensus 116 lr~~RilR~lrl~~~~~~ 133 (285)
T 3rvy_A 116 LRVLRVLRLFRLVTAVPQ 133 (285)
T ss_dssp HHHHGGGGGGHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 29
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=84.67 E-value=5.2 Score=25.24 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhhhhcccccCCc-----ccCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhchh
Q psy9473 87 KSRYVTALYFTFSSLTSVGFGNV-----APNTDNEKIFTILVMLVGCKY-ESSAMHAFIAEMGHIIPH 148 (161)
Q Consensus 87 ~~~y~~s~y~a~~tlttvGyGd~-----~p~t~~e~~~~~~~~l~G~~~-~a~~~~~~~~~~~~~~~~ 148 (161)
++....|+.=.+..+|+=|+.|. ...++...++-+..+++|..+ .-.++|.+..++++..++
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~~~~ 103 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAITKEQ 103 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC----------
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777767777777676542 223344456666666666544 434566666666554443
No 30
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=76.92 E-value=3.8 Score=28.98 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhHHhHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHH
Q psy9473 5 IGLLKTARLLRLVRVARKIDRYSE---YGAAVLLLLMATFALIAHWLACI 51 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~~~~~~~~~---~~~~~l~~~~~~~~~~~h~~aci 51 (161)
+|++|++|++|+.|..+.+++..+ .....+......++++.-.+|++
T Consensus 101 lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~ 150 (229)
T 4dxw_A 101 LRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATM 150 (229)
T ss_dssp CTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555544443322 23333444444444444444543
No 31
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=75.98 E-value=3.5 Score=33.30 Aligned_cols=11 Identities=18% Similarity=0.595 Sum_probs=6.0
Q ss_pred HHHHHHHHHhc
Q psy9473 48 LACIWYAIGNA 58 (161)
Q Consensus 48 ~aci~~~i~~~ 58 (161)
..++|+.+...
T Consensus 377 ~~a~y~~~vT~ 387 (514)
T 2r9r_B 377 PDAFWWAVVSM 387 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhheeeeEE
Confidence 35666665543
No 32
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=71.97 E-value=19 Score=25.08 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHhHHHHHHHHHh
Q psy9473 6 GLLKTARLLRLVRVARKIDRYSE 28 (161)
Q Consensus 6 ~llr~~Rllrl~r~~~~~~~~~~ 28 (161)
+.+|.+|++|+.|+.|..+++.+
T Consensus 97 ~~lr~lRllRllR~~r~~~~~~~ 119 (223)
T 1orq_C 97 GLFRLVRLLRFLRILLIISRGSK 119 (223)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444444
No 33
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=63.43 E-value=3 Score=31.58 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=6.5
Q ss_pred HHHHHHHHHhc
Q psy9473 48 LACIWYAIGNA 58 (161)
Q Consensus 48 ~aci~~~i~~~ 58 (161)
..++|+.+...
T Consensus 163 ~~s~y~~~~t~ 173 (355)
T 3beh_A 163 PQAMWWAVVTL 173 (355)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhe
Confidence 45666666544
No 34
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor peptide, membrane protein; NMR {Homo sapiens}
Probab=58.07 E-value=8.9 Score=17.87 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=7.6
Q ss_pred hHHHHHHHHHhHHhHH
Q psy9473 5 IGLLKTARLLRLVRVA 20 (161)
Q Consensus 5 ~~llr~~Rllrl~r~~ 20 (161)
++.+|.+|.+|-.|.+
T Consensus 6 l~~lrtlR~LRpLr~i 21 (28)
T 2lcm_A 6 IKSLRVLRVLRPLKTI 21 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcchHHH
Confidence 4445555544444443
No 35
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=56.36 E-value=54 Score=24.40 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhh
Q psy9473 30 GAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLD 67 (161)
Q Consensus 30 ~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~ 67 (161)
..+.++-++++.++++-+..|+|.++...+.....|-+
T Consensus 38 ~~IllFYliFY~~LaglFa~~m~v~l~Tld~~~Pkyqd 75 (290)
T 3ixz_B 38 VWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQD 75 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence 44556888899899999999999999887765455544
No 36
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=40.21 E-value=37 Score=17.15 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=26.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9473 114 DNEKIFTILVMLVGCKYESSAMHAFIAEMGHI 145 (161)
Q Consensus 114 ~~e~~~~~~~~l~G~~~~a~~~~~~~~~~~~~ 145 (161)
..+.++.+....+|..+++...|.+.-.++.-
T Consensus 2 ~~~EIf~~A~i~~~L~LvGla~Gf~LLkiqg~ 33 (39)
T 1q90_M 2 EAEFIAGTALTMVGMTLVGLAIGFVLLRVESL 33 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 35788999999999999988888887777643
No 37
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=35.39 E-value=51 Score=17.30 Aligned_cols=23 Identities=13% Similarity=0.249 Sum_probs=16.5
Q ss_pred cccCCchhHHHHHHHHHHHHHHH
Q psy9473 109 VAPNTDNEKIFTILVMLVGCKYE 131 (161)
Q Consensus 109 ~~p~t~~e~~~~~~~~l~G~~~~ 131 (161)
-.|.++.|+.+.+..++.+.+.-
T Consensus 7 ~~~~s~~E~aigl~v~f~~~L~P 29 (46)
T 1v54_M 7 KTPTSPKEQAIGLSVTFLSFLLP 29 (46)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 46778889988777666666554
No 38
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=33.73 E-value=1.8e+02 Score=23.23 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHhhhhcccccCCcccC--CchhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhh
Q psy9473 86 IKSRYVTALYFTFSSLTSVGFGNVAPN--TDNEKIFTILVMLVGC-----------KYESSAMHAFIAEMGHI 145 (161)
Q Consensus 86 ~~~~y~~s~y~a~~tlttvGyGd~~p~--t~~e~~~~~~~~l~G~-----------~~~a~~~~~~~~~~~~~ 145 (161)
..++..+|++-+.+..||.||....-. ++...++.++.|++|. .=+......+.+.+.+.
T Consensus 303 ~~~~l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIGG~~GSTaGGIKv~r~~il~~~~~~el~~~ 375 (494)
T 3pjz_A 303 PYDAFDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIGGCAGSTGGGMKVIRILLLTLQGARELKRL 375 (494)
T ss_dssp HHHHHHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSCSCTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHcCCcccCCCchhHHHHHHHHHHHHHHHhcc
Confidence 446788899999999999999865433 4556677788888883 22444445555666553
No 39
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=31.44 E-value=52 Score=16.19 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9473 116 EKIFTILVMLVGCKYESSAMHAFIAEMG 143 (161)
Q Consensus 116 e~~~~~~~~l~G~~~~a~~~~~~~~~~~ 143 (161)
+.++.+....+|..+++...|.+.-.++
T Consensus 3 ~EIf~~A~i~~~LvLvGla~Gf~LLkiq 30 (35)
T 1vf5_F 3 EEMLYAALLSFGLIFVGWGLGVLLLKIQ 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 5688888888999999888887766554
No 40
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=27.35 E-value=1.4e+02 Score=22.05 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhh
Q psy9473 30 GAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLD 67 (161)
Q Consensus 30 ~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~ 67 (161)
..+.++-++++.++++-+.+|+|.++...+.....|-+
T Consensus 16 ~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyqd 53 (286)
T 3kdp_B 16 FKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQD 53 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccC
Confidence 44556888899899999999999998766654445554
No 41
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=25.49 E-value=3.5 Score=19.19 Aligned_cols=7 Identities=43% Similarity=0.800 Sum_probs=2.8
Q ss_pred HHHHHHH
Q psy9473 7 LLKTARL 13 (161)
Q Consensus 7 llr~~Rl 13 (161)
++|.+|+
T Consensus 17 FLRALRl 23 (28)
T 2k44_A 17 FLRALRL 23 (28)
T ss_dssp TCTTHHH
T ss_pred HHHHHHc
Confidence 3344443
No 42
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=24.25 E-value=1.1e+02 Score=17.57 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=17.9
Q ss_pred CCcccCCchhHHHHHHHHHHHHHHH
Q psy9473 107 GNVAPNTDNEKIFTILVMLVGCKYE 131 (161)
Q Consensus 107 Gd~~p~t~~e~~~~~~~~l~G~~~~ 131 (161)
---.|.++.|+.+.+..++.+++.-
T Consensus 29 P~~~~~s~~E~aigltv~f~~~L~P 53 (70)
T 2y69_M 29 PAKTPTSPKEQAIGLSVTFLSFLLP 53 (70)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4457788899998777666666554
No 43
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=22.74 E-value=1.6e+02 Score=21.93 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhh
Q psy9473 30 GAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLD 67 (161)
Q Consensus 30 ~~~~l~~~~~~~~~~~h~~aci~~~i~~~~~~~~~w~~ 67 (161)
....++-++++.++++-+.+|+|.++...+.....|-+
T Consensus 34 ~~IllFYliFY~~La~lF~~~m~v~l~tl~~~~Pk~q~ 71 (305)
T 2zxe_B 34 FKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKYQD 71 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCSCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcccc
Confidence 34446777888899999999999998877665455554
No 44
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=22.26 E-value=3e+02 Score=21.97 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhhcccccCC------cccCCchhHHHHHHHHHHHHH
Q psy9473 90 YVTALYFTFSSLTSVGFGN------VAPNTDNEKIFTILVMLVGCK 129 (161)
Q Consensus 90 y~~s~y~a~~tlttvGyGd------~~p~t~~e~~~~~~~~l~G~~ 129 (161)
..+++.=+++++.++|-|- ...-++.+|++.++.|++|-+
T Consensus 424 ~~~a~~~v~Sal~nvG~s~G~vg~~~~~L~~~~K~vl~~~M~~GRL 469 (494)
T 3pjz_A 424 ELSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFGRL 469 (494)
T ss_dssp HHHHHHHHHHHTTTCCSCCSSSCCCCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCcccccCCCcccCCHHHHHHHHHHHHHHHh
Confidence 5678888899999998543 234578899999999999964
Done!