RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9473
(161 letters)
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 52.3 bits (126), Expect = 6e-09
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 13/133 (9%)
Query: 2 TTLIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLL--MATFALIAHWLACIWYAIGNAE 59
+ L+ +L+ RLLRL+R+ R+ ++ L + L+ L I+ IG
Sbjct: 56 SGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQ- 114
Query: 60 KSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNV-----APNTD 114
+ N G S Y AL + F +LT+ G+G+V P T
Sbjct: 115 -----LFGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVPGTV 169
Query: 115 NEKIFTILVMLVG 127
KIF ++ +++G
Sbjct: 170 LGKIFFVIFIILG 182
>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel. This family includes the two
membrane helix type ion channels found in bacteria.
Length = 74
Score = 47.2 bits (113), Expect = 5e-08
Identities = 17/39 (43%), Positives = 31/39 (79%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
++ ALYF+F +LT++G+G++ P TD ++FTI+ +L+G
Sbjct: 25 FLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGI 63
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 48.3 bits (115), Expect = 3e-07
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 1 TTTLIGLLKTARLLRL----VRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIG 56
+ +L+GLL+ RL R+ R+ + I R+S + LL T L+ H C++Y I
Sbjct: 167 SYSLLGLLRFWRLRRVKQLFTRLEKDI-RFSYFWIRCARLLSVTLFLV-HCAGCLYYLIA 224
Query: 57 N----AEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPN 112
+ K+ +G ++ N S+ RY++A+Y++ +++T+VG+G++
Sbjct: 225 DRYPHQGKTWIG--AVIPNFRET---------SLWIRYISAIYWSITTMTTVGYGDLHAV 273
Query: 113 TDNEKIFTILVML 125
E IF I ML
Sbjct: 274 NTIEMIFIIFYML 286
>gnl|CDD|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional.
Length = 393
Score = 38.1 bits (89), Expect = 9e-04
Identities = 13/37 (35%), Positives = 29/37 (78%)
Query: 91 VTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
TA YF+ ++++VG+G++ P +++ ++FTI V+++G
Sbjct: 170 STAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILG 206
>gnl|CDD|235414 PRK05331, PRK05331, putative phosphate acyltransferase;
Provisional.
Length = 334
Score = 28.5 bits (65), Expect = 1.3
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 11 ARLLR--LVRVARKIDRYSEYGAAVLL 35
A LL+ L R+ +K+D EYG AVLL
Sbjct: 265 ALLLKPALKRLKKKLD-PREYGGAVLL 290
>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional.
Length = 183
Score = 28.3 bits (63), Expect = 1.3
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 79 NGTGGPSIKSRYVTALYFTFSSLTS--VGFGNVAPNTDNEKIFTILV 123
NGTGG SI R T F + N PNT+ + F V
Sbjct: 89 NGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTV 135
>gnl|CDD|221200 pfam11743, DUF3301, Protein of unknown function (DUF3301). This
family is conserved in Proteobacteria, but the function
is not known.
Length = 97
Score = 25.9 bits (58), Expect = 5.3
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 20/79 (25%)
Query: 34 LLLLMATFALIAHWLACIWYAIGNAE-----------KSSVGWLDILANDTH-QFYINGT 81
LLLL+ + A W W E K + LD + +
Sbjct: 2 LLLLLLLAFVAALW----WQQRKQRERALQAARRYCKKLDLQLLDDAVALRRLRLKRDAR 57
Query: 82 GGPSIKSRYVTALYFTFSS 100
G ++ Y+ F FSS
Sbjct: 58 GRLRLRRVYL----FEFSS 72
>gnl|CDD|129286 TIGR00182, plsX, fatty acid/phospholipid synthesis protein PlsX.
This protein of fatty acid/phospholipid biosynthesis,
called PlsX after the member in Streptococcus
pneumoniae, is proposed to be a phosphate
acyltransferase that partners with PlsY (TIGR00023) in a
two-step 1-acylglycerol-3-phosphate biosynthesis pathway
alternative to the one-step PlsB (EC 2.3.1.15) pathway
[Fatty acid and phospholipid metabolism, Biosynthesis].
Length = 322
Score = 26.6 bits (59), Expect = 7.0
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 16 LVRVARKIDRYSEYGAAVLLLLMATFALIAH 46
L + +K D Y+ YG AVL L + +H
Sbjct: 259 LKSLKQKFD-YANYGGAVLFGLNKL-VIKSH 287
>gnl|CDD|183147 PRK11465, PRK11465, putative mechanosensitive channel protein;
Provisional.
Length = 741
Score = 26.7 bits (59), Expect = 7.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 19 VARKIDRYSEYGAAVLLLLMATFALIAHWLACIWY 53
+ + + +E A L + FAL+ HWLA ++
Sbjct: 321 ITQHLLNLAERSLAFFSLFIRAFALVWHWLASAYF 355
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.421
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,134,242
Number of extensions: 727567
Number of successful extensions: 1050
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 38
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)