RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9473
(161 letters)
>1ujl_A Potassium voltage-gated channel subfamily H member 2; two
helices, amphiphatic helix, membrane protein; NMR
{Synthetic} SCOP: j.12.1.1
Length = 42
Score = 59.1 bits (143), Expect = 4e-13
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 54 AIGNAEKSS----VGWLDILANDTHQFYI-NGTGGPSIKSRY 90
AIGN E+ +GWL L + + Y +G GGPSIK +Y
Sbjct: 1 AIGNMEQPHMDSRIGWLHNLGDQIGKPYNSSGLGGPSIKDKY 42
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 50.3 bits (120), Expect = 1e-08
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142
+ ALYF+ +LT+VG GN +P TD K+FTIL + +G +H +
Sbjct: 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNV 105
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 47.9 bits (114), Expect = 3e-08
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142
R + ALYF+ +LT+VG+G+ +P TD KIFTIL + +G +H +
Sbjct: 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV 85
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 47.2 bits (112), Expect = 7e-08
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 89 RYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142
R + ALYF+ +LT+VG GN +P TD KIFTIL + +G +H +
Sbjct: 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV 102
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 47.8 bits (114), Expect = 2e-07
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P+T FT+ ++++G
Sbjct: 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLG 83
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 45.0 bits (107), Expect = 3e-07
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ +LY+TF ++ +VG+G+ +P+T FT ++++G
Sbjct: 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLG 66
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 42.1 bits (99), Expect = 2e-05
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 15/123 (12%)
Query: 7 LLKTARLLRLVRVAR--KIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVG 64
LL + L K R S +L A A L + G
Sbjct: 90 LLDGSPDWSLYCAVWLLKPLRDST----FFPVLGRVLANEARNLIGVTTLFGVV------ 139
Query: 65 WLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVM 124
+ A + I P A+++ +L++ G+G+ P + ++ VM
Sbjct: 140 ---LFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVM 196
Query: 125 LVG 127
+ G
Sbjct: 197 MSG 199
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 41.1 bits (97), Expect = 4e-05
Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 4 LIGLLKTARLLRLVRVAR--KIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKS 61
+ G L L RLVR+ R +I G+ L + I ++ A+
Sbjct: 89 IEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIR--FYHLFGAVM----- 141
Query: 62 SVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTI 121
L +L + + S AL++ + T+VG+G+V P T K+ I
Sbjct: 142 ----LTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGI 197
Query: 122 LVMLVG 127
VML G
Sbjct: 198 AVMLTG 203
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 38.2 bits (88), Expect = 5e-04
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 23/110 (20%)
Query: 33 VLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVT 92
L A F + A ++ I P V
Sbjct: 63 FFASLAALFVVNNTLFALLYQLGDAP-------------------IANQSPPGF----VG 99
Query: 93 ALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142
A +F+ +L +VG+G++ P T L + VG + + A
Sbjct: 100 AFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF 149
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 37.2 bits (86), Expect = 8e-04
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 24/120 (20%)
Query: 8 LKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLD 67
+ + L RLV++ + A + ++ A A + +
Sbjct: 10 MLSGLLARLVKLLLGRHGSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLI--- 66
Query: 68 ILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ AL+++ + T+VG+G++ P T ++ ++VM+ G
Sbjct: 67 -----------------TYPR----ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAG 105
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 37.7 bits (87), Expect = 8e-04
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 23/110 (20%)
Query: 33 VLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVT 92
+ L+ + + A + A G+ I S
Sbjct: 49 FITLITGLYLVTNALFALAYLACGD-------------------VIENARPGSFTD---- 85
Query: 93 ALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142
A +F+ ++ ++G+G + P L L G + A A
Sbjct: 86 AFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 36.6 bits (84), Expect = 0.002
Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 32/138 (23%)
Query: 14 LRLVRVARKIDRYSE--YGAAV-------LLLLMATFALIAHWLACIWYAIGNAEKSSVG 64
++ + + RY + V + L F L+ A ++
Sbjct: 17 VQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPI----- 71
Query: 65 WLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVM 124
+ + A +F+ +L +VG+G++ P T L +
Sbjct: 72 ------------------ANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEI 113
Query: 125 LVGCKYESSAMHAFIAEM 142
VG + A +M
Sbjct: 114 FVGMSSIALATGCAFIKM 131
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 36.6 bits (84), Expect = 0.002
Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 12/121 (9%)
Query: 33 VLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVT 92
LL+ + + + + IW+ I D+ H + T + + +V+
Sbjct: 45 NLLIFVMVYTVTWLFFGMIWWLIAYI------RGDMD----HIEDPSWTPCVTNLNGFVS 94
Query: 93 ALYFTFSSLTSVGFGNVAPNTD--NEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHCK 150
A F+ + T++G+G I ++ ++G + + ++ +
Sbjct: 95 AFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRAE 154
Query: 151 R 151
Sbjct: 155 T 155
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 36.3 bits (83), Expect = 0.002
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNE-------KIFTILVMLVG 127
++ + YF F SL+++G G+ P KI +L+G
Sbjct: 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLG 246
Score = 30.6 bits (68), Expect = 0.18
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
+ +AL+F + L++ G+G+ P +D K F I+ ++G
Sbjct: 94 FTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGI 132
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 35.1 bits (81), Expect = 0.002
Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 24/120 (20%)
Query: 8 LKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLD 67
+ + L RLV++ + + A + ++ A A + +
Sbjct: 4 MLSGLLARLVKLLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLI--- 60
Query: 68 ILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
+ AL++ + T+V +G++ P T ++ ++VM+ G
Sbjct: 61 -----------------TYPR----ALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAG 99
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 36.2 bits (83), Expect = 0.003
Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 35/139 (25%)
Query: 1 TTTLIGLLKTARLLRLVRVAR--KIDRYS----EYGAAV------LLLLMATFALIAHWL 48
+ + ++ R++R+ R K+ R+S G + L LL+ +
Sbjct: 298 VLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILF 357
Query: 49 ACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGN 108
+ Y AE + PSI A ++ S+T+VG+G+
Sbjct: 358 SSAVYF---AEADE----------------RDSQFPSI----PDAFWWAVVSMTTVGYGD 394
Query: 109 VAPNTDNEKIFTILVMLVG 127
+ P T KI L + G
Sbjct: 395 MVPTTIGGKIVGSLCAIAG 413
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 34.3 bits (79), Expect = 0.003
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 93 ALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
A++++ + T+VG+G+ P T+ + VM G
Sbjct: 44 AIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAG 78
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 34.5 bits (79), Expect = 0.005
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 93 ALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVG 127
AL+++ + T+VG+G++ P T ++ ++VM+ G
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAG 78
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 34.4 bits (79), Expect = 0.005
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 21/124 (16%)
Query: 4 LIGLLKTARLLRLVRVARKIDRYSEYGAAVLLLLMATFALIAHWLACIWYAIGNAEKSSV 63
LI + L R+ + LLL AL +
Sbjct: 20 LIKHMPPMLSGLLARLVK------------LLLGRHGSALHWRAAGAATVLLV------- 60
Query: 64 GWLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILV 123
+ +LA + Y AL+++ + T+VG+G++ P T + ++V
Sbjct: 61 --IVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVV 118
Query: 124 MLVG 127
M+ G
Sbjct: 119 MVAG 122
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 34.4 bits (78), Expect = 0.010
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 87 KSRYVTALYFTFSSLTSVGFGNVAPNTDNE------KIFTILVMLVG 127
+ A+YF +LT+VGFG+ D + +L+G
Sbjct: 222 DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLG 268
Score = 33.7 bits (76), Expect = 0.020
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 90 YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEMGHIIPHC 149
+A +F+ + +T++G+GNVA TD ++F I LVG +A +G +
Sbjct: 116 LGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGI----PLFGILLAGVGDRLGSS 171
Query: 150 KR 151
R
Sbjct: 172 LR 173
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 34.0 bits (77), Expect = 0.013
Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 33 VLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVT 92
+LLL F + I++ I + +DT + + G +V
Sbjct: 47 MLLLFSLAFLVSWLLFGLIFWLIALIHG---DLENPGGDDTFKPCVLQVNG------FVA 97
Query: 93 ALYFTFSSLTSVGFGN--VAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142
A F+ + T++G+G V ++ +VGC +S + A +A+M
Sbjct: 98 AFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKM 149
>1kxl_A Cell division control protein 13; DNA-binding domain, telomere,
single-stranded DNA, OB fold, cell cycle; NMR
{Saccharomyces cerevisiae} SCOP: b.40.4.3 PDB: 1s40_A
Length = 199
Score = 29.3 bits (65), Expect = 0.38
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 106 FGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFI 139
F + +T K T+ MLV C ++ A +F+
Sbjct: 15 FCQLGLDTFETKYITMFGMLVSCSFDKPAFISFV 48
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 26.7 bits (59), Expect = 3.7
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 123 VMLVGCKYESSAMHAFIAEMGHIIPHCKRGPEQLG 157
V+ V + + +++ H++ C+ +G
Sbjct: 148 VLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVG 182
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein
structure initiative, NE consortium on membrane protein
structure; 3.51A {Vibrio parahaemolyticus}
Length = 494
Score = 26.0 bits (58), Expect = 5.9
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 91 VTALYFTFSSLTSVG--FGNVAPN----TDNEKIFTILVMLVG 127
++A ++L ++G G VA + D K I+ ML G
Sbjct: 425 LSAFSAVAATLNNLGPGLGEVALHFGDVNDKAKWVLIVSMLFG 467
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, unknown function; HET: MSE; 2.95A {Bacillus
subtilis} SCOP: c.77.1.4
Length = 345
Score = 25.6 bits (57), Expect = 7.7
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 11 ARLLR--LVRVARKIDRYSEYGAAVLL 35
A +L+ L + K++ YS YG A L
Sbjct: 262 AAVLKPKLKEMKMKME-YSNYGGASLF 287
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 25.6 bits (57), Expect = 8.9
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 77 YINGTGGPSIKSRY-----VTALYFTFSSLTS 103
Y I R+ T T + +
Sbjct: 53 YRASNLESGIPDRFSGSGSRTDFTLTIDPVEA 84
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Length = 566
Score = 25.6 bits (57), Expect = 9.4
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 8 LKTARLLRLVRVARKIDRYSEYGAAVLLLLM 38
+ L + + +K YG +++LLM
Sbjct: 415 VDEEELEMKINLLKK------YGGTLIVLLM 439
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.421
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,418,617
Number of extensions: 131382
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 39
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)