RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9473
         (161 letters)



>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
           {Archaeon Methanothermobacter thermautotrophicus [TaxId:
           145262]}
          Length = 80

 Score = 46.6 bits (111), Expect = 2e-08
 Identities = 12/39 (30%), Positives = 27/39 (69%)

Query: 90  YVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
           +  +LY+TF ++ +VG+G+ +P+T     FT+ ++++G 
Sbjct: 28  WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGI 66


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 36.9 bits (85), Expect = 2e-04
 Identities = 14/109 (12%), Positives = 33/109 (30%), Gaps = 23/109 (21%)

Query: 34  LLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVTA 93
           + L+   + +     A  + A G+  +++                           +  A
Sbjct: 28  ITLITGLYLVTNALFALAYLACGDVIENARPG-----------------------SFTDA 64

Query: 94  LYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142
            +F+  ++ ++G+G + P          L  L G    + A     A  
Sbjct: 65  FFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 113


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 23/110 (20%)

Query: 33  VLLLLMATFALIAHWLACIWYAIGNAEKSSVGWLDILANDTHQFYINGTGGPSIKSRYVT 92
               L A F +     A ++                         I     P     +V 
Sbjct: 28  FFASLAALFVVNNTLFALLYQLGDAP-------------------IANQSPPG----FVG 64

Query: 93  ALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFIAEM 142
           A +F+  +L +VG+G++ P T        L + VG    + +     A  
Sbjct: 65  AFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARF 114


>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 103

 Score = 34.9 bits (80), Expect = 8e-04
 Identities = 12/53 (22%), Positives = 25/53 (47%)

Query: 76  FYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVMLVGC 128
                    +    Y  AL+++  + T+VG+G++ P T   +   ++VM+ G 
Sbjct: 27  VLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 79


>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 187

 Score = 26.4 bits (58), Expect = 1.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 106 FGNVAPNTDNEKIFTILVMLVGCKYESSAMHAFI 139
           F  +  +T   K  T+  MLV C ++  A  +F+
Sbjct: 11  FCQLGLDTFETKYITMFGMLVSCSFDKPAFISFV 44


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 25.2 bits (55), Expect = 5.0
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 39  ATFALIAHWLACIWYAIGNAEKSSV---GWL-DILANDTHQFYINGTGGPSIKSRYVTAL 94
            TF      L      +    +SS    GWL D L  ++ Q  ING       +  V A 
Sbjct: 596 VTFYWHWKHLGVWEGNVAQFNESSTYLMGWLRDYLWLNSSQL-INGYNPFGTNNLSVWAW 654

Query: 95  YFTFSSL 101
            F F  L
Sbjct: 655 MFLFGHL 661


>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 217

 Score = 24.7 bits (53), Expect = 5.2
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 65  WLDILANDTHQFYINGTGGPSIKSRYVTALYFTFSSLTSVGFGNVAPNTDNEKIFTILVM 124
           W+ IL+   H   +     P     +   +YF   S  S  +   +   +   +    V 
Sbjct: 71  WVGILS---HGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVA 127

Query: 125 LVGCKYESSAMH 136
           L  C     A  
Sbjct: 128 LGQCNELLEANP 139


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 24.8 bits (54), Expect = 5.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 29  YGAAVLLLLMATFALIAHWL 48
           Y  A+  L+MA   L A W 
Sbjct: 147 YCTAIGGLVMAGLMLFAGWF 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 580,038
Number of extensions: 23513
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 11
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.0 bits)