Query psy9478
Match_columns 71
No_of_seqs 167 out of 1263
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:24:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2272 PnbA Carboxylesterase 99.8 8.4E-19 1.8E-23 116.9 5.4 66 4-69 76-147 (491)
2 PF00135 COesterase: Carboxyle 99.8 2.7E-19 5.9E-24 118.6 2.4 66 4-69 105-178 (535)
3 KOG1515|consensus 99.7 4.4E-17 9.5E-22 105.4 4.7 54 15-68 88-144 (336)
4 cd00312 Esterase_lipase Estera 99.6 1.3E-15 2.8E-20 101.4 5.7 62 4-67 75-145 (493)
5 KOG4389|consensus 99.6 1E-15 2.2E-20 102.6 3.7 66 3-68 116-187 (601)
6 KOG1516|consensus 99.6 3.7E-15 8.1E-20 100.3 4.7 53 17-69 112-166 (545)
7 COG0657 Aes Esterase/lipase [L 99.5 8.8E-15 1.9E-19 92.9 3.3 58 12-69 74-132 (312)
8 PRK10162 acetyl esterase; Prov 99.4 2.8E-13 6.2E-18 86.7 4.0 54 15-68 79-133 (318)
9 PF07859 Abhydrolase_3: alpha/ 99.3 3.9E-13 8.4E-18 80.7 0.1 47 20-66 1-48 (211)
10 KOG4388|consensus 98.8 5.2E-09 1.1E-13 72.3 3.4 56 16-71 395-451 (880)
11 KOG4627|consensus 98.7 2.1E-08 4.4E-13 62.1 4.5 48 14-61 64-111 (270)
12 PF10340 DUF2424: Protein of u 98.1 3E-06 6.4E-11 56.1 2.8 44 16-59 121-166 (374)
13 TIGR01840 esterase_phb esteras 97.9 1.1E-05 2.5E-10 48.8 2.9 44 14-57 10-53 (212)
14 COG1506 DAP2 Dipeptidyl aminop 97.7 7.4E-05 1.6E-09 52.0 5.2 45 13-58 390-434 (620)
15 PF03403 PAF-AH_p_II: Platelet 97.4 0.00021 4.6E-09 47.3 3.2 42 15-59 98-139 (379)
16 PRK10566 esterase; Provisional 97.2 0.00072 1.6E-08 41.3 4.0 41 14-57 24-64 (249)
17 PLN00021 chlorophyllase 96.9 0.0015 3.3E-08 42.3 4.0 41 13-56 48-88 (313)
18 PRK10115 protease 2; Provision 96.9 0.0026 5.7E-08 45.0 5.0 45 14-59 442-486 (686)
19 PLN02442 S-formylglutathione h 96.8 0.0013 2.8E-08 41.8 2.8 44 13-56 43-86 (283)
20 KOG3847|consensus 96.5 0.0032 6.9E-08 41.6 3.3 44 13-59 114-157 (399)
21 PF12695 Abhydrolase_5: Alpha/ 96.3 0.0025 5.3E-08 35.6 1.7 38 19-59 1-38 (145)
22 PF10503 Esterase_phd: Esteras 96.0 0.0052 1.1E-07 38.2 2.2 41 15-56 14-55 (220)
23 TIGR03101 hydr2_PEP hydrolase, 96.0 0.009 1.9E-07 38.0 3.1 42 15-56 23-65 (266)
24 PLN02385 hydrolase; alpha/beta 95.9 0.01 2.3E-07 38.3 3.4 39 15-56 85-124 (349)
25 TIGR02821 fghA_ester_D S-formy 95.9 0.013 2.8E-07 36.9 3.6 40 14-56 39-81 (275)
26 PLN02298 hydrolase, alpha/beta 95.9 0.02 4.4E-07 36.5 4.4 39 15-56 57-96 (330)
27 PF03991 Prion_octapep: Copper 95.7 0.0041 8.9E-08 19.3 0.3 6 24-29 2-7 (8)
28 TIGR03100 hydr1_PEP hydrolase, 95.4 0.024 5.2E-07 35.7 3.6 39 18-56 27-66 (274)
29 PHA02857 monoglyceride lipase; 95.4 0.026 5.7E-07 34.9 3.6 40 14-56 22-61 (276)
30 PLN02211 methyl indole-3-aceta 95.1 0.042 9.1E-07 34.6 3.9 41 13-56 14-54 (273)
31 PRK10985 putative hydrolase; P 94.9 0.049 1.1E-06 35.0 3.8 39 15-56 56-96 (324)
32 PF12146 Hydrolase_4: Putative 94.6 0.043 9.3E-07 28.8 2.5 38 16-56 15-52 (79)
33 PLN02652 hydrolase; alpha/beta 94.5 0.032 7E-07 37.2 2.4 40 14-56 133-172 (395)
34 PF12740 Chlorophyllase2: Chlo 94.0 0.053 1.2E-06 34.6 2.5 39 13-54 13-51 (259)
35 PRK00870 haloalkane dehalogena 94.0 0.082 1.8E-06 33.3 3.4 37 17-56 46-82 (302)
36 TIGR01250 pro_imino_pep_2 prol 93.5 0.091 2E-06 31.7 2.8 39 16-56 24-62 (288)
37 TIGR03695 menH_SHCHC 2-succiny 93.3 0.092 2E-06 30.8 2.5 35 18-56 2-36 (251)
38 TIGR00976 /NonD putative hydro 93.2 0.25 5.4E-06 34.2 4.8 43 14-56 19-62 (550)
39 KOG3101|consensus 92.4 0.27 5.9E-06 31.2 3.8 60 10-71 37-96 (283)
40 TIGR03611 RutD pyrimidine util 92.4 0.19 4.2E-06 29.9 3.1 38 15-56 11-48 (257)
41 cd00707 Pancreat_lipase_like P 92.1 0.15 3.3E-06 32.3 2.5 43 13-58 32-77 (275)
42 KOG1455|consensus 92.1 0.27 5.8E-06 32.3 3.6 45 10-56 47-91 (313)
43 PRK10749 lysophospholipase L2; 92.0 0.17 3.6E-06 32.6 2.6 39 15-56 52-90 (330)
44 PF06342 DUF1057: Alpha/beta h 91.9 0.84 1.8E-05 29.8 5.7 55 12-71 30-84 (297)
45 TIGR03343 biphenyl_bphD 2-hydr 91.9 0.11 2.5E-06 31.9 1.7 40 17-56 30-69 (282)
46 PLN02511 hydrolase 91.7 0.37 8E-06 32.0 4.0 40 15-56 98-138 (388)
47 COG4099 Predicted peptidase [G 91.6 0.17 3.8E-06 33.5 2.3 19 12-30 185-204 (387)
48 PRK05077 frsA fermentation/res 91.5 0.27 5.8E-06 33.1 3.2 40 14-56 191-231 (414)
49 PLN02965 Probable pheophorbida 91.5 0.31 6.7E-06 29.9 3.3 35 19-56 5-39 (255)
50 PLN02872 triacylglycerol lipas 91.2 0.33 7.2E-06 32.6 3.4 44 15-58 72-118 (395)
51 PF05448 AXE1: Acetyl xylan es 91.0 0.25 5.3E-06 32.3 2.7 40 13-56 79-118 (320)
52 PRK10673 acyl-CoA esterase; Pr 90.6 0.31 6.6E-06 29.5 2.7 40 13-56 12-51 (255)
53 TIGR02427 protocat_pcaD 3-oxoa 90.3 0.54 1.2E-05 27.6 3.5 37 16-56 12-48 (251)
54 PF12697 Abhydrolase_6: Alpha/ 89.4 0.33 7.1E-06 28.0 2.0 33 20-56 1-33 (228)
55 KOG2100|consensus 89.0 0.94 2E-05 33.0 4.4 49 11-59 520-570 (755)
56 PLN02894 hydrolase, alpha/beta 88.9 0.54 1.2E-05 31.4 3.0 38 15-56 103-140 (402)
57 TIGR01738 bioH putative pimelo 88.5 0.66 1.4E-05 27.2 3.0 36 17-56 4-39 (245)
58 PF12715 Abhydrolase_7: Abhydr 88.4 1.1 2.5E-05 30.3 4.2 43 14-56 112-169 (390)
59 TIGR03056 bchO_mg_che_rel puta 88.2 0.52 1.1E-05 28.6 2.4 37 16-56 27-63 (278)
60 PF07082 DUF1350: Protein of u 88.1 0.6 1.3E-05 29.8 2.7 40 19-58 18-58 (250)
61 TIGR03502 lipase_Pla1_cef extr 87.3 0.67 1.5E-05 34.0 2.8 38 16-56 448-485 (792)
62 COG3509 LpqC Poly(3-hydroxybut 87.1 1 2.2E-05 29.6 3.3 40 14-53 58-97 (312)
63 PRK03592 haloalkane dehalogena 86.9 0.63 1.4E-05 29.1 2.3 36 17-56 27-62 (295)
64 PRK05855 short chain dehydroge 86.9 0.58 1.3E-05 31.7 2.3 37 16-56 24-60 (582)
65 PRK07581 hypothetical protein; 86.8 0.87 1.9E-05 29.2 2.9 41 16-56 40-80 (339)
66 PF01738 DLH: Dienelactone hyd 86.8 0.39 8.5E-06 28.9 1.3 39 15-56 12-50 (218)
67 PRK10439 enterobactin/ferric e 86.4 0.59 1.3E-05 31.5 2.1 41 14-55 206-249 (411)
68 PF00756 Esterase: Putative es 86.0 0.3 6.6E-06 29.8 0.5 19 12-30 19-38 (251)
69 PRK03204 haloalkane dehalogena 86.0 0.62 1.3E-05 29.3 1.9 36 17-56 34-69 (286)
70 PF02129 Peptidase_S15: X-Pro 85.7 1.4 3.1E-05 27.6 3.5 51 11-65 14-71 (272)
71 PRK11126 2-succinyl-6-hydroxy- 84.8 0.66 1.4E-05 27.9 1.6 35 17-56 2-36 (242)
72 PRK10349 carboxylesterase BioH 84.7 1.3 2.7E-05 27.0 2.9 36 17-56 13-48 (256)
73 PLN02679 hydrolase, alpha/beta 84.5 1.1 2.4E-05 29.3 2.7 36 17-56 88-123 (360)
74 PF11144 DUF2920: Protein of u 84.5 0.98 2.1E-05 30.7 2.4 40 15-56 32-74 (403)
75 PF07224 Chlorophyllase: Chlor 83.9 0.9 2E-05 29.6 1.9 41 13-56 42-82 (307)
76 KOG4391|consensus 83.9 2 4.3E-05 27.6 3.4 41 13-56 74-115 (300)
77 PRK14875 acetoin dehydrogenase 83.5 1.8 4E-05 27.7 3.3 37 16-56 130-166 (371)
78 PRK13604 luxD acyl transferase 82.6 1.9 4.1E-05 28.3 3.1 41 14-57 34-74 (307)
79 TIGR01836 PHA_synth_III_C poly 82.1 4 8.7E-05 26.5 4.5 38 19-57 64-104 (350)
80 PF02230 Abhydrolase_2: Phosph 81.5 1.3 2.8E-05 26.8 2.0 19 11-29 8-26 (216)
81 PRK06489 hypothetical protein; 81.2 3.1 6.8E-05 27.1 3.8 38 17-56 69-114 (360)
82 PLN03084 alpha/beta hydrolase 80.5 2 4.3E-05 28.8 2.7 37 16-56 126-162 (383)
83 KOG2564|consensus 79.4 2.7 5.8E-05 27.8 2.9 41 13-56 70-111 (343)
84 TIGR02240 PHA_depoly_arom poly 79.2 2.1 4.5E-05 26.5 2.4 36 17-56 25-60 (276)
85 TIGR01249 pro_imino_pep_1 prol 78.6 4.4 9.6E-05 25.6 3.8 36 17-56 27-62 (306)
86 PLN02824 hydrolase, alpha/beta 77.7 2.8 6.1E-05 26.1 2.7 36 17-56 29-64 (294)
87 COG0412 Dienelactone hydrolase 77.6 4 8.8E-05 25.4 3.3 36 17-55 27-62 (236)
88 COG1647 Esterase/lipase [Gener 76.3 2.3 5.1E-05 27.0 2.0 46 18-66 16-64 (243)
89 PRK11460 putative hydrolase; P 76.3 2.8 6.2E-05 25.8 2.4 38 14-54 13-52 (232)
90 KOG2281|consensus 76.0 6.3 0.00014 29.0 4.2 48 11-58 636-687 (867)
91 PF00326 Peptidase_S9: Prolyl 75.5 2.9 6.2E-05 24.9 2.2 22 38-59 5-26 (213)
92 TIGR02806 clostrip clostripain 73.9 2.7 5.8E-05 29.2 1.9 19 13-31 111-129 (476)
93 COG0429 Predicted hydrolase of 73.5 4.2 9E-05 27.2 2.7 44 10-56 68-113 (345)
94 KOG3967|consensus 71.8 9.4 0.0002 24.5 3.8 16 16-31 100-115 (297)
95 PF04083 Abhydro_lipase: Parti 71.4 4.6 9.9E-05 20.3 2.0 15 12-26 38-52 (63)
96 PTZ00472 serine carboxypeptida 70.0 4.2 9.2E-05 27.9 2.2 14 13-26 73-86 (462)
97 COG2382 Fes Enterochelin ester 70.0 4.9 0.00011 26.4 2.4 44 12-56 93-139 (299)
98 TIGR03230 lipo_lipase lipoprot 69.6 6.3 0.00014 27.2 2.9 42 15-57 39-83 (442)
99 COG4188 Predicted dienelactone 69.1 11 0.00023 25.6 3.8 43 15-60 69-111 (365)
100 PLN03087 BODYGUARD 1 domain co 68.3 5.9 0.00013 27.5 2.6 37 17-56 201-241 (481)
101 PF00450 Peptidase_S10: Serine 66.4 4.4 9.6E-05 26.5 1.7 14 13-26 36-49 (415)
102 PF00151 Lipase: Lipase; Inte 65.3 4 8.7E-05 26.9 1.3 47 13-59 67-116 (331)
103 COG0400 Predicted esterase [Ge 65.3 7.8 0.00017 23.9 2.5 17 11-27 12-28 (207)
104 PF03415 Peptidase_C11: Clostr 64.5 2 4.3E-05 29.0 -0.2 16 14-29 96-111 (397)
105 PF14041 Lipoprotein_21: LppP/ 63.5 8.6 0.00019 20.4 2.2 40 16-56 24-63 (89)
106 cd07036 TPP_PYR_E1-PDHc-beta_l 60.2 26 0.00057 20.8 4.1 41 14-54 101-142 (167)
107 PF05990 DUF900: Alpha/beta hy 59.2 8.2 0.00018 24.0 1.9 17 14-30 15-31 (233)
108 TIGR01607 PST-A Plasmodium sub 59.0 19 0.00042 23.3 3.6 18 39-56 66-83 (332)
109 PLN02578 hydrolase 58.7 10 0.00022 24.6 2.4 35 18-56 87-121 (354)
110 KOG1552|consensus 57.9 5.9 0.00013 25.5 1.1 40 14-56 57-97 (258)
111 COG3458 Acetyl esterase (deace 57.1 18 0.0004 23.9 3.2 40 13-56 79-118 (321)
112 PF02089 Palm_thioest: Palmito 57.0 8.2 0.00018 25.1 1.6 41 14-55 3-45 (279)
113 PF10142 PhoPQ_related: PhoPQ- 56.7 26 0.00056 23.7 4.0 41 14-54 61-105 (367)
114 COG2267 PldB Lysophospholipase 55.8 12 0.00026 24.1 2.3 36 18-56 35-70 (298)
115 PF01674 Lipase_2: Lipase (cla 49.7 26 0.00056 21.9 3.0 37 20-59 4-44 (219)
116 COG2945 Predicted hydrolase of 49.0 43 0.00092 21.0 3.8 44 14-57 25-70 (210)
117 KOG1838|consensus 48.7 25 0.00054 24.2 3.0 41 14-56 122-163 (409)
118 cd02421 Peptidase_C39_likeD A 47.0 19 0.00042 19.4 2.0 18 13-30 66-83 (124)
119 PF12048 DUF3530: Protein of u 46.4 27 0.00059 22.8 2.8 46 12-57 82-127 (310)
120 COG3727 Vsr DNA G:T-mismatch r 46.4 16 0.00035 21.5 1.6 15 16-30 56-70 (150)
121 PLN02200 adenylate kinase fami 46.0 39 0.00085 21.0 3.4 36 13-53 38-74 (234)
122 PF07819 PGAP1: PGAP1-like pro 46.0 29 0.00063 21.5 2.8 40 17-59 4-51 (225)
123 KOG4153|consensus 44.4 20 0.00043 23.6 1.9 15 13-27 253-267 (358)
124 COG2939 Carboxypeptidase C (ca 43.7 22 0.00047 25.2 2.1 15 12-26 96-110 (498)
125 PF04443 LuxE: Acyl-protein sy 43.7 14 0.0003 24.8 1.2 16 19-34 222-237 (365)
126 KOG1282|consensus 43.6 22 0.00049 24.7 2.2 17 13-29 69-85 (454)
127 KOG2624|consensus 43.3 47 0.001 22.8 3.6 40 15-56 71-115 (403)
128 cd05892 Ig_Myotilin_C C-termin 43.1 22 0.00048 17.9 1.7 17 14-30 9-25 (75)
129 cd03015 PRX_Typ2cys Peroxiredo 43.0 29 0.00063 20.2 2.4 39 16-54 29-70 (173)
130 PF05577 Peptidase_S28: Serine 41.3 7 0.00015 26.2 -0.5 40 17-57 29-69 (434)
131 PF10686 DUF2493: Protein of u 41.2 15 0.00033 18.8 0.9 31 16-51 30-61 (71)
132 PF03283 PAE: Pectinacetyleste 40.9 24 0.00053 23.6 2.0 19 15-33 48-66 (361)
133 PLN02209 serine carboxypeptida 40.9 27 0.00058 24.0 2.2 14 13-26 64-77 (437)
134 PF03852 Vsr: DNA mismatch end 40.7 18 0.0004 19.0 1.1 14 16-29 55-68 (75)
135 PLN03016 sinapoylglucose-malat 39.8 28 0.00061 23.9 2.2 14 13-26 62-75 (433)
136 PF07449 HyaE: Hydrogenase-1 e 39.7 28 0.00061 19.4 1.8 17 15-31 81-97 (107)
137 PRK07868 acyl-CoA synthetase; 39.6 75 0.0016 24.0 4.5 39 16-56 66-108 (994)
138 PLN02980 2-oxoglutarate decarb 39.6 31 0.00067 27.7 2.6 37 16-56 1370-1406(1655)
139 KOG4178|consensus 38.7 51 0.0011 22.0 3.2 37 14-56 41-80 (322)
140 cd02958 UAS UAS family; UAS is 38.4 24 0.00052 19.0 1.5 16 13-28 14-29 (114)
141 TIGR01392 homoserO_Ac_trn homo 38.0 35 0.00075 22.1 2.4 40 17-56 31-81 (351)
142 cd05855 Ig_TrkB_d5 Fifth domai 37.6 15 0.00033 19.0 0.5 20 13-32 8-27 (79)
143 TIGR00632 vsr DNA mismatch end 37.4 28 0.00061 19.8 1.6 15 15-29 54-68 (117)
144 PF00975 Thioesterase: Thioest 37.0 36 0.00078 20.2 2.2 35 19-56 2-36 (229)
145 cd02417 Peptidase_C39_likeA A 36.8 33 0.00071 18.3 1.9 18 13-30 66-83 (121)
146 KOG2948|consensus 36.6 21 0.00046 23.7 1.2 20 15-34 290-309 (327)
147 COG4843 Uncharacterized protei 36.6 12 0.00027 22.2 0.1 11 23-33 163-173 (179)
148 COG0596 MhpC Predicted hydrola 36.2 27 0.00058 19.9 1.5 37 17-56 21-59 (282)
149 COG4286 Uncharacterized conser 35.7 23 0.00049 23.3 1.2 19 16-34 275-293 (306)
150 COG2936 Predicted acyl esteras 35.4 46 0.001 23.9 2.7 44 13-56 41-89 (563)
151 KOG2872|consensus 35.2 69 0.0015 21.5 3.3 35 15-59 250-284 (359)
152 PLN00050 expansin A; Provision 34.9 24 0.00051 22.6 1.2 37 25-61 112-151 (247)
153 PRK11071 esterase YqiA; Provis 34.8 28 0.0006 20.7 1.4 36 18-56 2-41 (190)
154 PRK08775 homoserine O-acetyltr 33.9 67 0.0014 20.7 3.2 12 45-56 97-108 (343)
155 KOG0368|consensus 33.0 31 0.00068 28.1 1.7 31 15-45 1942-1978(2196)
156 PF06184 Potex_coat: Potexviru 32.9 10 0.00022 21.9 -0.6 14 46-59 134-147 (153)
157 PF06309 Torsin: Torsin; Inte 32.7 59 0.0013 18.7 2.5 28 13-45 48-75 (127)
158 PF10021 DUF2263: Uncharacteri 32.6 10 0.00022 22.2 -0.7 12 24-35 89-100 (148)
159 COG0627 Predicted esterase [Ge 32.5 81 0.0017 20.9 3.4 42 13-54 50-91 (316)
160 PF10568 Tom37: Outer mitochon 32.0 68 0.0015 16.3 2.5 22 10-32 43-64 (72)
161 KOG2382|consensus 31.8 55 0.0012 21.8 2.5 40 15-57 50-90 (315)
162 PF13899 Thioredoxin_7: Thiore 31.8 37 0.0008 17.1 1.5 42 14-56 15-61 (82)
163 cd03014 PRX_Atyp2cys Peroxired 31.0 50 0.0011 18.3 2.1 40 16-55 26-66 (143)
164 PRK15000 peroxidase; Provision 30.7 54 0.0012 19.9 2.3 39 16-54 34-75 (200)
165 COG3571 Predicted hydrolase of 30.5 87 0.0019 19.4 3.0 40 15-55 12-51 (213)
166 KOG1454|consensus 30.4 60 0.0013 21.3 2.5 38 15-55 56-94 (326)
167 KOG0264|consensus 30.0 33 0.00071 23.8 1.3 15 14-28 359-373 (422)
168 PF06181 DUF989: Protein of un 29.9 23 0.00049 23.4 0.5 12 19-30 53-64 (300)
169 PF05057 DUF676: Putative seri 29.7 45 0.00098 20.3 1.8 12 15-26 2-13 (217)
170 PF03690 UPF0160: Uncharacteri 29.5 30 0.00066 22.9 1.1 18 17-34 288-305 (318)
171 COG5039 Exopolysaccharide bios 29.5 58 0.0012 21.9 2.3 28 19-46 88-115 (339)
172 KOG2182|consensus 28.3 1.4E+02 0.0029 21.5 4.0 44 14-57 83-128 (514)
173 PF06057 VirJ: Bacterial virul 28.1 83 0.0018 19.5 2.7 33 19-55 5-37 (192)
174 PF07680 DoxA: TQO small subun 27.6 22 0.00048 20.7 0.1 10 22-31 1-10 (133)
175 PLN00193 expansin-A; Provision 27.5 41 0.00089 21.7 1.4 37 25-61 120-159 (256)
176 smart00157 PRP Major prion pro 27.5 30 0.00064 21.6 0.7 28 44-71 93-126 (217)
177 TIGR01838 PHA_synth_I poly(R)- 27.4 1.4E+02 0.0031 21.3 4.0 40 16-57 187-230 (532)
178 PTZ00445 p36-lilke protein; Pr 27.2 29 0.00063 21.9 0.6 40 19-58 53-102 (219)
179 PRK10468 hydrogenase 2 small s 27.2 46 0.001 22.7 1.6 18 15-33 46-63 (371)
180 KOG4840|consensus 27.2 1.6E+02 0.0034 19.3 3.8 47 16-64 35-83 (299)
181 PF12566 DUF3748: Protein of u 26.2 67 0.0014 18.4 1.9 10 18-27 14-23 (122)
182 PF06500 DUF1100: Alpha/beta h 26.2 33 0.00072 23.6 0.8 41 13-56 186-227 (411)
183 PF09757 Arb2: Arb2 domain; I 25.8 23 0.00049 21.1 0.0 17 15-31 97-113 (178)
184 PRK09437 bcp thioredoxin-depen 25.0 89 0.0019 17.6 2.4 40 16-55 30-72 (154)
185 PF08373 RAP: RAP domain; Int 24.7 61 0.0013 15.2 1.4 16 41-56 25-40 (58)
186 PF13227 DUF4035: Protein of u 24.4 34 0.00073 16.8 0.5 8 55-62 4-11 (53)
187 cd05744 Ig_Myotilin_C_like Imm 23.2 74 0.0016 15.7 1.7 18 14-31 9-26 (75)
188 PF01112 Asparaginase_2: Aspar 22.8 35 0.00076 22.6 0.4 14 20-33 4-17 (319)
189 KOG2542|consensus 22.6 45 0.00097 23.3 0.9 14 49-64 180-193 (500)
190 COG2411 Uncharacterized conser 22.6 49 0.0011 20.3 1.0 19 16-34 36-54 (188)
191 PRK03348 DNA polymerase IV; Pr 22.6 94 0.002 21.4 2.5 28 23-62 400-427 (454)
192 smart00837 DPBB_1 Rare lipopro 22.3 1E+02 0.0022 16.4 2.1 30 26-55 55-87 (87)
193 cd03010 TlpA_like_DsbE TlpA-li 22.0 49 0.0011 17.9 0.9 39 16-55 25-63 (127)
194 PF13415 Kelch_3: Galactose ox 21.8 61 0.0013 14.6 1.1 8 21-28 4-11 (49)
195 cd05875 Ig6_hNeurofascin_like 21.7 99 0.0021 15.4 2.0 17 13-29 8-24 (77)
196 TIGR03530 GldJ_short gliding m 21.6 80 0.0017 21.7 2.0 21 15-35 61-81 (402)
197 cd05893 Ig_Palladin_C C-termin 21.6 69 0.0015 16.0 1.3 18 13-30 8-25 (75)
198 TIGR01890 N-Ac-Glu-synth amino 21.4 57 0.0012 22.1 1.3 10 20-29 51-60 (429)
199 PRK10382 alkyl hydroperoxide r 21.4 1E+02 0.0023 18.5 2.3 39 16-54 31-72 (187)
200 cd02425 Peptidase_C39F A sub-f 21.2 84 0.0018 16.7 1.7 18 14-31 73-90 (126)
201 COG1505 Serine proteases of th 20.7 2.4E+02 0.0052 20.9 4.1 42 16-58 420-461 (648)
202 PF09363 XFP_C: XFP C-terminal 20.2 80 0.0017 19.7 1.6 15 15-29 98-112 (203)
203 cd03011 TlpA_like_ScsD_MtbDsbE 20.1 1.6E+02 0.0034 15.6 3.3 37 16-54 20-57 (123)
204 KOG2237|consensus 20.0 86 0.0019 23.2 1.9 46 12-58 465-510 (712)
No 1
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.76 E-value=8.4e-19 Score=116.87 Aligned_cols=66 Identities=41% Similarity=0.718 Sum_probs=56.3
Q ss_pred cccCCc-----cCCCCCCceEEEEEeCCccccCCCCCCCchHHHHhcCC-cEEEEeCCCCCCcccccCCCcc
Q psy9478 4 DTKCQV-----KVAQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKN-VILVTVNYRLGILGHVILSTAL 69 (71)
Q Consensus 4 ~~~~~~-----~~~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g-~~vvsv~YRlap~Gf~~~~~~~ 69 (71)
+|||+. +....+++|||||||||+|..|+.....+....++++| +++|++||||+++|||..++..
T Consensus 76 sEDCL~LNIwaP~~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~ 147 (491)
T COG2272 76 SEDCLYLNIWAPEVPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLD 147 (491)
T ss_pred cccceeEEeeccCCCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhcc
Confidence 566765 22356778999999999999999998889999999995 9999999999999999987543
No 2
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.76 E-value=2.7e-19 Score=118.64 Aligned_cols=66 Identities=42% Similarity=0.848 Sum_probs=42.5
Q ss_pred cccCCc-------cCCCCCCceEEEEEeCCccccCCCCCCCch-HHHHhcCCcEEEEeCCCCCCcccccCCCcc
Q psy9478 4 DTKCQV-------KVAQTTLLPVMVWIHGGGFAYGHGNADAYG-PEFLMNKNVILVTVNYRLGILGHVILSTAL 69 (71)
Q Consensus 4 ~~~~~~-------~~~~~~~~pviv~iHGGg~~~g~~~~~~~~-~~~~~~~g~~vvsv~YRlap~Gf~~~~~~~ 69 (71)
+|||+. ......++||+||||||||..|+.....+. ...++++++++|++||||++||||++++..
T Consensus 105 sEDCL~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~ 178 (535)
T PF00135_consen 105 SEDCLYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLD 178 (535)
T ss_dssp ES---EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTT
T ss_pred CchHHHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccc
Confidence 566655 233334799999999999999999543444 455666799999999999999999998654
No 3
>KOG1515|consensus
Probab=99.68 E-value=4.4e-17 Score=105.42 Aligned_cols=54 Identities=35% Similarity=0.512 Sum_probs=45.5
Q ss_pred CCceEEEEEeCCccccCCCCC--CCchHHHHhcC-CcEEEEeCCCCCCcccccCCCc
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNA--DAYGPEFLMNK-NVILVTVNYRLGILGHVILSTA 68 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~--~~~~~~~~~~~-g~~vvsv~YRlap~Gf~~~~~~ 68 (71)
+++|++||||||||+.|++.. +...+..++++ ++++|+|||||||+--++..-+
T Consensus 88 ~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~~Pa~y~ 144 (336)
T KOG1515|consen 88 TKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHPFPAAYD 144 (336)
T ss_pred cCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCCCCccch
Confidence 789999999999999998665 34456666665 9999999999999999887644
No 4
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.61 E-value=1.3e-15 Score=101.38 Aligned_cols=62 Identities=42% Similarity=0.799 Sum_probs=48.0
Q ss_pred cccCCcc-----C--CCCCCceEEEEEeCCccccCCCCCCCchHHHHhcC-C-cEEEEeCCCCCCcccccCCC
Q psy9478 4 DTKCQVK-----V--AQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-N-VILVTVNYRLGILGHVILST 67 (71)
Q Consensus 4 ~~~~~~~-----~--~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g-~~vvsv~YRlap~Gf~~~~~ 67 (71)
+|+|..- . ...+++|||||||||||..|+.... ....++.+ + ++||+++|||+++||+.+++
T Consensus 75 sEdcl~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~ 145 (493)
T cd00312 75 SEDCLYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGD 145 (493)
T ss_pred CCcCCeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCC
Confidence 5777651 1 1256789999999999999998753 44455544 4 99999999999999998765
No 5
>KOG4389|consensus
Probab=99.59 E-value=1e-15 Score=102.64 Aligned_cols=66 Identities=39% Similarity=0.703 Sum_probs=54.7
Q ss_pred ccccCCc-----cCCCCCCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeCCCCCCcccccCCCc
Q psy9478 3 CDTKCQV-----KVAQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYRLGILGHVILSTA 68 (71)
Q Consensus 3 ~~~~~~~-----~~~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~YRlap~Gf~~~~~~ 68 (71)
++|||++ +.....+.-|+|||.||||..|+++-+.+.++.++.+ +++||++|||++|||||..++.
T Consensus 116 lSEDCLYlNVW~P~~~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~~~ 187 (601)
T KOG4389|consen 116 LSEDCLYLNVWAPAADPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLPGH 187 (601)
T ss_pred cChhceEEEEeccCCCCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecCCC
Confidence 5677765 2123445569999999999999999888999988887 9999999999999999999543
No 6
>KOG1516|consensus
Probab=99.56 E-value=3.7e-15 Score=100.32 Aligned_cols=53 Identities=45% Similarity=0.816 Sum_probs=43.6
Q ss_pred ceEEEEEeCCccccCCCCCC-Cch-HHHHhcCCcEEEEeCCCCCCcccccCCCcc
Q psy9478 17 LPVMVWIHGGGFAYGHGNAD-AYG-PEFLMNKNVILVTVNYRLGILGHVILSTAL 69 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~-~~~-~~~~~~~g~~vvsv~YRlap~Gf~~~~~~~ 69 (71)
+||+||||||+|..|+.... ... ...+..+++++|+++|||+++||+++++++
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~ 166 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSA 166 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCC
Confidence 89999999999999997543 233 344445599999999999999999999765
No 7
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.51 E-value=8.8e-15 Score=92.86 Aligned_cols=58 Identities=21% Similarity=0.348 Sum_probs=46.7
Q ss_pred CCCCCceEEEEEeCCccccCCCCCCCchH-HHHhcCCcEEEEeCCCCCCcccccCCCcc
Q psy9478 12 AQTTLLPVMVWIHGGGFAYGHGNADAYGP-EFLMNKNVILVTVNYRLGILGHVILSTAL 69 (71)
Q Consensus 12 ~~~~~~pviv~iHGGg~~~g~~~~~~~~~-~~~~~~g~~vvsv~YRlap~Gf~~~~~~~ 69 (71)
+...+.|++||+|||||+.|+...+...+ ..++..|++|+++||||+|++-++..-++
T Consensus 74 ~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~~p~~~~d 132 (312)
T COG0657 74 KAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHPFPAALED 132 (312)
T ss_pred CCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCCCCchHHH
Confidence 34456899999999999999999885555 55555699999999999999977765443
No 8
>PRK10162 acetyl esterase; Provisional
Probab=99.40 E-value=2.8e-13 Score=86.70 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=45.1
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeCCCCCCcccccCCCc
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYRLGILGHVILSTA 68 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~YRlap~Gf~~~~~~ 68 (71)
+..|++||+|||||+.|+.+.....++.+++. |+.|+++|||++|..-++...+
T Consensus 79 ~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~~~p~~~~ 133 (318)
T PRK10162 79 DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEARFPQAIE 133 (318)
T ss_pred CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCCCCCCcHH
Confidence 34699999999999999988766677777775 9999999999999886665533
No 9
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.30 E-value=3.9e-13 Score=80.70 Aligned_cols=47 Identities=26% Similarity=0.462 Sum_probs=34.8
Q ss_pred EEEEeCCccccCCCCCCCchHHHHhc-CCcEEEEeCCCCCCcccccCC
Q psy9478 20 MVWIHGGGFAYGHGNADAYGPEFLMN-KNVILVTVNYRLGILGHVILS 66 (71)
Q Consensus 20 iv~iHGGg~~~g~~~~~~~~~~~~~~-~g~~vvsv~YRlap~Gf~~~~ 66 (71)
|||||||||+.|+++.....+..+++ .|+++++++|||+|..-++..
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~~~p~~ 48 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEAPFPAA 48 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTSSTTHH
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccccccccc
Confidence 79999999999999887666777776 699999999999998766543
No 10
>KOG4388|consensus
Probab=98.78 E-value=5.2e-09 Score=72.31 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=46.5
Q ss_pred CceEEEEEeCCccccCCCCCCC-chHHHHhcCCcEEEEeCCCCCCcccccCCCcccC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADA-YGPEFLMNKNVILVTVNYRLGILGHVILSTALRY 71 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~-~~~~~~~~~g~~vvsv~YRlap~Gf~~~~~~~~~ 71 (71)
.+.+++++|||||+.-+.+++. +..++....|+.+++|||.|||+.-|+-+.+|+|
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPEaPFPRaleEv~ 451 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPEAPFPRALEEVF 451 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCCCCCCcHHHHHH
Confidence 4568999999999998888776 5556666669999999999999999998776654
No 11
>KOG4627|consensus
Probab=98.73 E-value=2.1e-08 Score=62.14 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=42.8
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCCcc
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGILG 61 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap~G 61 (71)
+...|++||||||.|..|+.+.......-+.++|+.|++++|-|+|.+
T Consensus 64 ~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q~ 111 (270)
T KOG4627|consen 64 TNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQV 111 (270)
T ss_pred CCCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCccc
Confidence 456689999999999999998777777888888999999999999987
No 12
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.08 E-value=3e-06 Score=56.09 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=31.6
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHh--cCCcEEEEeCCCCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLM--NKNVILVTVNYRLGI 59 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~--~~g~~vvsv~YRlap 59 (71)
..||++|+|||||..+...........+. -....++.+||.|++
T Consensus 121 ~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~~~SILvLDYsLt~ 166 (374)
T PF10340_consen 121 SDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLPEVSILVLDYSLTS 166 (374)
T ss_pred CCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 45999999999999998764322111111 127789999999999
No 13
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=97.90 E-value=1.1e-05 Score=48.79 Aligned_cols=44 Identities=16% Similarity=-0.012 Sum_probs=30.0
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRL 57 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRl 57 (71)
+++.|+||++||++...............+.+.|++|+.+++|-
T Consensus 10 ~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g 53 (212)
T TIGR01840 10 TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTS 53 (212)
T ss_pred CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcC
Confidence 35689999999998754432211223444445699999999985
No 14
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.74 E-value=7.4e-05 Score=52.02 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=34.2
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLG 58 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRla 58 (71)
..++.|++||+|||=+..-. .......+.++.+|++|+.+|||=+
T Consensus 390 ~~k~yP~i~~~hGGP~~~~~-~~~~~~~q~~~~~G~~V~~~n~RGS 434 (620)
T COG1506 390 PRKKYPLIVYIHGGPSAQVG-YSFNPEIQVLASAGYAVLAPNYRGS 434 (620)
T ss_pred CCCCCCEEEEeCCCCccccc-cccchhhHHHhcCCeEEEEeCCCCC
Confidence 34457999999999644333 3345677999999999999999944
No 15
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.35 E-value=0.00021 Score=47.34 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=28.5
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGI 59 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap 59 (71)
.+.|||||-||-| |++..+...+.-+|..|++|++|++|-+.
T Consensus 98 ~~~PvvIFSHGlg---g~R~~yS~~~~eLAS~GyVV~aieHrDgS 139 (379)
T PF03403_consen 98 GKFPVVIFSHGLG---GSRTSYSAICGELASHGYVVAAIEHRDGS 139 (379)
T ss_dssp S-EEEEEEE--TT-----TTTTHHHHHHHHHTT-EEEEE---SS-
T ss_pred CCCCEEEEeCCCC---cchhhHHHHHHHHHhCCeEEEEeccCCCc
Confidence 7799999999974 66777788999999999999999999754
No 16
>PRK10566 esterase; Provisional
Probab=97.18 E-value=0.00072 Score=41.29 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=31.1
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRL 57 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRl 57 (71)
+++.|++|++||.+ +++.......+.++++|+.++.+|||-
T Consensus 24 ~~~~p~vv~~HG~~---~~~~~~~~~~~~l~~~G~~v~~~d~~g 64 (249)
T PRK10566 24 DTPLPTVFFYHGFT---SSKLVYSYFAVALAQAGFRVIMPDAPM 64 (249)
T ss_pred CCCCCEEEEeCCCC---cccchHHHHHHHHHhCCCEEEEecCCc
Confidence 34679999999964 333333456788888899999999995
No 17
>PLN00021 chlorophyllase
Probab=96.95 E-value=0.0015 Score=42.31 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
...+.|++||+||+++. ........+.+++.|++|+.+|++
T Consensus 48 ~~g~~PvVv~lHG~~~~---~~~y~~l~~~Las~G~~VvapD~~ 88 (313)
T PLN00021 48 EAGTYPVLLFLHGYLLY---NSFYSQLLQHIASHGFIVVAPQLY 88 (313)
T ss_pred CCCCCCEEEEECCCCCC---cccHHHHHHHHHhCCCEEEEecCC
Confidence 34568999999999764 233345567778889999999955
No 18
>PRK10115 protease 2; Provisional
Probab=96.87 E-value=0.0026 Score=45.05 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=31.9
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGI 59 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap 59 (71)
+.+.|++|++|||-.....+. .....+.++++|++|+.+|+|=+.
T Consensus 442 ~~~~P~ll~~hGg~~~~~~p~-f~~~~~~l~~rG~~v~~~n~RGs~ 486 (686)
T PRK10115 442 KGHNPLLVYGYGSYGASIDAD-FSFSRLSLLDRGFVYAIVHVRGGG 486 (686)
T ss_pred CCCCCEEEEEECCCCCCCCCC-ccHHHHHHHHCCcEEEEEEcCCCC
Confidence 345699999999654433333 233456788899999999999443
No 19
>PLN02442 S-formylglutathione hydrolase
Probab=96.81 E-value=0.0013 Score=41.75 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=27.2
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+++.|+|+++||++....+..........++..|++||.+|..
T Consensus 43 ~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~ 86 (283)
T PLN02442 43 DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTS 86 (283)
T ss_pred cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCC
Confidence 35678999999986532211111112335556669999999864
No 20
>KOG3847|consensus
Probab=96.55 E-value=0.0032 Score=41.58 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=36.9
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGI 59 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap 59 (71)
.+.+.|++||-||=| |+++.+...|.-+|..|++|..+++|-..
T Consensus 114 k~~k~PvvvFSHGLg---gsRt~YSa~c~~LAShG~VVaavEHRD~S 157 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLG---GSRTLYSAYCTSLASHGFVVAAVEHRDRS 157 (399)
T ss_pred CCCCccEEEEecccc---cchhhHHHHhhhHhhCceEEEEeecccCc
Confidence 467899999999953 66676777889999999999999999654
No 21
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=96.34 E-value=0.0025 Score=35.56 Aligned_cols=38 Identities=24% Similarity=0.171 Sum_probs=28.9
Q ss_pred EEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCC
Q psy9478 19 VMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGI 59 (71)
Q Consensus 19 viv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap 59 (71)
+||++||++. +........+.+++.|+.++.++||..-
T Consensus 1 ~vv~~HG~~~---~~~~~~~~~~~l~~~G~~v~~~~~~~~~ 38 (145)
T PF12695_consen 1 VVVLLHGWGG---SRRDYQPLAEALAEQGYAVVAFDYPGHG 38 (145)
T ss_dssp EEEEECTTTT---TTHHHHHHHHHHHHTTEEEEEESCTTST
T ss_pred CEEEECCCCC---CHHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 5899999976 2333345668888889999999998543
No 22
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=96.04 E-value=0.0052 Score=38.19 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=25.8
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~YR 56 (71)
.+.|+||.+||.+-....-...... ..++++ |++++-++-.
T Consensus 14 ~~~PLVv~LHG~~~~a~~~~~~s~~-~~lAd~~GfivvyP~~~ 55 (220)
T PF10503_consen 14 GPVPLVVVLHGCGQSAEDFAAGSGW-NALADREGFIVVYPEQS 55 (220)
T ss_pred CCCCEEEEeCCCCCCHHHHHhhcCH-HHHhhcCCeEEEccccc
Confidence 4689999999997643221111222 345555 9999988743
No 23
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=95.99 E-value=0.009 Score=38.02 Aligned_cols=42 Identities=5% Similarity=-0.037 Sum_probs=28.3
Q ss_pred CCceEEEEEeCCccccC-CCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYG-HGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g-~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
+++|++|++||-|-... +........+.+++.|+.++.+|||
T Consensus 23 ~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~ 65 (266)
T TIGR03101 23 GPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLY 65 (266)
T ss_pred CCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCC
Confidence 45789999999543221 1111123457777889999999999
No 24
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=95.94 E-value=0.01 Score=38.31 Aligned_cols=39 Identities=10% Similarity=0.027 Sum_probs=27.9
Q ss_pred CCceEEEEEeCCccccCCCCC-CCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNA-DAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~-~~~~~~~~~~~g~~vvsv~YR 56 (71)
+.+|+||++||.+-. ... .......+++.|+.|+.+|+|
T Consensus 85 ~~~~~iv~lHG~~~~---~~~~~~~~~~~l~~~g~~v~~~D~~ 124 (349)
T PLN02385 85 RPKAAVCFCHGYGDT---CTFFFEGIARKIASSGYGVFAMDYP 124 (349)
T ss_pred CCCeEEEEECCCCCc---cchHHHHHHHHHHhCCCEEEEecCC
Confidence 457899999996532 121 123456677789999999999
No 25
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=95.92 E-value=0.013 Score=36.89 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=25.5
Q ss_pred CCCceEEEEEeCCccccCCCCCCC---chHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADA---YGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~---~~~~~~~~~g~~vvsv~YR 56 (71)
.++.|+|+++||.+- +..... ....++++.|++||.+|+.
T Consensus 39 ~~~~P~vvllHG~~~---~~~~~~~~~~~~~la~~~g~~Vv~Pd~~ 81 (275)
T TIGR02821 39 AGPVPVLWYLSGLTC---THENFMIKAGAQRFAAEHGLALVAPDTS 81 (275)
T ss_pred CCCCCEEEEccCCCC---CccHHHhhhHHHHHHhhcCcEEEEeCCC
Confidence 346799999999862 222111 1224444459999999983
No 26
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=95.85 E-value=0.02 Score=36.51 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=27.9
Q ss_pred CCceEEEEEeCCccccCCCCC-CCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNA-DAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~-~~~~~~~~~~~g~~vvsv~YR 56 (71)
...++||++||.+ .+... .......++++|+.|+.+|+|
T Consensus 57 ~~~~~VvllHG~~---~~~~~~~~~~~~~L~~~Gy~V~~~D~r 96 (330)
T PLN02298 57 PPRALIFMVHGYG---NDISWTFQSTAIFLAQMGFACFALDLE 96 (330)
T ss_pred CCceEEEEEcCCC---CCcceehhHHHHHHHhCCCEEEEecCC
Confidence 4578999999985 12221 123456677889999999999
No 27
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=95.66 E-value=0.0041 Score=19.28 Aligned_cols=6 Identities=67% Similarity=1.658 Sum_probs=5.1
Q ss_pred eCCccc
Q psy9478 24 HGGGFA 29 (71)
Q Consensus 24 HGGg~~ 29 (71)
|||+|-
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 899994
No 28
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=95.45 E-value=0.024 Score=35.65 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=26.7
Q ss_pred eEEEEEeCC-ccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 18 PVMVWIHGG-GFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 18 pviv~iHGG-g~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
+.+|++||| ++..|+.......++.++++|+.++.+|+|
T Consensus 27 ~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~ 66 (274)
T TIGR03100 27 TGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYR 66 (274)
T ss_pred CeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCC
Confidence 455555554 455565443334568888889999999998
No 29
>PHA02857 monoglyceride lipase; Provisional
Probab=95.41 E-value=0.026 Score=34.87 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=29.9
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
+.+.++|+++||.+. +..........++++|+.++.+|+|
T Consensus 22 ~~~~~~v~llHG~~~---~~~~~~~~~~~l~~~g~~via~D~~ 61 (276)
T PHA02857 22 TYPKALVFISHGAGE---HSGRYEELAENISSLGILVFSHDHI 61 (276)
T ss_pred CCCCEEEEEeCCCcc---ccchHHHHHHHHHhCCCEEEEccCC
Confidence 345689999999753 3333345678888889999999999
No 30
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=95.10 E-value=0.042 Score=34.57 Aligned_cols=41 Identities=15% Similarity=0.040 Sum_probs=29.2
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
+++..|.+|++||.+. +..........+.++|+.++.+|.|
T Consensus 14 ~~~~~p~vvliHG~~~---~~~~w~~~~~~L~~~g~~vi~~dl~ 54 (273)
T PLN02211 14 PNRQPPHFVLIHGISG---GSWCWYKIRCLMENSGYKVTCIDLK 54 (273)
T ss_pred ccCCCCeEEEECCCCC---CcCcHHHHHHHHHhCCCEEEEeccc
Confidence 4456789999999754 2232234456676779999999998
No 31
>PRK10985 putative hydrolase; Provisional
Probab=94.88 E-value=0.049 Score=34.97 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=27.6
Q ss_pred CCceEEEEEeCCccccCCCCC--CCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNA--DAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~--~~~~~~~~~~~g~~vvsv~YR 56 (71)
...|++|++||.+ |+... .......++++|+.++.+|||
T Consensus 56 ~~~p~vll~HG~~---g~~~~~~~~~~~~~l~~~G~~v~~~d~r 96 (324)
T PRK10985 56 RHKPRLVLFHGLE---GSFNSPYAHGLLEAAQKRGWLGVVMHFR 96 (324)
T ss_pred CCCCEEEEeCCCC---CCCcCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999863 22221 123456777889999999999
No 32
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=94.57 E-value=0.043 Score=28.78 Aligned_cols=38 Identities=29% Similarity=0.293 Sum_probs=30.8
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
++.+++.+||-+--.+ -+...+..+++.|+.|+..|+|
T Consensus 15 ~k~~v~i~HG~~eh~~---ry~~~a~~L~~~G~~V~~~D~r 52 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSG---RYAHLAEFLAEQGYAVFAYDHR 52 (79)
T ss_pred CCEEEEEeCCcHHHHH---HHHHHHHHHHhCCCEEEEECCC
Confidence 6899999999864444 2345778899999999999998
No 33
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=94.53 E-value=0.032 Score=37.24 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=29.3
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+.+|+||++||.+- +..........+++.|+.|+.+|+|
T Consensus 133 ~~~~~~Vl~lHG~~~---~~~~~~~~a~~L~~~Gy~V~~~D~r 172 (395)
T PLN02652 133 GEMRGILIIIHGLNE---HSGRYLHFAKQLTSCGFGVYAMDWI 172 (395)
T ss_pred CCCceEEEEECCchH---HHHHHHHHHHHHHHCCCEEEEeCCC
Confidence 345689999999643 2222334567777889999999999
No 34
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=94.04 E-value=0.053 Score=34.63 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVN 54 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~ 54 (71)
.....||++|+||=. +.. ..+....+.++..|++||.++
T Consensus 13 ~~g~yPVv~f~~G~~-~~~--s~Ys~ll~hvAShGyIVV~~d 51 (259)
T PF12740_consen 13 SAGTYPVVLFLHGFL-LIN--SWYSQLLEHVASHGYIVVAPD 51 (259)
T ss_pred CCCCcCEEEEeCCcC-CCH--HHHHHHHHHHHhCceEEEEec
Confidence 455689999999976 222 225667789999999999999
No 35
>PRK00870 haloalkane dehalogenase; Provisional
Probab=94.03 E-value=0.082 Score=33.28 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=26.3
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.||++||.+ ++..........+++.++.|+.+|.|
T Consensus 46 ~~~lvliHG~~---~~~~~w~~~~~~L~~~gy~vi~~Dl~ 82 (302)
T PRK00870 46 GPPVLLLHGEP---SWSYLYRKMIPILAAAGHRVIAPDLI 82 (302)
T ss_pred CCEEEEECCCC---CchhhHHHHHHHHHhCCCEEEEECCC
Confidence 57899999963 22332334556677779999999998
No 36
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=93.50 E-value=0.091 Score=31.72 Aligned_cols=39 Identities=13% Similarity=0.014 Sum_probs=24.4
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
+.|.+|++||+.... ..........+.+.|+.|+.+|.|
T Consensus 24 ~~~~vl~~hG~~g~~--~~~~~~~~~~l~~~g~~vi~~d~~ 62 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS--HEYLENLRELLKEEGREVIMYDQL 62 (288)
T ss_pred CCCeEEEEcCCCCcc--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 357889999974321 111122334444458999999998
No 37
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=93.29 E-value=0.092 Score=30.77 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=24.4
Q ss_pred eEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 18 PVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 18 pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
|++|++||.+ ++..........++ +++.|+.+|.|
T Consensus 2 ~~vv~~hG~~---~~~~~~~~~~~~L~-~~~~v~~~d~~ 36 (251)
T TIGR03695 2 PVLVFLHGFL---GSGADWQALIELLG-PHFRCLAIDLP 36 (251)
T ss_pred CEEEEEcCCC---CchhhHHHHHHHhc-ccCeEEEEcCC
Confidence 6899999964 33333334445555 68999999988
No 38
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=93.16 E-value=0.25 Score=34.20 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=30.1
Q ss_pred CCCceEEEEEeCCccccCCCC-CCCchHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGN-ADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~-~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.++.|+||++||-+....... ........++++|+.|+.+|+|
T Consensus 19 ~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~R 62 (550)
T TIGR00976 19 GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTR 62 (550)
T ss_pred CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEecc
Confidence 347899999998765332111 1123456788899999999999
No 39
>KOG3101|consensus
Probab=92.43 E-value=0.27 Score=31.21 Aligned_cols=60 Identities=8% Similarity=0.042 Sum_probs=36.1
Q ss_pred cCCCCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCCcccccCCCcccC
Q psy9478 10 KVAQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGILGHVILSTALRY 71 (71)
Q Consensus 10 ~~~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap~Gf~~~~~~~~~ 71 (71)
.....++.|+++|+-|=-=+--+-.......+.+++.|++||.+| .+|-|-=..+|+++|
T Consensus 37 ~a~~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PD--TSPRG~~v~g~~esw 96 (283)
T KOG3101|consen 37 DAPRGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPD--TSPRGVEVAGDDESW 96 (283)
T ss_pred CcccCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCC--CCCCccccCCCcccc
Confidence 445667789999986632211111111233455555599999998 467777666766654
No 40
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=92.41 E-value=0.19 Score=29.89 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+.|+||++||.+- +..........+ .+++.++.+|+|
T Consensus 11 ~~~~~iv~lhG~~~---~~~~~~~~~~~l-~~~~~vi~~D~~ 48 (257)
T TIGR03611 11 ADAPVVVLSSGLGG---SGSYWAPQLDVL-TQRFHVVTYDHR 48 (257)
T ss_pred CCCCEEEEEcCCCc---chhHHHHHHHHH-HhccEEEEEcCC
Confidence 45689999999753 222211222333 347999999998
No 41
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=92.14 E-value=0.15 Score=32.34 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=26.3
Q ss_pred CCCCceEEEEEeCCccccCCCCCCC--chHH-HHhcCCcEEEEeCCCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADA--YGPE-FLMNKNVILVTVNYRLG 58 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~--~~~~-~~~~~g~~vvsv~YRla 58 (71)
-+...|++|++||-+- +..... .... ++.+.++.|+.+|++-.
T Consensus 32 f~~~~p~vilIHG~~~---~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~ 77 (275)
T cd00707 32 FNPSRPTRFIIHGWTS---SGEESWISDLRKAYLSRGDYNVIVVDWGRG 77 (275)
T ss_pred CCCCCCcEEEEcCCCC---CCCCcHHHHHHHHHHhcCCCEEEEEECccc
Confidence 3455789999999432 221111 2232 34445899999999854
No 42
>KOG1455|consensus
Probab=92.09 E-value=0.27 Score=32.28 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=32.4
Q ss_pred cCCCCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 10 KVAQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 10 ~~~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
+.+.++++-.++++||.|--... .....+..+++.|+.|..+||+
T Consensus 47 p~~~~~pr~lv~~~HG~g~~~s~--~~~~~a~~l~~~g~~v~a~D~~ 91 (313)
T KOG1455|consen 47 PLSGTEPRGLVFLCHGYGEHSSW--RYQSTAKRLAKSGFAVYAIDYE 91 (313)
T ss_pred cCCCCCCceEEEEEcCCcccchh--hHHHHHHHHHhCCCeEEEeecc
Confidence 33444778899999997643221 1234678899999999999998
No 43
>PRK10749 lysophospholipase L2; Provisional
Probab=92.01 E-value=0.17 Score=32.60 Aligned_cols=39 Identities=15% Similarity=-0.105 Sum_probs=27.1
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
...++||++||-+ ++..........+++.|+.|+.+|+|
T Consensus 52 ~~~~~vll~HG~~---~~~~~y~~~~~~l~~~g~~v~~~D~~ 90 (330)
T PRK10749 52 HHDRVVVICPGRI---ESYVKYAELAYDLFHLGYDVLIIDHR 90 (330)
T ss_pred CCCcEEEEECCcc---chHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3457899999953 22222233455677789999999999
No 44
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=91.92 E-value=0.84 Score=29.83 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCCcccccCCCcccC
Q psy9478 12 AQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGILGHVILSTALRY 71 (71)
Q Consensus 12 ~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap~Gf~~~~~~~~~ 71 (71)
++..++..+|=+||. -||..+-.+....+.+.|+.++.+||. -|||-..++++.|
T Consensus 30 ~~gs~~gTVv~~hGs---PGSH~DFkYi~~~l~~~~iR~I~iN~P--Gf~~t~~~~~~~~ 84 (297)
T PF06342_consen 30 PSGSPLGTVVAFHGS---PGSHNDFKYIRPPLDEAGIRFIGINYP--GFGFTPGYPDQQY 84 (297)
T ss_pred CCCCCceeEEEecCC---CCCccchhhhhhHHHHcCeEEEEeCCC--CCCCCCCCccccc
Confidence 445566789999996 677777778999999999999999997 3344443454443
No 45
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=91.89 E-value=0.11 Score=31.90 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=23.4
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.||++||.+.-...-.........+++.++.|+.+|+|
T Consensus 30 ~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~ 69 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSP 69 (282)
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4679999996532211110001123445568999999998
No 46
>PLN02511 hydrolase
Probab=91.71 E-value=0.37 Score=31.98 Aligned_cols=40 Identities=20% Similarity=0.086 Sum_probs=26.0
Q ss_pred CCceEEEEEeCCccccCCCCCC-CchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNAD-AYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~-~~~~~~~~~~g~~vvsv~YR 56 (71)
...|+||++||.+- ++.... ......+.++|+.++.+|+|
T Consensus 98 ~~~p~vvllHG~~g--~s~~~y~~~~~~~~~~~g~~vv~~d~r 138 (388)
T PLN02511 98 ADAPVLILLPGLTG--GSDDSYVRHMLLRARSKGWRVVVFNSR 138 (388)
T ss_pred CCCCEEEEECCCCC--CCCCHHHHHHHHHHHHCCCEEEEEecC
Confidence 35689999998632 222211 12334455679999999999
No 47
>COG4099 Predicted peptidase [General function prediction only]
Probab=91.61 E-value=0.17 Score=33.50 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=14.4
Q ss_pred CCCCCc-eEEEEEeCCcccc
Q psy9478 12 AQTTLL-PVMVWIHGGGFAY 30 (71)
Q Consensus 12 ~~~~~~-pviv~iHGGg~~~ 30 (71)
+++++. |.++|+||+|-..
T Consensus 185 ~pdkky~PLvlfLHgagq~g 204 (387)
T COG4099 185 APDKKYYPLVLFLHGAGQGG 204 (387)
T ss_pred CCCCccccEEEEEecCCCCC
Confidence 445555 9999999998653
No 48
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=91.48 E-value=0.27 Score=33.06 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCCceEEEEEeCCccccCCCCC-CCchHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNA-DAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~-~~~~~~~~~~~g~~vvsv~YR 56 (71)
+++.|+||..||.+ +.... .......++++|+.|+.+|+|
T Consensus 191 ~~~~P~Vli~gG~~---~~~~~~~~~~~~~La~~Gy~vl~~D~p 231 (414)
T PRK05077 191 DGPFPTVLVCGGLD---SLQTDYYRLFRDYLAPRGIAMLTIDMP 231 (414)
T ss_pred CCCccEEEEeCCcc---cchhhhHHHHHHHHHhCCCEEEEECCC
Confidence 45678877654432 21221 223456788889999999999
No 49
>PLN02965 Probable pheophorbidase
Probab=91.47 E-value=0.31 Score=29.93 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=24.2
Q ss_pred EEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 19 VMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 19 viv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+|++||.+ .+..........+++.++.|+.+|+|
T Consensus 5 ~vvllHG~~---~~~~~w~~~~~~L~~~~~~via~Dl~ 39 (255)
T PLN02965 5 HFVFVHGAS---HGAWCWYKLATLLDAAGFKSTCVDLT 39 (255)
T ss_pred EEEEECCCC---CCcCcHHHHHHHHhhCCceEEEecCC
Confidence 489999986 23332234445566668999999997
No 50
>PLN02872 triacylglycerol lipase
Probab=91.19 E-value=0.33 Score=32.56 Aligned_cols=44 Identities=16% Similarity=-0.026 Sum_probs=29.3
Q ss_pred CCceEEEEEeCCccccCC---CCCCCchHHHHhcCCcEEEEeCCCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGH---GNADAYGPEFLMNKNVILVTVNYRLG 58 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~---~~~~~~~~~~~~~~g~~vvsv~YRla 58 (71)
.+.|+++++||.+..... .......+..++++|+.|+.+|.|=.
T Consensus 72 ~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~ 118 (395)
T PLN02872 72 QRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT 118 (395)
T ss_pred CCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence 346889999997533221 11123455678888999999999843
No 51
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=91.02 E-value=0.25 Score=32.29 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=24.0
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+.+.|+||.+||-|-..+. .......+..|++++++|-|
T Consensus 79 ~~~~~Pavv~~hGyg~~~~~----~~~~~~~a~~G~~vl~~d~r 118 (320)
T PF05448_consen 79 AKGKLPAVVQFHGYGGRSGD----PFDLLPWAAAGYAVLAMDVR 118 (320)
T ss_dssp SSSSEEEEEEE--TT--GGG----HHHHHHHHHTT-EEEEE--T
T ss_pred CCCCcCEEEEecCCCCCCCC----cccccccccCCeEEEEecCC
Confidence 45789999999998754221 22345577889999999988
No 52
>PRK10673 acyl-CoA esterase; Provisional
Probab=90.64 E-value=0.31 Score=29.50 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=24.9
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+...|.||++||.+- +..........++ .++.++.+|.|
T Consensus 12 ~~~~~~~iv~lhG~~~---~~~~~~~~~~~l~-~~~~vi~~D~~ 51 (255)
T PRK10673 12 NPHNNSPIVLVHGLFG---SLDNLGVLARDLV-NDHDIIQVDMR 51 (255)
T ss_pred CCCCCCCEEEECCCCC---chhHHHHHHHHHh-hCCeEEEECCC
Confidence 3345689999999633 3332222333333 36899999998
No 53
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=90.33 E-value=0.54 Score=27.60 Aligned_cols=37 Identities=19% Similarity=0.089 Sum_probs=23.6
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..|++|++||-|-. ..........+ ..++.++.+|+|
T Consensus 12 ~~~~li~~hg~~~~---~~~~~~~~~~l-~~~~~v~~~d~~ 48 (251)
T TIGR02427 12 GAPVLVFINSLGTD---LRMWDPVLPAL-TPDFRVLRYDKR 48 (251)
T ss_pred CCCeEEEEcCcccc---hhhHHHHHHHh-hcccEEEEecCC
Confidence 56899999986432 22112233333 348999999998
No 54
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=89.38 E-value=0.33 Score=27.97 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=22.4
Q ss_pred EEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 20 MVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 20 iv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
||++||.+-.. .........++ +|+.++.+|+|
T Consensus 1 vv~~hG~~~~~---~~~~~~~~~l~-~~~~v~~~d~~ 33 (228)
T PF12697_consen 1 VVFLHGFGGSS---ESWDPLAEALA-RGYRVIAFDLP 33 (228)
T ss_dssp EEEE-STTTTG---GGGHHHHHHHH-TTSEEEEEECT
T ss_pred eEEECCCCCCH---HHHHHHHHHHh-CCCEEEEEecC
Confidence 68999986543 32234555564 79999999999
No 55
>KOG2100|consensus
Probab=89.01 E-value=0.94 Score=32.95 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCCCCCceEEEEEeCCccccCCCC--CCCchHHHHhcCCcEEEEeCCCCCC
Q psy9478 11 VAQTTLLPVMVWIHGGGFAYGHGN--ADAYGPEFLMNKNVILVTVNYRLGI 59 (71)
Q Consensus 11 ~~~~~~~pviv~iHGGg~~~g~~~--~~~~~~~~~~~~g~~vvsv~YRlap 59 (71)
..+.++.|++|+.|||=-..--.+ ........+...|++|+.+|+|=++
T Consensus 520 ~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~ 570 (755)
T KOG2100|consen 520 FDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSG 570 (755)
T ss_pred CCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcC
Confidence 345568999999999954111111 1123344555669999999999655
No 56
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=88.91 E-value=0.54 Score=31.36 Aligned_cols=38 Identities=16% Similarity=0.164 Sum_probs=24.3
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
...|+||++||.+... .........+++ ++.|+.+|+|
T Consensus 103 ~~~p~vvllHG~~~~~---~~~~~~~~~L~~-~~~vi~~D~r 140 (402)
T PLN02894 103 EDAPTLVMVHGYGASQ---GFFFRNFDALAS-RFRVIAIDQL 140 (402)
T ss_pred CCCCEEEEECCCCcch---hHHHHHHHHHHh-CCEEEEECCC
Confidence 3558999999986532 111122233433 6999999999
No 57
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=88.48 E-value=0.66 Score=27.15 Aligned_cols=36 Identities=25% Similarity=0.182 Sum_probs=22.5
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.+|++||.+- +..........++ +++.|+.+|+|
T Consensus 4 ~~~iv~~HG~~~---~~~~~~~~~~~l~-~~~~vi~~d~~ 39 (245)
T TIGR01738 4 NVHLVLIHGWGM---NAEVFRCLDEELS-AHFTLHLVDLP 39 (245)
T ss_pred CceEEEEcCCCC---chhhHHHHHHhhc-cCeEEEEecCC
Confidence 367899998532 3332223334443 36899999998
No 58
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=88.42 E-value=1.1 Score=30.30 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCceEEEEEeCCcccc----CCCC-----------CCCchHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAY----GHGN-----------ADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~----g~~~-----------~~~~~~~~~~~~g~~vvsv~YR 56 (71)
+.+.|+||.+||-|-.. |... .....+..++++|++|+++|-+
T Consensus 112 ~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 112 KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp -S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 67889999999865432 1111 0123468899999999999843
No 59
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=88.20 E-value=0.52 Score=28.63 Aligned_cols=37 Identities=16% Similarity=0.138 Sum_probs=23.4
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..|++|++||.+. +..........+++ ++.++.+|+|
T Consensus 27 ~~~~vv~~hG~~~---~~~~~~~~~~~l~~-~~~vi~~D~~ 63 (278)
T TIGR03056 27 AGPLLLLLHGTGA---STHSWRDLMPPLAR-SFRVVAPDLP 63 (278)
T ss_pred CCCeEEEEcCCCC---CHHHHHHHHHHHhh-CcEEEeecCC
Confidence 3589999999642 22222223344433 6899999998
No 60
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=88.12 E-value=0.6 Score=29.81 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=31.2
Q ss_pred EEEEEeCCccccCCCCC-CCchHHHHhcCCcEEEEeCCCCC
Q psy9478 19 VMVWIHGGGFAYGHGNA-DAYGPEFLMNKNVILVTVNYRLG 58 (71)
Q Consensus 19 viv~iHGGg~~~g~~~~-~~~~~~~~~~~g~~vvsv~YRla 58 (71)
.+|+|-||+|+.-.+.. +......++++|++|++.-|..+
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~t 58 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVT 58 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 78899999997665543 45567888889999999999653
No 61
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=87.29 E-value=0.67 Score=33.99 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=27.9
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..|+++++||-+- +..........++++|+.++.+|+|
T Consensus 448 g~P~VVllHG~~g---~~~~~~~lA~~La~~Gy~VIaiDlp 485 (792)
T TIGR03502 448 GWPVVIYQHGITG---AKENALAFAGTLAAAGVATIAIDHP 485 (792)
T ss_pred CCcEEEEeCCCCC---CHHHHHHHHHHHHhCCcEEEEeCCC
Confidence 4689999999543 2333345667788889999999996
No 62
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.09 E-value=1 Score=29.63 Aligned_cols=40 Identities=13% Similarity=0.079 Sum_probs=23.3
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEe
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTV 53 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv 53 (71)
.+..|++|.+||++=.-.....-.-..+.+.++|+.|+-+
T Consensus 58 ~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yP 97 (312)
T COG3509 58 PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYP 97 (312)
T ss_pred CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECc
Confidence 3444899999999543222111122334444459999887
No 63
>PRK03592 haloalkane dehalogenase; Provisional
Probab=86.87 E-value=0.63 Score=29.08 Aligned_cols=36 Identities=11% Similarity=-0.026 Sum_probs=24.5
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.+|++||.+ ++..........+++.+ .|+.+|.|
T Consensus 27 g~~vvllHG~~---~~~~~w~~~~~~L~~~~-~via~D~~ 62 (295)
T PRK03592 27 GDPIVFLHGNP---TSSYLWRNIIPHLAGLG-RCLAPDLI 62 (295)
T ss_pred CCEEEEECCCC---CCHHHHHHHHHHHhhCC-EEEEEcCC
Confidence 47899999864 33332234556666666 99999998
No 64
>PRK05855 short chain dehydrogenase; Validated
Probab=86.86 E-value=0.58 Score=31.74 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=24.5
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..|.+|++||.+-. ..........+ .+++.|+.+|+|
T Consensus 24 ~~~~ivllHG~~~~---~~~w~~~~~~L-~~~~~Vi~~D~~ 60 (582)
T PRK05855 24 DRPTVVLVHGYPDN---HEVWDGVAPLL-ADRFRVVAYDVR 60 (582)
T ss_pred CCCeEEEEcCCCch---HHHHHHHHHHh-hcceEEEEecCC
Confidence 36899999998632 22222233444 458999999998
No 65
>PRK07581 hypothetical protein; Validated
Probab=86.78 E-value=0.87 Score=29.20 Aligned_cols=41 Identities=5% Similarity=-0.214 Sum_probs=23.0
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..|+|++.||++|..............+...++.|+++|.|
T Consensus 40 ~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~ 80 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMF 80 (339)
T ss_pred CCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCC
Confidence 34677777777764322110000112344458999999998
No 66
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=86.78 E-value=0.39 Score=28.92 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=25.5
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+.|+||.+|+- .|-.......++.++++|+.|+.+|+-
T Consensus 12 ~~~~~Vvv~~d~---~G~~~~~~~~ad~lA~~Gy~v~~pD~f 50 (218)
T PF01738_consen 12 GPRPAVVVIHDI---FGLNPNIRDLADRLAEEGYVVLAPDLF 50 (218)
T ss_dssp SSEEEEEEE-BT---TBS-HHHHHHHHHHHHTT-EEEEE-CC
T ss_pred CCCCEEEEEcCC---CCCchHHHHHHHHHHhcCCCEEecccc
Confidence 578999999974 233332234678888999999999974
No 67
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=86.36 E-value=0.59 Score=31.55 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=24.2
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcC---CcEEEEeCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK---NVILVTVNY 55 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~---g~~vvsv~Y 55 (71)
.++.||++++||..|...... .......+++. .+++|.++-
T Consensus 206 ~~~~PvlyllDG~~w~~~~~~-~~~ld~li~~g~i~P~ivV~id~ 249 (411)
T PRK10439 206 PEERPLAILLDGQFWAESMPV-WPALDSLTHRGQLPPAVYLLIDA 249 (411)
T ss_pred CCCCCEEEEEECHHhhhcCCH-HHHHHHHHHcCCCCceEEEEECC
Confidence 357899999999998643221 11122333332 456778764
No 68
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=86.03 E-value=0.3 Score=29.81 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=15.6
Q ss_pred CCCCCceEEEEEeC-Ccccc
Q psy9478 12 AQTTLLPVMVWIHG-GGFAY 30 (71)
Q Consensus 12 ~~~~~~pviv~iHG-Gg~~~ 30 (71)
+..++.|||+++|| ++|..
T Consensus 19 ~~~~~~PvlylldG~~~~~~ 38 (251)
T PF00756_consen 19 DPSKPYPVLYLLDGQSGWFR 38 (251)
T ss_dssp GTTTTEEEEEEESHTTHHHH
T ss_pred CCCCCCEEEEEccCCccccc
Confidence 56788999999999 77764
No 69
>PRK03204 haloalkane dehalogenase; Provisional
Probab=85.98 E-value=0.62 Score=29.34 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=21.9
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.+|++||.+. +..........+. +++.++.+|+|
T Consensus 34 ~~~iv~lHG~~~---~~~~~~~~~~~l~-~~~~vi~~D~~ 69 (286)
T PRK03204 34 GPPILLCHGNPT---WSFLYRDIIVALR-DRFRCVAPDYL 69 (286)
T ss_pred CCEEEEECCCCc---cHHHHHHHHHHHh-CCcEEEEECCC
Confidence 478999999741 1111112223333 36899999999
No 70
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=85.75 E-value=1.4 Score=27.55 Aligned_cols=51 Identities=12% Similarity=0.026 Sum_probs=29.9
Q ss_pred CCCCCCceEEEEEeCCccccCCCCC---CC----chHHHHhcCCcEEEEeCCCCCCcccccC
Q psy9478 11 VAQTTLLPVMVWIHGGGFAYGHGNA---DA----YGPEFLMNKNVILVTVNYRLGILGHVIL 65 (71)
Q Consensus 11 ~~~~~~~pviv~iHGGg~~~g~~~~---~~----~~~~~~~~~g~~vvsv~YRlap~Gf~~~ 65 (71)
.....+.|+|+..|+=+-....... .. .....++++|+++|.+|-| |+..+
T Consensus 14 ~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~R----G~g~S 71 (272)
T PF02129_consen 14 ADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVR----GTGGS 71 (272)
T ss_dssp -TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-T----TSTTS
T ss_pred CCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCc----ccccC
Confidence 4567889999999987621100000 00 1122388999999999999 65544
No 71
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=84.84 E-value=0.66 Score=27.86 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=22.7
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|+||++||.+... .........+ .++.++++|+|
T Consensus 2 ~p~vvllHG~~~~~---~~w~~~~~~l--~~~~vi~~D~~ 36 (242)
T PRK11126 2 LPWLVFLHGLLGSG---QDWQPVGEAL--PDYPRLYIDLP 36 (242)
T ss_pred CCEEEEECCCCCCh---HHHHHHHHHc--CCCCEEEecCC
Confidence 37899999985532 2212233333 37999999998
No 72
>PRK10349 carboxylesterase BioH; Provisional
Probab=84.71 E-value=1.3 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=22.0
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.||++||.+. +..........+. +.+.|+.+|.|
T Consensus 13 ~~~ivllHG~~~---~~~~w~~~~~~L~-~~~~vi~~Dl~ 48 (256)
T PRK10349 13 NVHLVLLHGWGL---NAEVWRCIDEELS-SHFTLHLVDLP 48 (256)
T ss_pred CCeEEEECCCCC---ChhHHHHHHHHHh-cCCEEEEecCC
Confidence 356999999542 2222223334443 35889999988
No 73
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=84.53 E-value=1.1 Score=29.26 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=22.9
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.+|++||.+- +..........+++ ++.|+.+|+|
T Consensus 88 gp~lvllHG~~~---~~~~w~~~~~~L~~-~~~via~Dl~ 123 (360)
T PLN02679 88 GPPVLLVHGFGA---SIPHWRRNIGVLAK-NYTVYAIDLL 123 (360)
T ss_pred CCeEEEECCCCC---CHHHHHHHHHHHhc-CCEEEEECCC
Confidence 378999999753 22221223334443 7999999999
No 74
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=84.48 E-value=0.98 Score=30.74 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=26.5
Q ss_pred CCceEEEEEeCCccccCCCCC--CCchHHHHhcC-CcEEEEeCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNA--DAYGPEFLMNK-NVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~--~~~~~~~~~~~-g~~vvsv~YR 56 (71)
+..-.+|++-||-= ++.+. ....+..+|++ ++++|+|+|-
T Consensus 32 Ke~kaIvfiI~GfG--~dan~~~~d~~r~~iA~~fnvv~I~V~YH 74 (403)
T PF11144_consen 32 KEIKAIVFIIPGFG--ADANSNYLDFMREYIAKKFNVVVISVNYH 74 (403)
T ss_pred CCceEEEEEeCCcC--CCcchHHHHHHHHHHHHhCCEEEEEeeee
Confidence 34446666665521 22222 34678999998 9999999996
No 75
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=83.87 E-value=0.9 Score=29.65 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=28.9
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.....||++|+||=... ...+....+.++..|+++|.++--
T Consensus 42 ~~G~yPVilF~HG~~l~---ns~Ys~lL~HIASHGfIVVAPQl~ 82 (307)
T PF07224_consen 42 EAGTYPVILFLHGFNLY---NSFYSQLLAHIASHGFIVVAPQLY 82 (307)
T ss_pred cCCCccEEEEeechhhh---hHHHHHHHHHHhhcCeEEEechhh
Confidence 45567999999985432 222344567888889999998743
No 76
>KOG4391|consensus
Probab=83.86 E-value=2 Score=27.57 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=29.8
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHH-hcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFL-MNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~-~~~g~~vvsv~YR 56 (71)
.++.+|.++++|+-+=..|..- ...+.+ ...++.|..++||
T Consensus 74 ~E~S~pTlLyfh~NAGNmGhr~---~i~~~fy~~l~mnv~ivsYR 115 (300)
T KOG4391|consen 74 SESSRPTLLYFHANAGNMGHRL---PIARVFYVNLKMNVLIVSYR 115 (300)
T ss_pred ccCCCceEEEEccCCCcccchh---hHHHHHHHHcCceEEEEEee
Confidence 4457899999999876666433 344444 4459999999999
No 77
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=83.49 E-value=1.8 Score=27.70 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=22.5
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..|.+|++||.+ ++..........+.+ ++.++.+|+|
T Consensus 130 ~~~~vl~~HG~~---~~~~~~~~~~~~l~~-~~~v~~~d~~ 166 (371)
T PRK14875 130 DGTPVVLIHGFG---GDLNNWLFNHAALAA-GRPVIALDLP 166 (371)
T ss_pred CCCeEEEECCCC---CccchHHHHHHHHhc-CCEEEEEcCC
Confidence 357899999753 222222223344433 5899999988
No 78
>PRK13604 luxD acyl transferase; Provisional
Probab=82.57 E-value=1.9 Score=28.29 Aligned_cols=41 Identities=10% Similarity=-0.058 Sum_probs=29.9
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRL 57 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRl 57 (71)
.++.+++|..||=+=. +......++.++++|+.++..|+|-
T Consensus 34 ~~~~~~vIi~HGf~~~---~~~~~~~A~~La~~G~~vLrfD~rg 74 (307)
T PRK13604 34 PKKNNTILIASGFARR---MDHFAGLAEYLSSNGFHVIRYDSLH 74 (307)
T ss_pred CCCCCEEEEeCCCCCC---hHHHHHHHHHHHHCCCEEEEecCCC
Confidence 4566889999985432 2223456788999999999999763
No 79
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=82.07 E-value=4 Score=26.47 Aligned_cols=38 Identities=5% Similarity=0.069 Sum_probs=25.5
Q ss_pred EEEEEeC---CccccCCCCCCCchHHHHhcCCcEEEEeCCCC
Q psy9478 19 VMVWIHG---GGFAYGHGNADAYGPEFLMNKNVILVTVNYRL 57 (71)
Q Consensus 19 viv~iHG---Gg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRl 57 (71)
.++.+|| .+|+... .........++++|+.|+.+|+|-
T Consensus 64 pvl~v~~~~~~~~~~d~-~~~~~~~~~L~~~G~~V~~~D~~g 104 (350)
T TIGR01836 64 PLLIVYALVNRPYMLDL-QEDRSLVRGLLERGQDVYLIDWGY 104 (350)
T ss_pred cEEEeccccccceeccC-CCCchHHHHHHHCCCeEEEEeCCC
Confidence 4777886 3333322 123456788888999999999984
No 80
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=81.50 E-value=1.3 Score=26.77 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=10.4
Q ss_pred CCCCCCceEEEEEeCCccc
Q psy9478 11 VAQTTLLPVMVWIHGGGFA 29 (71)
Q Consensus 11 ~~~~~~~pviv~iHGGg~~ 29 (71)
.+.++..|++|++||-|-.
T Consensus 8 ~~~~~~~~lvi~LHG~G~~ 26 (216)
T PF02230_consen 8 EPKGKAKPLVILLHGYGDS 26 (216)
T ss_dssp --SST-SEEEEEE--TTS-
T ss_pred CCCCCCceEEEEECCCCCC
Confidence 3456778999999997543
No 81
>PRK06489 hypothetical protein; Provisional
Probab=81.20 E-value=3.1 Score=27.06 Aligned_cols=38 Identities=11% Similarity=-0.074 Sum_probs=22.7
Q ss_pred ceEEEEEeCCccccCCCCCC-CchHHHH-------hcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNAD-AYGPEFL-------MNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~-~~~~~~~-------~~~g~~vvsv~YR 56 (71)
.|.+|++||.+-... ... ......+ ..+++.|+.+|+|
T Consensus 69 gpplvllHG~~~~~~--~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~ 114 (360)
T PRK06489 69 DNAVLVLHGTGGSGK--SFLSPTFAGELFGPGQPLDASKYFIILPDGI 114 (360)
T ss_pred CCeEEEeCCCCCchh--hhccchhHHHhcCCCCcccccCCEEEEeCCC
Confidence 578999999864221 111 1111111 1357899999998
No 82
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=80.45 E-value=2 Score=28.76 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=23.6
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..|.+|++||.+.. ..........++ +++.|+.+|.|
T Consensus 126 ~~~~ivllHG~~~~---~~~w~~~~~~L~-~~~~Via~Dlp 162 (383)
T PLN03084 126 NNPPVLLIHGFPSQ---AYSYRKVLPVLS-KNYHAIAFDWL 162 (383)
T ss_pred CCCeEEEECCCCCC---HHHHHHHHHHHh-cCCEEEEECCC
Confidence 35789999997532 222222334444 37999999998
No 83
>KOG2564|consensus
Probab=79.42 E-value=2.7 Score=27.83 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=27.7
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~YR 56 (71)
+++.-|+++..||||...-+- ...++.+..+ ...++.+|-|
T Consensus 70 ~~t~gpil~l~HG~G~S~LSf---A~~a~el~s~~~~r~~a~DlR 111 (343)
T KOG2564|consen 70 SATEGPILLLLHGGGSSALSF---AIFASELKSKIRCRCLALDLR 111 (343)
T ss_pred CCCCccEEEEeecCcccchhH---HHHHHHHHhhcceeEEEeecc
Confidence 355679999999998754332 2344444444 7778888877
No 84
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=79.17 E-value=2.1 Score=26.53 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=21.7
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.||++||-+.. ..........+. ++..|+.+|+|
T Consensus 25 ~~plvllHG~~~~---~~~w~~~~~~L~-~~~~vi~~Dl~ 60 (276)
T TIGR02240 25 LTPLLIFNGIGAN---LELVFPFIEALD-PDLEVIAFDVP 60 (276)
T ss_pred CCcEEEEeCCCcc---hHHHHHHHHHhc-cCceEEEECCC
Confidence 3678999984332 222122333333 36899999998
No 85
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=78.56 E-value=4.4 Score=25.65 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=21.9
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+.+|++||+.... .. ......+...++.|+.+|+|
T Consensus 27 ~~~lvllHG~~~~~---~~-~~~~~~~~~~~~~vi~~D~~ 62 (306)
T TIGR01249 27 GKPVVFLHGGPGSG---TD-PGCRRFFDPETYRIVLFDQR 62 (306)
T ss_pred CCEEEEECCCCCCC---CC-HHHHhccCccCCEEEEECCC
Confidence 35679999964321 11 12222333458899999998
No 86
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=77.65 E-value=2.8 Score=26.14 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=23.2
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.|.+|++||.+.. ..........+++. ..++.+|.|
T Consensus 29 ~~~vlllHG~~~~---~~~w~~~~~~L~~~-~~vi~~Dlp 64 (294)
T PLN02824 29 GPALVLVHGFGGN---ADHWRKNTPVLAKS-HRVYAIDLL 64 (294)
T ss_pred CCeEEEECCCCCC---hhHHHHHHHHHHhC-CeEEEEcCC
Confidence 3789999996442 22223344555544 589999988
No 87
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.61 E-value=4 Score=25.44 Aligned_cols=36 Identities=11% Similarity=0.170 Sum_probs=27.1
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNY 55 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~Y 55 (71)
.|++|.+|+= .|-...-...++.++++|++++.+|.
T Consensus 27 ~P~VIv~hei---~Gl~~~i~~~a~rlA~~Gy~v~~Pdl 62 (236)
T COG0412 27 FPGVIVLHEI---FGLNPHIRDVARRLAKAGYVVLAPDL 62 (236)
T ss_pred CCEEEEEecc---cCCchHHHHHHHHHHhCCcEEEechh
Confidence 3999999985 34333334677999999999988874
No 88
>COG1647 Esterase/lipase [General function prediction only]
Probab=76.35 E-value=2.3 Score=27.02 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=35.8
Q ss_pred eEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC---CCCcccccCC
Q psy9478 18 PVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR---LGILGHVILS 66 (71)
Q Consensus 18 pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR---lap~Gf~~~~ 66 (71)
..++.+||= .|++.+....++.+.+.|+.|-.++|+ ..|.-|+.++
T Consensus 16 ~AVLllHGF---TGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~ 64 (243)
T COG1647 16 RAVLLLHGF---TGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTT 64 (243)
T ss_pred EEEEEEecc---CCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCC
Confidence 688999983 688887788999999999999999998 3444444443
No 89
>PRK11460 putative hydrolase; Provisional
Probab=76.30 E-value=2.8 Score=25.77 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=22.4
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcC--CcEEEEeC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK--NVILVTVN 54 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~--g~~vvsv~ 54 (71)
.+..|+||++||-|= +..........+++. ++.+++++
T Consensus 13 ~~~~~~vIlLHG~G~---~~~~~~~l~~~l~~~~~~~~~i~~~ 52 (232)
T PRK11460 13 KPAQQLLLLFHGVGD---NPVAMGEIGSWFAPAFPDALVVSVG 52 (232)
T ss_pred CCCCcEEEEEeCCCC---ChHHHHHHHHHHHHHCCCCEEECCC
Confidence 456789999999753 233223444555544 45566655
No 90
>KOG2281|consensus
Probab=76.02 E-value=6.3 Score=29.00 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=32.9
Q ss_pred CCCCCCceEEEEEeCCccccCCCCCC---Cch-HHHHhcCCcEEEEeCCCCC
Q psy9478 11 VAQTTLLPVMVWIHGGGFAYGHGNAD---AYG-PEFLMNKNVILVTVNYRLG 58 (71)
Q Consensus 11 ~~~~~~~pviv~iHGGg~~~g~~~~~---~~~-~~~~~~~g~~vvsv~YRla 58 (71)
.+..++.|++++++||==+.--.+.. .+. ...++..|++||.+|=|=+
T Consensus 636 ~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~IDnRGS 687 (867)
T KOG2281|consen 636 FQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFIDNRGS 687 (867)
T ss_pred CCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEEcCCCc
Confidence 34667899999999996554333321 122 2566778999999998843
No 91
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=75.53 E-value=2.9 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=17.0
Q ss_pred chHHHHhcCCcEEEEeCCCCCC
Q psy9478 38 YGPEFLMNKNVILVTVNYRLGI 59 (71)
Q Consensus 38 ~~~~~~~~~g~~vvsv~YRlap 59 (71)
...++++++|++|+.+|||-+.
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~ 26 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSG 26 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSS
T ss_pred HHHHHHHhCCEEEEEEcCCCCC
Confidence 4568889999999999999766
No 92
>TIGR02806 clostrip clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415).
Probab=73.91 E-value=2.7 Score=29.24 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=14.8
Q ss_pred CCCCceEEEEEeCCccccC
Q psy9478 13 QTTLLPVMVWIHGGGFAYG 31 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g 31 (71)
+..+.-.|+|-||+||.-.
T Consensus 111 PAd~Y~LIiwnHG~GW~p~ 129 (476)
T TIGR02806 111 EADKYMLIMANHGGGAKDD 129 (476)
T ss_pred cccceeEEEEeCCCCCcCC
Confidence 3455678999999999843
No 93
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=73.48 E-value=4.2 Score=27.24 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=31.6
Q ss_pred cCCCCCCceEEEEEeCCccccCCCCCC-C-chHHHHhcCCcEEEEeCCC
Q psy9478 10 KVAQTTLLPVMVWIHGGGFAYGHGNAD-A-YGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 10 ~~~~~~~~pviv~iHGGg~~~g~~~~~-~-~~~~~~~~~g~~vvsv~YR 56 (71)
..+.++++|.+|-+||= .|+.+++ . ...+.+.++|+.+|..+.|
T Consensus 68 ~~p~~~~~P~vVl~HGL---~G~s~s~y~r~L~~~~~~rg~~~Vv~~~R 113 (345)
T COG0429 68 EDPRAAKKPLVVLFHGL---EGSSNSPYARGLMRALSRRGWLVVVFHFR 113 (345)
T ss_pred cCccccCCceEEEEecc---CCCCcCHHHHHHHHHHHhcCCeEEEEecc
Confidence 33566778999999983 4555442 1 2446666779999999999
No 94
>KOG3967|consensus
Probab=71.76 E-value=9.4 Score=24.50 Aligned_cols=16 Identities=31% Similarity=0.528 Sum_probs=12.5
Q ss_pred CceEEEEEeCCccccC
Q psy9478 16 LLPVMVWIHGGGFAYG 31 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g 31 (71)
+...+|.|||.|.+.-
T Consensus 100 ~~kLlVLIHGSGvVrA 115 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRA 115 (297)
T ss_pred ccceEEEEecCceEec
Confidence 3458999999998754
No 95
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=71.36 E-value=4.6 Score=20.29 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=8.0
Q ss_pred CCCCCceEEEEEeCC
Q psy9478 12 AQTTLLPVMVWIHGG 26 (71)
Q Consensus 12 ~~~~~~pviv~iHGG 26 (71)
+...++|+++..||=
T Consensus 38 ~~~~~k~pVll~HGL 52 (63)
T PF04083_consen 38 NQNKKKPPVLLQHGL 52 (63)
T ss_dssp TTTTT--EEEEE--T
T ss_pred ccCCCCCcEEEECCc
Confidence 455678999999984
No 96
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=69.98 E-value=4.2 Score=27.92 Aligned_cols=14 Identities=36% Similarity=0.971 Sum_probs=11.7
Q ss_pred CCCCceEEEEEeCC
Q psy9478 13 QTTLLPVMVWIHGG 26 (71)
Q Consensus 13 ~~~~~pviv~iHGG 26 (71)
..+..|+++|++||
T Consensus 73 ~~~~~Pl~lwlnGG 86 (462)
T PTZ00472 73 GNPEAPVLLWMTGG 86 (462)
T ss_pred CCCCCCEEEEECCC
Confidence 44567999999999
No 97
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=69.95 E-value=4.9 Score=26.43 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=29.0
Q ss_pred CCCCCceEEEEEeCCccccCCCCCCCchHHHHhc-C--CcEEEEeCCC
Q psy9478 12 AQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMN-K--NVILVTVNYR 56 (71)
Q Consensus 12 ~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~-~--g~~vvsv~YR 56 (71)
++..++||++.+||=-|....+-.. .....+++ + .+++|-|+|-
T Consensus 93 ~~~~k~pvl~~~DG~~~~~~g~i~~-~~dsli~~g~i~pai~vgid~~ 139 (299)
T COG2382 93 NPLEKYPVLYLQDGQDWFRSGRIPR-ILDSLIAAGEIPPAILVGIDYI 139 (299)
T ss_pred CccccccEEEEeccHHHHhcCChHH-HHHHHHHcCCCCCceEEecCCC
Confidence 4567899999999998876543322 22233333 2 7888888874
No 98
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=69.59 E-value=6.3 Score=27.20 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=24.3
Q ss_pred CCceEEEEEeCCccccCCCCC-CCchHHHH-hcC-CcEEEEeCCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNA-DAYGPEFL-MNK-NVILVTVNYRL 57 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~-~~~~~~~~-~~~-g~~vvsv~YRl 57 (71)
...|.+|++||-+-. +.... .......+ ... ++.|+.+|.+-
T Consensus 39 ~~~ptvIlIHG~~~s-~~~~~w~~~l~~al~~~~~d~nVI~VDw~g 83 (442)
T TIGR03230 39 HETKTFIVIHGWTVT-GMFESWVPKLVAALYEREPSANVIVVDWLS 83 (442)
T ss_pred CCCCeEEEECCCCcC-CcchhhHHHHHHHHHhccCCCEEEEEECCC
Confidence 457899999997642 21111 11122222 233 68999999973
No 99
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=69.13 E-value=11 Score=25.60 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=33.4
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCCc
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGIL 60 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap~ 60 (71)
.++|++++-||-|=. .+...+....+++.|++|+.+++-=+-.
T Consensus 69 ~~~PlvvlshG~Gs~---~~~f~~~A~~lAs~Gf~Va~~~hpgs~~ 111 (365)
T COG4188 69 YLLPLVVLSHGSGSY---VTGFAWLAEHLASYGFVVAAPDHPGSNA 111 (365)
T ss_pred CcCCeEEecCCCCCC---ccchhhhHHHHhhCceEEEeccCCCccc
Confidence 478999999997643 5556678899999999999988764433
No 100
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=68.27 E-value=5.9 Score=27.52 Aligned_cols=37 Identities=14% Similarity=-0.062 Sum_probs=23.1
Q ss_pred ceEEEEEeCCccccCCCCCCC-chHHHHh---cCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADA-YGPEFLM---NKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~-~~~~~~~---~~g~~vvsv~YR 56 (71)
.|.||++||.+.. ..... .....++ +.++.++.+|+|
T Consensus 201 k~~VVLlHG~~~s---~~~W~~~~~~~L~~~~~~~yrVia~Dl~ 241 (481)
T PLN03087 201 KEDVLFIHGFISS---SAFWTETLFPNFSDAAKSTYRLFAVDLL 241 (481)
T ss_pred CCeEEEECCCCcc---HHHHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 4789999999632 22111 1112233 358999999998
No 101
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=66.45 E-value=4.4 Score=26.54 Aligned_cols=14 Identities=29% Similarity=0.904 Sum_probs=9.9
Q ss_pred CCCCceEEEEEeCC
Q psy9478 13 QTTLLPVMVWIHGG 26 (71)
Q Consensus 13 ~~~~~pviv~iHGG 26 (71)
..+..|+++|+.||
T Consensus 36 ~~~~~Pl~~wlnGG 49 (415)
T PF00450_consen 36 DPEDDPLILWLNGG 49 (415)
T ss_dssp GGCSS-EEEEEE-T
T ss_pred CCCCccEEEEecCC
Confidence 44677999999999
No 102
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=65.30 E-value=4 Score=26.88 Aligned_cols=47 Identities=15% Similarity=0.105 Sum_probs=22.1
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCch-HHHHhc--CCcEEEEeCCCCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYG-PEFLMN--KNVILVTVNYRLGI 59 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~-~~~~~~--~g~~vvsv~YRlap 59 (71)
-+..+|++|+|||-.-...+....... ..++.. ++..|+.||+....
T Consensus 67 fn~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a 116 (331)
T PF00151_consen 67 FNPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGA 116 (331)
T ss_dssp --TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHH
T ss_pred cCCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhc
Confidence 356789999999853322111111112 234445 57889999987543
No 103
>COG0400 Predicted esterase [General function prediction only]
Probab=65.27 E-value=7.8 Score=23.94 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=13.5
Q ss_pred CCCCCCceEEEEEeCCc
Q psy9478 11 VAQTTLLPVMVWIHGGG 27 (71)
Q Consensus 11 ~~~~~~~pviv~iHGGg 27 (71)
.+.+...|++|++||-|
T Consensus 12 ~~~~p~~~~iilLHG~G 28 (207)
T COG0400 12 KPGDPAAPLLILLHGLG 28 (207)
T ss_pred CCCCCCCcEEEEEecCC
Confidence 34556678999999998
No 104
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=64.50 E-value=2 Score=28.96 Aligned_cols=16 Identities=31% Similarity=0.864 Sum_probs=10.6
Q ss_pred CCCceEEEEEeCCccc
Q psy9478 14 TTLLPVMVWIHGGGFA 29 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~ 29 (71)
.++.-+|+|=||+||.
T Consensus 96 A~~y~LIlw~HG~Gw~ 111 (397)
T PF03415_consen 96 ADRYGLILWDHGGGWL 111 (397)
T ss_dssp ECEEEEEEES-B-TT-
T ss_pred cccEEEEEEECCCCCC
Confidence 4456789999999993
No 105
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=63.50 E-value=8.6 Score=20.44 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=22.2
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..--+++||.|.|+.- ..............+-.-|.+.||
T Consensus 24 ~~~~vl~Fh~G~fiGt-~t~~p~~~~~v~~~~~~~V~V~Y~ 63 (89)
T PF14041_consen 24 SPQQVLFFHDGEFIGT-ATPDPYGYIDVIRSTDDTVTVQYR 63 (89)
T ss_pred CCeEEEEEECCEEccc-CCccccCceeEEeeCCCEEEEEEE
Confidence 3357788999999743 332222222222335556777777
No 106
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=60.23 E-value=26 Score=20.78 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=24.1
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVN 54 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~ 54 (71)
+.+.||++..++||...+...........+..- |+.++.+.
T Consensus 101 ~~~~pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Ps 142 (167)
T cd07036 101 QFKVPIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPS 142 (167)
T ss_pred CccCCEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeC
Confidence 346789888877775433333212233455555 88887764
No 107
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=59.18 E-value=8.2 Score=24.03 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=12.7
Q ss_pred CCCceEEEEEeCCcccc
Q psy9478 14 TTLLPVMVWIHGGGFAY 30 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~ 30 (71)
.+...++||+||=....
T Consensus 15 ~~~~~vlvfVHGyn~~f 31 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNNSF 31 (233)
T ss_pred CCCCeEEEEEeCCCCCH
Confidence 45678999999976543
No 108
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=59.02 E-value=19 Score=23.34 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=15.7
Q ss_pred hHHHHhcCCcEEEEeCCC
Q psy9478 39 GPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 39 ~~~~~~~~g~~vvsv~YR 56 (71)
....++++|+.|+.+|.|
T Consensus 66 ~~~~l~~~G~~V~~~D~r 83 (332)
T TIGR01607 66 WIENFNKNGYSVYGLDLQ 83 (332)
T ss_pred HHHHHHHCCCcEEEeccc
Confidence 467888899999999997
No 109
>PLN02578 hydrolase
Probab=58.72 E-value=10 Score=24.64 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=21.2
Q ss_pred eEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 18 PVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 18 pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
|.+|++||-+- +..........++ .++.|+.+|+|
T Consensus 87 ~~vvliHG~~~---~~~~w~~~~~~l~-~~~~v~~~D~~ 121 (354)
T PLN02578 87 LPIVLIHGFGA---SAFHWRYNIPELA-KKYKVYALDLL 121 (354)
T ss_pred CeEEEECCCCC---CHHHHHHHHHHHh-cCCEEEEECCC
Confidence 55789998543 2222122334443 36999999998
No 110
>KOG1552|consensus
Probab=57.91 E-value=5.9 Score=25.52 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~YR 56 (71)
....++++|.||=+.-.| + ..-....+... ++.+++-|||
T Consensus 57 ~~~~~~lly~hGNa~Dlg--q-~~~~~~~l~~~ln~nv~~~DYS 97 (258)
T KOG1552|consen 57 EAAHPTLLYSHGNAADLG--Q-MVELFKELSIFLNCNVVSYDYS 97 (258)
T ss_pred cccceEEEEcCCcccchH--H-HHHHHHHHhhcccceEEEEecc
Confidence 335699999999866666 1 11222334443 9999999999
No 111
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.14 E-value=18 Score=23.91 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=27.7
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+.++|.+|.+||=+-..|. .......+..|+.++..+-|
T Consensus 79 ~~~~~P~vV~fhGY~g~~g~----~~~~l~wa~~Gyavf~MdvR 118 (321)
T COG3458 79 EKGKLPAVVQFHGYGGRGGE----WHDMLHWAVAGYAVFVMDVR 118 (321)
T ss_pred cCCccceEEEEeeccCCCCC----ccccccccccceeEEEEecc
Confidence 34789999999985443332 33344566678889988888
No 112
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=57.02 E-value=8.2 Score=25.12 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=14.8
Q ss_pred CCCceEEEEEeCCccccCCCCCCCchHHHHhcC--CcEEEEeCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK--NVILVTVNY 55 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~--g~~vvsv~Y 55 (71)
.+++|+++| ||=|=..+++.........+.+. |+-|.+++-
T Consensus 3 ~~~~PvViw-HGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~i 45 (279)
T PF02089_consen 3 PSPLPVVIW-HGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEI 45 (279)
T ss_dssp TSS--EEEE---TT--S--TTTHHHHHHHHHHHSTT--EEE--S
T ss_pred CCCCcEEEE-EcCccccCChhHHHHHHHHHHHhCCCceEEEEEE
Confidence 456788776 88765444443322333444433 777766653
No 113
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=56.75 E-value=26 Score=23.71 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=24.9
Q ss_pred CCCceEEEEEeCCc---cccCCCCCCCchHHHHhcC-CcEEEEeC
Q psy9478 14 TTLLPVMVWIHGGG---FAYGHGNADAYGPEFLMNK-NVILVTVN 54 (71)
Q Consensus 14 ~~~~pviv~iHGGg---~~~g~~~~~~~~~~~~~~~-g~~vvsv~ 54 (71)
......+++|-||. +..............+|.. |.+++.+.
T Consensus 61 ~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~ 105 (367)
T PF10142_consen 61 KNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILY 105 (367)
T ss_pred CCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeC
Confidence 44567999999998 3222222223344566655 88877764
No 114
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=55.82 E-value=12 Score=24.14 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=27.9
Q ss_pred eEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 18 PVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 18 pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.+||.+||.+=..+. +......+..+|+.|+..|.|
T Consensus 35 g~Vvl~HG~~Eh~~r---y~~la~~l~~~G~~V~~~D~R 70 (298)
T COG2267 35 GVVVLVHGLGEHSGR---YEELADDLAARGFDVYALDLR 70 (298)
T ss_pred cEEEEecCchHHHHH---HHHHHHHHHhCCCEEEEecCC
Confidence 799999998654332 224567888889999999998
No 115
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=49.68 E-value=26 Score=21.85 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEeCCccccCCC-CCCCchHHHHhcCCcE---EEEeCCCCCC
Q psy9478 20 MVWIHGGGFAYGHG-NADAYGPEFLMNKNVI---LVTVNYRLGI 59 (71)
Q Consensus 20 iv~iHGGg~~~g~~-~~~~~~~~~~~~~g~~---vvsv~YRlap 59 (71)
+|++||=+ ++. .........+.++|+. +...+|--..
T Consensus 4 VVlVHG~~---~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~ 44 (219)
T PF01674_consen 4 VVLVHGTG---GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGN 44 (219)
T ss_dssp EEEE--TT---TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CC
T ss_pred EEEECCCC---cchhhCHHHHHHHHHHcCCCcceeEeccCCCCC
Confidence 57899976 322 2335677888889988 7888886544
No 116
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=48.96 E-value=43 Score=21.04 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=31.8
Q ss_pred CCCceEEEEEeCCccccCCCCCC--CchHHHHhcCCcEEEEeCCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNAD--AYGPEFLMNKNVILVTVNYRL 57 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~--~~~~~~~~~~g~~vvsv~YRl 57 (71)
.+..|+.+..|===...|+.++. ....+.+.++|+.++..|||-
T Consensus 25 ~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRg 70 (210)
T COG2945 25 TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRG 70 (210)
T ss_pred CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccc
Confidence 46678888887665555555542 235577778899999999995
No 117
>KOG1838|consensus
Probab=48.74 E-value=25 Score=24.23 Aligned_cols=41 Identities=20% Similarity=0.056 Sum_probs=28.6
Q ss_pred CCCceEEEEEeCCccccCCCCCC-CchHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNAD-AYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~-~~~~~~~~~~g~~vvsv~YR 56 (71)
....|++|.+||=.+ ||.+.+ ......+.++|+.+|..|-|
T Consensus 122 ~~~~P~vvilpGltg--~S~~~YVr~lv~~a~~~G~r~VVfN~R 163 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTG--GSHESYVRHLVHEAQRKGYRVVVFNHR 163 (409)
T ss_pred CCCCcEEEEecCCCC--CChhHHHHHHHHHHHhCCcEEEEECCC
Confidence 456799999998543 444432 23445556669999999999
No 118
>cd02421 Peptidase_C39_likeD A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this sub-family.
Probab=47.05 E-value=19 Score=19.41 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.2
Q ss_pred CCCCceEEEEEeCCcccc
Q psy9478 13 QTTLLPVMVWIHGGGFAY 30 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~ 30 (71)
+...+|+|++.++|.|..
T Consensus 66 ~~~~lP~i~~~~~g~~~V 83 (124)
T cd02421 66 PTLLLPAILLLKNGRACV 83 (124)
T ss_pred CcccCCEEEEEcCCCEEE
Confidence 345789999999988864
No 119
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=46.43 E-value=27 Score=22.76 Aligned_cols=46 Identities=7% Similarity=-0.139 Sum_probs=34.3
Q ss_pred CCCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCC
Q psy9478 12 AQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRL 57 (71)
Q Consensus 12 ~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRl 57 (71)
...+.+.++|.+||-|-.-..+..-...++.+.+.|+..+++.=..
T Consensus 82 ~~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~ 127 (310)
T PF12048_consen 82 NSAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPD 127 (310)
T ss_pred cCCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCC
Confidence 4556678999999987765555544567788888999998876544
No 120
>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]
Probab=46.36 E-value=16 Score=21.48 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=11.7
Q ss_pred CceEEEEEeCCcccc
Q psy9478 16 LLPVMVWIHGGGFAY 30 (71)
Q Consensus 16 ~~pviv~iHGGg~~~ 30 (71)
+.-.+||+||--|-.
T Consensus 56 ~y~~viFvHGCFWh~ 70 (150)
T COG3727 56 KYRCVIFVHGCFWHG 70 (150)
T ss_pred CceEEEEEeeeeccC
Confidence 445889999998854
No 121
>PLN02200 adenylate kinase family protein
Probab=46.05 E-value=39 Score=21.04 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=23.8
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEe
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTV 53 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv 53 (71)
...+.|.+|++.|. -|+.. ...++.++++ |+..++.
T Consensus 38 ~~~~~~~ii~I~G~---PGSGK--sT~a~~La~~~g~~his~ 74 (234)
T PLN02200 38 SKEKTPFITFVLGG---PGSGK--GTQCEKIVETFGFKHLSA 74 (234)
T ss_pred ccCCCCEEEEEECC---CCCCH--HHHHHHHHHHhCCeEEEc
Confidence 34556788888776 34444 4666667766 8887776
No 122
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=45.96 E-value=29 Score=21.45 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=21.7
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHh--------cCCcEEEEeCCCCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLM--------NKNVILVTVNYRLGI 59 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~--------~~g~~vvsv~YRlap 59 (71)
...|+|||| ..|+.+........+. ...+.+.++||.-..
T Consensus 4 g~pVlFIhG---~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~ 51 (225)
T PF07819_consen 4 GIPVLFIHG---NAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEEL 51 (225)
T ss_pred CCEEEEECc---CCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccc
Confidence 357899999 3444332222222221 115678888887654
No 123
>KOG4153|consensus
Probab=44.42 E-value=20 Score=23.63 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.2
Q ss_pred CCCCceEEEEEeCCc
Q psy9478 13 QTTLLPVMVWIHGGG 27 (71)
Q Consensus 13 ~~~~~pviv~iHGGg 27 (71)
-..++||.+.+|||.
T Consensus 253 ~~~~KpvFlVfHGgS 267 (358)
T KOG4153|consen 253 CKSKKPVFLVFHGGS 267 (358)
T ss_pred ccccCceEEEEeCCC
Confidence 346789999999994
No 124
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=43.67 E-value=22 Score=25.16 Aligned_cols=15 Identities=33% Similarity=0.913 Sum_probs=12.5
Q ss_pred CCCCCceEEEEEeCC
Q psy9478 12 AQTTLLPVMVWIHGG 26 (71)
Q Consensus 12 ~~~~~~pviv~iHGG 26 (71)
+...++|+++|+-||
T Consensus 96 ndp~~rPvi~wlNGG 110 (498)
T COG2939 96 NDPANRPVIFWLNGG 110 (498)
T ss_pred CCCCCCceEEEecCC
Confidence 445678999999998
No 125
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=43.67 E-value=14 Score=24.79 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=12.1
Q ss_pred EEEEEeCCccccCCCC
Q psy9478 19 VMVWIHGGGFAYGHGN 34 (71)
Q Consensus 19 viv~iHGGg~~~g~~~ 34 (71)
-.+.+|||||-.-..+
T Consensus 222 ~s~vi~~GGwK~~~~e 237 (365)
T PF04443_consen 222 GSIVIHGGGWKGRRKE 237 (365)
T ss_pred CCEEEeCCCCCccccC
Confidence 4677999999876554
No 126
>KOG1282|consensus
Probab=43.57 E-value=22 Score=24.70 Aligned_cols=17 Identities=24% Similarity=0.653 Sum_probs=12.6
Q ss_pred CCCCceEEEEEeCCccc
Q psy9478 13 QTTLLPVMVWIHGGGFA 29 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~ 29 (71)
..+..|+|+|+-||==+
T Consensus 69 ~P~~dPlvLWLnGGPGC 85 (454)
T KOG1282|consen 69 NPETDPLVLWLNGGPGC 85 (454)
T ss_pred CCCCCCEEEEeCCCCCc
Confidence 34557999999999443
No 127
>KOG2624|consensus
Probab=43.31 E-value=47 Score=22.79 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=30.0
Q ss_pred CCceEEEEEeC-----CccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 15 TLLPVMVWIHG-----GGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 15 ~~~pviv~iHG-----Gg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.++|+++..|| ..|+...++ ...+=.++++|+-|..-|-|
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~--~sLaf~LadaGYDVWLgN~R 115 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPE--QSLAFLLADAGYDVWLGNNR 115 (403)
T ss_pred CCCCcEEEeeccccccccceecCcc--ccHHHHHHHcCCceeeecCc
Confidence 78899999998 445544433 45667788889888888877
No 128
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=43.13 E-value=22 Score=17.93 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=13.8
Q ss_pred CCCceEEEEEeCCcccc
Q psy9478 14 TTLLPVMVWIHGGGFAY 30 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~ 30 (71)
..+.|.+.|.|.|.-+.
T Consensus 9 G~P~P~i~W~k~~~~i~ 25 (75)
T cd05892 9 AIPPPKIFWKRNNEMVQ 25 (75)
T ss_pred ecCCCeEEEEECCEECc
Confidence 45789999999987664
No 129
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=42.96 E-value=29 Score=20.20 Aligned_cols=39 Identities=13% Similarity=-0.041 Sum_probs=23.7
Q ss_pred CceEEEEEeCCccccCCCCCCCc---hHHHHhcCCcEEEEeC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAY---GPEFLMNKNVILVTVN 54 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~---~~~~~~~~g~~vvsv~ 54 (71)
.+++||+++.++|+..-...... ....+.+.|+.++.|.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is 70 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVS 70 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46899999999998655432111 2234445566666664
No 130
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=41.26 E-value=7 Score=26.24 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=22.4
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeCCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYRL 57 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~YRl 57 (71)
.||+|++-|.+=...... .......+|++ |..++.+++|-
T Consensus 29 gpifl~~ggE~~~~~~~~-~~~~~~~lA~~~~a~~v~lEHRy 69 (434)
T PF05577_consen 29 GPIFLYIGGEGPIEPFWI-NNGFMWELAKEFGALVVALEHRY 69 (434)
T ss_dssp SEEEEEE--SS-HHHHHH-H-HHHHHHHHHHTEEEEEE--TT
T ss_pred CCEEEEECCCCccchhhh-cCChHHHHHHHcCCcEEEeehhh
Confidence 799999977654432211 11244566666 99999999993
No 131
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=41.16 E-value=15 Score=18.78 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=17.8
Q ss_pred CceEEEEEeCCccccCCCCCCCc-hHHHHhcCCcEEE
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAY-GPEFLMNKNVILV 51 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~-~~~~~~~~g~~vv 51 (71)
+.|.++.+|||.= +.-+. ..++..++|+.++
T Consensus 30 ~~~~~~lvhGga~-----~GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 30 RHPDMVLVHGGAP-----KGADRIAARWARERGVPVI 61 (71)
T ss_pred hCCCEEEEECCCC-----CCHHHHHHHHHHHCCCeeE
Confidence 3488899999852 22233 3345545576554
No 132
>PF03283 PAE: Pectinacetylesterase
Probab=40.92 E-value=24 Score=23.62 Aligned_cols=19 Identities=16% Similarity=0.524 Sum_probs=15.5
Q ss_pred CCceEEEEEeCCccccCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHG 33 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~ 33 (71)
...-.|||+-||||+....
T Consensus 48 ~s~~~li~leGGG~C~~~~ 66 (361)
T PF03283_consen 48 GSNKWLIFLEGGGWCWDAE 66 (361)
T ss_pred CCceEEEEeccchhcCChh
Confidence 4567999999999998743
No 133
>PLN02209 serine carboxypeptidase
Probab=40.91 E-value=27 Score=24.03 Aligned_cols=14 Identities=29% Similarity=0.961 Sum_probs=11.5
Q ss_pred CCCCceEEEEEeCC
Q psy9478 13 QTTLLPVMVWIHGG 26 (71)
Q Consensus 13 ~~~~~pviv~iHGG 26 (71)
..+..|+++|+-||
T Consensus 64 ~~~~~Pl~lWlnGG 77 (437)
T PLN02209 64 NPQEDPLIIWLNGG 77 (437)
T ss_pred CCCCCCEEEEECCC
Confidence 34567999999999
No 134
>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria. VSR recognises a TG mismatched base pair, generated after spontaneous deamination of methylated cytosines, and cleaves the phosphate backbone on the 5' side of the thymine []. GT mismatches can lead to C-to-T transition mutations if not repaired. VSR repairs the mismatches in favour of the G-containing strand. In Escherichia coli, this endonuclease nicks double-stranded DNA within the sequence CT(AT)GN or NT(AT)GG next to the thymidine residue, which is mismatched to 2'-deoxyguanosine []. The incision is mismatch-dependent and strand specific. The structure of VSR is similar to the core structure of restriction endonucleases, which have a 3-layer alpha/beta/alpha topology []. ; GO: 0004519 endonuclease activity, 0006298 mismatch repair; PDB: 1ODG_A 1VSR_A 1CW0_A.
Probab=40.65 E-value=18 Score=18.99 Aligned_cols=14 Identities=7% Similarity=0.290 Sum_probs=10.2
Q ss_pred CceEEEEEeCCccc
Q psy9478 16 LLPVMVWIHGGGFA 29 (71)
Q Consensus 16 ~~pviv~iHGGg~~ 29 (71)
+.-+.||+||--|-
T Consensus 55 ~~k~aIFVdGCFWH 68 (75)
T PF03852_consen 55 KYKIAIFVDGCFWH 68 (75)
T ss_dssp GGTEEEEEE-TTTT
T ss_pred CCCEEEEEecceeC
Confidence 34589999999884
No 135
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=39.76 E-value=28 Score=23.89 Aligned_cols=14 Identities=29% Similarity=0.971 Sum_probs=11.6
Q ss_pred CCCCceEEEEEeCC
Q psy9478 13 QTTLLPVMVWIHGG 26 (71)
Q Consensus 13 ~~~~~pviv~iHGG 26 (71)
..+..|+++|+-||
T Consensus 62 ~~~~~P~~lWlnGG 75 (433)
T PLN03016 62 NPKEDPLLIWLNGG 75 (433)
T ss_pred CcccCCEEEEEcCC
Confidence 34567999999999
No 136
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=39.68 E-value=28 Score=19.41 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.9
Q ss_pred CCceEEEEEeCCccccC
Q psy9478 15 TLLPVMVWIHGGGFAYG 31 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g 31 (71)
.+.|.+||+++|.+..-
T Consensus 81 ~~~PaLvf~R~g~~lG~ 97 (107)
T PF07449_consen 81 RRWPALVFFRDGRYLGA 97 (107)
T ss_dssp TSSSEEEEEETTEEEEE
T ss_pred ccCCeEEEEECCEEEEE
Confidence 46899999999988643
No 137
>PRK07868 acyl-CoA synthetase; Validated
Probab=39.61 E-value=75 Score=24.02 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=25.3
Q ss_pred CceEEEEEeCCccccCCCCCCC----chHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADA----YGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~----~~~~~~~~~g~~vvsv~YR 56 (71)
..|.+|++||-+-. ....+. .....++++|+.|+.+|+.
T Consensus 66 ~~~plllvhg~~~~--~~~~d~~~~~s~v~~L~~~g~~v~~~d~G 108 (994)
T PRK07868 66 VGPPVLMVHPMMMS--ADMWDVTRDDGAVGILHRAGLDPWVIDFG 108 (994)
T ss_pred CCCcEEEECCCCCC--ccceecCCcccHHHHHHHCCCEEEEEcCC
Confidence 45789999994322 211111 1357788889999999965
No 138
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=39.56 E-value=31 Score=27.70 Aligned_cols=37 Identities=8% Similarity=-0.096 Sum_probs=23.3
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
..|.+|++||.+-... ........+. .++.++.+|+|
T Consensus 1370 ~~~~vVllHG~~~s~~---~w~~~~~~L~-~~~rVi~~Dl~ 1406 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTGE---DWIPIMKAIS-GSARCISIDLP 1406 (1655)
T ss_pred CCCeEEEECCCCCCHH---HHHHHHHHHh-CCCEEEEEcCC
Confidence 4579999999865432 2122333333 35889999988
No 139
>KOG4178|consensus
Probab=38.75 E-value=51 Score=22.04 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=26.7
Q ss_pred CCCceEEEEEeCCccccCCCCC---CCchHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNA---DAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~---~~~~~~~~~~~g~~vvsv~YR 56 (71)
...-|+++++||= ++. ...+...++.+|+.++.+|-|
T Consensus 41 ~~~gP~illlHGf------Pe~wyswr~q~~~la~~~~rviA~Dlr 80 (322)
T KOG4178|consen 41 PGDGPIVLLLHGF------PESWYSWRHQIPGLASRGYRVIAPDLR 80 (322)
T ss_pred CCCCCEEEEEccC------CccchhhhhhhhhhhhcceEEEecCCC
Confidence 3456888988872 222 235667788889999999988
No 140
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=38.37 E-value=24 Score=19.02 Aligned_cols=16 Identities=6% Similarity=0.119 Sum_probs=12.4
Q ss_pred CCCCceEEEEEeCCcc
Q psy9478 13 QTTLLPVMVWIHGGGF 28 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~ 28 (71)
..+.++++|++|+-..
T Consensus 14 k~~~K~llv~~~~~~c 29 (114)
T cd02958 14 KSEKKWLLVYLQSEDE 29 (114)
T ss_pred HhhCceEEEEEecCCc
Confidence 3457799999999754
No 141
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=38.00 E-value=35 Score=22.11 Aligned_cols=40 Identities=8% Similarity=-0.207 Sum_probs=23.3
Q ss_pred ceEEEEEeCCccccCCC---C-----CCCch---HHHHhcCCcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHG---N-----ADAYG---PEFLMNKNVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~---~-----~~~~~---~~~~~~~g~~vvsv~YR 56 (71)
.|.||++||=+...-.. . ..... .+.+..+++.|+.+|+|
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~ 81 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVL 81 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCC
Confidence 47899999965422111 1 00111 12344568999999999
No 142
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=37.57 E-value=15 Score=19.02 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=15.8
Q ss_pred CCCCceEEEEEeCCccccCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGH 32 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~ 32 (71)
...+.|.+-|+|+|--+..+
T Consensus 8 ~G~P~Pti~W~kng~~l~~~ 27 (79)
T cd05855 8 KGNPKPTLQWFHEGAILNES 27 (79)
T ss_pred eEeCCCceEEEECCEECCCC
Confidence 45688999999999776544
No 143
>TIGR00632 vsr DNA mismatch endonuclease Vsr. All proteins in this family for which functions are known are G:T mismatch endonucleases that function in a specialized mismatch repair process used usually to repair G:T mismatches in specific sections of the genome. This family was based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Members of this family typically are found near to a DNA cytosine methyltransferase.
Probab=37.40 E-value=28 Score=19.76 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=11.6
Q ss_pred CCceEEEEEeCCccc
Q psy9478 15 TLLPVMVWIHGGGFA 29 (71)
Q Consensus 15 ~~~pviv~iHGGg~~ 29 (71)
.+.-++||+||+-|-
T Consensus 54 ~~~klaIfVDGcfWH 68 (117)
T TIGR00632 54 DEYRCVIFIHGCFWH 68 (117)
T ss_pred cCCCEEEEEcccccc
Confidence 345699999998765
No 144
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=37.02 E-value=36 Score=20.19 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=20.4
Q ss_pred EEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 19 VMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 19 viv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
.++.+|++| |+...+...++.+......|..+++.
T Consensus 2 ~lf~~p~~g---G~~~~y~~la~~l~~~~~~v~~i~~~ 36 (229)
T PF00975_consen 2 PLFCFPPAG---GSASSYRPLARALPDDVIGVYGIEYP 36 (229)
T ss_dssp EEEEESSTT---CSGGGGHHHHHHHTTTEEEEEEECST
T ss_pred eEEEEcCCc---cCHHHHHHHHHhCCCCeEEEEEEecC
Confidence 577888886 44443334445554433666777665
No 145
>cd02417 Peptidase_C39_likeA A sub-family of peptidase C39 which contains Cyclolysin and Hemolysin processing peptidases. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is not conserved in this
Probab=36.81 E-value=33 Score=18.35 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=13.9
Q ss_pred CCCCceEEEEEeCCcccc
Q psy9478 13 QTTLLPVMVWIHGGGFAY 30 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~ 30 (71)
.+-..|+|++..+|.|..
T Consensus 66 ~~~~lP~I~~~~~g~~~V 83 (121)
T cd02417 66 ARLPLPALAWDDDGGHFI 83 (121)
T ss_pred ccCCCCEEEEccCCCEEE
Confidence 344689999998887765
No 146
>KOG2948|consensus
Probab=36.64 E-value=21 Score=23.65 Aligned_cols=20 Identities=25% Similarity=0.600 Sum_probs=17.0
Q ss_pred CCceEEEEEeCCccccCCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGN 34 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~ 34 (71)
..-|-.+|+|-.||+.|+++
T Consensus 290 SgIpgc~FVH~SGFIGgn~T 309 (327)
T KOG2948|consen 290 SGIPGCIFVHASGFIGGNKT 309 (327)
T ss_pred cCCCCeEEEeecccccCccc
Confidence 34588999999999988876
No 147
>COG4843 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.59 E-value=12 Score=22.16 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=9.1
Q ss_pred EeCCccccCCC
Q psy9478 23 IHGGGFAYGHG 33 (71)
Q Consensus 23 iHGGg~~~g~~ 33 (71)
||||-|+-|-+
T Consensus 163 ihGGFWvK~vr 173 (179)
T COG4843 163 IHGGFWVKGVR 173 (179)
T ss_pred eecceehHHHH
Confidence 89999987754
No 148
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=36.22 E-value=27 Score=19.89 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=21.8
Q ss_pred ceEEEEEeCCccccCCCCCCCchHHHHhcC--CcEEEEeCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNK--NVILVTVNYR 56 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~~~~~~~~~~~~~--g~~vvsv~YR 56 (71)
.|.++++||.......-.. ....+... .+.++.+|.|
T Consensus 21 ~~~i~~~hg~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~ 59 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRP---VFKVLPALAARYRVIAPDLR 59 (282)
T ss_pred CCeEEEeCCCCCchhhhHH---HHHHhhccccceEEEEeccc
Confidence 4589999999754443221 11222222 2788888888
No 149
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=35.74 E-value=23 Score=23.34 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=16.1
Q ss_pred CceEEEEEeCCccccCCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGN 34 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~ 34 (71)
--|-.+|+|-|||+.++++
T Consensus 275 GIpGc~F~Ha~gFig~~kt 293 (306)
T COG4286 275 GIPGCIFCHAGGFIGGNKT 293 (306)
T ss_pred CCCCeEEEecccceecccc
Confidence 4578899999999988766
No 150
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=35.35 E-value=46 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=25.9
Q ss_pred CCCCceEEEEEeCCcccc-----CCCCCCCchHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAY-----GHGNADAYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~-----g~~~~~~~~~~~~~~~g~~vvsv~YR 56 (71)
...+.||++-.+=.=+.. +...........++..|++||.+|=|
T Consensus 41 ~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvR 89 (563)
T COG2936 41 GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVR 89 (563)
T ss_pred CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEeccc
Confidence 347889999888111111 11111111124688889999999988
No 151
>KOG2872|consensus
Probab=35.20 E-value=69 Score=21.52 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=25.2
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGI 59 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap 59 (71)
...|.++|.-|+|+. ...++..|+-||..|....|
T Consensus 250 ~~vPmi~fakG~g~~----------Le~l~~tG~DVvgLDWTvdp 284 (359)
T KOG2872|consen 250 APVPMILFAKGSGGA----------LEELAQTGYDVVGLDWTVDP 284 (359)
T ss_pred CCCceEEEEcCcchH----------HHHHHhcCCcEEeecccccH
Confidence 345999999988764 34566667778777777665
No 152
>PLN00050 expansin A; Provisional
Probab=34.88 E-value=24 Score=22.64 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=23.5
Q ss_pred CCccccCCCCCCCchH---HHHhcCCcEEEEeCCCCCCcc
Q psy9478 25 GGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRLGILG 61 (71)
Q Consensus 25 GGg~~~g~~~~~~~~~---~~~~~~g~~vvsv~YRlap~G 61 (71)
+|||+.+.....+... ..+++...-++.|.||..|..
T Consensus 112 ~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~ 151 (247)
T PLN00050 112 DGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACR 151 (247)
T ss_pred CCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCc
Confidence 5889887655322211 445555556779999988764
No 153
>PRK11071 esterase YqiA; Provisional
Probab=34.79 E-value=28 Score=20.75 Aligned_cols=36 Identities=8% Similarity=0.276 Sum_probs=21.1
Q ss_pred eEEEEEeCCccccCCCCCCC--chHHHHhcC--CcEEEEeCCC
Q psy9478 18 PVMVWIHGGGFAYGHGNADA--YGPEFLMNK--NVILVTVNYR 56 (71)
Q Consensus 18 pviv~iHGGg~~~g~~~~~~--~~~~~~~~~--g~~vvsv~YR 56 (71)
|.+|++||-+ ++..+.. .....+++. ++.++.+|.+
T Consensus 2 p~illlHGf~---ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~ 41 (190)
T PRK11071 2 STLLYLHGFN---SSPRSAKATLLKNWLAQHHPDIEMIVPQLP 41 (190)
T ss_pred CeEEEECCCC---CCcchHHHHHHHHHHHHhCCCCeEEeCCCC
Confidence 6899999953 2222211 123444432 7788888877
No 154
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=33.89 E-value=67 Score=20.73 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=10.2
Q ss_pred cCCcEEEEeCCC
Q psy9478 45 NKNVILVTVNYR 56 (71)
Q Consensus 45 ~~g~~vvsv~YR 56 (71)
.+++.|+.+|.|
T Consensus 97 ~~~~~Vi~~Dl~ 108 (343)
T PRK08775 97 PARFRLLAFDFI 108 (343)
T ss_pred ccccEEEEEeCC
Confidence 347999999999
No 155
>KOG0368|consensus
Probab=33.01 E-value=31 Score=28.15 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCceEEEEEe------CCccccCCCCCCCchHHHHhc
Q psy9478 15 TLLPVMVWIH------GGGFAYGHGNADAYGPEFLMN 45 (71)
Q Consensus 15 ~~~pviv~iH------GGg~~~g~~~~~~~~~~~~~~ 45 (71)
-+.||+|||. ||.|+.-++..........|+
T Consensus 1942 YkQPv~vYIPp~gELRGGsWvVvD~tIn~~~memyAD 1978 (2196)
T KOG0368|consen 1942 YKQPVLVYIPPMGELRGGSWVVVDPTINPDQMEMYAD 1978 (2196)
T ss_pred hCCceEEEcCcchhhcCceEEEEcCccCHHHHHHHhh
Confidence 3679999988 999999988865544444443
No 156
>PF06184 Potex_coat: Potexvirus coat protein; InterPro: IPR010392 This entry represents coat proteins found in several satellite viruses, including satellite panicum mosaic virus [], satellite tobacco mosaic virus [], and satellite tobacco necrosis virus. The coat proteins of satellite viruses consist of a beta-sandwich jelly-roll fold, with usually eight strands making up the two sheets, although some members can have an extra 1-2 strands. The characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies. Although the satellite virus coat proteins share the same jelly-roll fold, they differ in the arrangement of their secondary structural elements and in the interactions of adjacent subunits [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1STM_E.
Probab=32.92 E-value=10 Score=21.91 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=10.5
Q ss_pred CCcEEEEeCCCCCC
Q psy9478 46 KNVILVTVNYRLGI 59 (71)
Q Consensus 46 ~g~~vvsv~YRlap 59 (71)
.+.++|.+.||++|
T Consensus 134 ~n~v~v~~~~r~ap 147 (153)
T PF06184_consen 134 SNTVIVQICFRVAP 147 (153)
T ss_dssp SEEEEEEEEEEE--
T ss_pred CceEEEEEEEeeCc
Confidence 47889999999998
No 157
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=32.73 E-value=59 Score=18.74 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=18.2
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhc
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMN 45 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~ 45 (71)
.+.++|.++-+||. .|..+ .+..+.+|+
T Consensus 48 ~~p~KpLVlSfHG~---tGtGK--n~v~~liA~ 75 (127)
T PF06309_consen 48 PNPRKPLVLSFHGW---TGTGK--NFVSRLIAE 75 (127)
T ss_pred CCCCCCEEEEeecC---CCCcH--HHHHHHHHH
Confidence 45678999999997 34433 355555554
No 158
>PF10021 DUF2263: Uncharacterized protein conserved in bacteria (DUF2263); InterPro: IPR019261 This domain, found in various hypothetical bacterial and eukaryotic proteins, has no known function. ; PDB: 3SIJ_A 3SIG_A 3SII_A 3SIH_A.
Probab=32.59 E-value=10 Score=22.16 Aligned_cols=12 Identities=42% Similarity=0.761 Sum_probs=8.3
Q ss_pred eCCccccCCCCC
Q psy9478 24 HGGGFAYGHGNA 35 (71)
Q Consensus 24 HGGg~~~g~~~~ 35 (71)
.||||..|....
T Consensus 89 PGGG~~~Ga~AQ 100 (148)
T PF10021_consen 89 PGGGFLNGARAQ 100 (148)
T ss_dssp TTTTGGGT--SH
T ss_pred CCCCcccCcchh
Confidence 699999997653
No 159
>COG0627 Predicted esterase [General function prediction only]
Probab=32.46 E-value=81 Score=20.85 Aligned_cols=42 Identities=12% Similarity=-0.091 Sum_probs=25.3
Q ss_pred CCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVN 54 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~ 54 (71)
.+++.||+++.||=.-..-+--......+...+.|+++++.+
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~ 91 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPD 91 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCC
Confidence 467889999999864322111111234455556699998874
No 160
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=31.98 E-value=68 Score=16.32 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=15.7
Q ss_pred cCCCCCCceEEEEEeCCccccCC
Q psy9478 10 KVAQTTLLPVMVWIHGGGFAYGH 32 (71)
Q Consensus 10 ~~~~~~~~pviv~iHGGg~~~g~ 32 (71)
..+++.++|+++. .|+-++.|-
T Consensus 43 ~~Sptg~LP~L~~-~~~~~vsg~ 64 (72)
T PF10568_consen 43 WLSPTGELPALID-SGGTWVSGF 64 (72)
T ss_pred CcCCCCCCCEEEE-CCCcEEECH
Confidence 3456778999887 677777653
No 161
>KOG2382|consensus
Probab=31.80 E-value=55 Score=21.80 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=31.6
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeCCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYRL 57 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~YRl 57 (71)
.+.|.++.+||= .|++.+.....+.+++. +.-+.++|-|-
T Consensus 50 ~~~Pp~i~lHGl---~GS~~Nw~sv~k~Ls~~l~~~v~~vd~Rn 90 (315)
T KOG2382|consen 50 ERAPPAIILHGL---LGSKENWRSVAKNLSRKLGRDVYAVDVRN 90 (315)
T ss_pred CCCCceEEeccc---ccCCCCHHHHHHHhcccccCceEEEeccc
Confidence 467899999994 78887766777777777 88888888773
No 162
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=31.80 E-value=37 Score=17.14 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=25.3
Q ss_pred CCCceEEEEEeCCccccCCCCCC-----CchHHHHhcCCcEEEEeCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNAD-----AYGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~-----~~~~~~~~~~g~~vvsv~YR 56 (71)
.+.+|++|+++ +-|+..-.... ......+.+++++.+.+|..
T Consensus 15 ~~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETT
T ss_pred HcCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcC
Confidence 45689999995 66776543321 11223323468888888774
No 163
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=31.04 E-value=50 Score=18.26 Aligned_cols=40 Identities=5% Similarity=-0.155 Sum_probs=21.3
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhc-CCcEEEEeCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMN-KNVILVTVNY 55 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~-~g~~vvsv~Y 55 (71)
.++++|++.-+.|+..-............+ .|+.++.++.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~ 66 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISA 66 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 458999988877754333221122222222 2677766654
No 164
>PRK15000 peroxidase; Provisional
Probab=30.70 E-value=54 Score=19.89 Aligned_cols=39 Identities=13% Similarity=0.052 Sum_probs=23.8
Q ss_pred CceEEEEEeCCccccCCCCCCCc---hHHHHhcCCcEEEEeC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAY---GPEFLMNKNVILVTVN 54 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~---~~~~~~~~g~~vvsv~ 54 (71)
..+++|++|-+.|+..-...... ....+.++|+.++.++
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS 75 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVS 75 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45899999999998665543211 2234445566555544
No 165
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=30.48 E-value=87 Score=19.40 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=26.1
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNY 55 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~Y 55 (71)
...-+|+.-||-|=.+.|... +..+..++.+|+.|+..++
T Consensus 12 ~~~~tilLaHGAGasmdSt~m-~~~a~~la~~G~~vaRfef 51 (213)
T COG3571 12 PAPVTILLAHGAGASMDSTSM-TAVAAALARRGWLVARFEF 51 (213)
T ss_pred CCCEEEEEecCCCCCCCCHHH-HHHHHHHHhCceeEEEeec
Confidence 334567888998765554332 3455677778998877664
No 166
>KOG1454|consensus
Probab=30.43 E-value=60 Score=21.31 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=22.0
Q ss_pred CCceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNY 55 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~Y 55 (71)
...|.++++||=|- +... .+.....+.+. |..+.++|-
T Consensus 56 ~~~~pvlllHGF~~--~~~~-w~~~~~~L~~~~~~~v~aiDl 94 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFS-WRRVVPLLSKAKGLRVLAIDL 94 (326)
T ss_pred CCCCcEEEeccccC--Cccc-HhhhccccccccceEEEEEec
Confidence 46789999999654 2222 22333333333 677777764
No 167
>KOG0264|consensus
Probab=29.96 E-value=33 Score=23.76 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=11.2
Q ss_pred CCCceEEEEEeCCcc
Q psy9478 14 TTLLPVMVWIHGGGF 28 (71)
Q Consensus 14 ~~~~pviv~iHGGg~ 28 (71)
+...|=++|+|||--
T Consensus 359 ~dgppEllF~HgGH~ 373 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHT 373 (422)
T ss_pred ccCCcceeEEecCcc
Confidence 345688999999943
No 168
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.92 E-value=23 Score=23.40 Aligned_cols=12 Identities=42% Similarity=0.728 Sum_probs=8.6
Q ss_pred EEEEEeCCcccc
Q psy9478 19 VMVWIHGGGFAY 30 (71)
Q Consensus 19 viv~iHGGg~~~ 30 (71)
=.=-+|||||-.
T Consensus 53 e~WaVHGGGFYh 64 (300)
T PF06181_consen 53 ELWAVHGGGFYH 64 (300)
T ss_pred ceeeeecccccc
Confidence 345689999943
No 169
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=29.68 E-value=45 Score=20.33 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=8.9
Q ss_pred CCceEEEEEeCC
Q psy9478 15 TLLPVMVWIHGG 26 (71)
Q Consensus 15 ~~~pviv~iHGG 26 (71)
++.-++|++||=
T Consensus 2 ~~~hLvV~vHGL 13 (217)
T PF05057_consen 2 KPVHLVVFVHGL 13 (217)
T ss_pred CCCEEEEEeCCC
Confidence 345688999984
No 170
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=29.53 E-value=30 Score=22.93 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=15.3
Q ss_pred ceEEEEEeCCccccCCCC
Q psy9478 17 LPVMVWIHGGGFAYGHGN 34 (71)
Q Consensus 17 ~pviv~iHGGg~~~g~~~ 34 (71)
-|-.+|+|-+||+.|.++
T Consensus 288 I~g~vFvH~sGFigg~kt 305 (318)
T PF03690_consen 288 IPGAVFVHASGFIGGAKT 305 (318)
T ss_pred CCCcEEEcCCCCeeecCC
Confidence 467899999999988766
No 171
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=29.47 E-value=58 Score=21.88 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=16.1
Q ss_pred EEEEEeCCccccCCCCCCCchHHHHhcC
Q psy9478 19 VMVWIHGGGFAYGHGNADAYGPEFLMNK 46 (71)
Q Consensus 19 viv~iHGGg~~~g~~~~~~~~~~~~~~~ 46 (71)
.+|++||||=...-=......++.+.+.
T Consensus 88 ~~i~~~GGGNlGDLypd~q~fRe~Iist 115 (339)
T COG5039 88 DIIFFTGGGNLGDLYPDYQNFREKIIST 115 (339)
T ss_pred ceEEEeCCCchhhcchhhHHHHHHHHHh
Confidence 5899999986432223334455555443
No 172
>KOG2182|consensus
Probab=28.31 E-value=1.4e+02 Score=21.46 Aligned_cols=44 Identities=11% Similarity=0.093 Sum_probs=29.0
Q ss_pred CCCceEEEEEeCCccccCCCCCCC--chHHHHhcCCcEEEEeCCCC
Q psy9478 14 TTLLPVMVWIHGGGFAYGHGNADA--YGPEFLMNKNVILVTVNYRL 57 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g~~~~~~--~~~~~~~~~g~~vvsv~YRl 57 (71)
...-|+.++|-|.|=.....-... ....++.+-|+.|+.+++|.
T Consensus 83 ~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF 128 (514)
T KOG2182|consen 83 KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF 128 (514)
T ss_pred cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec
Confidence 345689999988877663332222 23344444499999999994
No 173
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=28.06 E-value=83 Score=19.46 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=23.0
Q ss_pred EEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCC
Q psy9478 19 VMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNY 55 (71)
Q Consensus 19 viv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~Y 55 (71)
++++---|||.. .+...+..++++|+.|+-+|-
T Consensus 5 ~v~~SGDgGw~~----~d~~~a~~l~~~G~~VvGvds 37 (192)
T PF06057_consen 5 AVFFSGDGGWRD----LDKQIAEALAKQGVPVVGVDS 37 (192)
T ss_pred EEEEeCCCCchh----hhHHHHHHHHHCCCeEEEech
Confidence 445555578852 225677888899999998874
No 174
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=27.56 E-value=22 Score=20.68 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=7.0
Q ss_pred EEeCCccccC
Q psy9478 22 WIHGGGFAYG 31 (71)
Q Consensus 22 ~iHGGg~~~g 31 (71)
|+|||.|.--
T Consensus 1 ~f~ggv~G~L 10 (133)
T PF07680_consen 1 YFHGGVWGPL 10 (133)
T ss_pred Ceecceeeee
Confidence 5788888543
No 175
>PLN00193 expansin-A; Provisional
Probab=27.54 E-value=41 Score=21.69 Aligned_cols=37 Identities=14% Similarity=-0.050 Sum_probs=23.3
Q ss_pred CCccccCCCCCCCchH---HHHhcCCcEEEEeCCCCCCcc
Q psy9478 25 GGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRLGILG 61 (71)
Q Consensus 25 GGg~~~g~~~~~~~~~---~~~~~~g~~vvsv~YRlap~G 61 (71)
.|+|+.+.....+... ..+++...-++.|.||..|..
T Consensus 120 ~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~ 159 (256)
T PLN00193 120 NGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCK 159 (256)
T ss_pred CCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccc
Confidence 4889887654322211 344555566788999988765
No 176
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=27.53 E-value=30 Score=21.57 Aligned_cols=28 Identities=21% Similarity=0.064 Sum_probs=14.5
Q ss_pred hcCCc-EEEEeCCCCCCc-----ccccCCCcccC
Q psy9478 44 MNKNV-ILVTVNYRLGIL-----GHVILSTALRY 71 (71)
Q Consensus 44 ~~~g~-~vvsv~YRlap~-----Gf~~~~~~~~~ 71 (71)
|..++ +-..++|-|+-. --|-.++|++|
T Consensus 93 AgagAv~g~~~GY~lG~~m~rp~~~F~np~Eery 126 (217)
T smart00157 93 AAAGAVVGGLGGYMLGSAMSRPLIHFGNDYEDRY 126 (217)
T ss_pred hhcchhhhhccccccccccCCCccccCChHHHHH
Confidence 33344 336777877651 23344566554
No 177
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=27.42 E-value=1.4e+02 Score=21.26 Aligned_cols=40 Identities=5% Similarity=-0.035 Sum_probs=25.2
Q ss_pred CceEEEEEeCCccccCCCC----CCCchHHHHhcCCcEEEEeCCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGN----ADAYGPEFLMNKNVILVTVNYRL 57 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~----~~~~~~~~~~~~g~~vvsv~YRl 57 (71)
..+.++++|+- +...-- ......+.++++|+.|+.+|.|-
T Consensus 187 ~~~PlLiVp~~--i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrg 230 (532)
T TIGR01838 187 HKTPLLIVPPW--INKYYILDLRPQNSLVRWLVEQGHTVFVISWRN 230 (532)
T ss_pred CCCcEEEECcc--cccceeeecccchHHHHHHHHCCcEEEEEECCC
Confidence 34556777773 211111 11246688888999999999983
No 178
>PTZ00445 p36-lilke protein; Provisional
Probab=27.18 E-value=29 Score=21.90 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=22.5
Q ss_pred EEEEEeCCccccCCCCC------CCc----hHHHHhcCCcEEEEeCCCCC
Q psy9478 19 VMVWIHGGGFAYGHGNA------DAY----GPEFLMNKNVILVTVNYRLG 58 (71)
Q Consensus 19 viv~iHGGg~~~g~~~~------~~~----~~~~~~~~g~~vvsv~YRla 58 (71)
.+|=+|.|||....... .+. ....+.+.|+.++.+-+.-.
T Consensus 53 TlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 53 TMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred hhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 34568999999886111 111 22333345777766666543
No 179
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=27.18 E-value=46 Score=22.69 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=13.0
Q ss_pred CCceEEEEEeCCccccCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHG 33 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~ 33 (71)
.++|-|||+|+++ +.|..
T Consensus 46 ~~r~~viWLq~~~-CtGcs 63 (371)
T PRK10468 46 PQRPPVIWIGAQE-CTGCT 63 (371)
T ss_pred CCCCcEEEEeCCC-CCCcH
Confidence 4668899999994 44543
No 180
>KOG4840|consensus
Probab=27.15 E-value=1.6e+02 Score=19.29 Aligned_cols=47 Identities=19% Similarity=0.066 Sum_probs=29.2
Q ss_pred CceEEEEEeCCccccCCCCCC--CchHHHHhcCCcEEEEeCCCCCCccccc
Q psy9478 16 LLPVMVWIHGGGFAYGHGNAD--AYGPEFLMNKNVILVTVNYRLGILGHVI 64 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~--~~~~~~~~~~g~~vvsv~YRlap~Gf~~ 64 (71)
.+.-+|||- |...|-.... ....+.+.+.++.+|-+.-|-++-||=+
T Consensus 35 ~~~~vvfiG--GLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt 83 (299)
T KOG4840|consen 35 ESVKVVFIG--GLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGT 83 (299)
T ss_pred eEEEEEEEc--ccCCCccccccHHHHHHHHhhccceeeeeecccccccccc
Confidence 334555553 3444444332 2344666677999999999999877643
No 181
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=26.22 E-value=67 Score=18.43 Aligned_cols=10 Identities=50% Similarity=0.886 Sum_probs=8.1
Q ss_pred eEEEEEeCCc
Q psy9478 18 PVMVWIHGGG 27 (71)
Q Consensus 18 pviv~iHGGg 27 (71)
|-++||||=.
T Consensus 14 ~ryvFIHGpe 23 (122)
T PF12566_consen 14 PRYVFIHGPE 23 (122)
T ss_pred ceEEEEeCCC
Confidence 4799999964
No 182
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=26.19 E-value=33 Score=23.63 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=19.8
Q ss_pred CCCCceEEEEEeCCccccCCCCCCC-chHHHHhcCCcEEEEeCCC
Q psy9478 13 QTTLLPVMVWIHGGGFAYGHGNADA-YGPEFLMNKNVILVTVNYR 56 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~g~~~~~~-~~~~~~~~~g~~vvsv~YR 56 (71)
.+++.|+||.+-|-- +-+++.. .....++.+|+.++++|--
T Consensus 186 ~~~p~P~VIv~gGlD---s~qeD~~~l~~~~l~~rGiA~LtvDmP 227 (411)
T PF06500_consen 186 GEKPYPTVIVCGGLD---SLQEDLYRLFRDYLAPRGIAMLTVDMP 227 (411)
T ss_dssp SSS-EEEEEEE--TT---S-GGGGHHHHHCCCHHCT-EEEEE--T
T ss_pred CCCCCCEEEEeCCcc---hhHHHHHHHHHHHHHhCCCEEEEEccC
Confidence 456788887754431 1122111 2234567789999999854
No 183
>PF09757 Arb2: Arb2 domain; InterPro: IPR019154 The fission yeast Argonaute siRNA chaperone (ARC) complex contains the Argonaute protein Ago1 and two previously uncharacterised proteins, Arb1 and Arb2, both of which are required for histone H3 Lys9 (H3-K9) methylation, heterochromatin assembly and siRNA generation []. This entry represents a region found in both Arb2 and the Hda1 protein. ; PDB: 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G.
Probab=25.78 E-value=23 Score=21.10 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCccccC
Q psy9478 15 TLLPVMVWIHGGGFAYG 31 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g 31 (71)
+...++|++||.|-+..
T Consensus 97 ~~~~llViih~~g~~wa 113 (178)
T PF09757_consen 97 TAKKLLVIIHGSGVIWA 113 (178)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 45679999999876443
No 184
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=25.01 E-value=89 Score=17.55 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=23.2
Q ss_pred CceEEEEEeCCccccCCCCCCC---chHHHHhcCCcEEEEeCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADA---YGPEFLMNKNVILVTVNY 55 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~---~~~~~~~~~g~~vvsv~Y 55 (71)
.++++|++....|+..-..... ...+.+.+.|+.+++|+.
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~ 72 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGIST 72 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4578988887766654332111 122344456788888865
No 185
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=24.75 E-value=61 Score=15.23 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=12.5
Q ss_pred HHHhcCCcEEEEeCCC
Q psy9478 41 EFLMNKNVILVTVNYR 56 (71)
Q Consensus 41 ~~~~~~g~~vvsv~YR 56 (71)
+.+...|+.|+.|.|-
T Consensus 25 r~L~~~G~~Vi~Ip~~ 40 (58)
T PF08373_consen 25 RHLKALGYKVISIPYY 40 (58)
T ss_pred HHHHHCCCEEEEecHH
Confidence 5666679999999873
No 186
>PF13227 DUF4035: Protein of unknown function (DUF4035)
Probab=24.44 E-value=34 Score=16.78 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=5.9
Q ss_pred CCCCCccc
Q psy9478 55 YRLGILGH 62 (71)
Q Consensus 55 YRlap~Gf 62 (71)
||.+|+|=
T Consensus 4 dr~~P~G~ 11 (53)
T PF13227_consen 4 DREQPFGD 11 (53)
T ss_pred cccCCcch
Confidence 78888773
No 187
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=23.22 E-value=74 Score=15.70 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=13.8
Q ss_pred CCCceEEEEEeCCccccC
Q psy9478 14 TTLLPVMVWIHGGGFAYG 31 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g 31 (71)
..+.|.+.|.|.|.-+..
T Consensus 9 G~P~P~v~W~k~~~~i~~ 26 (75)
T cd05744 9 AIPPPQIFWKKNNEMLTY 26 (75)
T ss_pred ecCCCeEEEEECCEECCC
Confidence 456799999999876643
No 188
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=22.83 E-value=35 Score=22.57 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=9.9
Q ss_pred EEEEeCCccccCCC
Q psy9478 20 MVWIHGGGFAYGHG 33 (71)
Q Consensus 20 iv~iHGGg~~~g~~ 33 (71)
.|-+|||++.....
T Consensus 4 ~iivHGGAg~~~~~ 17 (319)
T PF01112_consen 4 AIIVHGGAGTISDS 17 (319)
T ss_dssp EEEEEEEEESE-TT
T ss_pred EEEEECCCCCCccc
Confidence 34499999988774
No 189
>KOG2542|consensus
Probab=22.62 E-value=45 Score=23.26 Aligned_cols=14 Identities=29% Similarity=0.627 Sum_probs=10.3
Q ss_pred EEEEeCCCCCCccccc
Q psy9478 49 ILVTVNYRLGILGHVI 64 (71)
Q Consensus 49 ~vvsv~YRlap~Gf~~ 64 (71)
.-.+||| +|||||-
T Consensus 180 lGlTIDY--GPFgFLD 193 (500)
T KOG2542|consen 180 LGLTIDY--GPFGFLD 193 (500)
T ss_pred eeeeecc--CCccccc
Confidence 3467777 7999984
No 190
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=22.60 E-value=49 Score=20.35 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=15.0
Q ss_pred CceEEEEEeCCccccCCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGN 34 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~ 34 (71)
+.--.|+||+||...|.+.
T Consensus 36 k~g~eVyIh~~g~i~gkAk 54 (188)
T COG2411 36 KPGSEVYIHSGGYIIGKAK 54 (188)
T ss_pred CCCCEEEEEECCEEEEEEE
Confidence 4446799999999988765
No 191
>PRK03348 DNA polymerase IV; Provisional
Probab=22.55 E-value=94 Score=21.42 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=18.2
Q ss_pred EeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCCCccc
Q psy9478 23 IHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGILGH 62 (71)
Q Consensus 23 iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRlap~Gf 62 (71)
=||=||+.|+.. |.+-|..+.|-.+-|-
T Consensus 400 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 427 (454)
T PRK03348 400 EYGHGWVQGAGH------------GVVTVRFETRTTGPGP 427 (454)
T ss_pred CCCCcceecCCC------------eEEEEEeccCCCCCCC
Confidence 467778877655 5566666667665554
No 192
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=22.31 E-value=1e+02 Score=16.37 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=15.8
Q ss_pred CccccCCCCCCCch---HHHHhcCCcEEEEeCC
Q psy9478 26 GGFAYGHGNADAYG---PEFLMNKNVILVTVNY 55 (71)
Q Consensus 26 Gg~~~g~~~~~~~~---~~~~~~~g~~vvsv~Y 55 (71)
|+|+.+.....+.. -..+++...-+|.|.|
T Consensus 55 ~~~C~~~~~hfDLS~~AF~~iA~~~~Gvi~v~y 87 (87)
T smart00837 55 GGWCNPPRKHFDLSQPAFEKIAQYKAGIVPVKY 87 (87)
T ss_pred CCccCCCCcCeEcCHHHHHHHhhhcCCEEeeEC
Confidence 67887655432221 1445555555566655
No 193
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=21.98 E-value=49 Score=17.91 Aligned_cols=39 Identities=10% Similarity=0.096 Sum_probs=22.2
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNY 55 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~Y 55 (71)
..|++|++. ..|+..-........+...+.++.++.++.
T Consensus 25 gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~ 63 (127)
T cd03010 25 GKPYLLNVW-ASWCAPCREEHPVLMALARQGRVPIYGINY 63 (127)
T ss_pred CCEEEEEEE-cCcCHHHHHHHHHHHHHHHhcCcEEEEEEC
Confidence 468888887 678766544322222332223577777764
No 194
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=21.76 E-value=61 Score=14.64 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=5.1
Q ss_pred EEEeCCcc
Q psy9478 21 VWIHGGGF 28 (71)
Q Consensus 21 v~iHGGg~ 28 (71)
+|++||--
T Consensus 4 ~~vfGG~~ 11 (49)
T PF13415_consen 4 LYVFGGYD 11 (49)
T ss_pred EEEECCcC
Confidence 67777743
No 195
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=21.70 E-value=99 Score=15.39 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=13.2
Q ss_pred CCCCceEEEEEeCCccc
Q psy9478 13 QTTLLPVMVWIHGGGFA 29 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~ 29 (71)
...+.|.+-|.+.|.-.
T Consensus 8 ~G~P~P~v~W~k~g~~~ 24 (77)
T cd05875 8 KGNPVPTFQWTRNGKFF 24 (77)
T ss_pred cccCCCEEEEEECCEEc
Confidence 34578999999988643
No 196
>TIGR03530 GldJ_short gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. This model represents the GldJ homolog in Cytophaga hutchinsonii and several other species which is of shorter architecture than that found in Flavobacterium johnsoniae and is represented by a separate model (TIGR03524). Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=21.64 E-value=80 Score=21.73 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.2
Q ss_pred CCceEEEEEeCCccccCCCCC
Q psy9478 15 TLLPVMVWIHGGGFAYGHGNA 35 (71)
Q Consensus 15 ~~~pviv~iHGGg~~~g~~~~ 35 (71)
..-|-||+|-||-|.+|+...
T Consensus 61 ~~gp~MV~IPgG~F~MGs~~~ 81 (402)
T TIGR03530 61 IEGPNLKFIEGGRAVLGSFEE 81 (402)
T ss_pred CCCCCeEEECCcEEEeCCCcc
Confidence 344789999999999998753
No 197
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=21.60 E-value=69 Score=16.00 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=14.1
Q ss_pred CCCCceEEEEEeCCcccc
Q psy9478 13 QTTLLPVMVWIHGGGFAY 30 (71)
Q Consensus 13 ~~~~~pviv~iHGGg~~~ 30 (71)
...+.|.+.|.+.|.-..
T Consensus 8 ~G~P~P~v~W~k~~~~l~ 25 (75)
T cd05893 8 SGVPHPQIFWKKENESLT 25 (75)
T ss_pred eEecCCEEEEEECCEECC
Confidence 346789999999987664
No 198
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=21.44 E-value=57 Score=22.11 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=7.5
Q ss_pred EEEEeCCccc
Q psy9478 20 MVWIHGGGFA 29 (71)
Q Consensus 20 iv~iHGGg~~ 29 (71)
+|.+||||-.
T Consensus 51 ~vlVHGgg~~ 60 (429)
T TIGR01890 51 LVLVHGARPQ 60 (429)
T ss_pred EEEEcCCCHH
Confidence 5678999844
No 199
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=21.40 E-value=1e+02 Score=18.53 Aligned_cols=39 Identities=13% Similarity=-0.044 Sum_probs=22.7
Q ss_pred CceEEEEEeCCccccCCCCCCCc---hHHHHhcCCcEEEEeC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAY---GPEFLMNKNVILVTVN 54 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~---~~~~~~~~g~~vvsv~ 54 (71)
.++++++++-+.|+..-...... ....+.+.|+.++.++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS 72 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVS 72 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34899999999998654432111 1233444566665554
No 200
>cd02425 Peptidase_C39F A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family.
Probab=21.15 E-value=84 Score=16.74 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=13.2
Q ss_pred CCCceEEEEEeCCccccC
Q psy9478 14 TTLLPVMVWIHGGGFAYG 31 (71)
Q Consensus 14 ~~~~pviv~iHGGg~~~g 31 (71)
....|+|++..+|.|+.-
T Consensus 73 ~~~lP~I~~~~~~~~~Vl 90 (126)
T cd02425 73 PLKLPVIIFWNNNHFVVL 90 (126)
T ss_pred hCCCCEEEEEcCCcEEEE
Confidence 346799999877777653
No 201
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=20.66 E-value=2.4e+02 Score=20.88 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=28.6
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLG 58 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRla 58 (71)
+.|.++|-+||-=+.-.+. .........++|-+.|..|-|=+
T Consensus 420 ~~pTll~aYGGF~vsltP~-fs~~~~~WLerGg~~v~ANIRGG 461 (648)
T COG1505 420 ENPTLLYAYGGFNISLTPR-FSGSRKLWLERGGVFVLANIRGG 461 (648)
T ss_pred CCceEEEeccccccccCCc-cchhhHHHHhcCCeEEEEecccC
Confidence 7899999998844443333 23333666677888888888843
No 202
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=20.16 E-value=80 Score=19.74 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=10.6
Q ss_pred CCceEEEEEeCCccc
Q psy9478 15 TLLPVMVWIHGGGFA 29 (71)
Q Consensus 15 ~~~pviv~iHGGg~~ 29 (71)
+.+||++-+||=-|.
T Consensus 98 ~DkPViFafHGYp~~ 112 (203)
T PF09363_consen 98 KDKPVIFAFHGYPWL 112 (203)
T ss_dssp SSS-EEEEESSEHHH
T ss_pred CCCCEEEEcCCCHHH
Confidence 467999999995543
No 203
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=20.12 E-value=1.6e+02 Score=15.59 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=19.7
Q ss_pred CceEEEEEeCCccccCCCCCCCchHHHHhcC-CcEEEEeC
Q psy9478 16 LLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVN 54 (71)
Q Consensus 16 ~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~-g~~vvsv~ 54 (71)
..+++|+++ ..|+........... .+.++ .++.++.+
T Consensus 20 ~k~~vl~F~-~~~C~~C~~~~~~l~-~~~~~~~~i~i~~~ 57 (123)
T cd03011 20 GKPVLVYFW-ATWCPVCRFTSPTVN-QLAADYPVVSVALR 57 (123)
T ss_pred CCEEEEEEE-CCcChhhhhhChHHH-HHHhhCCEEEEEcc
Confidence 368888887 567764443322222 33333 55556554
No 204
>KOG2237|consensus
Probab=20.03 E-value=86 Score=23.24 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=30.3
Q ss_pred CCCCCceEEEEEeCCccccCCCCCCCchHHHHhcCCcEEEEeCCCCC
Q psy9478 12 AQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLG 58 (71)
Q Consensus 12 ~~~~~~pviv~iHGGg~~~g~~~~~~~~~~~~~~~g~~vvsv~YRla 58 (71)
+.....|.+++-|||-=+.-.+.. ......+.++|++++-.|-|=+
T Consensus 465 k~dg~~P~LLygYGay~isl~p~f-~~srl~lld~G~Vla~a~VRGG 510 (712)
T KOG2237|consen 465 KLDGSKPLLLYGYGAYGISLDPSF-RASRLSLLDRGWVLAYANVRGG 510 (712)
T ss_pred hhcCCCceEEEEecccceeecccc-ccceeEEEecceEEEEEeeccC
Confidence 345578999999998555444442 2333445557999888887744
Done!