RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9478
(71 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 86.2 bits (214), Expect = 8e-22
Identities = 30/52 (57%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Query: 17 LPVMVWIHGGGFAYGHGNADAY-GPEFLMNKNVILVTVNYRLGILGHVILST 67
LPVMVWIHGGGF G + D Y GP+ +++V++VT+NYRLG LG LST
Sbjct: 100 LPVMVWIHGGGFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALGF--LST 149
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 69.3 bits (170), Expect = 9e-16
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 4/47 (8%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLM--NKNVILVTVNYRLGILG 61
LPVMVWIHGGGF +G G+ Y + L NVI+V++NYRLG+LG
Sbjct: 95 LPVMVWIHGGGFMFGSGS--LYPGDGLAREGDNVIVVSINYRLGVLG 139
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 67.1 bits (164), Expect = 5e-15
Identities = 24/46 (52%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLM-NKNVILVTVNYRLGILG 61
LPVMV+IHGGG+ G G+ Y L +V++V+VNYRLG LG
Sbjct: 94 LPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALG 139
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 34.1 bits (78), Expect = 0.002
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
PV++++HGGG+ G+ + ++V+V+YRL
Sbjct: 79 APVVLYLHGGGWV--LGSLRTHDALVARLAAAAGAVVVSVDYRL 120
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 31.0 bits (70), Expect = 0.030
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 17 LPVMVWIHGGGFA-YGHGNADAYGPEF--LMNKNVILVTVNYR 56
P++V+IHGG A G+ + PE L + ++ NYR
Sbjct: 394 YPLIVYIHGGPSAQVGYS----FNPEIQVLASAGYAVLAPNYR 432
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 29.9 bits (68), Expect = 0.057
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 9/43 (20%)
Query: 20 MVWIHGGGFAYGHGNADAYGPEFLMNK-----NVILVTVNYRL 57
+V+ HGGGF G+AD + L + ++V+V+YRL
Sbjct: 1 LVYFHGGGFV--LGSADT--HDRLCRRLAAAAGAVVVSVDYRL 39
>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a
fosfomycin biosynthetic gene product, FomA, and similar
proteins found in a wide range of organisms. Together,
the fomA and fomB genes in the fosfomycin biosynthetic
gene cluster of Streptomyces wedmorensis confer
high-level fosfomycin resistance. FomA and FomB
proteins converted fosfomycin to fosfomycin
monophosphate and fosfomycin diphosphate in the
presence of ATP and a magnesium ion, indicating that
FomA and FomB catalyzed phosphorylations of fosfomycin
and fosfomycin monophosphate, respectively. FomA and
related sequences in this CD are members of the Amino
Acid Kinase Superfamily (AAK).
Length = 252
Score = 26.8 bits (60), Expect = 0.85
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 20 MVWIHGGGFAYGHGNADAYG 39
+V +HGGG ++GH A YG
Sbjct: 40 LVLVHGGG-SFGHPKAKEYG 58
>gnl|CDD|239170 cd02769, MopB_DMSOR-BSOR-TMAOR, The MopB_DMSOR-BSOR-TMAOR CD
contains dimethylsulfoxide reductase (DMSOR), biotin
sulfoxide reductase (BSOR), trimethylamine N-oxide
reductase (TMAOR) and other related proteins. DMSOR
always catalyzes the reduction of DMSO to
dimethylsulfide, but its cellular location and
oligomerization state are organism-dependent. For
example, in Rhodobacter sphaeriodes and Rhodobacter
capsulatus, it is an 82-kDa monomeric soluble protein
found in the periplasmic space; in E. coli, it is
membrane-bound and exists as a heterotrimer. BSOR
catalyzes the reduction of biotin sulfixode to biotin,
and is unique among Mo enzymes because no additional
auxiliary proteins or cofactors are required. TMAOR is
similar to DMSOR, but its only natural substrate is
TMAO. Members of this CD belong to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 609
Score = 26.5 bits (59), Expect = 1.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 25 GGGFAYGHGNADAYGP 40
GGGF +G+ ++ GP
Sbjct: 345 GGGFGFGYHYSNGGGP 360
>gnl|CDD|165539 PHA03282, PHA03282, envelope glycoprotein E; Provisional.
Length = 540
Score = 26.4 bits (58), Expect = 1.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 48 VILVTVNYRLGILGHVILSTALRY 71
V +V VN + GHV++STA RY
Sbjct: 349 VCVVYVNGHVHAWGHVVISTAARY 372
>gnl|CDD|220701 pfam10340, DUF2424, Protein of unknown function (DUF2424). This is
a family of proteins conserved in yeasts. The function
is not known.
Length = 374
Score = 25.6 bits (56), Expect = 2.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 18 PVMVWIHGGGFAYG 31
P++++ HGGGFA
Sbjct: 123 PILLYYHGGGFALK 136
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 25.1 bits (55), Expect = 3.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 19 VMVWIHGGGFAYG 31
+ ++HGGGF G
Sbjct: 83 TLFYLHGGGFILG 95
>gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain. The BEACH domain was
described in the BEIGE protein (D1035670) and in the
highly homologous CHS protein. The BEACH domain is
usually followed by a series of WD repeats. The function
of the BEACH domain is unknown.
Length = 280
Score = 24.9 bits (55), Expect = 3.9
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 12/34 (35%)
Query: 38 YGPEFLMNKNVILVTVNYRLGI------LGHVIL 65
Y PEFL+N N + G + V L
Sbjct: 156 YLPEFLVNIN------GFDFGTRQDGEDVDDVEL 183
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 24.9 bits (55), Expect = 3.9
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 16 LLPVMVWIH-GGGFAYGHGN 34
PV+ W GGG A GHGN
Sbjct: 116 FFPVVGWAERGGGDAGGHGN 135
>gnl|CDD|239199 cd02800, tRNA_bind_EcMetRS_like, tRNA-binding-domain-containing
Escherichia coli methionyl-tRNA synthetase
(EcMetRS)-like proteins. This family includes EcMetRS
and Aquifex aeolicus Trbp111 (AaTrbp111). This domain
has general tRNA binding properties. MetRS
aminoacylates methionine transfer RNAs (tRNAmet).
AaTrbp111 is structure-specific molecular chaperone
recognizing the L-shape of the tRNA fold. AaTrbp111
plays a role in nuclear trafficking of tRNAs. The
functional unit of EcMetRs and AaTrbp111 is a
homodimer, this domain acts as the dimerization domain.
Length = 105
Score = 24.4 bits (54), Expect = 4.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 33 GNADAYGPEFLMNKNVILVT 52
G A Y PE L+ K V++V
Sbjct: 45 GIAKFYPPEELVGKKVVVVA 64
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 24.0 bits (53), Expect = 7.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 33 GNADAYGPEFLMNKNVILV 51
G AY PE L+ K V++V
Sbjct: 612 GIKSAYDPEELVGKLVVMV 630
>gnl|CDD|239066 cd02153, tRNA_bindingDomain, The tRNA binding domain is also
known as the Myf domain in literature. This domain is
found in a diverse collection of tRNA binding proteins,
including prokaryotic phenylalanyl tRNA synthetases
(PheRS), methionyl-tRNA synthetases (MetRS), human
tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces
cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex
aeolicus Trbp111, human p43 and human EMAP-II. PheRS,
MetRS and hTyrRS aminoacylate their cognate tRNAs.
Arc1p is a transactivator of yeast methionyl-tRNA and
glutamyl-tRNA synthetases. The molecular chaperones
Trbp111 and CsaA also contain this domain. CsaA has
export related activities; Trbp111 is
structure-specific recognizing the L-shape of the tRNA
fold. This domain has general tRNA binding properties.
In a subset of this family this domain has the added
capability of a cytokine. For example the p43 component
of the Human aminoacyl-tRNA synthetase complex is
cleaved to release EMAP-II cytokine. EMAP-II has
multiple activities during apoptosis, angiogenesis and
inflammation and participates in malignant
transformation. An EMAP-II-like cytokine is released
from hTyrRS upon cleavage. The active cytokine
heptapeptide locates to this domain. For homodimeric
members of this group which include CsaA, Trbp111 and
Escherichia coli MetRS this domain acts as a
dimerization domain.
Length = 99
Score = 23.6 bits (52), Expect = 7.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 33 GNADAYGPEFLMNKNVILVTV 53
G A+ Y PE L+ K V++
Sbjct: 36 GAANVYPPEELVGKKVVVAVN 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.143 0.459
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,526,481
Number of extensions: 263951
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 19
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)