RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9478
(71 letters)
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 100 bits (250), Expect = 6e-27
Identities = 27/49 (55%), Positives = 41/49 (83%)
Query: 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGILG 61
+ LPV+V+IHGGGFA+G G++D +GPE+L++K+VI++T NYRL + G
Sbjct: 111 RFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYG 159
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 89.0 bits (221), Expect = 5e-23
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMN-KNVILVTVNYRLGILG 61
VMVWI+GGGF G D Y ++L + V+LV+++YR+G G
Sbjct: 109 TTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFG 154
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 88.6 bits (220), Expect = 8e-23
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMN-KNVILVTVNYRLGILG 61
V++WI+GGGF G + Y +FL + VI+V++NYR+G LG
Sbjct: 107 ATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALG 152
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 88.2 bits (219), Expect = 1e-22
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYRLGILG 61
PV++WI+GGGF G + D Y FL +LV++NYR+G G
Sbjct: 112 TPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFG 157
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 87.4 bits (217), Expect = 2e-22
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 8 QVKVAQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMN-------KNVILVTVNYRLGIL 60
Q + + LPVM+WI+GG F G + +L + NVI+VT NYR+G L
Sbjct: 89 QGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPL 148
Query: 61 G 61
G
Sbjct: 149 G 149
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 87.6 bits (217), Expect = 2e-22
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 14 TTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYRLGILG 61
T LP+++WI+GGGF G D Y + + NVI+ + YR+G G
Sbjct: 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFG 186
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 85.5 bits (212), Expect = 1e-21
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 10 KVAQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGILGHVILST 67
+ + LPVMVWIHGGG G + G ++NV++VT+ YRLGI G ST
Sbjct: 108 DLTKKNRLPVMVWIHGGGLMVGAAS-TYDGLALAAHENVVVVTIQYRLGIWGF--FST 162
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 83.1 bits (206), Expect = 7e-21
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYRLGILGHVILST 67
LPVMVWIHGG F G G+ Y L + VI+VT+NYRLG G + LS+
Sbjct: 97 LPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSS 148
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 80.8 bits (200), Expect = 4e-20
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNK-NVILVTVNYRLGILG 61
PV+ WIHGG F +G G++ Y +V++VT+NYR+ + G
Sbjct: 99 RPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFG 144
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 78.7 bits (194), Expect = 2e-19
Identities = 28/56 (50%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 13 QTTLLPVMVWIHGGGFAYGHGNADAYGPEFL-MNKNVILVTVNYRLGILGHVILST 67
PVMV+IHGG + G GN Y L NVI++TVNYRLG+LG LST
Sbjct: 127 SGGPKPVMVYIHGGSYMEGTGNL--YDGSVLASYGNVIVITVNYRLGVLGF--LST 178
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 72.1 bits (177), Expect = 6e-17
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFL------MNKNVILVTVNYRLGILG 61
LPVMVWI+GG F Y G++ AY M + V+ V++NYR G G
Sbjct: 122 LPVMVWIYGGAFVY--GSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFG 170
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 71.6 bits (176), Expect = 8e-17
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLM---NKNVILVTVNYRLGILG 61
LPV ++I GGG+A + Y ++ + ++ VT NYR+G LG
Sbjct: 102 LPVWLFIQGGGYAE--NSNANYNGTQVIQASDDVIVFVTFNYRVGALG 147
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 70.2 bits (172), Expect = 2e-16
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFL------MNKNVILVTVNYRLGILG 61
LPVM+WI GGGF G+ + P + M K +I V VNYR+ G
Sbjct: 114 LPVMLWIFGGGFEI--GSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWG 162
>3h04_A Uncharacterized protein; protein with unknown function,
structural genomics, MCSG, PS protein structure
initiative; 1.90A {Staphylococcus aureus subsp}
Length = 275
Score = 46.8 bits (111), Expect = 4e-08
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 12 AQTTLLPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRL 57
V+V+IHGGG +G N + ++ ++ L+ ++YRL
Sbjct: 24 KNQPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYRL 69
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 44.0 bits (104), Expect = 4e-07
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP--EFLMNKNVILVTVNYRL 57
LP +V+ HGGG + + L ++V V++R
Sbjct: 109 LPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRN 151
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure
initiative, PS hydrolase; HET: MSE; 1.85A
{Saccharomyces cerevisiae} SCOP: c.69.1.32
Length = 273
Score = 42.7 bits (100), Expect = 1e-06
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 6/52 (11%)
Query: 12 AQTTLLPVMVWIHGGGFAYGHGNADAYGP------EFLMNKNVILVTVNYRL 57
+++IHGG + + + V ++ YRL
Sbjct: 36 ISQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRL 87
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 41.8 bits (98), Expect = 2e-06
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
+V++HGGG Y G E + ++ ++Y L
Sbjct: 27 TNYVVYLHGGGMIY--GTKSDLPEELKELFTSNGYTVLALDYLL 68
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 41.1 bits (96), Expect = 4e-06
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRL 57
P+ V++HGG + + L+ + + ++Y L
Sbjct: 82 APLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNL 122
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 40.1 bits (94), Expect = 9e-06
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNK-----NVILVTVNYRL 57
LP++V+ HGGGF +A + + V++ +V+YRL
Sbjct: 83 LPLVVYFHGGGFI--LFSAASTIFHDFCCEMAVHAGVVIASVDYRL 126
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 39.9 bits (94), Expect = 9e-06
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
PV+V+ H GGFA GN D E +V+V+YRL
Sbjct: 85 APVVVYCHAGGFAL--GNLDTDHRQCLELARRARCAVVSVDYRL 126
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 40.1 bits (94), Expect = 1e-05
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNK-----NVILVTVNYRL 57
+PV+++ HGG FA H +A++ + L + ++V+VNYR
Sbjct: 113 VPVILFFHGGSFA--HSSANSAIYDTLCRRLVGLCKCVVVSVNYRR 156
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 40.0 bits (94), Expect = 1e-05
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
+PV++WIHGGGFA G A++ P E + V YRL
Sbjct: 79 VPVLLWIHGGGFAI--GTAESSDPFCVEVARELGFAVANVEYRL 120
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 38.9 bits (91), Expect = 3e-05
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNK-----NVILVTVNYRL 57
PV+++ HGG F H +A + + L + ++V+VNYR
Sbjct: 112 FPVIIFFHGGSFV--HSSASSTIYDSLCRRFVKLSKGVVVSVNYRR 155
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 36.8 bits (86), Expect = 1e-04
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
V+V+ HGGGF G+ ++Y P + + ++V+YRL
Sbjct: 90 YGVLVYYHGGGFVL--GDIESYDPLCRAITNSCQCVTISVDYRL 131
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 36.5 bits (85), Expect = 2e-04
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 12 AQTTLLPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
+ LP +++ HGGGF + G+ + + + ++V+V+YRL
Sbjct: 68 KKAAGLPAVLYYHGGGFVF--GSIETHDHICRRLSRLSDSVVVSVDYRL 114
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 36.1 bits (84), Expect = 3e-04
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
P +V+ HGG + G+ + + P + ++ +V+YRL
Sbjct: 74 YPALVYYHGGSWVV--GDLETHDPVCRVLAKDGRAVVFSVDYRL 115
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 35.7 bits (83), Expect = 3e-04
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
PV+V+ HGGGF + +++ N +V+V+YRL
Sbjct: 79 SPVLVYYHGGGFVI--CSIESHDALCRRIARLSNSTVVSVDYRL 120
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 35.7 bits (83), Expect = 4e-04
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP---EFLMNKNVILVTVNYRL 57
LP +V+ HGGGF G+ + + ++V+V+YRL
Sbjct: 76 LPAVVYYHGGGFVL--GSVETHDHVCRRLANLSGAVVVSVDYRL 117
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 35.2 bits (81), Expect = 6e-04
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLGILGHVILSTALR 70
P+M+ GGGF Y G +A +M + V +NY+L + + AL+
Sbjct: 35 YPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQSVYPWALQ 88
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 34.9 bits (81), Expect = 6e-04
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPE--FLMNK-NVILVTVNYRL 57
+ ++HGGGF GN D + L ++ ++Y L
Sbjct: 87 QATLYYLHGGGFIL--GNLDTHDRIMRLLARYTGCTVIGIDYSL 128
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 34.5 bits (79), Expect = 8e-04
Identities = 7/42 (16%), Positives = 20/42 (47%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYRLG 58
+ + V++HGG + ++ ++ ++K + +Y L
Sbjct: 63 VGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELC 104
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 32.1 bits (73), Expect = 0.006
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 7/43 (16%)
Query: 17 LPVMVWIHGGGFA-YGHGNADAYGPE--FLMNKNVILVTVNYR 56
P +V +HGG FA + L +V NYR
Sbjct: 360 GPTVVLVHGGPFAEDSDS----WDTFAASLAAAGFHVVMPNYR 398
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 30.9 bits (70), Expect = 0.016
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 18 PVMVWIHGGGFAYGHGNADAYGP-EFLMNKNVILVTVNYRLG 58
P ++ GGG+ + ++ + + ++ +NY +
Sbjct: 44 PAIIICPGGGYQHISQR-ESDPLALAFLAQGYQVLLLNYTVM 84
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 30.8 bits (69), Expect = 0.019
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 9/51 (17%)
Query: 17 LPVMVWIHGGG---------FAYGHGNADAYGPEFLMNKNVILVTVNYRLG 58
P++V++HG G A G P + + ++
Sbjct: 174 YPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPN 224
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 29.8 bits (67), Expect = 0.049
Identities = 9/63 (14%), Positives = 15/63 (23%), Gaps = 11/63 (17%)
Query: 18 PVMVWIHGGGFAYGHGNADAYGP--EFLMNKNVILVTVNYRLGILGHVI-------LSTA 68
P ++ + GG Y H + Y L + L A
Sbjct: 51 PAIIIVPGGS--YTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQPLGLAPVLDLGRA 108
Query: 69 LRY 71
+
Sbjct: 109 VNL 111
>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
bacterium} PDB: 3dnm_A
Length = 322
Score = 29.6 bits (67), Expect = 0.051
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 17/49 (34%)
Query: 18 PVMVWIHGGGFAYG----HGN-----ADAYGPEFLMNKNVILVTVNYRL 57
+++ HGGG+ G H A L +++YRL
Sbjct: 81 AHILYFHGGGYISGSPSTHLVLTTQLAKQSS--------ATLWSLDYRL 121
>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
Length = 322
Score = 29.6 bits (67), Expect = 0.059
Identities = 8/45 (17%), Positives = 22/45 (48%), Gaps = 9/45 (20%)
Query: 18 PVMVWIHGGGFAYGHGNADAYGPEFLMNK-----NVILVTVNYRL 57
++++HGGG+ G+ + + ++ + + ++YRL
Sbjct: 81 KAILYLHGGGYV--MGSINTHRS--MVGEISRASQAAALLLDYRL 121
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 28.6 bits (64), Expect = 0.097
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGP--EFLMNKNVILVTVNYR 56
+P ++++HG G G+ + I +T + R
Sbjct: 28 MPGVLFVHGWG-----GSQHHSLVRAREAVGLGCICMTFDLR 64
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 27.9 bits (62), Expect = 0.19
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56
P ++ HG Y + D + +V ++ R
Sbjct: 108 HPALIRFHG----YSSNSGDWNDKLNYVAAGFTVVAMDVR 143
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 27.9 bits (62), Expect = 0.20
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 13/48 (27%)
Query: 15 TLLPVMVWIHGGGFAYGHGNADAYGPEF------LMNKNVILVTVNYR 56
L P +V HGG + ++ + + VNY
Sbjct: 422 ELPPYVVMAHGGPTS-------RVPAVLDLDVAYFTSRGIGVADVNYG 462
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide,
oligosaccharide-binding fold, OB-fold, beta-barrel, RNA
binding protein; 2.50A {Aquifex aeolicus} SCOP:
b.40.4.4
Length = 111
Score = 26.8 bits (60), Expect = 0.39
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 33 GNADAYGPEFLMNKNVILVT 52
G A Y PE L+ K +++V
Sbjct: 51 GIAKYYTPEELVGKKIVIVA 70
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta
barrel, dimerization domain, ligase; 2.01A {Pyrococcus
abyssi} SCOP: b.40.4.4
Length = 107
Score = 26.8 bits (60), Expect = 0.42
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 33 GNADAYGPEFLMNKNVILVT 52
G Y PE L+N+ V++V
Sbjct: 47 GLKKYYKPEELLNRYVVVVA 66
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase,
protelomerase, DNA distortion; 3.20A {Klebsiella phage
PHIKO2}
Length = 558
Score = 26.9 bits (58), Expect = 0.50
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 30 YGHGNADAYGPEFLMNKNVILVTVNYRLGILGHVILSTALRY 71
Y + + KNV + + ILGH +T L Y
Sbjct: 406 YARIAYEMFFRVDPRWKNVDEDV--FFMEILGHDDENTQLHY 445
>2cwp_A Metrs related protein; structural GEN riken structural
genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus
horikoshii}
Length = 112
Score = 26.4 bits (59), Expect = 0.55
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 33 GNADAYGPEFLMNKNVILVT 52
G AD PE L K I V
Sbjct: 51 GIADQIPPEELEGKKFIFVV 70
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 26.8 bits (59), Expect = 0.60
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 17 LPVMVWIHGGGFAYGHGNADAYGPEFLMNKNVILVTVNYR 56
LP +V G Y G + F + I ++ R
Sbjct: 95 LPCVVQYIG----YNGGRGFPHDWLFWPSMGYICFVMDTR 130
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 26.2 bits (58), Expect = 0.72
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 9/45 (20%)
Query: 18 PVMVWIHGGGFAYGHGNADAYGPEFLMNK-----NVILVTVNYRL 57
+++IHGG A + + L++K +V Y
Sbjct: 97 KKILYIHGGFNA--LQPSPFHWR--LLDKITLSTLYEVVLPIYPK 137
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide
binding fold, OB fold, beta- barrel; 1.87A {Escherichia
coli} SCOP: b.40.4.4 PDB: 3ers_X
Length = 111
Score = 26.1 bits (58), Expect = 0.75
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 33 GNADAYGPEFLMNKNVILVT 52
Y E LM K V+++
Sbjct: 48 SLVPYYSEEELMGKTVVVLC 67
>1y4j_A Sulfatase modifying factor 2; formylglycine, sulfatases, multiple
sulfatase deficiency, HO DUF323, sugar binding protein;
HET: NAG FUC; 1.86A {Homo sapiens} SCOP: d.169.1.7
Length = 284
Score = 26.4 bits (58), Expect = 0.76
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 18 PVMVWIHGGGFAYGHGNADAYGPE 41
MV + GG F G + D+ E
Sbjct: 2 TSMVQLQGGRFLMGTNSPDSRDGE 25
>1l7a_A Cephalosporin C deacetylase; structural genomics,
alpha-beta-alpha sandwich, PSI, protein structure
initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25
PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A
3fyt_A* 3fyu_B*
Length = 318
Score = 25.9 bits (57), Expect = 0.98
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 17 LPVMVWIHGGGFAY 30
P +V HG +Y
Sbjct: 82 HPAIVKYHGYNASY 95
>2y3c_A Treponema denticola variable protein 1; unknown function,
periodontal disease; HET: CME; 1.40A {Treponema
denticola}
Length = 294
Score = 25.1 bits (55), Expect = 2.1
Identities = 5/32 (15%), Positives = 8/32 (25%)
Query: 5 TKCQVKVAQTTLLPVMVWIHGGGFAYGHGNAD 36
T ++ M I GH +
Sbjct: 17 TPVDKTYTVGSVEFTMKGIAAVNAQLGHNDYS 48
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for
infectious diseases, center for structural GENO
infectious diseases; 1.50A {Bacillus anthracis}
Length = 112
Score = 24.4 bits (54), Expect = 2.6
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 35 ADAYGPEFLMNKNVILVTVN 54
Y PE L+ + ++ V VN
Sbjct: 53 TKRYNPEDLIGQQIVAV-VN 71
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid;
beta barrel, OB fold, homodimer, protein secretio; HET:
CIT; 1.65A {Agrobacterium tumefaciens str}
Length = 131
Score = 24.5 bits (54), Expect = 2.7
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 35 ADAYGPEFLMNKNVILVTVN 54
Y PE L+ + V+ V VN
Sbjct: 72 TVHYTPESLVGRQVLGV-VN 90
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer,
hydrophobic cavity, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Thermus
thermophilus} SCOP: b.40.4.4
Length = 109
Score = 24.4 bits (54), Expect = 3.2
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 35 ADAYGPEFLMNKNVILVTVN 54
+ Y PE L+ + V+ VN
Sbjct: 50 TELYRPEDLVGRLVVCA-VN 68
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 24.3 bits (53), Expect = 3.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 33 GNADAYGPEFLMNKNVILVT 52
G Y PE L+N+ V++V
Sbjct: 662 GLKKYYKPEELLNRYVVVVA 681
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide
binding fold, H chaperone; 1.90A {Bacillus subtilis}
PDB: 2nzo_A
Length = 113
Score = 24.0 bits (53), Expect = 4.3
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 35 ADAYGPEFLMNKNVILVTVN 54
Y PE L+NK VI V VN
Sbjct: 54 TKRYKPEGLINKQVIAV-VN 72
>3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
1.83A {Bordetella parapertussis 12822}
Length = 304
Score = 24.3 bits (51), Expect = 4.7
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 18 PVMVWIHGGGFAYGHGNADAY---GPEFLMNKNVILVTVNYR 56
PV+V HG N Y +++V +
Sbjct: 55 PVVVVQHGVL-----RNGADYRDFWIPAADRHKLLIVAPTFS 91
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold,
homodimer, protein secretio; 1.55A {Agrobacterium
tumefaciens str}
Length = 116
Score = 23.7 bits (52), Expect = 5.3
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 35 ADAYGPEFLMNKNVILVTVN 54
Y PE L+ + V+ V VN
Sbjct: 57 TVHYTPESLVGRQVLGV-VN 75
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 23.5 bits (51), Expect = 7.2
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 20 MVWIHGGG-----FAYGHGNADAYGPEFLMNKNVILVTVNYRLGILGHVILST-ALR 70
V + G G + AD E L VILV V +LG + H +L+ ++
Sbjct: 111 WVLVEGAGGWFTPLSDTFTFADWVTQEQL---PVILV-VGVKLGCINHAMLTAQVIQ 163
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural
genomics of infec diseases, csgid, ligase; 1.52A
{Francisella tularensis subsp}
Length = 228
Score = 23.1 bits (50), Expect = 9.3
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 48 VILVTVNYRLGILGHVILST-ALR 70
V+LV ++G + H +L+ L
Sbjct: 143 VLLV-SAIKVGCINHTLLTINELN 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.143 0.459
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,109,077
Number of extensions: 52336
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 62
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)