BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy948
(1576 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 234 bits (596), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 178/615 (28%), Positives = 275/615 (44%), Gaps = 128/615 (20%)
Query: 813 WRCDHDEDCTDGSDETE--CGGFQCKNGTFQCSS--GHCIAAYFRCDGDRDCRDLSELNG 868
W CD +C DGSDE++ C CK+G F C CI ++RCDG DC + S+ G
Sbjct: 23 WVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG 82
Query: 869 ---------TFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAST 919
F+C G CI+ F CD DRDC D SDE +CP C FQC S+
Sbjct: 83 CPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT-----CGPASFQCNSS 137
Query: 920 HLCVEQSELCDGTDDCGDNSDETSSLCSNMNCT-------SLHKYQCDNGRCIASYQLCD 972
C+ Q CD DC D SDE C + S ++ C +G CI S CD
Sbjct: 138 -TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCD 196
Query: 973 GVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELG 1032
G +C D SDE N + T ++ CS+ CI + C+ DC D+SDE+G
Sbjct: 197 GGPDCKDKSDEENCAVATCRP--------DEFQCSDGNCIHGSRQCDREYDCKDMSDEVG 248
Query: 1033 CHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLH-----------------C 1075
C ++F+C++G+CI VCN DC D SDEP+ C
Sbjct: 249 CVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVC 308
Query: 1076 N------------------------VDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDD 1111
N +DEC +T C CV+ GY C+C G+ D
Sbjct: 309 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDP 366
Query: 1112 -------IGTVSPS--SNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEV 1162
+G+++ +N+ R + ++S + + +V + V NR ++
Sbjct: 367 HTKACKAVGSIAYLFFTNRHEVRKMTLDRSE-YTSLIPNLRNVVALDTEVASNRIYWSDL 425
Query: 1163 TKIPLCALDV--------------RSIK-----------------------LDVAELDGT 1185
++ +C+ + R I+ + VA+ G
Sbjct: 426 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485
Query: 1186 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 1244
RKTL + PR I + P G++Y++ W A I K G++G + ++T ++I WPN
Sbjct: 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPN 543
Query: 1245 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWN 1303
+TLD + RLYW D+ L I+S+D++G ++ ++ +K + H F+L +FED ++WTD
Sbjct: 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 603
Query: 1304 TKSINRADKFNAREI 1318
++I A++ ++
Sbjct: 604 NEAIFSANRLTGSDV 618
Score = 161 bits (407), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 195/722 (27%), Positives = 282/722 (39%), Gaps = 107/722 (14%)
Query: 585 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAS-TH 643
G +C+ FQC G CI+ + CDG +C+D SDE C F C +
Sbjct: 3 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ---ETCLSVTCKSGDFSCGGRVN 59
Query: 644 LCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLH------KCIPKWLFCDGKDDCRDGS 697
C+ Q CDG DC + SDE C C+ KCI + CD DC DGS
Sbjct: 60 RCIPQFWRCDGQVDCDNGSDEQG--CPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 117
Query: 698 DELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAY------RQC 751
DE C + FQC ++ CIP+ W CD + DC D SDE C G Y C
Sbjct: 118 DEASCPVLTCGPAS-FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 176
Query: 752 SESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAAS 811
S EF C +G+CI + WRCD DC D SDE C V R + + N
Sbjct: 177 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA------VATCRPDEFQCSDGNCIHG 230
Query: 812 NWRCDHDEDCTDGSDETECGGFQCKNG--TFQCSSGHCIAAYFRCDGDRDCRDLSELNGT 869
+ +CD + DC D SDE C G F+C SG CI C+ RDCRD S+
Sbjct: 231 SRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSD-EPI 289
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELC 929
+C + C+ C C DL C CP+ FQ + C
Sbjct: 290 KECGTNECLDNNGGC--SHVCNDLKIGYEC--------LCPD-GFQLVA-------QRRC 331
Query: 930 DGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLC 989
+ D+C D D S LC N+ +K QC+ G +QL C L
Sbjct: 332 EDIDECQD-PDTCSQLCVNLE--GGYKCQCEEG-----FQLDPHTKACKAVGSIAYLFFT 383
Query: 990 TVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNN 1049
H K S+YT +L ++ + L E+ ++ + S + C+
Sbjct: 384 NRHEVRKMTLDRSEYT----------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 433
Query: 1050 GKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYND 1109
+ H V + ++ D P D L + N + D
Sbjct: 434 -QLDRAHGVSSYDTVISRDIQAP---------------------DGLAVDWIHSNIYWTD 471
Query: 1110 DDIGTVSPSSNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEVTKIPLCA 1169
+GTVS + K + R T ++ + +V+ V+ + ++ K L
Sbjct: 472 SVLGTVSVADTKGVKRKT-LFREQGSKPRAIVVDPVHGFM--YWTDWGTPAKIKKGGLNG 528
Query: 1170 LDVRSIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 1229
+D+ S+ + IQ P GITL G +Y+ L + I I ++G N
Sbjct: 529 VDIYSL--------------VTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGN 573
Query: 1230 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-LDGKHKHIVISGQKVPHVF 1288
IL E +A P +L F ++++W D + I S + L G +++ P
Sbjct: 574 RKTILEDEKRLAHP--FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 631
Query: 1289 AL 1290
L
Sbjct: 632 VL 633
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 171/378 (45%), Gaps = 76/378 (20%)
Query: 548 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEME--CGGFQCKNGTFQCSS--GHCIAA 603
+C +EFQC++GKCI +W CD +C DGSDE + C CK+G F C CI
Sbjct: 5 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 64
Query: 604 YFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSD 663
++RCDG DC + SDE CPP+ C + +F+C C+ + +CD DC D SD
Sbjct: 65 FWRCDGQVDCDNGSDEQGCPPKT-----CSQDEFRCHDGK-CISRQFVCDSDRDCLDGSD 118
Query: 664 ETSSLCSNMNCTSL------HKCIPKWLFCDGKDDCRDGSDELPQNCPKCH--------- 708
E S C + C CIP+ CD DC DGSDE PQ C +
Sbjct: 119 EAS--CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 176
Query: 709 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQW 768
+F C + CI W CD DC D+SDE CA A C EFQC +G CI
Sbjct: 177 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN--CAVA--TCRPDEFQCSDGNCIHGSR 232
Query: 769 RCDHDEDCTDGSDEMEC---------GGFQC---KCVTMTRIVQMEVMKWNAAASNWRCD 816
+CD + DC D SDE+ C F+C +C+T+ ++ C+
Sbjct: 233 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKV----------------CN 276
Query: 817 HDEDCTDGSDE--TECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCSS 874
DC D SDE ECG +C + CS C DL ++ C
Sbjct: 277 MARDCRDWSDEPIKECGTNECLDNNGGCS--------------HVCNDL-KIGYECLCPD 321
Query: 875 GHCIAAYFRCDGDRDCRD 892
G + A RC+ +C+D
Sbjct: 322 GFQLVAQRRCEDIDECQD 339
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 148/307 (48%), Gaps = 39/307 (12%)
Query: 507 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQC--KNGKCIPA 564
E +FQC++ +CI +W+CD +C D SDE+++ C C +F C + +CIP
Sbjct: 7 ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV--TCKSGDFSCGGRVNRCIPQ 64
Query: 565 QWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPP 624
WRCD DC +GSDE C C F+C G CI+ F CD DRDC D SDE +CP
Sbjct: 65 FWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV 124
Query: 625 RYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM--------NCTS 676
C FQC S+ C+ Q CD DC D SDE C + C++
Sbjct: 125 LT-----CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSA 178
Query: 677 LH------KCIPKWLFCDGKDDCRDGSDELPQNCPKCH-ETTDFQCKNNRCIPKRWMCDF 729
+CI CDG DC+D SDE +NC +FQC + CI CD
Sbjct: 179 FEFHCLSGECIHSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIHGSRQCDR 236
Query: 730 ENDCGDQSDEA----EDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE--M 783
E DC D SDE LC G ++F+C +G+CI C+ DC D SDE
Sbjct: 237 EYDCKDMSDEVGCVNVTLCEGP------NKFKCHSGECITLDKVCNMARDCRDWSDEPIK 290
Query: 784 ECGGFQC 790
ECG +C
Sbjct: 291 ECGTNEC 297
Score = 150 bits (378), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 126/364 (34%), Positives = 162/364 (44%), Gaps = 49/364 (13%)
Query: 340 QCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKH---CDLPCPDLEFKCASN-GRCILN 395
+C FQC +G C +CDG +C+DGSDE + C +F C RCI
Sbjct: 5 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 64
Query: 396 SWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCXXXXXXXXXXXEPA 455
W+CDG+ DC +GSDE C + C +D EF C +G CI + +VC E +
Sbjct: 65 FWRCDGQVDCDNGSDEQG--CPPKTCSQD-EFRCHDGKCISRQFVCDSDRDCLDGSDEAS 121
Query: 456 YMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCH--------- 506
C C +C T CIP+ CD DC DGSDE PQ C +
Sbjct: 122 --CPVLTCGPASFQCNSST---CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 176
Query: 507 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQW 566
+F C + CI W CD DC D+SDE CA A C EFQC +G CI
Sbjct: 177 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN--CAVA--TCRPDEFQCSDGNCIHGSR 232
Query: 567 RCDHDEDCTDGSDEMECGGFQCKNG--TFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPP 624
+CD + DC D SDE+ C G F+C SG CI C+ RDCRD SDE P
Sbjct: 233 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE---PI 289
Query: 625 RYPGGRFCPEYKFQCASTHLC----------------VEQSELCDGTDDCGDNSDETSSL 668
+ G C + C +H+C + C+ D+C D D S L
Sbjct: 290 KECGTNECLDNNGGC--SHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCSQL 346
Query: 669 CSNM 672
C N+
Sbjct: 347 CVNL 350
Score = 140 bits (353), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 142/322 (44%), Gaps = 72/322 (22%)
Query: 292 NKTCVA-NCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDN 350
+TC++ C G CGG +CIP FW+CDG+ DC +GSDE CP + C F+C +
Sbjct: 39 QETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE-QGCPPKTCSQDEFRCHD 97
Query: 351 GNCTPSASICDGVDDCRDGSDEKHCD-LPCPDLEFKCASNGRCILNSWKCDGEPDCKDGS 409
G C +CD DC DGSDE C L C F+C S+ CI W CD +PDC+DGS
Sbjct: 98 GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGS 156
Query: 410 DEDPAMCH--------NRPCDKDTEFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQR 461
DE P C + PC EF C +G CI W
Sbjct: 157 DEWPQRCRGLYVFQGDSSPCSA-FEFHCLSGECIHSSWR--------------------- 194
Query: 462 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCH-ETTDFQCKNNRCIP 520
CDG DC+D SDE +NC +FQC + CI
Sbjct: 195 -----------------------CDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIH 229
Query: 521 KRWMCDFENDCGDQSDEA----EDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTD 576
CD E DC D SDE LC G ++F+C +G+CI C+ DC D
Sbjct: 230 GSRQCDREYDCKDMSDEVGCVNVTLCEGP------NKFKCHSGECITLDKVCNMARDCRD 283
Query: 577 GSDE--MECGGFQCKNGTFQCS 596
SDE ECG +C + CS
Sbjct: 284 WSDEPIKECGTNECLDNNGGCS 305
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 120/277 (43%), Gaps = 18/277 (6%)
Query: 1301 DWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECA 1360
DW+ + I + G H C ++ GY C C GF + ++C D+DEC
Sbjct: 283 DWSDEPIKECGTNECLDNNGGCSHVCNDLK--IGYECLCPDGFQLVAQ--RRCEDIDECQ 338
Query: 1361 TGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKR 1420
CSQ+C NL G Y C C GF L D + CKA + + ++N E+R +
Sbjct: 339 DP-DTCSQLCVNLEGGYKCQCEEGFQL-DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 396
Query: 1421 RFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGI-KS 1479
+ +I + R + ALD + IYW D R I Q + D I +
Sbjct: 397 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMI-----CSTQLDRAHGVSSYDTVISRD 451
Query: 1480 IGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDP 1539
I +AVDWI NIYWT S G V VA G R++L E P +I +DP
Sbjct: 452 IQAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDP 505
Query: 1540 TLGKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
G M+W + G +I+ ++G + N Q P
Sbjct: 506 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 140/327 (42%), Gaps = 57/327 (17%)
Query: 100 WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEF 157
W+CD +C DGSDE +E TC S +F+C + +CI + + CDG+ DC + SDE
Sbjct: 23 WVCDGSAECQDGSDESQETCLSV-TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ 81
Query: 158 NCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVL 217
C +TCS +EF C + KCI + + CD + DC D SDE +C VL
Sbjct: 82 GC------------PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP----VL 125
Query: 218 RNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSY 277
C + C+ + + D PD D
Sbjct: 126 T-----------------------CGPASFQCNSSTCIPQLWACDNDPDC-EDGSDEWPQ 161
Query: 278 TCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCP 337
C Y+ D+ C A + HC +CI W+CDG DC D SDE +C
Sbjct: 162 RC---RGLYVFQGDSSPCSAF----EFHC--LSGECIHSSWRCDGGPDCKDKSDEE-NCA 211
Query: 338 ARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC---DLPCPDLEFKCASNGRCIL 394
CR FQC +GNC + CD DC+D SDE C L +FKC S G CI
Sbjct: 212 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECIT 270
Query: 395 NSWKCDGEPDCKDGSDEDPAMCHNRPC 421
C+ DC+D SDE C C
Sbjct: 271 LDKVCNMARDCRDWSDEPIKECGTNEC 297
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 98/244 (40%), Gaps = 60/244 (24%)
Query: 100 WLCDHDNDCGDGSDE-GKECHDKY------RTCSSEEFACQNFKCIRKTYHCDGEDDCGD 152
W CD+D DC DGSDE + C Y CS+ EF C + +CI ++ CDG DC D
Sbjct: 144 WACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKD 203
Query: 153 RSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC-- 210
+SDE NC TC +EF C + CI + CD E DC D SDE C
Sbjct: 204 KSDEENC------------AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 251
Query: 211 -------------SRDYRVLRNTTHRPYDIHVY--HPLKQLAYPNPCDGDNGGCSHLCLL 255
S + L + D + P+K+ N C +NGGCSH+C
Sbjct: 252 VTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGT-NECLDNNGGCSHVCND 310
Query: 256 SPVPGVDRAPDMYA-----------DARSPVS-----------YTCACPNQFYLDPRDNK 293
+ PD + + + P + Y C C F LDP K
Sbjct: 311 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH-TK 369
Query: 294 TCVA 297
C A
Sbjct: 370 ACKA 373
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 9 RFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE 68
R D +Y + G+ K I K G++G + ++T ++I WPN +TLD +
Sbjct: 499 RAIVVDPVHGFMYWTDWGTPAK----IKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSG 552
Query: 69 RLYWADAHLDYIASVDLDGKHKHIVISGQK 98
RLYW D+ L I+S+D++G ++ ++ +K
Sbjct: 553 RLYWVDSKLHSISSIDVNGGNRKTILEDEK 582
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 213 DYRVLRNTTHRPYDIHVYHPLKQLAYPNPCDG---DNGGCSHLCLLSPVPGVDRAPDMYA 269
D +L P D+ ++H L Q N C+ NGGC +LCL P P +
Sbjct: 617 DVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCL--PAPQI-------- 666
Query: 270 DARSPVSYTCACPNQFYLDPRDNKTCVA 297
+ SP +TCACP+ L RD ++C+
Sbjct: 667 NPHSP-KFTCACPDGMLL-ARDMRSCLT 692
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl
Receptor
Length = 791
Score = 233 bits (594), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 178/615 (28%), Positives = 275/615 (44%), Gaps = 128/615 (20%)
Query: 813 WRCDHDEDCTDGSDETE--CGGFQCKNGTFQCSS--GHCIAAYFRCDGDRDCRDLSELNG 868
W CD +C DGSDE++ C CK+G F C CI ++RCDG DC + S+ G
Sbjct: 41 WVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG 100
Query: 869 ---------TFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAST 919
F+C G CI+ F CD DRDC D SDE +CP C FQC S+
Sbjct: 101 CPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT-----CGPASFQCNSS 155
Query: 920 HLCVEQSELCDGTDDCGDNSDETSSLCSNMNCT-------SLHKYQCDNGRCIASYQLCD 972
C+ Q CD DC D SDE C + S ++ C +G CI S CD
Sbjct: 156 -TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCD 214
Query: 973 GVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELG 1032
G +C D SDE N + T ++ CS+ CI + C+ DC D+SDE+G
Sbjct: 215 GGPDCKDKSDEENCAVATCRP--------DEFQCSDGNCIHGSRQCDREYDCKDMSDEVG 266
Query: 1033 CHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLH-----------------C 1075
C ++F+C++G+CI VCN DC D SDEP+ C
Sbjct: 267 CVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVC 326
Query: 1076 N------------------------VDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDD 1111
N +DEC +T C CV+ GY C+C G+ D
Sbjct: 327 NDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDP 384
Query: 1112 -------IGTVSPS--SNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEV 1162
+G+++ +N+ R + ++S + + +V + V NR ++
Sbjct: 385 HTKACKAVGSIAYLFFTNRHEVRKMTLDRSE-YTSLIPNLRNVVALDTEVASNRIYWSDL 443
Query: 1163 TKIPLCALDV--------------RSIK-----------------------LDVAELDGT 1185
++ +C+ + R I+ + VA+ G
Sbjct: 444 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 503
Query: 1186 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 1244
RKTL + PR I + P G++Y++ W A I K G++G + ++T ++I WPN
Sbjct: 504 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPN 561
Query: 1245 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWN 1303
+TLD + RLYW D+ L I+S+D++G ++ ++ +K + H F+L +FED ++WTD
Sbjct: 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 621
Query: 1304 TKSINRADKFNAREI 1318
++I A++ ++
Sbjct: 622 NEAIFSANRLTGSDV 636
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 214/813 (26%), Positives = 311/813 (38%), Gaps = 123/813 (15%)
Query: 585 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAS-TH 643
G +C+ FQC G CI+ + CDG +C+D SDE C F C +
Sbjct: 21 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ---ETCLSVTCKSGDFSCGGRVN 77
Query: 644 LCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLH------KCIPKWLFCDGKDDCRDGS 697
C+ Q CDG DC + SDE C C+ KCI + CD DC DGS
Sbjct: 78 RCIPQFWRCDGQVDCDNGSDEQG--CPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 135
Query: 698 DELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAY------RQC 751
DE C + FQC ++ CIP+ W CD + DC D SDE C G Y C
Sbjct: 136 DEASCPVLTCGPAS-FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 194
Query: 752 SESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAAS 811
S EF C +G+CI + WRCD DC D SDE C C R + + N
Sbjct: 195 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATC------RPDEFQCSDGNCIHG 248
Query: 812 NWRCDHDEDCTDGSDETECGGFQCKNG--TFQCSSGHCIAAYFRCDGDRDCRDLSELNGT 869
+ +CD + DC D SDE C G F+C SG CI C+ RDCRD S+
Sbjct: 249 SRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSD-EPI 307
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELC 929
+C + C+ C C DL C CP+ FQ + C
Sbjct: 308 KECGTNECLDNNGGC--SHVCNDLKIGYEC--------LCPD-GFQLVA-------QRRC 349
Query: 930 DGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLC 989
+ D+C D D S LC N+ +K QC+ G +QL C L
Sbjct: 350 EDIDECQD-PDTCSQLCVNLE--GGYKCQCEEG-----FQLDPHTKACKAVGSIAYLFFT 401
Query: 990 TVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNN 1049
H K S+YT +L ++ + L E+ ++ + S + C+
Sbjct: 402 NRHEVRKMTLDRSEYT----------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 451
Query: 1050 GKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYND 1109
+ H V + ++ D P D L + N + D
Sbjct: 452 -QLDRAHGVSSYDTVISRDIQAP---------------------DGLAVDWIHSNIYWTD 489
Query: 1110 DDIGTVSPSSNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEVTKIPLCA 1169
+GTVS + K + R T L + R V++ M T A
Sbjct: 490 SVLGTVSVADTKGVKRKT------------LFRENGSKPRAIVVDPVHGFMYWTDWGTPA 537
Query: 1170 LDVRSIKLDVAELDGTNRKTLKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 1228
K+ L+G + +L T IQ P GITL G +Y+ L + I I ++G
Sbjct: 538 ------KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGG 590
Query: 1229 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-LDGKHKHIVISGQKVPHV 1287
N IL E +A P +L F ++++W D + I S + L G +++ P
Sbjct: 591 NRKTILEDEKRLAHP--FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPE- 647
Query: 1288 FALTLFEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITG----GSGYLCTCYQGF 1343
+ LF + + +N ++ G + C+ + C C G
Sbjct: 648 -DMVLFHNLT-----QPRGVNWCERTTLS--NGGCQYLCLPAPQINPHSPKFTCACPDGM 699
Query: 1344 IIDKNNAKKCLDVDECATGIHHCSQVCTNLNGT 1376
++ + + + CL E A S V ++ T
Sbjct: 700 LLAR-DMRSCLTEAEAAVATQETSTVRLKVSST 731
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/378 (33%), Positives = 171/378 (45%), Gaps = 76/378 (20%)
Query: 548 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEME--CGGFQCKNGTFQCSS--GHCIAA 603
+C +EFQC++GKCI +W CD +C DGSDE + C CK+G F C CI
Sbjct: 23 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 82
Query: 604 YFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSD 663
++RCDG DC + SDE CPP+ C + +F+C C+ + +CD DC D SD
Sbjct: 83 FWRCDGQVDCDNGSDEQGCPPKT-----CSQDEFRCHDGK-CISRQFVCDSDRDCLDGSD 136
Query: 664 ETSSLCSNMNCTSL------HKCIPKWLFCDGKDDCRDGSDELPQNCPKCH--------- 708
E S C + C CIP+ CD DC DGSDE PQ C +
Sbjct: 137 EAS--CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 194
Query: 709 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQW 768
+F C + CI W CD DC D+SDE CA A C EFQC +G CI
Sbjct: 195 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN--CAVA--TCRPDEFQCSDGNCIHGSR 250
Query: 769 RCDHDEDCTDGSDEMEC---------GGFQC---KCVTMTRIVQMEVMKWNAAASNWRCD 816
+CD + DC D SDE+ C F+C +C+T+ ++ C+
Sbjct: 251 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKV----------------CN 294
Query: 817 HDEDCTDGSDE--TECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCSS 874
DC D SDE ECG +C + CS C DL ++ C
Sbjct: 295 MARDCRDWSDEPIKECGTNECLDNNGGCS--------------HVCNDL-KIGYECLCPD 339
Query: 875 GHCIAAYFRCDGDRDCRD 892
G + A RC+ +C+D
Sbjct: 340 GFQLVAQRRCEDIDECQD 357
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 148/307 (48%), Gaps = 39/307 (12%)
Query: 507 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQC--KNGKCIPA 564
E +FQC++ +CI +W+CD +C D SDE+++ C C +F C + +CIP
Sbjct: 25 ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV--TCKSGDFSCGGRVNRCIPQ 82
Query: 565 QWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPP 624
WRCD DC +GSDE C C F+C G CI+ F CD DRDC D SDE +CP
Sbjct: 83 FWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV 142
Query: 625 RYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM--------NCTS 676
C FQC S+ C+ Q CD DC D SDE C + C++
Sbjct: 143 LT-----CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSA 196
Query: 677 LH------KCIPKWLFCDGKDDCRDGSDELPQNCPKCH-ETTDFQCKNNRCIPKRWMCDF 729
+CI CDG DC+D SDE +NC +FQC + CI CD
Sbjct: 197 FEFHCLSGECIHSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIHGSRQCDR 254
Query: 730 ENDCGDQSDEA----EDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE--M 783
E DC D SDE LC G ++F+C +G+CI C+ DC D SDE
Sbjct: 255 EYDCKDMSDEVGCVNVTLCEGP------NKFKCHSGECITLDKVCNMARDCRDWSDEPIK 308
Query: 784 ECGGFQC 790
ECG +C
Sbjct: 309 ECGTNEC 315
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 139/295 (47%), Gaps = 27/295 (9%)
Query: 340 QCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKH---CDLPCPDLEFKCASN-GRCILN 395
+C FQC +G C +CDG +C+DGSDE + C +F C RCI
Sbjct: 23 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 82
Query: 396 SWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCXXXXXXXXXXXEPA 455
W+CDG+ DC +GSDE C + C +D EF C +G CI + +VC E +
Sbjct: 83 FWRCDGQVDCDNGSDEQG--CPPKTCSQD-EFRCHDGKCISRQFVCDSDRDCLDGSDEAS 139
Query: 456 YMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCH--------- 506
C C +C T CIP+ CD DC DGSDE PQ C +
Sbjct: 140 --CPVLTCGPASFQCNSST---CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 194
Query: 507 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQW 566
+F C + CI W CD DC D+SDE CA A C EFQC +G CI
Sbjct: 195 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN--CAVA--TCRPDEFQCSDGNCIHGSR 250
Query: 567 RCDHDEDCTDGSDEMECGGFQCKNG--TFQCSSGHCIAAYFRCDGDRDCRDLSDE 619
+CD + DC D SDE+ C G F+C SG CI C+ RDCRD SDE
Sbjct: 251 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 305
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 142/322 (44%), Gaps = 72/322 (22%)
Query: 292 NKTCVA-NCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDN 350
+TC++ C G CGG +CIP FW+CDG+ DC +GSDE CP + C F+C +
Sbjct: 57 QETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE-QGCPPKTCSQDEFRCHD 115
Query: 351 GNCTPSASICDGVDDCRDGSDEKHCD-LPCPDLEFKCASNGRCILNSWKCDGEPDCKDGS 409
G C +CD DC DGSDE C L C F+C S+ CI W CD +PDC+DGS
Sbjct: 116 GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGS 174
Query: 410 DEDPAMCH--------NRPCDKDTEFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQR 461
DE P C + PC EF C +G CI W
Sbjct: 175 DEWPQRCRGLYVFQGDSSPCSA-FEFHCLSGECIHSSW---------------------- 211
Query: 462 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCH-ETTDFQCKNNRCIP 520
CDG DC+D SDE +NC +FQC + CI
Sbjct: 212 ----------------------RCDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIH 247
Query: 521 KRWMCDFENDCGDQSDEA----EDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTD 576
CD E DC D SDE LC G ++F+C +G+CI C+ DC D
Sbjct: 248 GSRQCDREYDCKDMSDEVGCVNVTLCEGP------NKFKCHSGECITLDKVCNMARDCRD 301
Query: 577 GSDE--MECGGFQCKNGTFQCS 596
SDE ECG +C + CS
Sbjct: 302 WSDEPIKECGTNECLDNNGGCS 323
Score = 121 bits (303), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 121/277 (43%), Gaps = 18/277 (6%)
Query: 1301 DWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECA 1360
DW+ + I + G H C ++ GY C C GF + ++C D+DEC
Sbjct: 301 DWSDEPIKECGTNECLDNNGGCSHVCNDLK--IGYECLCPDGFQLVAQ--RRCEDIDECQ 356
Query: 1361 TGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKR 1420
CSQ+C NL G Y C C GF L D + CKA + + ++N E+R +
Sbjct: 357 DP-DTCSQLCVNLEGGYKCQCEEGFQL-DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 414
Query: 1421 RFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGI-KS 1479
+ +I + R + ALD + IYW D R I Q + D I +
Sbjct: 415 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMI-----CSTQLDRAHGVSSYDTVISRD 469
Query: 1480 IGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDP 1539
I +AVDWI NIYWT S G V VA G R++L EN P +I +DP
Sbjct: 470 IQAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 523
Query: 1540 TLGKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
G M+W + G +I+ ++G + N Q P
Sbjct: 524 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 560
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 140/327 (42%), Gaps = 57/327 (17%)
Query: 100 WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEF 157
W+CD +C DGSDE +E TC S +F+C + +CI + + CDG+ DC + SDE
Sbjct: 41 WVCDGSAECQDGSDESQETCLSV-TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ 99
Query: 158 NCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVL 217
C +TCS +EF C + KCI + + CD + DC D SDE +C VL
Sbjct: 100 GC------------PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP----VL 143
Query: 218 RNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSY 277
C + C+ + + D PD D
Sbjct: 144 T-----------------------CGPASFQCNSSTCIPQLWACDNDPDC-EDGSDEWPQ 179
Query: 278 TCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCP 337
C Y+ D+ C A + HC +CI W+CDG DC D SDE +C
Sbjct: 180 RC---RGLYVFQGDSSPCSAF----EFHC--LSGECIHSSWRCDGGPDCKDKSDEE-NCA 229
Query: 338 ARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC---DLPCPDLEFKCASNGRCIL 394
CR FQC +GNC + CD DC+D SDE C L +FKC S G CI
Sbjct: 230 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECIT 288
Query: 395 NSWKCDGEPDCKDGSDEDPAMCHNRPC 421
C+ DC+D SDE C C
Sbjct: 289 LDKVCNMARDCRDWSDEPIKECGTNEC 315
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 98/244 (40%), Gaps = 60/244 (24%)
Query: 100 WLCDHDNDCGDGSDE-GKECHDKY------RTCSSEEFACQNFKCIRKTYHCDGEDDCGD 152
W CD+D DC DGSDE + C Y CS+ EF C + +CI ++ CDG DC D
Sbjct: 162 WACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKD 221
Query: 153 RSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC-- 210
+SDE NC TC +EF C + CI + CD E DC D SDE C
Sbjct: 222 KSDEENC------------AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVN 269
Query: 211 -------------SRDYRVLRNTTHRPYDIHVY--HPLKQLAYPNPCDGDNGGCSHLCLL 255
S + L + D + P+K+ N C +NGGCSH+C
Sbjct: 270 VTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGT-NECLDNNGGCSHVCND 328
Query: 256 SPVPGVDRAPDMYA-----------DARSPVS-----------YTCACPNQFYLDPRDNK 293
+ PD + + + P + Y C C F LDP K
Sbjct: 329 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH-TK 387
Query: 294 TCVA 297
C A
Sbjct: 388 ACKA 391
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 5 YKEN----RFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
++EN R D +Y + G+ K I K G++G + ++T ++I WPN
Sbjct: 509 FRENGSKPRAIVVDPVHGFMYWTDWGTPAK----IKKGGLNGVDIYSLVT--ENIQWPNG 562
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK 98
+TLD + RLYW D+ L I+S+D++G ++ ++ +K
Sbjct: 563 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK 600
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/316 (22%), Positives = 127/316 (40%), Gaps = 53/316 (16%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D NR Y++D++ + I ST+ +RA+ G+ S++ +++ DI P+
Sbjct: 429 LDTEVASNRIYWSDLSQRMIC-----STQLDRAH----GV--SSYDTVISR--DIQAPDG 475
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDG------------KHKHIVISGQKGWLCDHDNDC 108
L +D+ +YW D+ L ++ D G K + IV+ G++ D
Sbjct: 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 535
Query: 109 GDGSDEGKECHDKYRTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSDEFNCRDGSD 164
+G + +E N + + Y D + D +G +
Sbjct: 536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSID----VNGGN 591
Query: 165 EGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRP 224
D+ R + F+ F+ K + D ++ ++ S D +L P
Sbjct: 592 RKTILEDEKRL--AHPFSLAVFE--DKVFWTDIINEAIFSANRLTGS-DVNLLAENLLSP 646
Query: 225 YDIHVYHPLKQLAYPNPCDG---DNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCAC 281
D+ ++H L Q N C+ NGGC +LCL P P + + SP +TCAC
Sbjct: 647 EDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCL--PAPQI--------NPHSP-KFTCAC 695
Query: 282 PNQFYLDPRDNKTCVA 297
P+ L RD ++C+
Sbjct: 696 PDGMLL-ARDMRSCLT 710
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 213 bits (543), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 205/399 (51%), Gaps = 44/399 (11%)
Query: 1176 KLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 1234
+++V+ LDG+ RK L + PR I L P G++Y++ W I + GMDGS +R +
Sbjct: 107 RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFI 164
Query: 1235 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
+I WPN LTLDY ++LYWADA L++I +LDG ++ V+ G +PH FALTLFE
Sbjct: 165 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFE 223
Query: 1295 DHIYWTDWNTKSINRADKFNA---REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAK 1351
D +YWTDW+T SI +K+ REI + I M+I S +
Sbjct: 224 DILYWTDWSTHSILACNKYTGEGLREIHSDIFSP-MDIHAFS---------------QQR 267
Query: 1352 KCLDVDECATGIHHCSQVC--TNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNG 1409
+ + C CS +C + + Y C+C G L + CK +L ++ +
Sbjct: 268 QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN-GKTCKDGATEL-LLLARR 325
Query: 1410 PEIRAYETHKRRFRDVI---SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQ 1466
++R F D++ D R A+D DPV+ IYW D R IRRSF
Sbjct: 326 TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSF-------- 377
Query: 1467 VQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVS 1526
+ Q + I IAVDW+A N+YWT +G+ ++ V +G R+ L+S
Sbjct: 378 IDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT---DTGTD---RIEVTRLNGTMRKILIS 431
Query: 1527 ENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
E+LE P +I LDP +G M+W + G P+IE A +DGS R
Sbjct: 432 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR 470
Score = 123 bits (309), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 21/214 (9%)
Query: 1176 KLDVAELDGTNRKTLKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 1234
+++V L+GT RK L + +++PR I L P +GY+Y++ W I + +DGS+ R++
Sbjct: 415 RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD--RVV 472
Query: 1235 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
+ WPN L LDY ++YW DA D I ++ DG + +++ K+PH+F TL
Sbjct: 473 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLG 531
Query: 1295 DHIYWTDWNTKSINRADKFNA-REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKC 1353
D++YWTDW +SI R K +A RE+ I+ ++ G + N +
Sbjct: 532 DYVYWTDWQRRSIERVHKRSAEREV---IIDQLPDLMG-------------LKATNVHRV 575
Query: 1354 LDVDECATGIHHCSQVCTNLNGTYACSCNAGFTL 1387
+ + CA CS +C C+C GF L
Sbjct: 576 IGSNPCAEENGGCSHLCLYRPQGLRCACPIGFEL 609
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 1404 IVYSNGPEIRAYETH--KRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461
++Y+N ++R + K V+ A+D +IYW D + I+R+ E
Sbjct: 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT---E 68
Query: 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
K + Q++ + + +A DW+ +YWT S+ + ++ V++ DG R
Sbjct: 69 FNKTESV----QNVVVSGLLSPDGLACDWLGEKLYWTDSETN------RIEVSNLDGSLR 118
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
+ L + L+ P +IALDP+ G M+W + G P+IE A MDGS R
Sbjct: 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 118/322 (36%), Gaps = 69/322 (21%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF + Y++DV+ + I R+ TE + + + +L+ P+
Sbjct: 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---------VSGLLS-------PDG 88
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI---------------SGQKGWLCDHD 105
L D+ E+LYW D+ + I +LDG + ++ SG W
Sbjct: 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW----- 143
Query: 106 NDCGDGSD---EGKECHDKYRTCSSEEFACQNFKC---IRKTYHCDGEDDCGDRSDEFNC 159
D G+ G + ++ +SE + +K Y D + + +S+
Sbjct: 144 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL--- 200
Query: 160 RDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRN 219
+G + FA F+ I Y D +++ R + +
Sbjct: 201 -----DGTNRQAVVKGSLPHPFALTLFEDI--LYWTDWSTHSILACNKYT-GEGLREIHS 252
Query: 220 TTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTC 279
P DIH + +Q NPC DNGGCSHLCL+SPV Y C
Sbjct: 253 DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---------------YQC 297
Query: 280 ACPNQFYLDPRDNKTCVANCTQ 301
ACP L + KTC T+
Sbjct: 298 ACPTGVKL-LENGKTCKDGATE 318
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 6 KENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 65
+E R D +Y + G K I + +DGS+ R++ + WPN L LDY
Sbjct: 435 EEPRAIVLDPMVGYMYWTDWGEIPK----IERAALDGSD--RVVLVNTSLGWPNGLALDY 488
Query: 66 FTERLYWADAHLDYIASVDLDGKHKHIVI 94
++YW DA D I ++ DG + +++
Sbjct: 489 DEGKIYWGDAKTDKIEVMNTDGTGRRVLV 517
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 1243 PNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTD 1301
P+ L D+ E+LYW D+ + I +LDG + ++ + P AL +YWTD
Sbjct: 86 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 145
Query: 1302 W-NTKSINRA 1310
W I RA
Sbjct: 146 WGEVPKIERA 155
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D+ E Y+ D + I RS + DGS ++T + IA P+
Sbjct: 354 IDYDPVEGYIYWTDDEVRAIRRSFI---------------DGSGSQFVVTAQ--IAHPDG 396
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS 95
+ +D+ LYW D D I L+G + I+IS
Sbjct: 397 IAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILIS 431
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 18/58 (31%)
Query: 240 NPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVA 297
NPC +NGGCSHLCL P CACP F L D KTC+
Sbjct: 579 NPCAEENGGCSHLCLY-----------------RPQGLRCACPIGFEL-ISDMKTCIV 618
Score = 33.5 bits (75), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 13 ADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 72
D A+ +Y + G+ E + +IL ED + P A+ LD +YW
Sbjct: 399 VDWVARNLYWTDTGTDRIEVTRLN------GTMRKILISED-LEEPRAIVLDPMVGYMYW 451
Query: 73 AD-AHLDYIASVDLDGKHKHIVISGQKGWLCDHDNDCGDGSDEGK 116
D + I LDG + ++++ GW N DEGK
Sbjct: 452 TDWGEIPKIERAALDGSDRVVLVNTSLGW----PNGLALDYDEGK 492
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 26 GSTE----KERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA 81
G+TE R + +I +D +FT I+ +DI A+ D +YW D + I
Sbjct: 315 GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIR 374
Query: 82 SVDLDGKHKHIVISGQ 97
+DG V++ Q
Sbjct: 375 RSFIDGSGSQFVVTAQ 390
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 213 bits (542), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 205/399 (51%), Gaps = 44/399 (11%)
Query: 1176 KLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 1234
+++V+ LDG+ RK L + PR I L P G++Y++ W I + GMDGS +R +
Sbjct: 99 RIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFI 156
Query: 1235 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
+I WPN LTLDY ++LYWADA L++I +LDG ++ V+ G +PH FALTLFE
Sbjct: 157 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFE 215
Query: 1295 DHIYWTDWNTKSINRADKFNA---REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAK 1351
D +YWTDW+T SI +K+ REI + I M+I S +
Sbjct: 216 DILYWTDWSTHSILACNKYTGEGLREIHSDIFSP-MDIHAFS---------------QQR 259
Query: 1352 KCLDVDECATGIHHCSQVC--TNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNG 1409
+ + C CS +C + + Y C+C G L + CK +L ++ +
Sbjct: 260 QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN-GKTCKDGATEL-LLLARR 317
Query: 1410 PEIRAYETHKRRFRDVI---SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQ 1466
++R F D++ D R A+D DPV+ IYW D R IRRSF
Sbjct: 318 TDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSF-------- 369
Query: 1467 VQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVS 1526
+ Q + I IAVDW+A N+YWT +G+ ++ V +G R+ L+S
Sbjct: 370 IDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT---DTGTD---RIEVTRLNGTMRKILIS 423
Query: 1527 ENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
E+LE P +I LDP +G M+W + G P+IE A +DGS R
Sbjct: 424 EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR 462
Score = 123 bits (308), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 21/214 (9%)
Query: 1176 KLDVAELDGTNRKTLKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 1234
+++V L+GT RK L + +++PR I L P +GY+Y++ W I + +DGS+ R++
Sbjct: 407 RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD--RVV 464
Query: 1235 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
+ WPN L LDY ++YW DA D I ++ DG + +++ K+PH+F TL
Sbjct: 465 LVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLG 523
Query: 1295 DHIYWTDWNTKSINRADKFNA-REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKC 1353
D++YWTDW +SI R K +A RE+ I+ ++ G + N +
Sbjct: 524 DYVYWTDWQRRSIERVHKRSAEREV---IIDQLPDLMG-------------LKATNVHRV 567
Query: 1354 LDVDECATGIHHCSQVCTNLNGTYACSCNAGFTL 1387
+ + CA CS +C C+C GF L
Sbjct: 568 IGSNPCAEENGGCSHLCLYRPQGLRCACPIGFEL 601
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 1404 IVYSNGPEIRAYETH--KRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461
++Y+N ++R + K V+ A+D +IYW D + I+R+ E
Sbjct: 4 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT---E 60
Query: 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
K + Q++ + + +A DW+ +YWT S+ + ++ V++ DG R
Sbjct: 61 FNKTESV----QNVVVSGLLSPDGLACDWLGEKLYWTDSETN------RIEVSNLDGSLR 110
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
+ L + L+ P +IALDP+ G M+W + G P+IE A MDGS R
Sbjct: 111 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 154
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 118/322 (36%), Gaps = 69/322 (21%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF + Y++DV+ + I R+ TE + + + +L+ P+
Sbjct: 37 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---------VSGLLS-------PDG 80
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI---------------SGQKGWLCDHD 105
L D+ E+LYW D+ + I +LDG + ++ SG W
Sbjct: 81 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW----- 135
Query: 106 NDCGDGSD---EGKECHDKYRTCSSEEFACQNFKC---IRKTYHCDGEDDCGDRSDEFNC 159
D G+ G + ++ +SE + +K Y D + + +S+
Sbjct: 136 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL--- 192
Query: 160 RDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRN 219
+G + FA F+ I Y D +++ R + +
Sbjct: 193 -----DGTNRQAVVKGSLPHPFALTLFEDI--LYWTDWSTHSILACNKYT-GEGLREIHS 244
Query: 220 TTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTC 279
P DIH + +Q NPC DNGGCSHLCL+SPV Y C
Sbjct: 245 DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---------------YQC 289
Query: 280 ACPNQFYLDPRDNKTCVANCTQ 301
ACP L + KTC T+
Sbjct: 290 ACPTGVKL-LENGKTCKDGATE 310
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 6 KENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 65
+E R D +Y + G K I + +DGS+ R++ + WPN L LDY
Sbjct: 427 EEPRAIVLDPMVGYMYWTDWGEIPK----IERAALDGSD--RVVLVNTSLGWPNGLALDY 480
Query: 66 FTERLYWADAHLDYIASVDLDGKHKHIVI 94
++YW DA D I ++ DG + +++
Sbjct: 481 DEGKIYWGDAKTDKIEVMNTDGTGRRVLV 509
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 1243 PNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTD 1301
P+ L D+ E+LYW D+ + I +LDG + ++ + P AL +YWTD
Sbjct: 78 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 137
Query: 1302 WN-TKSINRA 1310
W I RA
Sbjct: 138 WGEVPKIERA 147
Score = 38.1 bits (87), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D+ E Y+ D + I RS + DGS ++T + IA P+
Sbjct: 346 IDYDPVEGYIYWTDDEVRAIRRSFI---------------DGSGSQFVVTAQ--IAHPDG 388
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS 95
+ +D+ LYW D D I L+G + I+IS
Sbjct: 389 IAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILIS 423
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 18/58 (31%)
Query: 240 NPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVA 297
NPC +NGGCSHLCL P CACP F L D KTC+
Sbjct: 571 NPCAEENGGCSHLCLY-----------------RPQGLRCACPIGFEL-ISDMKTCIV 610
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 13 ADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 72
D A+ +Y + G+ E + +IL ED + P A+ LD +YW
Sbjct: 391 VDWVARNLYWTDTGTDRIEVTRLN------GTMRKILISED-LEEPRAIVLDPMVGYMYW 443
Query: 73 AD-AHLDYIASVDLDGKHKHIVISGQKGWLCDHDNDCGDGSDEGK 116
D + I LDG + ++++ GW N DEGK
Sbjct: 444 TDWGEIPKIERAALDGSDRVVLVNTSLGW----PNGLALDYDEGK 484
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 26 GSTE----KERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA 81
G+TE R + +I +D +FT I+ +DI A+ D +YW D + I
Sbjct: 307 GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIR 366
Query: 82 SVDLDGKHKHIVISGQ 97
+DG V++ Q
Sbjct: 367 RSFIDGSGSQFVVTAQ 382
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 154 bits (388), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 210/449 (46%), Gaps = 77/449 (17%)
Query: 1176 KLDVAELDGTNRKTLKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 1234
+++V++LDG +R+ L + PR + L P G++Y++ W + I + MDGS T ++
Sbjct: 101 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 160
Query: 1235 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
++ N LT+DY RLYW D + I S ++ G ++ ++ +PH F LT ++
Sbjct: 161 P---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQ 215
Query: 1295 DHIYWTDWNTKSINRADKFNA--REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKK 1352
D+IYWTDW+ +SI RA+K + R I G L + M+I + + G+
Sbjct: 216 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDIL---VFHSSRQSGW--------- 263
Query: 1353 CLDVDECATGIHHCSQVCTNLN-GTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPE 1411
+ECA+ HCS +C + G + C C A ++L + + C A L ++S
Sbjct: 264 ----NECASSNGHCSHLCLAVPVGGFVCGCPAHYSL-NADNRTCSAPTTFL--LFSQKSA 316
Query: 1412 IRAYETHKRRFRDV---ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQ 1468
I +++ D+ I R + A+D DP+D+ +YW+DS IR++ +Q V
Sbjct: 317 INRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV 376
Query: 1469 AGF--GQDLGIKSIGKLTAIAVDWIAHNIYWT-----------VSDRS-GSKPKG----- 1509
Q+L I+ +++D + IYWT + RS G KG
Sbjct: 377 VSSVPSQNLEIQPYD----LSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRP 432
Query: 1510 ----------------------KVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWA 1547
K+ A DG R L L P ++ALD LGK+FWA
Sbjct: 433 RAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWA 492
Query: 1548 ETGASPRIESAWMDGSHRSATQISNRQAP 1576
++ RIES+ + G++R + SN P
Sbjct: 493 DSDLR-RIESSDLSGANRIVLEDSNILQP 520
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 1399 DNKLTIVYSNGPEIR--AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 1456
D + +++S +IR + ET+ ++ + ALD D D IYW D + I R
Sbjct: 2 DPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISR 61
Query: 1457 SFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHN 1516
+FM + V FG D +AVDW+ N+YW ++ V+
Sbjct: 62 AFMNGSALEHV-VEFGLDYP-------EGMAVDWLGKNLYW------ADTGTNRIEVSKL 107
Query: 1517 DGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRS 1566
DG++R+ LV ++L+SP ++ALDP G M+W E G P+I+ A MDGS R+
Sbjct: 108 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 157
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 32/221 (14%)
Query: 1177 LDVAELDGTNRKTLKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKI---GMDGSNFTR 1232
++V LDG + + QD PR I ++P GY+YF+ NLQ KI +DG+ R
Sbjct: 411 INVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFT--NLQERSPKIERAALDGTE--R 466
Query: 1233 ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL 1292
+ ++ P AL LD +L+WAD+ L I S DL G ++ IV+ + LT+
Sbjct: 467 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR-IVLEDSNILQPVGLTV 525
Query: 1293 FEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKK 1352
FE+ +YW D + I + D +TG G + + +A K
Sbjct: 526 FENWLYWIDKQQQMIEKID-----------------MTGREGRTKVQARIAQLSDIHAVK 568
Query: 1353 CLDVDE-----CATGIHHCSQVC-TNLNGTYACSCNAGFTL 1387
L++ E CA CS +C +GT CSC L
Sbjct: 569 ELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVL 609
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 118/325 (36%), Gaps = 82/325 (25%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF +NR Y+ D++ KTI R+ + + E ++ + G+D +P
Sbjct: 40 LDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLD---------------YPEG 82
Query: 61 LTLDYFTERLYWADA-------------HLDYIASVDLDGKHKHIVISGQKGWLC----- 102
+ +D+ + LYWAD H + DLD + + + +G++
Sbjct: 83 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP-RALALDPAEGFMYWTEWG 141
Query: 103 ---DHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSD 155
D DGS+ RT N I R+ Y D + + + S+
Sbjct: 142 GKPKIDRAAMDGSE---------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 192
Query: 156 EFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYR 215
H F ++ Y D +R+++ ++
Sbjct: 193 MLGLNREVIADDLPH---------PFGLTQYQ--DYIYWTDWSRRSIERANK-TSGQNRT 240
Query: 216 VLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPV 275
+++ DI V+H +Q + N C NG CSHLCL PV G
Sbjct: 241 IIQGHLDYVMDILVFHSSRQSGW-NECASSNGHCSHLCLAVPVGG--------------- 284
Query: 276 SYTCACPNQFYLDPRDNKTCVANCT 300
+ C CP + L+ DN+TC A T
Sbjct: 285 -FVCGCPAHYSLNA-DNRTCSAPTT 307
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1475 LGIKSIGKLTAIAVDWIAHNIYWT-VSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPS 1533
+ + + + +A+ D + IYWT +S ++ S+ A +G +V L+ P
Sbjct: 29 IPLTGVKEASALDFDVTDNRIYWTDISLKTISR-------AFMNGSALEHVVEFGLDYPE 81
Query: 1534 SIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
+A+D ++WA+TG + RIE + +DG HR + +P
Sbjct: 82 GMAVDWLGKNLYWADTGTN-RIEVSKLDGQHRQVLVWKDLDSP 123
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 226 DIHVYHPLKQLAY-PNPCDGDNGGCSHLCLL 255
DIH L Y +PC DNGGCSH+CL+
Sbjct: 563 DIHAVKELNLQEYRQHPCAQDNGGCSHICLV 593
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 35 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIV 93
I + +DG+ R + ++ P AL LD +L+WAD+ L I S DL G ++ ++
Sbjct: 456 IERAALDGTE--REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL 512
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 41 DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKGW 100
D S RI+ + +I P LT+ F LYW D I +D+ G+ + +
Sbjct: 503 DLSGANRIVLEDSNILQPVGLTV--FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ 560
Query: 101 LCD 103
L D
Sbjct: 561 LSD 563
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 210/449 (46%), Gaps = 77/449 (17%)
Query: 1176 KLDVAELDGTNRKTLKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 1234
+++V++LDG +R+ L + PR + L P G++Y++ W + I + MDGS T ++
Sbjct: 103 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 162
Query: 1235 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
++ N LT+DY RLYW D + I S ++ G ++ ++ +PH F LT ++
Sbjct: 163 P---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQ 217
Query: 1295 DHIYWTDWNTKSINRADKFNA--REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKK 1352
D+IYWTDW+ +SI RA+K + R I G L + M+I + + G+
Sbjct: 218 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDIL---VFHSSRQSGW--------- 265
Query: 1353 CLDVDECATGIHHCSQVCTNLN-GTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPE 1411
+ECA+ HCS +C + G + C C A ++L + + C A L ++S
Sbjct: 266 ----NECASSNGHCSHLCLAVPVGGFVCGCPAHYSL-NADNRTCSAPTTFL--LFSQKSA 318
Query: 1412 IRAYETHKRRFRDV---ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQ 1468
I +++ D+ I R + A+D DP+D+ +YW+DS IR++ +Q V
Sbjct: 319 INRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV 378
Query: 1469 AGF--GQDLGIKSIGKLTAIAVDWIAHNIYWT-----------VSDRS-GSKPKG----- 1509
Q+L I+ +++D + IYWT + RS G KG
Sbjct: 379 VSSVPSQNLEIQPYD----LSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRP 434
Query: 1510 ----------------------KVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWA 1547
K+ A DG R L L P ++ALD LGK+FWA
Sbjct: 435 RAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWA 494
Query: 1548 ETGASPRIESAWMDGSHRSATQISNRQAP 1576
++ RIES+ + G++R + SN P
Sbjct: 495 DSDLR-RIESSDLSGANRIVLEDSNILQP 522
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 1404 IVYSNGPEIR--AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461
+++S +IR + ET+ ++ + ALD D D IYW D + I R+FM
Sbjct: 9 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68
Query: 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
+ V FG D +AVDW+ N+YW ++ V+ DG++R
Sbjct: 69 SALEHV-VEFGLDYP-------EGMAVDWLGKNLYW------ADTGTNRIEVSKLDGQHR 114
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRS 1566
+ LV ++L+SP ++ALDP G M+W E G P+I+ A MDGS R+
Sbjct: 115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 32/221 (14%)
Query: 1177 LDVAELDGTNRKTLKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKI---GMDGSNFTR 1232
++V LDG + + QD PR + ++P GY+YF+ NLQ KI +DG+ R
Sbjct: 413 INVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFT--NLQERSPKIERAALDGTE--R 468
Query: 1233 ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL 1292
+ ++ P AL LD +L+WAD+ L I S DL G ++ IV+ + LT+
Sbjct: 469 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR-IVLEDSNILQPVGLTV 527
Query: 1293 FEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKK 1352
FE+ +YW D + I + D +TG G + + +A K
Sbjct: 528 FENWLYWIDKQQQMIEKID-----------------MTGREGRTKVQARIAQLSDIHAVK 570
Query: 1353 CLDVDE-----CATGIHHCSQVC-TNLNGTYACSCNAGFTL 1387
L++ E CA CS +C +GT CSC L
Sbjct: 571 ELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVL 611
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 118/325 (36%), Gaps = 82/325 (25%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF +NR Y+ D++ KTI R+ + + E ++ + G+D +P
Sbjct: 42 LDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLD---------------YPEG 84
Query: 61 LTLDYFTERLYWADA-------------HLDYIASVDLDGKHKHIVISGQKGWLC----- 102
+ +D+ + LYWAD H + DLD + + + +G++
Sbjct: 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP-RALALDPAEGFMYWTEWG 143
Query: 103 ---DHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSD 155
D DGS+ RT N I R+ Y D + + + S+
Sbjct: 144 GKPKIDRAAMDGSE---------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 194
Query: 156 EFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYR 215
H F ++ Y D +R+++ ++
Sbjct: 195 MLGLNREVIADDLPH---------PFGLTQYQ--DYIYWTDWSRRSIERANK-TSGQNRT 242
Query: 216 VLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPV 275
+++ DI V+H +Q + N C NG CSHLCL PV G
Sbjct: 243 IIQGHLDYVMDILVFHSSRQSGW-NECASSNGHCSHLCLAVPVGG--------------- 286
Query: 276 SYTCACPNQFYLDPRDNKTCVANCT 300
+ C CP + L+ DN+TC A T
Sbjct: 287 -FVCGCPAHYSLNA-DNRTCSAPTT 309
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1475 LGIKSIGKLTAIAVDWIAHNIYWT-VSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPS 1533
+ + + + +A+ D + IYWT +S ++ S+ A +G +V L+ P
Sbjct: 31 IPLTGVKEASALDFDVTDNRIYWTDISLKTISR-------AFMNGSALEHVVEFGLDYPE 83
Query: 1534 SIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
+A+D ++WA+TG + RIE + +DG HR + +P
Sbjct: 84 GMAVDWLGKNLYWADTGTN-RIEVSKLDGQHRQVLVWKDLDSP 125
Score = 33.5 bits (75), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 226 DIHVYHPLKQLAY-PNPCDGDNGGCSHLCLL 255
DIH L Y +PC DNGGCSH+CL+
Sbjct: 565 DIHAVKELNLQEYRQHPCAQDNGGCSHICLV 595
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 35 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIV 93
I + +DG+ R + ++ P AL LD +L+WAD+ L I S DL G ++ ++
Sbjct: 458 IERAALDGTE--REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL 514
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 41 DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKGW 100
D S RI+ + +I P LT+ F LYW D I +D+ G+ + +
Sbjct: 505 DLSGANRIVLEDSNILQPVGLTV--FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ 562
Query: 101 LCD 103
L D
Sbjct: 563 LSD 565
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 153 bits (386), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 128/449 (28%), Positives = 210/449 (46%), Gaps = 77/449 (17%)
Query: 1176 KLDVAELDGTNRKTLKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 1234
+++V++LDG +R+ L + PR + L P G++Y++ W + I + MDGS T ++
Sbjct: 108 RIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV 167
Query: 1235 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
++ N LT+DY RLYW D + I S ++ G ++ ++ +PH F LT ++
Sbjct: 168 P---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQ 222
Query: 1295 DHIYWTDWNTKSINRADKFNA--REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKK 1352
D+IYWTDW+ +SI RA+K + R I G L + M+I + + G+
Sbjct: 223 DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDIL---VFHSSRQSGW--------- 270
Query: 1353 CLDVDECATGIHHCSQVCTNLN-GTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPE 1411
+ECA+ HCS +C + G + C C A ++L + + C A L ++S
Sbjct: 271 ----NECASSNGHCSHLCLAVPVGGFVCGCPAHYSL-NADNRTCSAPTTFL--LFSQKSA 323
Query: 1412 IRAYETHKRRFRDV---ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQ 1468
I +++ D+ I R + A+D DP+D+ +YW+DS IR++ +Q V
Sbjct: 324 INRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVV 383
Query: 1469 AGF--GQDLGIKSIGKLTAIAVDWIAHNIYWT-----------VSDRS-GSKPKG----- 1509
Q+L I+ +++D + IYWT + RS G KG
Sbjct: 384 VSSVPSQNLEIQPYD----LSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRP 439
Query: 1510 ----------------------KVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWA 1547
K+ A DG R L L P ++ALD LGK+FWA
Sbjct: 440 RAIVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWA 499
Query: 1548 ETGASPRIESAWMDGSHRSATQISNRQAP 1576
++ RIES+ + G++R + SN P
Sbjct: 500 DSDLR-RIESSDLSGANRIVLEDSNILQP 527
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 85/165 (51%), Gaps = 16/165 (9%)
Query: 1404 IVYSNGPEIR--AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461
+++S +IR + ET+ ++ + ALD D D IYW D + I R+FM
Sbjct: 14 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 73
Query: 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
+ V FG D +AVDW+ N+YW ++ V+ DG++R
Sbjct: 74 SALEHV-VEFGLDYP-------EGMAVDWLGKNLYW------ADTGTNRIEVSKLDGQHR 119
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRS 1566
+ LV ++L+SP ++ALDP G M+W E G P+I+ A MDGS R+
Sbjct: 120 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 164
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 99/221 (44%), Gaps = 32/221 (14%)
Query: 1177 LDVAELDGTNRKTLKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKI---GMDGSNFTR 1232
++V LDG + + QD PR I ++P GY+YF+ NLQ KI +DG+ R
Sbjct: 418 INVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFT--NLQERSPKIERAALDGTE--R 473
Query: 1233 ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL 1292
+ ++ P AL LD +L+WAD+ L I S DL G ++ IV+ + LT+
Sbjct: 474 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR-IVLEDSNILQPVGLTV 532
Query: 1293 FEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKK 1352
FE+ +YW D + I + D +TG G + + +A K
Sbjct: 533 FENWLYWIDKQQQMIEKID-----------------MTGREGRTKVQARIAQLSDIHAVK 575
Query: 1353 CLDVDE-----CATGIHHCSQVC-TNLNGTYACSCNAGFTL 1387
L++ E CA CS +C +GT CSC L
Sbjct: 576 ELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVL 616
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 118/325 (36%), Gaps = 82/325 (25%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF +NR Y+ D++ KTI R+ + + E ++ + G+D +P
Sbjct: 47 LDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLD---------------YPEG 89
Query: 61 LTLDYFTERLYWADA-------------HLDYIASVDLDGKHKHIVISGQKGWLC----- 102
+ +D+ + LYWAD H + DLD + + + +G++
Sbjct: 90 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP-RALALDPAEGFMYWTEWG 148
Query: 103 ---DHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSD 155
D DGS+ RT N I R+ Y D + + + S+
Sbjct: 149 GKPKIDRAAMDGSE---------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSN 199
Query: 156 EFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYR 215
H F ++ Y D +R+++ ++
Sbjct: 200 MLGLNREVIADDLPH---------PFGLTQYQ--DYIYWTDWSRRSIERANK-TSGQNRT 247
Query: 216 VLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPV 275
+++ DI V+H +Q + N C NG CSHLCL PV G
Sbjct: 248 IIQGHLDYVMDILVFHSSRQSGW-NECASSNGHCSHLCLAVPVGG--------------- 291
Query: 276 SYTCACPNQFYLDPRDNKTCVANCT 300
+ C CP + L+ DN+TC A T
Sbjct: 292 -FVCGCPAHYSLNA-DNRTCSAPTT 314
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1475 LGIKSIGKLTAIAVDWIAHNIYWT-VSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPS 1533
+ + + + +A+ D + IYWT +S ++ S+ A +G +V L+ P
Sbjct: 36 IPLTGVKEASALDFDVTDNRIYWTDISLKTISR-------AFMNGSALEHVVEFGLDYPE 88
Query: 1534 SIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
+A+D ++WA+TG + RIE + +DG HR + +P
Sbjct: 89 GMAVDWLGKNLYWADTGTN-RIEVSKLDGQHRQVLVWKDLDSP 130
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 226 DIHVYHPLKQLAY-PNPCDGDNGGCSHLCLL 255
DIH L Y +PC DNGGCSH+CL+
Sbjct: 570 DIHAVKELNLQEYRQHPCAQDNGGCSHICLV 600
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 35 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIV 93
I + +DG+ R + ++ P AL LD +L+WAD+ L I S DL G ++ ++
Sbjct: 463 IERAALDGTE--REVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL 519
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 41 DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKGW 100
D S RI+ + +I P LT+ F LYW D I +D+ G+ + +
Sbjct: 510 DLSGANRIVLEDSNILQPVGLTV--FENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ 567
Query: 101 LCD 103
L D
Sbjct: 568 LSD 570
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 113/218 (51%), Gaps = 21/218 (9%)
Query: 1171 DVRSIKLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 1229
D + +++VA LDG +RK L +++ PR I LHP G +Y++ W I MDGS
Sbjct: 177 DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236
Query: 1230 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFA 1289
R + + + WPN LT+DY R+YW DA I +LDG H+ VIS Q +PH FA
Sbjct: 237 --RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFA 293
Query: 1290 LTLFEDHIYWTDWNTKSINRADKFNAR--EIQAGILHHCMNITGGSGYLCTCYQGFIIDK 1347
+T+FED +YWTDW+TKSIN A+KF + EI LH M+I +
Sbjct: 294 ITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDI-----------HTLHPQR 342
Query: 1348 NNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGF 1385
A K + C C+ +C Y C+C GF
Sbjct: 343 QPAGK----NRCGDNNGGCTHLCLPSGQNYTCACPTGF 376
Score = 120 bits (300), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 125/229 (54%), Gaps = 17/229 (7%)
Query: 1337 CTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCK 1396
CTC+ G+ + ++ + C DV+ECA +CSQ CTN G + C C AG+ L CK
Sbjct: 26 CTCHTGYRLTED-GRTCQDVNECAEE-GYCSQGCTNSEGAFQCWCEAGYELRPDRRS-CK 82
Query: 1397 ANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 1456
A + ++++N +IR H+ + ++++ ALD E+++W D I R
Sbjct: 83 ALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILR 142
Query: 1457 SFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHN 1516
+ + + +V + G++S G L AVDW+ +YWT S S ++ VA+
Sbjct: 143 ANLNGSNVEEVVS-----TGLESPGGL---AVDWVHDKLYWTDSGTS------RIEVANL 188
Query: 1517 DGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
DG +R+ L+ ++LE P +IAL P G ++W + G +PRIE++ MDGS R
Sbjct: 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 115/306 (37%), Gaps = 71/306 (23%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DFH++ +++DV I R+ ++GSN +++ + P
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRA---------------NLNGSNVEEVVS--TGLESPGG 163
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI---------------SGQKGWLCDHD 105
L +D+ ++LYW D+ I +LDG H+ +++ G W
Sbjct: 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW----- 218
Query: 106 NDCGDGSDEGKECHDK--YRTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSDEFNC 159
D G+ D R + N I R+ Y D + +R++
Sbjct: 219 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN---- 274
Query: 160 RDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRN 219
DGS FA F+ Y D + +++F ++ ++RN
Sbjct: 275 LDGSHRKAVISQGL----PHPFAITVFE--DSLYWTDWHTKSINSANKFT-GKNQEIIRN 327
Query: 220 TTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTC 279
H P DIH HP +Q A N C +NGGC+HLCL S +YTC
Sbjct: 328 KLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCL-----------------PSGQNYTC 370
Query: 280 ACPNQF 285
ACP F
Sbjct: 371 ACPTGF 376
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 1170 LDVRSIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 1229
+D+R + +E L +++ + H V++S L + + ++GSN
Sbjct: 96 IDIRQVLPHRSEY-----TLLLNNLENAIALDFHHRRELVFWSDVTLDRIL-RANLNGSN 149
Query: 1230 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI-SGQKVPHVF 1288
+++ + P L +D+ ++LYW D+ I +LDG H+ +++ + P
Sbjct: 150 VEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 207
Query: 1289 ALTLFEDHIYWTDW-NTKSI 1307
AL E IYWTDW NT I
Sbjct: 208 ALHPMEGTIYWTDWGNTPRI 227
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 1244 NALTLDYFTER--LYWADAHLDYIASVDLDGKH-KHIVISGQKVPHVFALTLFEDHIYWT 1300
NA+ LD+ R ++W+D LD I +L+G + + +V +G + P A+ D +YWT
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 176
Query: 1301 DWNTKSINRAD 1311
D T I A+
Sbjct: 177 DSGTSRIEVAN 187
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 137 bits (344), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 111/213 (52%), Gaps = 21/213 (9%)
Query: 1176 KLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 1234
+++VA LDG +RK L +++ PR I LHP G +Y++ W I MDGS R +
Sbjct: 139 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRI 196
Query: 1235 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
+ + WPN LT+DY R+YW DA I +LDG H+ VIS Q +PH FA+T+FE
Sbjct: 197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVFE 255
Query: 1295 DHIYWTDWNTKSINRADKFNAR--EIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKK 1352
D +YWTDW+TKSIN A+KF + EI LH M+I + A K
Sbjct: 256 DSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDI-----------HTLHPQRQPAGK 304
Query: 1353 CLDVDECATGIHHCSQVCTNLNGTYACSCNAGF 1385
+ C C+ +C Y C+C GF
Sbjct: 305 ----NRCGDNNGGCTHLCLPSGQNYTCACPTGF 333
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 113/210 (53%), Gaps = 16/210 (7%)
Query: 1356 VDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAY 1415
V+ECA +CSQ CTN G + C C AG+ L CKA + ++++N +IR
Sbjct: 1 VNECAEE-GYCSQGCTNSEGAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQV 58
Query: 1416 ETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDL 1475
H+ + ++++ ALD E+++W D I R+ + + +V +
Sbjct: 59 LPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-----T 113
Query: 1476 GIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSI 1535
G++S G L AVDW+ +YWT S S ++ VA+ DG +R+ L+ ++LE P +I
Sbjct: 114 GLESPGGL---AVDWVHDKLYWTDSGTS------RIEVANLDGAHRKVLLWQSLEKPRAI 164
Query: 1536 ALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
AL P G ++W + G +PRIE++ MDGS R
Sbjct: 165 ALHPMEGTIYWTDWGNTPRIEASSMDGSGR 194
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 115/306 (37%), Gaps = 71/306 (23%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DFH++ +++DV I R+ ++GSN +++ + P
Sbjct: 78 LDFHHRRELVFWSDVTLDRILRA---------------NLNGSNVEEVVS--TGLESPGG 120
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI---------------SGQKGWLCDHD 105
L +D+ ++LYW D+ I +LDG H+ +++ G W
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW----- 175
Query: 106 NDCGDGSDEGKECHDK--YRTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSDEFNC 159
D G+ D R + N I R+ Y D + +R++
Sbjct: 176 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN---- 231
Query: 160 RDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRN 219
DGS FA F+ Y D + +++F ++ ++RN
Sbjct: 232 LDGSHRKAVISQGL----PHPFAITVFE--DSLYWTDWHTKSINSANKF-TGKNQEIIRN 284
Query: 220 TTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTC 279
H P DIH HP +Q A N C +NGGC+HLCL S +YTC
Sbjct: 285 KLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCL-----------------PSGQNYTC 327
Query: 280 ACPNQF 285
ACP F
Sbjct: 328 ACPTGF 333
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 1220 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI 1279
I + ++GSN +++ + P L +D+ ++LYW D+ I +LDG H+ +++
Sbjct: 97 ILRANLNGSNVEEVVS--TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL 154
Query: 1280 -SGQKVPHVFALTLFEDHIYWTDW-NTKSI 1307
+ P AL E IYWTDW NT I
Sbjct: 155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRI 184
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 1244 NALTLDYFTER--LYWADAHLDYIASVDLDGKH-KHIVISGQKVPHVFALTLFEDHIYWT 1300
NA+ LD+ R ++W+D LD I +L+G + + +V +G + P A+ D +YWT
Sbjct: 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT 133
Query: 1301 DWNTKSINRAD 1311
D T I A+
Sbjct: 134 DSGTSRIEVAN 144
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 130 bits (326), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 7/157 (4%)
Query: 1171 DVRSIKLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 1229
D + +++V+ LDG+ RK L + PR I L P G++Y++ W I + GMDGS
Sbjct: 97 DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS- 155
Query: 1230 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFA 1289
+R + +I WPN LTLDY ++LYWADA L++I +LDG ++ V+ G +PH FA
Sbjct: 156 -SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFA 213
Query: 1290 LTLFEDHIYWTDWNTKSINRADKFNA---REIQAGIL 1323
LTLFED +YWTDW+T SI +K+ REI + I
Sbjct: 214 LTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF 250
Score = 74.3 bits (181), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 1404 IVYSNGPEIRAYETH--KRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461
++Y+N ++R + K V+ A+D +IYW D + I+R+ E
Sbjct: 7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT---E 63
Query: 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
K + Q++ + + +A DW+ +YWT S+ + ++ V++ DG R
Sbjct: 64 FNKTESV----QNVVVSGLLSPDGLACDWLGEKLYWTDSETN------RIEVSNLDGSLR 113
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
+ L + L+ P +IALDP+ G M+W + G P+IE A MDGS R
Sbjct: 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 157
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 118/316 (37%), Gaps = 69/316 (21%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF + Y++DV+ + I R+ TE + + + +L+ P+
Sbjct: 40 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---------VSGLLS-------PDG 83
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI---------------SGQKGWLCDHD 105
L D+ E+LYW D+ + I +LDG + ++ SG W
Sbjct: 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW----- 138
Query: 106 NDCGDGSD---EGKECHDKYRTCSSEEFACQNFKC---IRKTYHCDGEDDCGDRSDEFNC 159
D G+ G + ++ +SE + +K Y D + + +S+
Sbjct: 139 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN---- 194
Query: 160 RDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRN 219
DG++ + FA F+ I Y D +++ R + +
Sbjct: 195 LDGTNR----QAVVKGSLPHPFALTLFEDI--LYWTDWSTHSILACNKY-TGEGLREIHS 247
Query: 220 TTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTC 279
P DIH + +Q NPC DNGGCSHLCL+SPV Y C
Sbjct: 248 DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---------------YQC 292
Query: 280 ACPNQFYLDPRDNKTC 295
ACP L + KTC
Sbjct: 293 ACPTGVKL-LENGKTC 307
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 1243 PNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTD 1301
P+ L D+ E+LYW D+ + I +LDG + ++ + P AL +YWTD
Sbjct: 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 140
Query: 1302 WN-TKSINRA 1310
W I RA
Sbjct: 141 WGEVPKIERA 150
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 7/157 (4%)
Query: 1171 DVRSIKLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 1229
D + +++V+ LDG+ RK L + PR I L P G++Y++ W I + GMDGS
Sbjct: 94 DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS- 152
Query: 1230 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFA 1289
+R + +I WPN LTLDY ++LYWADA L++I +LDG ++ V+ G +PH FA
Sbjct: 153 -SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFA 210
Query: 1290 LTLFEDHIYWTDWNTKSINRADKFNA---REIQAGIL 1323
LTLFED +YWTDW+T SI +K+ REI + I
Sbjct: 211 LTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF 247
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 1404 IVYSNGPEIRAYETH--KRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461
++Y+N ++R + K V+ A+D +IYW D + I+R+ E
Sbjct: 4 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT---E 60
Query: 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
K + Q++ + + +A DW+ +YWT S+ + ++ V++ DG R
Sbjct: 61 FNKTESV----QNVVVSGLLSPDGLACDWLGEKLYWTDSETN------RIEVSNLDGSLR 110
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
+ L + L+ P +IALDP+ G M+W + G P+IE A MDGS R
Sbjct: 111 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 154
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 120/322 (37%), Gaps = 69/322 (21%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF + Y++DV+ + I R+ TE + + + +L+ P+
Sbjct: 37 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV---------VSGLLS-------PDG 80
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI---------------SGQKGWLCDHD 105
L D+ E+LYW D+ + I +LDG + ++ SG W
Sbjct: 81 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW----- 135
Query: 106 NDCGDGSD---EGKECHDKYRTCSSEEFACQNFKC---IRKTYHCDGEDDCGDRSDEFNC 159
D G+ G + ++ +SE + +K Y D + + +S+
Sbjct: 136 TDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN---- 191
Query: 160 RDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRN 219
DG++ + FA F+ I Y D +++ R + +
Sbjct: 192 LDGTNR----QAVVKGSLPHPFALTLFEDI--LYWTDWSTHSILACNKY-TGEGLREIHS 244
Query: 220 TTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTC 279
P DIH + +Q NPC DNGGCSHLCL+SPV Y C
Sbjct: 245 DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPF---------------YQC 289
Query: 280 ACPNQFYLDPRDNKTCVANCTQ 301
ACP L + KTC T+
Sbjct: 290 ACPTGVKL-LENGKTCKDGATE 310
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 1243 PNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTD 1301
P+ L D+ E+LYW D+ + I +LDG + ++ + P AL +YWTD
Sbjct: 78 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD 137
Query: 1302 WN-TKSINRA 1310
W I RA
Sbjct: 138 WGEVPKIERA 147
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR
IN AN Extended Conformation
Length = 440
Score = 118 bits (295), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/416 (24%), Positives = 183/416 (43%), Gaps = 100/416 (24%)
Query: 951 CTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHK 1010
C +K++C +G CI ++C+ +C D SDE P + C ++
Sbjct: 1 CEGPNKFKCHSGECITLDKVCNMARDCRDWSDE-------------PIK-----ECGTNE 42
Query: 1011 CIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSD 1070
C+D C+HV C DL C C +G + LV + CED
Sbjct: 43 CLDNNGGCSHV--CNDLKIGYEC------------LCPDG----FQLVAQRR--CED--- 79
Query: 1071 EPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDD-------IGTVSPS--SNK 1121
+DEC +T C CV+ GY C+C G+ D +G+++ +N+
Sbjct: 80 ------IDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 131
Query: 1122 VLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEVTKIPLCALDV--------- 1172
R + ++S + + +V + V NR ++++ +C+ +
Sbjct: 132 HEVRKMTLDRSE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 190
Query: 1173 -----RSIK-----------------------LDVAELDGTNRKTL-KTAIQDPRGITLH 1203
R I+ + VA+ G RKTL + PR I +
Sbjct: 191 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVD 250
Query: 1204 PGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD 1263
P G++Y++ W A I K G++G + ++T ++I WPN +TLD + RLYW D+ L
Sbjct: 251 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLH 308
Query: 1264 YIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKSINRADKFNAREI 1318
I+S+D++G ++ ++ +K + H F+L +FED ++WTD ++I A++ ++
Sbjct: 309 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 364
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 121/277 (43%), Gaps = 18/277 (6%)
Query: 1301 DWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECA 1360
DW+ + I + G H C ++ GY C C GF + ++C D+DEC
Sbjct: 29 DWSDEPIKECGTNECLDNNGGCSHVCNDLK--IGYECLCPDGFQLVAQ--RRCEDIDECQ 84
Query: 1361 TGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKR 1420
CSQ+C NL G Y C C GF L D + CKA + + ++N E+R +
Sbjct: 85 DP-DTCSQLCVNLEGGYKCQCEEGFQL-DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRS 142
Query: 1421 RFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGI-KS 1479
+ +I + R + ALD + IYW D R I Q + D I +
Sbjct: 143 EYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMI-----CSTQLDRAHGVSSYDTVISRD 197
Query: 1480 IGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDP 1539
I +AVDWI NIYWT S G V VA G R++L EN P +I +DP
Sbjct: 198 IQAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 251
Query: 1540 TLGKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
G M+W + G +I+ ++G + N Q P
Sbjct: 252 VHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 288
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 33 AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHI 92
A I K G++G + ++T ++I WPN +TLD + RLYW D+ L I+S+D++G ++
Sbjct: 265 AKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 322
Query: 93 VISGQK 98
++ +K
Sbjct: 323 ILEDEK 328
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 125/316 (39%), Gaps = 53/316 (16%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D NR Y++D++ + I ST+ +RA+ S++ +++ DI P+
Sbjct: 157 LDTEVASNRIYWSDLSQRMIC-----STQLDRAH------GVSSYDTVISR--DIQAPDG 203
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDG------------KHKHIVISGQKGWLCDHDNDC 108
L +D+ +YW D+ L ++ D G K + IV+ G++ D
Sbjct: 204 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 263
Query: 109 GDGSDEGKECHDKYRTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSDEFNCRDGSD 164
+G + +E N + + Y D + D +G +
Sbjct: 264 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV----NGGN 319
Query: 165 EGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRP 224
D+ R + F+ F+ K + D ++ ++ S D +L P
Sbjct: 320 RKTILEDEKRL--AHPFSLAVFE--DKVFWTDIINEAIFSANRLTGS-DVNLLAENLLSP 374
Query: 225 YDIHVYHPLKQLAYPNPCDG---DNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCAC 281
D+ ++H L Q N C+ NGGC +LCL P P + + SP +TCAC
Sbjct: 375 EDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCL--PAPQI--------NPHSP-KFTCAC 423
Query: 282 PNQFYLDPRDNKTCVA 297
P+ L RD ++C+
Sbjct: 424 PDGMLL-ARDMRSCLT 438
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 106/453 (23%), Positives = 163/453 (35%), Gaps = 82/453 (18%)
Query: 840 FQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
F+C SG CI C+ RDCRD S+ +C + C+ C C DL C
Sbjct: 7 FKCHSGECITLDKVCNMARDCRDWSD-EPIKECGTNECLDNNGGC--SHVCNDLKIGYEC 63
Query: 900 PPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQC 959
CP+ FQ + C+ D+C D D S LC N+ +K QC
Sbjct: 64 --------LCPD-GFQLVA-------QRRCEDIDECQD-PDTCSQLCVNLE--GGYKCQC 104
Query: 960 DNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCN 1019
+ G +QL C L H K S+YT +L
Sbjct: 105 EEG-----FQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYT----------SLIP 149
Query: 1020 HVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDE 1079
++ + L E+ ++ + S + C+ + H V + ++ D P
Sbjct: 150 NLRNVVALDTEVASNRIYWSDLSQRMICST-QLDRAHGVSSYDTVISRDIQAP------- 201
Query: 1080 CAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSNKVLTRSTVIYHVRIWSSNV 1139
D L + N + D +GTVS + K + R T
Sbjct: 202 --------------DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT------------ 235
Query: 1140 LVMADVYSTRGSVMENRTVKMEVTKIPLCALDVRSIKLDVAELDGTNRKTLKTA-IQDPR 1198
L + R V++ M T A K+ L+G + +L T IQ P
Sbjct: 236 LFRENGSKPRAIVVDPVHGFMYWTDWGTPA------KIKKGGLNGVDIYSLVTENIQWPN 289
Query: 1199 GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA 1258
GITL G +Y+ L + I I ++G N IL E +A P +L F ++++W
Sbjct: 290 GITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHP--FSLAVFEDKVFWT 346
Query: 1259 DAHLDYIASVD-LDGKHKHIVISGQKVPHVFAL 1290
D + I S + L G +++ P L
Sbjct: 347 DIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 379
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 593 FQCSSGHCIAAYFRCDGDRDCRDLSDE 619
F+C SG CI C+ RDCRD SDE
Sbjct: 7 FKCHSGECITLDKVCNMARDCRDWSDE 33
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 707 CHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLC---------AGAYRQCSESEF- 756
C F+C + CI +C+ DC D SDE C G C++ +
Sbjct: 1 CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIG 60
Query: 757 ---QCKNGKCIPAQWRCDHDEDCTDGSDEMEC-----GGFQCKC 792
C +G + AQ RC+ ++C D + GG++C+C
Sbjct: 61 YECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQC 104
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR
IN AN Extended Conformation
Length = 400
Score = 113 bits (283), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 110/244 (45%), Gaps = 16/244 (6%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSG 1393
GY C C GF + ++C D+DEC CSQ+C NL G Y C C GF L D +
Sbjct: 20 GYECLCPDGFQLVAQ--RRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEEGFQL-DPHTK 75
Query: 1394 VCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRN 1453
CKA + + ++N E+R + + +I + R + ALD + IYW D R
Sbjct: 76 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 135
Query: 1454 IRRSFMLEAQKGQVQAGFGQDLGI-KSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVM 1512
I Q + D I + I +AVDWI NIYWT S G V
Sbjct: 136 I-----CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------VLGTVS 184
Query: 1513 VAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQISN 1572
VA G R++L EN P +I +DP G M+W + G +I+ ++G + N
Sbjct: 185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 244
Query: 1573 RQAP 1576
Q P
Sbjct: 245 IQWP 248
Score = 104 bits (259), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 160/358 (44%), Gaps = 82/358 (22%)
Query: 1009 HKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDD 1068
++C+D C+HV C DL C C +G + LV + CED
Sbjct: 1 NECLDNNGGCSHV--CNDLKIGYEC------------LCPDG----FQLVAQRR--CED- 39
Query: 1069 SDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDD-------IGTVSPS--S 1119
+DEC +T C CV+ GY C+C G+ D +G+++ +
Sbjct: 40 --------IDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT 89
Query: 1120 NKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEVTKIPLCALDV------- 1172
N+ R + ++S + + +V + V NR ++++ +C+ +
Sbjct: 90 NRHEVRKMTLDRSE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS 148
Query: 1173 -------RSIK-----------------------LDVAELDGTNRKTL-KTAIQDPRGIT 1201
R I+ + VA+ G RKTL + PR I
Sbjct: 149 SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 208
Query: 1202 LHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH 1261
+ P G++Y++ W A I K G++G + ++T ++I WPN +TLD + RLYW D+
Sbjct: 209 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSK 266
Query: 1262 LDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKSINRADKFNAREI 1318
L I+S+D++G ++ ++ +K + H F+L +FED ++WTD ++I A++ ++
Sbjct: 267 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 324
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 33 AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHI 92
A I K G++G + ++T ++I WPN +TLD + RLYW D+ L I+S+D++G ++
Sbjct: 225 AKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 282
Query: 93 VISGQK 98
++ +K
Sbjct: 283 ILEDEK 288
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 125/316 (39%), Gaps = 53/316 (16%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D NR Y++D++ + I ST+ +RA+ S++ +++ DI P+
Sbjct: 117 LDTEVASNRIYWSDLSQRMI-----CSTQLDRAH------GVSSYDTVISR--DIQAPDG 163
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDG------------KHKHIVISGQKGWLCDHDNDC 108
L +D+ +YW D+ L ++ D G K + IV+ G++ D
Sbjct: 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT 223
Query: 109 GDGSDEGKECHDKYRTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSDEFNCRDGSD 164
+G + +E N + + Y D + D +G +
Sbjct: 224 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV----NGGN 279
Query: 165 EGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRP 224
D+ R + F+ F+ K + D ++ ++ S D +L P
Sbjct: 280 RKTILEDEKRL--AHPFSLAVFE--DKVFWTDIINEAIFSANRLTGS-DVNLLAENLLSP 334
Query: 225 YDIHVYHPLKQLAYPNPCDG---DNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCAC 281
D+ ++H L Q N C+ NGGC +LCL P P + + SP +TCAC
Sbjct: 335 EDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCL--PAPQI--------NPHSP-KFTCAC 383
Query: 282 PNQFYLDPRDNKTCVA 297
P+ L RD ++C+
Sbjct: 384 PDGMLL-ARDMRSCLT 398
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 101 bits (252), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 87/144 (60%), Gaps = 4/144 (2%)
Query: 1177 LDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT 1235
+ VA+ G RKTL + PR I + P G++Y++ W A I K G++G + ++T
Sbjct: 101 VSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160
Query: 1236 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFE 1294
++I WPN +TLD + RLYW D+ L I+S+D++G ++ ++ +K + H F+L +FE
Sbjct: 161 --ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE 218
Query: 1295 DHIYWTDWNTKSINRADKFNAREI 1318
D ++WTD ++I A++ ++
Sbjct: 219 DKVFWTDIINEAIFSANRLTGSDV 242
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 1404 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 1463
+ ++N E+R + + +I + R + ALD + IYW D R I Q
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMI-----CSTQ 58
Query: 1464 KGQVQAGFGQDLGI-KSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRR 1522
+ D I + I +AVDWI NIYWT S G V VA G R+
Sbjct: 59 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS------VLGTVSVADTKGVKRK 112
Query: 1523 SLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
+L EN P +I +DP G M+W + G +I+ ++G + N Q P
Sbjct: 113 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166
Score = 55.1 bits (131), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 33 AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHI 92
A I K G++G + ++T ++I WPN +TLD + RLYW D+ L I+S+D++G ++
Sbjct: 143 AKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT 200
Query: 93 VISGQK 98
++ +K
Sbjct: 201 ILEDEK 206
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 15/87 (17%)
Query: 213 DYRVLRNTTHRPYDIHVYHPLKQLAYPNPCDG---DNGGCSHLCLLSPVPGVDRAPDMYA 269
D +L P D+ ++H L Q N C+ NGGC +LCL P P +
Sbjct: 241 DVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCL--PAPQI-------- 290
Query: 270 DARSPVSYTCACPNQFYLDPRDNKTCV 296
+ SP +TCACP+ L RD ++C+
Sbjct: 291 NPHSP-KFTCACPDGMLL-ARDMRSCL 315
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 1206 IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI 1265
I Y++F++ + + K+ +D S +T ++ + ++ AL + + R+YW+D I
Sbjct: 1 IAYLFFTN---RHEVRKMTLDRSEYTSLIPNLRNVV---ALDTEVASNRIYWSDLSQRMI 54
Query: 1266 ASVDLDGKH-----KHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 1311
S LD H ++ + P A+ +IYWTD +++ AD
Sbjct: 55 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 87.4 bits (215), Expect = 5e-17, Method: Composition-based stats.
Identities = 56/169 (33%), Positives = 89/169 (52%), Gaps = 6/169 (3%)
Query: 1176 KLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRI 1233
+++VA++DGT R+ L T + +PRGI P G +Y++ WN I MDG+N RI
Sbjct: 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRI 160
Query: 1234 LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF 1293
L +D++ PN LT D F+ +L W DA ++ + V+ G + P FA+T +
Sbjct: 161 LA-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP--FAVTSY 217
Query: 1294 EDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQG 1342
++Y+TDW T S+ D ++E+ H + G + L C QG
Sbjct: 218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQCPQG 266
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 1432 IEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWI 1491
I L D VD+++YW D + +I R+ + G+ QDLG IA+D +
Sbjct: 38 IIGLAFDCVDKVVYWTDISEPSIGRASL---HGGEPTTIIRQDLGSPE-----GIALDHL 89
Query: 1492 AHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAE-TG 1550
I+WT S ++ VA DG RR L L +P I DP G ++W +
Sbjct: 90 GRTIFWTDSQLD------RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR 143
Query: 1551 ASPRIESAWMDGSHRSATQISNRQAP 1576
+P+IE++ MDG++R N P
Sbjct: 144 DNPKIETSHMDGTNRRILAQDNLGLP 169
Score = 50.8 bits (120), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 1220 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI 1279
IG+ + G T I+ D+ P + LD+ ++W D+ LD I +DG + ++
Sbjct: 60 IGRASLHGGEPTTII--RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117
Query: 1280 -SGQKVPHVFALTLFEDHIYWTDWN 1303
+G P ++YWTDWN
Sbjct: 118 DTGLVNPRGIVTDPVRGNLYWTDWN 142
Score = 38.1 bits (87), Expect = 0.035, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 28 TEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG 87
T+ IG+ + G T I+ D+ P + LD+ ++W D+ LD I +DG
Sbjct: 53 TDISEPSIGRASLHGGEPTTII--RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110
Query: 88 KHKHIV 93
+ ++
Sbjct: 111 TQRRVL 116
Score = 37.4 bits (85), Expect = 0.071, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 40 MDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA 75
MDG+N RIL +D++ PN LT D F+ +L W DA
Sbjct: 153 MDGTN-RRILA-QDNLGLPNGLTFDAFSSQLCWVDA 186
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 46/73 (63%)
Query: 547 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFR 606
+ CS++EF+C +GKCI Q+ CD D DC DGSDE C C +FQC+S CI +
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 607 CDGDRDCRDLSDE 619
CD D DC D SDE
Sbjct: 61 CDNDPDCEDGSDE 73
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 298 NCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSA 357
C+Q + C HD KCI + CD +RDC DGSDE SCP C SFQC++ C P
Sbjct: 2 TCSQAEFRC--HDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQL 58
Query: 358 SICDGVDDCRDGSDE 372
CD DC DGSDE
Sbjct: 59 WACDNDPDCEDGSDE 73
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 47/84 (55%), Gaps = 16/84 (19%)
Query: 749 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQC-----KCVTMTRIVQMEV 803
+ CS++EF+C +GKCI Q+ CD D DC DGSDE C C +C + T I Q+
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQL-- 58
Query: 804 MKWNAAASNWRCDHDEDCTDGSDE 827
W CD+D DC DGSDE
Sbjct: 59 ---------WACDNDPDCEDGSDE 73
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 711 TDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRC 770
+F+C + +CI ++++CD + DC D SDEA + C + FQC + CIP W C
Sbjct: 6 AEFRCHDGKCISRQFVCDSDRDCLDGSDEA----SCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 771 DHDEDCTDGSDE 782
D+D DC DGSDE
Sbjct: 62 DNDPDCEDGSDE 73
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 339 RQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCD-LPCPDLEFKCASNGRCILNSW 397
+ C F+C +G C +CD DC DGSDE C L C F+C S+ CI W
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS-TCIPQLW 59
Query: 398 KCDGEPDCKDGSDEDPAMCH 417
CD +PDC+DGSDE P C
Sbjct: 60 ACDNDPDCEDGSDEWPQRCR 79
Score = 53.5 bits (127), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVE 647
C F+C G CI+ F CD DRDC D SDE +CP C FQC S+ C+
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT-----CGPASFQCNSS-TCIP 56
Query: 648 QSELCDGTDDCGDNSDETSSLC 669
Q CD DC D SDE C
Sbjct: 57 QLWACDNDPDCEDGSDEWPQRC 78
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFA 182
+TCS EF C + KCI + + CD + DC D SDE +C TC F
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC------------PVLTCGPASFQ 48
Query: 183 CQNFKCIRKTYHCDGEDDCGDRSDEF 208
C + CI + + CD + DC D SDE+
Sbjct: 49 CNSSTCIPQLWACDNDPDCEDGSDEW 74
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 867 NGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQS 926
F+C G CI+ F CD DRDC D SDE +CP C FQC S+ C+ Q
Sbjct: 5 QAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT-----CGPASFQCNSS-TCIPQL 58
Query: 927 ELCDGTDDCGDNSDETSSLC 946
CD DC D SDE C
Sbjct: 59 WACDNDPDCEDGSDEWPQRC 78
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELN---------GTFQCSSGHCIAAYFRCD 885
C F+C G CI+ F CD DRDC D S+ +FQC+S CI + CD
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACD 62
Query: 886 GDRDCRDLSDE 896
D DC D SDE
Sbjct: 63 NDPDCEDGSDE 73
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSD 738
KCI + CD DC DGSDE C + FQC ++ CIP+ W CD + DC D SD
Sbjct: 14 KCISRQFVCDSDRDCLDGSDEASCPVLTCGPAS-FQCNSSTCIPQLWACDNDPDCEDGSD 72
Query: 739 EAEDLCAG 746
E C G
Sbjct: 73 EWPQRCRG 80
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 461 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIP 520
+ C++ RC + +CI + CD DC DGSDE C + FQC ++ CIP
Sbjct: 1 KTCSQAEFRC---HDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPAS-FQCNSSTCIP 56
Query: 521 KRWMCDFENDCGDQSDEAEDLCAG 544
+ W CD + DC D SDE C G
Sbjct: 57 QLWACDNDPDCEDGSDEWPQRCRG 80
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 815 CDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
CD D DC DGSDE C C +FQC+S CI + CD D DC D S+
Sbjct: 22 CDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 72
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNK 1061
+++ C + KCI R +C+ DC D SDE C TC + F+CN+ CI C+
Sbjct: 6 AEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV--LTCGPASFQCNSSTCIPQLWACDN 63
Query: 1062 ESDCEDDSDE-PLHC 1075
+ DCED SDE P C
Sbjct: 64 DPDCEDGSDEWPQRC 78
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKL 438
C EF+C +G+CI + CD + DC DGSDE A C C F C + CIP+L
Sbjct: 3 CSQAEFRC-HDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGP-ASFQCNSSTCIPQL 58
Query: 439 WVC 441
W C
Sbjct: 59 WAC 61
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 89 HKHIVISGQKGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGED 148
H IS Q ++CD D DC DGSDE TC F C + CI + + CD +
Sbjct: 11 HDGKCISRQ--FVCDSDRDCLDGSDEASC---PVLTCGPASFQCNSSTCIPQLWACDNDP 65
Query: 149 DCGDRSDEF 157
DC D SDE+
Sbjct: 66 DCEDGSDEW 74
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 1096
TCS ++FRC++GKCI VC+ + DC D SDE C V C C+ L
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQL 58
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 953 SLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCI 1012
S +++C +G+CI+ +CD +C DGSDE + + T + + C++ CI
Sbjct: 4 SQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGP--------ASFQCNSSTCI 55
Query: 1013 DRAALCNHVDDCGDLSDE 1030
+ C++ DC D SDE
Sbjct: 56 PQLWACDNDPDCEDGSDE 73
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 174 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 210
+TCS EF C + KCI + + CD + DC D SDE +C
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSE-SEFQCKNGKCIPAQWRCD 569
F C + RCIP W CD ++DCGD+SDE+ + AY C ++F C NG+CI WRCD
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLTQFTCNNGRCININWRCD 66
Query: 570 HDEDCTDGSDEMEC 583
+D DC D SDE C
Sbjct: 67 NDNDCGDNSDEAGC 80
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSE-SEFQCKNGKCIPAQWRCD 771
F C + RCIP W CD ++DCGD+SDE+ + AY C ++F C NG+CI WRCD
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLTQFTCNNGRCININWRCD 66
Query: 772 HDEDCTDGSDEMEC 785
+D DC D SDE C
Sbjct: 67 NDNDCGDNSDEAGC 80
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 545 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE-MECGGFQCKNGT-FQCSSGHCIA 602
+ R C ++F C +G+CIP W CD D+DC D SDE C C T F C++G CI
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Query: 603 AYFRCDGDRDCRDLSDEMNC 622
+RCD D DC D SDE C
Sbjct: 61 INWRCDNDNDCGDNSDEAGC 80
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 50/90 (55%), Gaps = 12/90 (13%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTC-SSEEF 181
RTC +F+C + +CI ++ CD +DDCGDR SDE C Y TC +F
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDR---------SDESASC--AYPTCFPLTQF 51
Query: 182 ACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
C N +CI + CD ++DCGD SDE CS
Sbjct: 52 TCNNGRCININWRCDNDNDCGDNSDEAGCS 81
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 747 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKW 806
+ R C ++F C +G+CIP W CD D+DC D SDE C T + Q
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESA----SCAYPTCFPLTQFTCNNG 56
Query: 807 NAAASNWRCDHDEDCTDGSDETEC 830
NWRCD+D DC D SDE C
Sbjct: 57 RCININWRCDNDNDCGDNSDEAGC 80
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 906 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCI 965
R CP +F CAS C+ S CD DDCGD SDE++S C+ C L ++ C+NGRCI
Sbjct: 2 ARTCPPNQFSCASGR-CIPISWTCDLDDDCGDRSDESAS-CAYPTCFPLTQFTCNNGRCI 59
Query: 966 ASYQLCDGVDNCGDGSDE 983
CD ++CGD SDE
Sbjct: 60 NINWRCDNDNDCGDNSDE 77
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 477 RCIPKWLFCDGKDDCRDGSDELPQNC-PKCHETTDFQCKNNRCIPKRWMCDFENDCGDQS 535
RCIP CD DDC D SDE P C T F C N RCI W CD +NDCGD S
Sbjct: 16 RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNS 75
Query: 536 DEA 538
DEA
Sbjct: 76 DEA 78
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNC-PKCHETTDFQCKNNRCIPKRWMCDFENDCGDQS 737
+CIP CD DDC D SDE P C T F C N RCI W CD +NDCGD S
Sbjct: 16 RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNS 75
Query: 738 DEA 740
DEA
Sbjct: 76 DEA 78
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 100 WLCDHDNDCGDGSDEGKECHDKYRTC-SSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFN 158
W CD D+DCGD SDE C Y TC +F C N +CI + CD ++DCGD SDE
Sbjct: 22 WTCDLDDDCGDRSDESASC--AYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAG 79
Query: 159 C 159
C
Sbjct: 80 C 80
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 338 ARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEK-HCDLPC--PDLEFKCASNGRCIL 394
AR C F C +G C P + CD DDC D SDE C P P +F C +NGRCI
Sbjct: 2 ARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTC-NNGRCIN 60
Query: 395 NSWKCDGEPDCKDGSDE 411
+W+CD + DC D SDE
Sbjct: 61 INWRCDNDNDCGDNSDE 77
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNK 1061
+Q++C++ +CI + C+ DDCGD SDE + +QF CNNG+CI+ + C+
Sbjct: 8 NQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDN 67
Query: 1062 ESDCEDDSDE 1071
++DC D+SDE
Sbjct: 68 DNDCGDNSDE 77
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 955 HKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDR 1014
+++ C +GRCI CD D+CGD SDE + C +Q+TC+N +CI+
Sbjct: 8 NQFSCASGRCIPISWTCDLDDDCGDRSDE------SASCAYPTCFPLTQFTCNNGRCINI 61
Query: 1015 AALCNHVDDCGDLSDELGC 1033
C++ +DCGD SDE GC
Sbjct: 62 NWRCDNDNDCGDNSDEAGC 80
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKL 438
CP +F CAS GRCI SW CD + DC D SDE A C C T+F C NG CI
Sbjct: 5 CPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDES-ASCAYPTCFPLTQFTCNNGRCININ 62
Query: 439 WVC 441
W C
Sbjct: 63 WRC 65
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGT-----------FQCSSGHCIAAYFR 883
C F C+SG CI + CD D DC D S+ + + F C++G CI +R
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWR 64
Query: 884 CDGDRDCRDLSDEMNC 899
CD D DC D SDE C
Sbjct: 65 CDNDNDCGDNSDEAGC 80
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQC-RAGSFQCDNGNCTPSA 357
C Q C +CIP W CD + DCGD SDE SC C F C+NG C
Sbjct: 5 CPPNQFSCASG--RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININ 62
Query: 358 SICDGVDDCRDGSDEKHC 375
CD +DC D SDE C
Sbjct: 63 WRCDNDNDCGDNSDEAGC 80
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH-KCVD 1094
TC +QF C +G+CI C+ + DC D SDE C C + C + +C++
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE--MECGG---FQ-----CKNGTFQCSSG 598
C + FQC + CIP W CD+D DC DGSDE C G FQ C F C SG
Sbjct: 7 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG 66
Query: 599 HCIAAYFRCDGDRDCRDLSDEMNC 622
CI + +RCDG DC+D SDE NC
Sbjct: 67 ECIHSSWRCDGGPDCKDKSDEENC 90
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAY------RQCSESEFQCKNGKCIPA 564
FQC ++ CIP+ W CD + DC D SDE C G Y CS EF C +G+CI +
Sbjct: 12 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 71
Query: 565 QWRCDHDEDCTDGSDEMECG 584
WRCD DC D SDE C
Sbjct: 72 SWRCDGGPDCKDKSDEENCA 91
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAY------RQCSESEFQCKNGKCIPA 766
FQC ++ CIP+ W CD + DC D SDE C G Y CS EF C +G+CI +
Sbjct: 12 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHS 71
Query: 767 QWRCDHDEDCTDGSDEMECG 786
WRCD DC D SDE C
Sbjct: 72 SWRCDGGPDCKDKSDEENCA 91
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 337 PARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDE--KHC---------DLPCPDLEFK 385
P C SFQC++ C P CD DC DGSDE + C PC EF
Sbjct: 3 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 62
Query: 386 CASNGRCILNSWKCDGEPDCKDGSDED 412
C S G CI +SW+CDG PDCKD SDE+
Sbjct: 63 CLS-GECIHSSWRCDGGPDCKDKSDEE 88
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 14/94 (14%)
Query: 124 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKY------RTCS 177
TC F C + CI + + CD + DC D SDE+ + C Y CS
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP--------QRCRGLYVFQGDSSPCS 57
Query: 178 SEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
+ EF C + +CI ++ CDG DC D+SDE NC+
Sbjct: 58 AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 91
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE--MECGG---FQCKCVTMTRIVQMEVMK 805
C + FQC + CIP W CD+D DC DGSDE C G FQ + + +
Sbjct: 7 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD-SSPCSAFEFHCLS 65
Query: 806 WNAAASNWRCDHDEDCTDGSDETECG 831
S+WRCD DC D SDE C
Sbjct: 66 GECIHSSWRCDGGPDCKDKSDEENCA 91
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 100 WLCDHDNDCGDGSDE-GKECHDKY------RTCSSEEFACQNFKCIRKTYHCDGEDDCGD 152
W CD+D DC DGSDE + C Y CS+ EF C + +CI ++ CDG DC D
Sbjct: 24 WACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKD 83
Query: 153 RSDEFNC 159
+SDE NC
Sbjct: 84 KSDEENC 90
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 833 FQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE-----------LNG--------TFQCS 873
C +FQC+S CI + CD D DC D S+ G F C
Sbjct: 5 LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL 64
Query: 874 SGHCIAAYFRCDGDRDCRDLSDEMNC 899
SG CI + +RCDG DC+D SDE NC
Sbjct: 65 SGECIHSSWRCDGGPDCKDKSDEENC 90
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 296 VANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE-PMSC--------PARQCRAGSF 346
V C C + CIP W CD + DC DGSDE P C + C A F
Sbjct: 4 VLTCGPASFQC--NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEF 61
Query: 347 QCDNGNCTPSASICDGVDDCRDGSDEKHCDL 377
C +G C S+ CDG DC+D SDE++C +
Sbjct: 62 HCLSGECIHSSWRCDGGPDCKDKSDEENCAV 92
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 586 FQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPG-------GRFCPEYKFQ 638
C +FQC+S CI + CD D DC D SDE P R G C ++F
Sbjct: 5 LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW--PQRCRGLYVFQGDSSPCSAFEFH 62
Query: 639 CASTHLCVEQSELCDGTDDCGDNSDE 664
C S C+ S CDG DC D SDE
Sbjct: 63 CLSGE-CIHSSWRCDGGPDCKDKSDE 87
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 478 CIPKWLFCDGKDDCRDGSDELPQNCPKCH---------ETTDFQCKNNRCIPKRWMCDFE 528
CIP+ CD DC DGSDE PQ C + +F C + CI W CD
Sbjct: 19 CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGG 78
Query: 529 NDCGDQSDE 537
DC D+SDE
Sbjct: 79 PDCKDKSDE 87
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 680 CIPKWLFCDGKDDCRDGSDELPQNCPKCH---------ETTDFQCKNNRCIPKRWMCDFE 730
CIP+ CD DC DGSDE PQ C + +F C + CI W CD
Sbjct: 19 CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGG 78
Query: 731 NDCGDQSDE 739
DC D+SDE
Sbjct: 79 PDCKDKSDE 87
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 377 LPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCH--------NRPCDKDTEFA 428
L C F+C S+ CI W CD +PDC+DGSDE P C + PC EF
Sbjct: 5 LTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSA-FEFH 62
Query: 429 CRNGHCIPKLWVC 441
C +G CI W C
Sbjct: 63 CLSGECIHSSWRC 75
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM-------NCTSLHKYQCDN 961
C FQC S+ C+ Q CD DC D SDE C + + S ++ C +
Sbjct: 7 CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 65
Query: 962 GRCIASYQLCDGVDNCGDGSDENNLTLCT 990
G CI S CDG +C D SDE N + T
Sbjct: 66 GECIHSSWRCDGGPDCKDKSDEENCAVAT 94
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELG--------CHKENSTCSSSQFRCNNGKCI 1053
+ + C++ CI + C++ DC D SDE ++S CS+ +F C +G+CI
Sbjct: 10 ASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECI 69
Query: 1054 DYHLVCNKESDCEDDSDE 1071
C+ DC+D SDE
Sbjct: 70 HSSWRCDGGPDCKDKSDE 87
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 956 KYQCDNGRCIASYQLCDGVDNCGDGSDE---NNLTLCTVHTRVKPCELYSQYTCSNHKCI 1012
+QC++ CI CD +C DGSDE L PC + ++ C + +CI
Sbjct: 11 SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAF-EFHCLSGECI 69
Query: 1013 DRAALCNHVDDCGDLSDELGC 1033
+ C+ DC D SDE C
Sbjct: 70 HSSWRCDGGPDCKDKSDEENC 90
Score = 33.9 bits (76), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
TC + F+CN+ CI C+ + DCED SDE
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 38
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDH 772
FQC N + I + CD NDCGDQSDE LC A C F CK+G CIP+Q++C+
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDE---LCCKA---CQGKGFHCKSGVCIPSQYQCNG 262
Query: 773 DEDCTDGSDEMECGGFQCKCVTMTRIVQMEV 803
+ DC G DE+ C GF T I+ ++
Sbjct: 263 EVDCITGEDEVGCAGFASVAQEETEILTADM 293
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDH 570
FQC N + I + CD NDCGDQSDE LC A C F CK+G CIP+Q++C+
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDE---LCCKA---CQGKGFHCKSGVCIPSQYQCNG 262
Query: 571 DEDCTDGSDEMECGGF 586
+ DC G DE+ C GF
Sbjct: 263 EVDCITGEDEVGCAGF 278
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 554 FQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDC 613
FQC NGK I CD DC D SDE+ C C+ F C SG CI + ++C+G+ DC
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCCKA--CQGKGFHCKSGVCIPSQYQCNGEVDC 266
Query: 614 RDLSDEMNC 622
DE+ C
Sbjct: 267 ITGEDEVGC 275
Score = 50.8 bits (120), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 14/92 (15%)
Query: 130 FACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCI 189
F C N K I + CDG +DCGD+SDE C + C + F C++ CI
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCC--------------KACQGKGFHCKSGVCI 254
Query: 190 RKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTT 221
Y C+GE DC DE C+ V + T
Sbjct: 255 PSQYQCNGEVDCITGEDEVGCAGFASVAQEET 286
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 346 FQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWKCDGEPDC 405
FQC NG CDG++DC D SDE C C F C S G CI + ++C+GE DC
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCCK-ACQGKGFHCKS-GVCIPSQYQCNGEVDC 266
Query: 406 KDGSDE 411
G DE
Sbjct: 267 ITGEDE 272
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 1004 YTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKES 1063
+ C N K I + C+ ++DCGD SDEL C C F C +G CI CN E
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCC----KACQGKGFHCKSGVCIPSQYQCNGEV 264
Query: 1064 DCEDDSDEPLHCNVDECAKVET 1085
DC DE A+ ET
Sbjct: 265 DCITGEDEVGCAGFASVAQEET 286
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 312 KCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSD 371
K I CDG DCGD SDE + C A C+ F C +G C PS C+G DC G D
Sbjct: 215 KYISQMKACDGINDCGDQSDE-LCCKA--CQGKGFHCKSGVCIPSQYQCNGEVDCITGED 271
Query: 372 EKHC 375
E C
Sbjct: 272 EVGC 275
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 840 FQCSSGHCIAAYFRCDGDRDCRDLS-EL------NGTFQCSSGHCIAAYFRCDGDRDCRD 892
FQC +G I+ CDG DC D S EL F C SG CI + ++C+G+ DC
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCIT 268
Query: 893 LSDEMNC 899
DE+ C
Sbjct: 269 GEDEVGC 275
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 756 FQCKNGKCIPAQWRCDHDEDCTDGSDEMECG-----GFQCKCVTMTRIVQMEVMKWNAAA 810
FQC NGK I CD DC D SDE+ C GF CK
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSGV-------------CIP 255
Query: 811 SNWRCDHDEDCTDGSDETECGGF 833
S ++C+ + DC G DE C GF
Sbjct: 256 SQYQCNGEVDCITGEDEVGCAGF 278
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSD 738
K I + CDG +DC D SDEL C K + F CK+ CIP ++ C+ E DC D
Sbjct: 215 KYISQMKACDGINDCGDQSDEL---CCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGED 271
Query: 739 EAEDLCAG 746
E CAG
Sbjct: 272 EVG--CAG 277
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 957 YQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAA 1016
+QC NG+ I+ + CDG+++CGD SDE LC K C+ + C + CI
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDE----LC-----CKACQ-GKGFHCKSGVCIPSQY 258
Query: 1017 LCNHVDDCGDLSDELGC 1033
CN DC DE+GC
Sbjct: 259 QCNGEVDCITGEDEVGC 275
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 18/125 (14%)
Query: 826 DETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDL--------SELNGTFQCSSGHC 877
+ TEC C+ + S C R G +D D+ S ++ FQC +G
Sbjct: 159 NSTECLHVHCRG--LETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKY 216
Query: 878 IAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGD 937
I+ CDG DC D SDE+ C + C F C S +C+ C+G DC
Sbjct: 217 ISQMKACDGINDCGDQSDELCC-------KACQGKGFHCKSG-VCIPSQYQCNGEVDCIT 268
Query: 938 NSDET 942
DE
Sbjct: 269 GEDEV 273
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 102 CDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRD 161
CD NDCGD SDE C + C + F C++ CI Y C+GE DC DE C
Sbjct: 223 CDGINDCGDQSDE--LC---CKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAG 277
Query: 162 GSDEGKE 168
+ +E
Sbjct: 278 FASVAQE 284
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 593 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELC 652
FQC +G I+ CDG DC D SDE+ C + C F C S +C+ C
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCC-------KACQGKGFHCKSG-VCIPSQYQC 260
Query: 653 DGTDDCGDNSDET 665
+G DC DE
Sbjct: 261 NGEVDCITGEDEV 273
Score = 37.4 bits (85), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 791 KCVTMTRIVQMEVMKWNAAASNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAA 850
+CV I QM+ CD DC D SDE C C+ F C SG CI +
Sbjct: 210 QCVNGKYISQMKA-----------CDGINDCGDQSDELCCKA--CQGKGFHCKSGVCIPS 256
Query: 851 YFRCDGDRDC 860
++C+G+ DC
Sbjct: 257 QYQCNGEVDC 266
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 373 KHCDLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNG 432
+ D P D F+C NG+ I CDG DC D SDE +C + C + F C++G
Sbjct: 199 QKADSPMDDF-FQCV-NGKYISQMKACDGINDCGDQSDE---LC-CKAC-QGKGFHCKSG 251
Query: 433 HCIPKLWVC 441
CIP + C
Sbjct: 252 VCIPSQYQC 260
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 548 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEME--CGGFQCKNGTFQCSS--GHCIAA 603
+C +EFQC++GKCI +W CD +C DGSDE + C CK+G F C CI
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 66
Query: 604 YFRCDGDRDCRDLSDEMNC 622
++RCDG DC + SDE C
Sbjct: 67 FWRCDGQVDCDNGSDEQGC 85
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 507 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQC--KNGKCIPA 564
E +FQC++ +CI +W+CD +C D SDE+++ C C +F C + +CIP
Sbjct: 9 ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT--CKSGDFSCGGRVNRCIPQ 66
Query: 565 QWRCDHDEDCTDGSDEMEC 583
WRCD DC +GSDE C
Sbjct: 67 FWRCDGQVDCDNGSDEQGC 85
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 709 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQC--KNGKCIPA 766
E +FQC++ +CI +W+CD +C D SDE+++ C C +F C + +CIP
Sbjct: 9 ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVT--CKSGDFSCGGRVNRCIPQ 66
Query: 767 QWRCDHDEDCTDGSDEMEC 785
WRCD DC +GSDE C
Sbjct: 67 FWRCDGQVDCDNGSDEQGC 85
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 340 QCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKH---CDLPCPDLEFKCASN-GRCILN 395
+C FQC +G C +CDG +C+DGSDE + C +F C RCI
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQ 66
Query: 396 SWKCDGEPDCKDGSDE 411
W+CDG+ DC +GSDE
Sbjct: 67 FWRCDGQVDCDNGSDE 82
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPM-SCPARQCRAGSFQCDN--GNCTP 355
C + + C D KCI + W CDG +C DGSDE +C + C++G F C C P
Sbjct: 8 CERNEFQC--QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 65
Query: 356 SASICDGVDDCRDGSDEKHC 375
CDG DC +GSDE+ C
Sbjct: 66 QFWRCDGQVDCDNGSDEQGC 85
Score = 51.2 bits (121), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 426 EFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFC 485
EF C++G CI WVC E C C G C G+ N RCIP++ C
Sbjct: 12 EFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVN-RCIPQFWRC 70
Query: 486 DGKDDCRDGSDE 497
DG+ DC +GSDE
Sbjct: 71 DGQVDCDNGSDE 82
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 750 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAA 809
+C +EFQC++GKCI +W CD +C DGSDE + C + V +
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNR--CI 64
Query: 810 ASNWRCDHDEDCTDGSDETEC 830
WRCD DC +GSDE C
Sbjct: 65 PQFWRCDGQVDCDNGSDEQGC 85
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFAC--RNGHCIP 436
C EF+C +G+CI W CDG +C+DGSDE C + C K +F+C R CIP
Sbjct: 8 CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTC-KSGDFSCGGRVNRCIP 65
Query: 437 KLWVC 441
+ W C
Sbjct: 66 QFWRC 70
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 629 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTS--------LHKC 680
G C +FQC C+ +CDG+ +C D SDE+ C ++ C S +++C
Sbjct: 5 GDRCERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRC 63
Query: 681 IPKWLFCDGKDDCRDGSDE 699
IP++ CDG+ DC +GSDE
Sbjct: 64 IPQFWRCDGQVDCDNGSDE 82
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 125 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQ 184
C EF CQ+ KCI + CDG + C+DGSDE +E TC S +F+C
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAE---------CQDGSDESQETCLSV-TCKSGDFSCG 57
Query: 185 NF--KCIRKTYHCDGEDDCGDRSDEFNC 210
+CI + + CDG+ DC + SDE C
Sbjct: 58 GRVNRCIPQFWRCDGQVDCDNGSDEQGC 85
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 13/81 (16%)
Query: 832 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE-----------LNGTFQCSS--GHCI 878
G +C+ FQC G CI+ + CDG +C+D S+ +G F C CI
Sbjct: 5 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCI 64
Query: 879 AAYFRCDGDRDCRDLSDEMNC 899
++RCDG DC + SDE C
Sbjct: 65 PQFWRCDGQVDCDNGSDEQGC 85
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 292 NKTCVA-NCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
+TC++ C G CGG +CIP FW+CDG+ DC +GSDE
Sbjct: 41 QETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 82
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 906 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDN--GR 963
G C +FQC C+ +CDG+ +C D SDE+ C ++ C S + C R
Sbjct: 5 GDRCERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKS-GDFSCGGRVNR 62
Query: 964 CIASYQLCDGVDNCGDGSDEN 984
CI + CDG +C +GSDE
Sbjct: 63 CIPQFWRCDGQVDCDNGSDEQ 83
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 955 HKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSN--HKCI 1012
+++QC +G+CI+ +CDG C DGSDE+ T +V + ++C ++CI
Sbjct: 11 NEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCK------SGDFSCGGRVNRCI 64
Query: 1013 DRAALCNHVDDCGDLSDELGC 1033
+ C+ DC + SDE GC
Sbjct: 65 PQFWRCDGQVDCDNGSDEQGC 85
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 585 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAS-TH 643
G +C+ FQC G CI+ + CDG +C+D SDE C F C +
Sbjct: 5 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE---SQETCLSVTCKSGDFSCGGRVN 61
Query: 644 LCVEQSELCDGTDDCGDNSDE 664
C+ Q CDG DC + SDE
Sbjct: 62 RCIPQFWRCDGQVDCDNGSDE 82
Score = 40.4 bits (93), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 100 WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEF 157
W+CD +C DGSDE +E TC S +F+C +CI + + CDG+ DC + SDE
Sbjct: 25 WVCDGSAECQDGSDESQETCLSV-TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ 83
Query: 158 NC 159
C
Sbjct: 84 GC 85
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1040 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP 1072
C ++F+C +GKCI Y VC+ ++C+D SDE
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDES 40
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNN--GKCIDYHLVC 1059
+++ C + KCI +C+ +C D SDE + TC S F C +CI C
Sbjct: 11 NEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRC 70
Query: 1060 NKESDCEDDSDE 1071
+ + DC++ SDE
Sbjct: 71 DGQVDCDNGSDE 82
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 543 AGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583
+G ++C + +FQC+N +CIP+ WRCD D+DC D SDE +C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 745 AGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785
+G ++C + +FQC+N +CIP+ WRCD D+DC D SDE +C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 507 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDE 537
E FQC+N RCIP W CD ++DC D SDE
Sbjct: 9 EKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 709 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDE 739
E FQC+N RCIP W CD ++DC D SDE
Sbjct: 9 EKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 587 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCP 623
+C+ FQC + CI + +RCD D DC D SDE +CP
Sbjct: 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 22/39 (56%)
Query: 337 PARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
PA++C FQC N C PS CD DDC D SDE C
Sbjct: 4 PAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 37.4 bits (85), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 174 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSR 212
+ C ++F C+N +CI + CD +DDC D SDE +C +
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 37.0 bits (84), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
+ C ++F C+N +CI + CD +DDC D SDE +C
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNCP 900
FQC + CI + +RCD D DC D SDE +CP
Sbjct: 13 FQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 834 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
+C+ FQC + CI + +RCD D DC D S+
Sbjct: 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSD 38
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 383 EFKCASNGRCILNSWKCDGEPDCKDGSDED 412
+F+C N RCI + W+CD + DC D SDED
Sbjct: 12 QFQC-RNERCIPSVWRCDEDDDCLDHSDED 40
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 956 KYQCDNGRCIASYQLCDGVDNCGDGSDENN 985
++QC N RCI S CD D+C D SDE++
Sbjct: 12 QFQCRNERCIPSVWRCDEDDDCLDHSDEDD 41
Score = 30.4 bits (67), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 296 VANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C + Q C +++CIP W+CD + DC D SDE
Sbjct: 5 AKECEKDQFQC--RNERCIPSVWRCDEDDDCLDHSDE 39
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 1043 SQFRCNNGKCIDYHLVCNKESDCEDDSDEPL-HCNVDECAKVETNQCGHKCVDTLTGYYC 1101
++F+C++G+CI VCN DC D SDEP+ C +EC C H C D GY C
Sbjct: 10 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD-NNGGCSHVCNDLKIGYEC 68
Query: 1102 ECNTGY 1107
C G+
Sbjct: 69 LCPDGF 74
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 19/34 (55%)
Query: 863 LSELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDE 896
L E F+C SG CI C+ RDCRD SDE
Sbjct: 5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 38
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 593 FQCSSGHCIAAYFRCDGDRDCRDLSDE 619
F+C SG CI C+ RDCRD SDE
Sbjct: 12 FKCHSGECITLDKVCNMARDCRDWSDE 38
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 383 EFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCH 417
EF CA N RCI WKCDG+ DC D SDE PA+CH
Sbjct: 10 EFACA-NSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 503 PKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLC 542
P+C + +F C N+RCI +RW CD +NDC D SDEA LC
Sbjct: 4 PQC-QPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALC 42
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 705 PKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLC 744
P+C + +F C N+RCI +RW CD +NDC D SDEA LC
Sbjct: 4 PQC-QPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALC 42
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 548 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE 580
QC EF C N +CI +W+CD D DC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 750 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE 782
QC EF C N +CI +W+CD D DC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 125 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 156
C EFAC N +CI++ + CDG++DC D SDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 176 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 207
C EFAC N +CI++ + CDG++DC D SDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 587 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDE 619
QC+ G F C++ CI ++CDGD DC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 834 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
QC+ G F C++ CI ++CDGD DC D S+
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSD 36
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDE 896
G F C++ CI ++CDGD DC D SDE
Sbjct: 9 GEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLC 669
C +F CA++ C+++ CDG +DC DNSDE +LC
Sbjct: 6 CQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPALC 42
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLC 946
C +F CA++ C+++ CDG +DC DNSDE +LC
Sbjct: 6 CQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPALC 42
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 340 QCRAGSFQCDNGNCTPSASICDGVDDCRDGSDE 372
QC+ G F C N C CDG +DC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C G+ C + +CI WKCDG+ DC D SDE
Sbjct: 6 CQPGEFACA--NSRCIQERWKCDGDNDCLDNSDE 37
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 508 TTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCA 543
+T F+C + RCIP+ W CD +NDCGD SDE C
Sbjct: 7 STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 710 TTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCA 745
+T F+C + RCIP+ W CD +NDCGD SDE C
Sbjct: 7 STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 547 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEM 581
CS ++F+C +G+CIP W CD D DC D SDE
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 749 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEM 783
CS ++F+C +G+CIP W CD D DC D SDE
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNR 419
C +FKC S GRCI W CDG+ DC D SDE A C N+
Sbjct: 5 CSSTQFKCNS-GRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
+CSS+QF+CN+G+CI H C+ ++DC D SDE
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 584 GGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEM 620
G C + F+C+SG CI ++ CDGD DC D SDE
Sbjct: 1 GSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 156
+CSS +F C + +CI + + CDG++DCGD SDE
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 174 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 207
+CSS +F C + +CI + + CDG++DCGD SDE
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEM 897
F+C+SG CI ++ CDGD DC D SDE
Sbjct: 10 FKCNSGRCIPEHWTCDGDNDCGDYSDET 37
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 831 GGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
G C + F+C+SG CI ++ CDGD DC D S+
Sbjct: 1 GSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSD 35
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 628 GGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM 672
G C +F+C S C+ + CDG +DCGD SDET + C+N
Sbjct: 1 GSHSCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 905 GGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM 949
G C +F+C S C+ + CDG +DCGD SDET + C+N
Sbjct: 1 GSHSCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 35.0 bits (79), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 338 ARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKH 374
+ C + F+C++G C P CDG +DC D SDE H
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 312 KCIPWFWKCDGERDCGDGSDE 332
+CIP W CDG+ DCGD SDE
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDE 36
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 956 KYQCDNGRCIASYQLCDGVDNCGDGSDE 983
+++C++GRCI + CDG ++CGD SDE
Sbjct: 9 QFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 477 RCIPKWLFCDGKDDCRDGSDELPQNC 502
RCIP+ CDG +DC D SDE NC
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDETHANC 41
Score = 30.4 bits (67), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNC 704
+CIP+ CDG +DC D SDE NC
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDETHANC 41
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 297 ANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C G CGG +CIP FW+CDG+ DC +GSDE
Sbjct: 5 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 549 CSESEFQC--KNGKCIPAQWRCDHDEDCTDGSDEMEC 583
C +F C + +CIP WRCD DC +GSDE C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 751 CSESEFQC--KNGKCIPAQWRCDHDEDCTDGSDEMEC 785
C +F C + +CIP WRCD DC +GSDE C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 377 LPCPDLEFKCASN-GRCILNSWKCDGEPDCKDGSDE 411
+ C +F C RCI W+CDG+ DC +GSDE
Sbjct: 5 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 463 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 497
C G C G+ N RCIP++ CDG+ DC +GSDE
Sbjct: 7 CKSGDFSCGGRVN-RCIPQFWRCDGQVDCDNGSDE 40
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 588 CKNGTFQCSS--GHCIAAYFRCDGDRDCRDLSDEMNC 622
CK+G F C CI ++RCDG DC + SDE C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 507 ETTDFQC--KNNRCIPKRWMCDFENDCGDQSDE 537
++ DF C + NRCIP+ W CD + DC + SDE
Sbjct: 8 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 709 ETTDFQC--KNNRCIPKRWMCDFENDCGDQSDE 739
++ DF C + NRCIP+ W CD + DC + SDE
Sbjct: 8 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 586 FQCKNGTFQCSSGH-CIAAYFRCDGDRDCRDLSDEMNCPPRYPG 628
C + F+C+ G CI + +RCDG DCRD SDE CP R PG
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 863 LSELNGTFQCSSGH-CIAAYFRCDGDRDCRDLSDEMNCPPRYPG 905
L+ + F+C+ G CI + +RCDG DCRD SDE CP R PG
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 377 LPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRP 420
L C +FKCA CI + ++CDG DC+D SDE A C RP
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE--AGCPTRP 46
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 548 QCSESEFQCKNGK-CIPAQWRCDHDEDCTDGSDEMEC 583
C+ ++F+C +G CI +++RCD DC D SDE C
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 750 QCSESEFQCKNGK-CIPAQWRCDHDEDCTDGSDEMEC 785
C+ ++F+C +G CI +++RCD DC D SDE C
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 296 VANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPAR 339
V NCT Q C CI ++CDG DC D SDE CP R
Sbjct: 4 VLNCTSAQFKCA-DGSSCINSRYRCDGVYDCRDNSDE-AGCPTR 45
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDET 665
C +F+CA C+ CDG DC DNSDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEA 40
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDET 942
C +F+CA C+ CDG DC DNSDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEA 40
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 125 CSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 159
C+S +F C + CI Y CDG DC D SDE C
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 176 CSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 210
C+S +F C + CI Y CDG DC D SDE C
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 340 QCRAGSFQCDNGN-CTPSASICDGVDDCRDGSDEKHC 375
C + F+C +G+ C S CDGV DCRD SDE C
Sbjct: 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 833 FQCKNGTFQCSSGH-CIAAYFRCDGDRDCRDLSELNG 868
C + F+C+ G CI + +RCDG DCRD S+ G
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG 41
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 549 CSESEFQCK-NGKCIPAQWRCDHDEDCTDGSDEMECGGF 586
C EFQC+ +G CIP +WRCD D DC D SDE C G
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 751 CSESEFQCK-NGKCIPAQWRCDHDEDCTDGSDEMECGGF 788
C EFQC+ +G CIP +WRCD D DC D SDE C G
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 383 EFKCASNGRCILNSWKCDGEPDCKDGSDE 411
EF+C +G CI W+CDG+ DC D SDE
Sbjct: 8 EFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 505 CHETTDFQCK-NNRCIPKRWMCDFENDCGDQSDE 537
CH T +FQC+ + CIP RW CD + DC D SDE
Sbjct: 4 CH-TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 707 CHETTDFQCK-NNRCIPKRWMCDFENDCGDQSDE 739
CH T +FQC+ + CIP RW CD + DC D SDE
Sbjct: 4 CH-TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 588 CKNGTFQCS-SGHCIAAYFRCDGDRDCRDLSDEMNC 622
C FQC G CI +RCDGD DC D SDE +C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 33.5 bits (75), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 870 FQCS-SGHCIAAYFRCDGDRDCRDLSDEMNC 899
FQC G CI +RCDGD DC D SDE +C
Sbjct: 9 FQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 310 DQKCIPWFWKCDGERDCGDGSDE 332
D CIP W+CDG+ DC D SDE
Sbjct: 14 DGLCIPLRWRCDGDTDCMDSSDE 36
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 627 PGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETS 666
PGG C +FQC LC+ CDG DC D+SDE S
Sbjct: 1 PGG--CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 904 PGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETS 943
PGG C +FQC LC+ CDG DC D+SDE S
Sbjct: 1 PGG--CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 378 PCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDED 412
PC EF C S G CI +SW+CDG PDCKD SDE+
Sbjct: 1 PCSAFEFHCLS-GECIHSSWRCDGGPDCKDKSDEE 34
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG 584
CS EF C +G+CI + WRCD DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG 786
CS EF C +G+CI + WRCD DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
C F C SG CI + +RCDG DC+D SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 38.5 bits (88), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
F C SG CI + +RCDG DC+D SDE NC
Sbjct: 7 FHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 37.7 bits (86), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 176 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
CS+ EF C + +CI ++ CDG DC D+SDE NC+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 125 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
CS+ EF C + +CI ++ CDG DC D+SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 341 CRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
C A F C +G C S+ CDG DC+D SDE++C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
C F C SG CI + +RCDG DC+D S+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSD 32
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 1317 EIQAGILHHCMNITGGSGYLCTCYQGF-------IIDKNNAKKCLDVDECATGIHHC--S 1367
++ G C N G Y C C G+ + C DVDEC++G H C S
Sbjct: 52 KVSCGKFSDCWNTEGS--YDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSS 109
Query: 1368 QVCTNLNGTYACSCNAGFTLSDGL 1391
VC N G+Y+C C G+ G+
Sbjct: 110 TVCFNTVGSYSCRCRPGWKPRHGI 133
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of
Egf-Homology Modules Of The Human Low Density Lipoprotein
Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of
Egf-Homology Modules Of The Human Low Density Lipoprotein
Receptor
Length = 82
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSG 1393
GY C C GF + ++C D+DEC CSQ+C NL G Y C C GF L D +
Sbjct: 22 GYECLCPDGFQLVAQ--RRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEEGFQL-DPHTK 77
Query: 1394 VCKA 1397
CKA
Sbjct: 78 ACKA 81
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTL 1387
GY C C GF + ++C D+DEC CSQ+C NL G Y C C GF L
Sbjct: 49 GYECLCPDGFQLVAQ--RRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEEGFQL 99
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTL 1387
GY C C GF + ++C D+DEC CSQ+C NL G Y C C GF L
Sbjct: 49 GYECLCPDGFQLVAQ--RRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEEGFQL 99
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 548 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEME 582
+C +EFQC++GKCI +W CD +C DGSDE +
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ 41
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 750 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEME 784
+C +EFQC++GKCI +W CD +C DGSDE +
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ 41
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 507 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLC 542
E +FQC++ +CI +W+CD +C D SDE+++ C
Sbjct: 9 ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 709 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLC 744
E +FQC++ +CI +W+CD +C D SDE+++ C
Sbjct: 9 ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44
Score = 37.7 bits (86), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMC 416
C EF+C +G+CI W CDG +C+DGSDE C
Sbjct: 8 CERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETC 44
Score = 37.4 bits (85), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 1040 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP 1072
C ++F+C +GKCI Y VC+ ++C+D SDE
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDES 40
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 955 HKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTV 991
+++QC +G+CI+ +CDG C DGSDE+ T +V
Sbjct: 11 NEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV 47
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 340 QCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKH 374
+C FQC +G C +CDG +C+DGSDE
Sbjct: 7 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ 41
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 585 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDE 619
G +C+ FQC G CI+ + CDG +C+D SDE
Sbjct: 5 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPM 334
C + + C D KCI + W CDG +C DGSDE
Sbjct: 8 CERNEFQC--QDGKCISYKWVCDGSAECQDGSDESQ 41
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 125 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 156
C EF CQ+ KCI + CDG +C D SDE
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 176 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 207
C EF CQ+ KCI + CDG +C D SDE
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDE 896
FQC G CI+ + CDG +C+D SDE
Sbjct: 13 FQCQDGKCISYKWVCDGSAECQDGSDE 39
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 832 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
G +C+ FQC G CI+ + CDG +C+D S+
Sbjct: 5 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSD 38
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 1320 AGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYAC 1379
G H C ++ GY C C GF + ++C D+DEC CSQ+C NL G Y C
Sbjct: 10 GGCSHVCNDLK--IGYECLCPDGFQLVAQ--RRCEDIDECQDP-DTCSQLCVNLEGGYKC 64
Query: 1380 SCNAGFTL 1387
C GF L
Sbjct: 65 QCEEGFQL 72
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTL 1387
GY C C GF + ++C D+DEC CSQ+C NL G Y C C GF L
Sbjct: 25 GYECLCPDGFQLVAQ--RRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQL 75
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTL 1387
GY C C GF + ++C D+DEC CSQ+C NL G Y C C GF L
Sbjct: 25 GYECLCPDGFQLVAQ--RRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQL 75
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
Length = 40
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE 580
C + FQC + CIP W CD+D DC DGSDE
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE 782
C + FQC + CIP W CD+D DC DGSDE
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAG 544
FQC ++ CIP+ W CD + DC D SDE C G
Sbjct: 7 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRG 40
Score = 37.0 bits (84), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAG 746
FQC ++ CIP+ W CD + DC D SDE C G
Sbjct: 7 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRG 40
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCH 417
C F+C S+ CI W CD +PDC+DGSDE P C
Sbjct: 2 CGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCR 39
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
TC + F+CN+ CI C+ + DCED SDE
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 34.3 bits (77), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDE 619
C +FQC+S CI + CD D DC D SDE
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 33.5 bits (75), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 341 CRAGSFQCDNGNCTPSASICDGVDDCRDGSDE 372
C SFQC++ C P CD DC DGSDE
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 478 CIPKWLFCDGKDDCRDGSDELPQNC 502
CIP+ CD DC DGSDE PQ C
Sbjct: 14 CIPQLWACDNDPDCEDGSDEWPQRC 38
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 680 CIPKWLFCDGKDDCRDGSDELPQNC 704
CIP+ CD DC DGSDE PQ C
Sbjct: 14 CIPQLWACDNDPDCEDGSDEWPQRC 38
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDE 896
+FQC+S CI + CD D DC D SDE
Sbjct: 5 ASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 124 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 157
TC F C + CI + + CD + DC D SDE+
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 34
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 175 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 208
TC F C + CI + + CD + DC D SDE+
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 34
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
C +FQC+S CI + CD D DC D S+
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSD 32
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 313 CIPWFWKCDGERDCGDGSDE 332
CIP W CD + DC DGSDE
Sbjct: 14 CIPQLWACDNDPDCEDGSDE 33
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 509 TDFQCKNNRCIPKRWMCDFENDCGDQSDE 537
T + C N++CI K W+CD +NDCGD SDE
Sbjct: 10 TQYTCDNHQCISKNWVCDTDNDCGDGSDE 38
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 711 TDFQCKNNRCIPKRWMCDFENDCGDQSDE 739
T + C N++CI K W+CD +NDCGD SDE
Sbjct: 10 TQYTCDNHQCISKNWVCDTDNDCGDGSDE 38
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 545 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQ 587
A C ++++ C N +CI W CD D DC DGSDE C +
Sbjct: 3 APASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNSTE 45
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 747 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQ 789
A C ++++ C N +CI W CD D DC DGSDE C +
Sbjct: 3 APASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNSTE 45
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 124 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCR 160
+C ++ C N +CI K + CD ++DCGD SDE NC
Sbjct: 6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 175 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
+C ++ C N +CI K + CD ++DCGD SDE NC+
Sbjct: 6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 1000 LYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCH 1034
L +QYTC NH+CI + +C+ +DCGD SDE C+
Sbjct: 8 LDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 956 KYQCDNGRCIASYQLCDGVDNCGDGSDENN 985
+Y CDN +CI+ +CD ++CGDGSDE N
Sbjct: 11 QYTCDNHQCISKNWVCDTDNDCGDGSDEKN 40
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 297 ANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
A+C Q+ C H +CI W CD + DCGDGSDE
Sbjct: 5 ASCLDTQYTCDNH--QCISKNWVCDTDNDCGDGSDE 38
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 98 KGWLCDHDNDCGDGSDE 114
K W+CD DNDCGDGSDE
Sbjct: 22 KNWVCDTDNDCGDGSDE 38
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 374 HCDLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDE 411
H C D ++ C N +CI +W CD + DC DGSDE
Sbjct: 2 HAPASCLDTQYTC-DNHQCISKNWVCDTDNDCGDGSDE 38
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 333 PMSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCD 376
P SC Q + CDN C +CD +DC DGSDEK+C+
Sbjct: 4 PASCLDTQ-----YTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 1038 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDE 1079
++C +Q+ C+N +CI + VC+ ++DC D SDE +CN E
Sbjct: 5 ASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEK-NCNSTE 45
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 866 LNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
L+ + C + CI+ + CD D DC D SDE NC
Sbjct: 8 LDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 41
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
C + + C + CI+ + CD D DC D SDE NC
Sbjct: 7 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNC 41
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 128 EEFAC-QNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNF 186
E F C Q +C+ + C+G++DCGD+SDE NCR + + D+Y S F
Sbjct: 69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGSLASGINLF 128
Query: 187 KCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRPYDIHVYHPLKQLAY 238
+ D G CS Y +L +PY++ Y P Q Y
Sbjct: 129 TNSFEGPVLDHRYYAG------GCSPHY-ILNTRFRKPYNVESYTPQTQGKY 173
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 514 KNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQC 549
+ RC+ +R +C+ +NDCGDQSDEA C Y++C
Sbjct: 75 QTGRCVNRRLLCNGDNDCGDQSDEAN--CRRIYKKC 108
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 716 KNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQC 751
+ RC+ +R +C+ +NDCGDQSDEA C Y++C
Sbjct: 75 QTGRCVNRRLLCNGDNDCGDQSDEAN--CRRIYKKC 108
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 637 FQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHK 679
F CA T CV + LC+G +DCGD SDE NC ++K
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDEA-------NCRRIYK 106
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 914 FQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHK 956
F CA T CV + LC+G +DCGD SDE NC ++K
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDEA-------NCRRIYK 106
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 854 CDGDRDCRDLSELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
C +R CR G +G C+ C+GD DC D SDE NC
Sbjct: 56 CVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
Score = 33.9 bits (76), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 572 EDCTDGS---DEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
EDC ++ C GF C +G C+ C+GD DC D SDE NC
Sbjct: 54 EDCVTNRPCRSQVRCEGFVC------AQTGRCVNRRLLCNGDNDCGDQSDEANC 101
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1010 KCIDRAALCNHVDDCGDLSDELGCHKENSTC 1040
+C++R LCN +DCGD SDE C + C
Sbjct: 78 RCVNRRLLCNGDNDCGDQSDEANCRRIYKKC 108
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 384 FKCASNGRCILNSWKCDGEPDCKDGSDE 411
F CA GRC+ C+G+ DC D SDE
Sbjct: 71 FVCAQTGRCVNRRLLCNGDNDCGDQSDE 98
Score = 30.4 bits (67), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 1043 SQFRC------NNGKCIDYHLVCNKESDCEDDSDE 1071
SQ RC G+C++ L+CN ++DC D SDE
Sbjct: 64 SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDE 98
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 282 PNQFY--LDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE-PMSCPA 338
P F +D R K +C + CGG++Q+CI CDG +DC + DE P C
Sbjct: 34 PEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT 93
Query: 339 RQCRAGS 345
+AG+
Sbjct: 94 SVVKAGN 100
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 379 CPDLEFKCASNGR-CILNSWKCDGEPDCKDGSDEDPAMC 416
C F+C N + CI + CDG DC + DEDP +C
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC 91
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNC 704
+CI LFCDG+ DCRDGSDE P+ C
Sbjct: 67 ECIHDLLFCDGEKDCRDGSDEDPETC 92
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 478 CIPKWLFCDGKDDCRDGSDELPQNC 502
CI LFCDG+ DCRDGSDE P+ C
Sbjct: 68 CIHDLLFCDGEKDCRDGSDEDPETC 92
Score = 37.4 bits (85), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 371 DEKHCDLPCPDLEFKCASN-GRCILNSWKCDGEPDCKDGSDEDPAMC 416
+E HCD + E +C + CI + CDGE DC+DGSDEDP C
Sbjct: 50 EEHHCD----EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETC 92
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 290 RDNKTCVANCTQGQHHCGGHDQKC-------IPWFWKCDGERDCGDGSDE-PMSCPARQC 341
R K ++N + HHC H+ +C I CDGE+DC DGSDE P +C
Sbjct: 40 RQLKARISNLEE--HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNIT 97
Query: 342 RAGS 345
GS
Sbjct: 98 HVGS 101
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 629 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDET 665
G+ C F C TH+CV + LCDG DC D +DE+
Sbjct: 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 42
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 906 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDET 942
G+ C F C TH+CV + LCDG DC D +DE+
Sbjct: 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 42
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 547 RQCSESEFQCKNGK-CIPAQWRCDHDEDCTDGSDEMECGG 585
+ C S F C C+P +W CD D+DC DG+DE G
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 46
Score = 37.4 bits (85), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 749 RQCSESEFQCKNGK-CIPAQWRCDHDEDCTDGSDEMECGG 787
+ C S F C C+P +W CD D+DC DG+DE G
Sbjct: 7 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 46
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 670 SNMNCTSLHKCIPKWLFCDGKDDCRDGSDE 699
S+ +C H C+P+ CDG DC DG+DE
Sbjct: 12 SSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 313 CIPWFWKCDGERDCGDGSDEPMS 335
C+P W CDG++DC DG+DE ++
Sbjct: 22 CVPERWLCDGDKDCADGADESIA 44
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 509 TDFQCKNNR-CIPKRWMCDFENDCGDQSDEA 538
+ F C C+P+RW+CD + DC D +DE+
Sbjct: 12 SSFSCPGTHVCVPERWLCDGDKDCADGADES 42
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 711 TDFQCKNNR-CIPKRWMCDFENDCGDQSDEA 740
+ F C C+P+RW+CD + DC D +DE+
Sbjct: 12 SSFSCPGTHVCVPERWLCDGDKDCADGADES 42
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPA 414
C F C C+ W CDG+ DC DG+DE A
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 44
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 470 CPGKTNYRCIPKWLFCDGKDDCRDGSDE 497
CPG + C+P+ CDG DC DG+DE
Sbjct: 16 CPG--THVCVPERWLCDGDKDCADGADE 41
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 585 GFQCKNGTFQCSSGH-CIAAYFRCDGDRDCRDLSDE 619
G C +F C H C+ + CDGD+DC D +DE
Sbjct: 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 629 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDET 665
G+ C F C TH+CV + LCDG DC D +DE+
Sbjct: 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 906 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDET 942
G+ C F C TH+CV + LCDG DC D +DE+
Sbjct: 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 547 RQCSESEFQCKNGK-CIPAQWRCDHDEDCTDGSDEMECGG 585
+ C S F C C+P +W CD D+DC DG+DE G
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 37.0 bits (84), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 749 RQCSESEFQCKNGK-CIPAQWRCDHDEDCTDGSDEMECGG 787
+ C S F C C+P +W CD D+DC DG+DE G
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 670 SNMNCTSLHKCIPKWLFCDGKDDCRDGSDE 699
S+ +C H C+P+ CDG DC DG+DE
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 509 TDFQCKNNR-CIPKRWMCDFENDCGDQSDEA 538
+ F C C+P+RW+CD + DC D +DE+
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 711 TDFQCKNNR-CIPKRWMCDFENDCGDQSDEA 740
+ F C C+P+RW+CD + DC D +DE+
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADES 40
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 313 CIPWFWKCDGERDCGDGSDEPMS 335
C+P W CDG++DC DG+DE ++
Sbjct: 20 CVPERWLCDGDKDCADGADESIA 42
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAM 415
C F C C+ W CDG+ DC DG+DE A
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 461 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 497
+ C CPG + C+P+ CDG DC DG+DE
Sbjct: 5 KTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADE 39
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 585 GFQCKNGTFQCSSGH-CIAAYFRCDGDRDCRDLSDE 619
G C +F C H C+ + CDGD+DC D +DE
Sbjct: 4 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 306 CGGHDQKCIPWFWKCDGERDCGDGSDE 332
CG H +CIP W+CDGE DC G DE
Sbjct: 10 CGAHSTQCIPVSWRCDGENDCDSGEDE 36
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 547 RQCSESEFQC--KNGKCIPAQWRCDHDEDCTDGSDEMECG 584
R C E C + +CIP WRCD + DC G DE CG
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 40
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 749 RQCSESEFQC--KNGKCIPAQWRCDHDEDCTDGSDEMECG 786
R C E C + +CIP WRCD + DC G DE CG
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 40
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 123 RTCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEFNC 159
RTC E +C + +CI ++ CDGE+DC DE NC
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 39
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 174 RTCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEFNC 210
RTC E +C + +CI ++ CDGE+DC DE NC
Sbjct: 1 RTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 39
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 383 EFKC-ASNGRCILNSWKCDGEPDCKDGSDED 412
E C A + +CI SW+CDGE DC G DE+
Sbjct: 7 EISCGAHSTQCIPVSWRCDGENDCDSGEDEE 37
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
C+ FQCS G+CI +CD + DC+DLSDE+ C
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
FQCS G+CI +CD + DC+DLSDE+ C
Sbjct: 9 FQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583
C EFQC +G CI +CD + DC D SDE+ C
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785
C EFQC +G CI +CD + DC D SDE+ C
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 124 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
TC +EF C + CI + CD E DC D SDE C
Sbjct: 3 TCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 33.9 bits (76), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 175 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 210
TC +EF C + CI + CD E DC D SDE C
Sbjct: 3 TCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNG 868
C+ FQCS G+CI +CD + DC+DLS+ G
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVG 37
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 341 CRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
CR FQC +GNC + CD DC+D SDE C
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 1038 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
+TC +F+C++G CI C++E DC+D SDE
Sbjct: 2 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDE 35
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 380 PDLEFKCASNGRCILNSWKCDGEPDCKDGSDE 411
PD EF+C S+G CI S +CD E DCKD SDE
Sbjct: 6 PD-EFQC-SDGNCIHGSRQCDREYDCKDLSDE 35
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 306 CGGHDQKCIPWFWKCDGERDCGDGSDE 332
CG H +CIP W+CDGE DC G DE
Sbjct: 8 CGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 560 KCIPAQWRCDHDEDCTDGSDEMECG 584
+CIP WRCD + DC G DE CG
Sbjct: 14 QCIPVSWRCDGENDCDSGEDEENCG 38
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 762 KCIPAQWRCDHDEDCTDGSDEMECG 786
+CIP WRCD + DC G DE CG
Sbjct: 14 QCIPVSWRCDGENDCDSGEDEENCG 38
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 383 EFKC-ASNGRCILNSWKCDGEPDCKDGSDED 412
E C A + +CI SW+CDGE DC G DE+
Sbjct: 5 EISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 298 NCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
+C + +H CGG D +CI + CDG DC +G DE
Sbjct: 54 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 349 DNGNCTPSASICDGVDDCRDGSDEKHCDLP 378
D+ C +CDG +DCR+G DEK C LP
Sbjct: 65 DDPQCISKLFVCDGHNDCRNGEDEKDCTLP 94
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 955 HKYQC--DNGRCIASYQLCDGVDNCGDGSDENNLTLCT 990
H++QC D+ +CI+ +CDG ++C +G DE + TL T
Sbjct: 58 HEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPT 95
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 472 GKTNYRCIPKWLFCDGKDDCRDGSDE 497
G + +CI K CDG +DCR+G DE
Sbjct: 63 GGDDPQCISKLFVCDGHNDCRNGEDE 88
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 679 KCIPKWLFCDGKDDCRDGSDE 699
+CI K CDG +DCR+G DE
Sbjct: 68 QCISKLFVCDGHNDCRNGEDE 88
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 38.1 bits (87), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 180 EFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRV 216
+F C + +CI + C+GE+DCGD SDE +C R V
Sbjct: 122 KFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAV 158
Score = 38.1 bits (87), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 943 SSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDE 983
S LC +K++CD+GRCIA C+G ++CGD SDE
Sbjct: 109 SKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDE 149
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
CKN F+C SG CIA C+G+ DC D SDE +C
Sbjct: 119 CKN-KFRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 37.0 bits (84), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 1033 CHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
C E + C + +FRC++G+CI L CN E+DC D+SDE
Sbjct: 112 CKIEEADCKN-KFRCDSGRCIARKLECNGENDCGDNSDE 149
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 848 IAAYFRCDGDRDCR-DLSELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
+ A+ C + C+ + ++ F+C SG CIA C+G+ DC D SDE +C
Sbjct: 100 LVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 129 EFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNF 186
+F C + +CI + C+GE+DCGD SDE RD C KY S + F
Sbjct: 122 KFRCDSGRCIARKLECNGENDCGDNSDE---RDCGRTKAVCTRKYNPIPSVQLMGNGF 176
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDE 537
F+C + RCI ++ C+ ENDCGD SDE
Sbjct: 123 FRCDSGRCIARKLECNGENDCGDNSDE 149
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDE 739
F+C + RCI ++ C+ ENDCGD SDE
Sbjct: 123 FRCDSGRCIARKLECNGENDCGDNSDE 149
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 753 ESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCV 793
+++F+C +G+CI + C+ + DC D SDE +CG + C
Sbjct: 120 KNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCT 160
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 551 ESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG 584
+++F+C +G+CI + C+ + DC D SDE +CG
Sbjct: 120 KNKFRCDSGRCIARKLECNGENDCGDNSDERDCG 153
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 994 RVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCS 1041
+++ + +++ C + +CI R CN +DCGD SDE C + + C+
Sbjct: 113 KIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCT 160
Score = 32.0 bits (71), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 636 KFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIP 682
KF+C S C+ + C+G +DCGDNSDE + CT + IP
Sbjct: 122 KFRCDSGR-CIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIP 167
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 346 FQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
F+CD+G C C+G +DC D SDE+ C
Sbjct: 123 FRCDSGRCIARKLECNGENDCGDNSDERDC 152
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 383 EFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWV 440
+F+C S GRCI +C+GE DC D SDE R C + R + IP + +
Sbjct: 122 KFRCDS-GRCIARKLECNGENDCGDNSDE-------RDCGRTKAVCTRKYNPIPSVQL 171
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
CKN F+C SG CIA C+G+ DC D S+
Sbjct: 119 CKN-KFRCDSGRCIARKLECNGENDCGDNSD 148
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
C+ FQCS G+CI +CD + DC+D+SDE+ C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
FQCS G+CI +CD + DC+D+SDE+ C
Sbjct: 8 FQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583
C EFQC +G CI +CD + DC D SDE+ C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785
C EFQC +G CI +CD + DC D SDE+ C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 124 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
TC +EF C + CI + CD E DC D SDE C
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 175 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 210
TC +EF C + CI + CD E DC D SDE C
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 341 CRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
CR FQC +GNC + CD DC+D SDE C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNG 868
C+ FQCS G+CI +CD + DC+D+S+ G
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVG 36
Score = 31.6 bits (70), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
TC +F+C++G CI C++E DC+D SDE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 380 PDLEFKCASNGRCILNSWKCDGEPDCKDGSDE 411
PD EF+C S+G CI S +CD E DCKD SDE
Sbjct: 5 PD-EFQC-SDGNCIHGSRQCDREYDCKDMSDE 34
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+ Binding
Epidermal Growth Factor-like Domains
Length = 86
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 1325 HCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHC-SQVCTNLNGTYACSCNA 1383
C+N G + C C +G+ K C+D+DEC C VC N G+Y C C
Sbjct: 17 QCVNTPGD--FECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPP 74
Query: 1384 GFTLSDGLSG 1393
G LS +S
Sbjct: 75 GHQLSPNISA 84
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 1325 HCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAG 1384
C+N G Y C C G+I+ N +C+D DEC+ G + C N+ G + C+C G
Sbjct: 18 QCINTDGS--YRCECPFGYILAGN---ECVDTDECSVGNPCGNGTCKNVIGGFECTCEEG 72
Query: 1385 F 1385
F
Sbjct: 73 F 73
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 37.4 bits (85), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 1337 CTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLS 1388
C C +G+I+D + C D+DEC G CS VC NL GT+ C C L+
Sbjct: 63 CECPEGYILD--DGFICTDIDECENG-GFCSGVCHNLPGTFECICGPDSALA 111
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 37.4 bits (85), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 1337 CTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLS 1388
C C +G+I+D + C D+DEC G CS VC NL GT+ C C L+
Sbjct: 63 CECPEGYILD--DGFICTDIDECENG-GFCSGVCHNLPGTFECICGPDSALA 111
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1) Receptor
Ldla Module
Length = 43
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 176 CSSEEFACQNF-KCIRKTYHCDGEDDCGDRSDEFNCS 211
CS F C N KC+ + HC+G DDCG+++DE NC
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43
Score = 37.0 bits (84), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 125 CSSEEFACQNF-KCIRKTYHCDGEDDCGDRSDEFNC 159
CS F C N KC+ + HC+G DDCG+++DE NC
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 30.8 bits (68), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 674 CTSLHKCIPKWLFCDGKDDCRDGSDE 699
C ++ KC+P+ L C+G DDC + +DE
Sbjct: 14 CGNITKCLPQLLHCNGVDDCGNQADE 39
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 1326 CMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA-- 1383
C NI G + C C +G+ + +K C D+DEC+ + C+Q+C N G Y C C+
Sbjct: 18 CKNIPGD--FECECPEGYRYNLK-SKSCEDIDECSENM--CAQLCVNYPGGYTCYCDGKK 72
Query: 1384 GFTLS 1388
GF L+
Sbjct: 73 GFKLA 77
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 1025 GDLSDELGCHKENSTCSSSQ----FRCN-NGKCIDYHLVCNKESDCEDDSDE 1071
GD+ D+ C + +Q F+C G+C+ HLVCN + DC D SDE
Sbjct: 46 GDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDE 97
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 383 EFKCASNGRCILNSWKCDGEPDCKDGSDED 412
+F+C GRC+ C+G+ DC DGSDED
Sbjct: 69 DFQCKETGRCLKRHLVCNGDQDCLDGSDED 98
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 548 QCSESEFQCK-NGKCIPAQWRCDHDEDCTDGSDEMEC 583
QC + +FQCK G+C+ C+ D+DC DGSDE +C
Sbjct: 65 QCGQ-DFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 750 QCSESEFQCK-NGKCIPAQWRCDHDEDCTDGSDEMEC 785
QC + +FQCK G+C+ C+ D+DC DGSDE +C
Sbjct: 65 QCGQ-DFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
Query: 580 EMECGG-FQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
+ +CG FQCK +G C+ + C+GD+DC D SDE +C
Sbjct: 63 QAQCGQDFQCKE------TGRCLKRHLVCNGDQDCLDGSDEDDC 100
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 870 FQCS-SGHCIAAYFRCDGDRDCRDLSDEMNC 899
FQC +G C+ + C+GD+DC D SDE +C
Sbjct: 70 FQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 338 ARQCRAGS-FQC-DNGNCTPSASICDGVDDCRDGSDEKHCD 376
RQ + G FQC + G C +C+G DC DGSDE C+
Sbjct: 61 VRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCE 101
Score = 31.2 bits (69), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 17/61 (27%)
Query: 639 CASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSD 698
C+S+ CV Q++ CG + C +C+ + L C+G DC DGSD
Sbjct: 54 CSSSTTCVRQAQ-------CG----------QDFQCKETGRCLKRHLVCNGDQDCLDGSD 96
Query: 699 E 699
E
Sbjct: 97 E 97
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of Tva
Length = 47
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 379 CPDLEFKCA----SNGRCILNSWKCDGEPDCKDGSDE 411
CP +F+C+ ++G C W CDG PDC DG DE
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 548 QCSESEFQCK-----NGKCIPAQWRCDHDEDCTDGSDEMECG 584
+C +F+C +G+C P W CD DC DG DE CG
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45
Score = 33.9 bits (76), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 750 QCSESEFQCK-----NGKCIPAQWRCDHDEDCTDGSDEMECG 786
+C +F+C +G+C P W CD DC DG DE CG
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding Domain
Of Tva
Length = 47
Score = 35.8 bits (81), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 379 CPDLEFKCA----SNGRCILNSWKCDGEPDCKDGSDE 411
CP +F+C+ ++G C W CDG PDC DG DE
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 546 YRQCSESEFQCK-----NGKCIPAQWRCDHDEDCTDGSDEMECG 584
+ C +F+C +G+C P W CD DC DG DE CG
Sbjct: 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 748 YRQCSESEFQCK-----NGKCIPAQWRCDHDEDCTDGSDEMECG 786
+ C +F+C +G+C P W CD DC DG DE CG
Sbjct: 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 335 SCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
SCP Q R +G C P +CDG DC DG DE C
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 41/113 (36%), Gaps = 28/113 (24%)
Query: 1076 NVDECAKV--ETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSNKVLTRSTVIYHVR 1133
+VDEC ++ C H C L GYYC C GY I H
Sbjct: 119 DVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGY---------------------ILHQN 157
Query: 1134 IWSSNVLVMADVYSTRGSVMENRTVKMEVTKIPLCALDVR-----SIKLDVAE 1181
+ + L V++ R + + K+ CA ++R SI LD E
Sbjct: 158 KHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCAYNIRLEEGFSITLDFVE 210
>pdb|1ITV|A Chain A, Dimeric Form Of The Haemopexin Domain Of Mmp9
pdb|1ITV|B Chain B, Dimeric Form Of The Haemopexin Domain Of Mmp9
Length = 195
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 1496 YWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGAS 1552
YW S+ GS+P+G ++A R L S E P S L G+ W TGAS
Sbjct: 27 YWRFSEGRGSRPQGPFLIADKWPALPRKLDSV-FEEPLSKKLFFFSGRQVWVYTGAS 82
>pdb|1Z27|A Chain A, Crystal Structure Of Native Pvs25, An Ookinete Protein From
Plasmodium Vivax.
pdb|1Z3G|A Chain A, Crystal Structure Of Complex Between Pvs25 And Fab Fragment
Of Malaria Transmission Blocking Antibody 2a8
pdb|1Z3G|B Chain B, Crystal Structure Of Complex Between Pvs25 And Fab Fragment
Of Malaria Transmission Blocking Antibody 2a8
Length = 186
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 1337 CTCYQGFIIDKNNAKKCLDVDE--CATGIHHCSQVCTNLNGTYACSCNAGFTL 1387
C+C G + + + KKC E C + ++VC N+ G Y C C GFT
Sbjct: 118 CSCAIGKVPNPEDEKKCTKTGETACQLKCNTDNEVCKNVEGVYKCQCMEGFTF 170
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1076 NVDEC--AKVETNQCGHKCVDTLTGYYCECNTGY 1107
++DEC A E C H C + L G+YC C GY
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGY 156
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 1073 LHCNVDECAKVETNQ--CGHKCVDTLTGYYCECNTGY---NDDDIGTVSPSSNKVLTRST 1127
+ +VDEC + E + C H C + + GYYC C GY D+ V S N R+
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTG 176
Query: 1128 VI 1129
VI
Sbjct: 177 VI 178
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 30/128 (23%)
Query: 1335 YLCTCYQGFIIDKNNAKKC--LDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLS 1392
Y CTC +GF K C C+ C Q C + CSC G+TL+D
Sbjct: 23 YTCTCLEGF-----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD--- 74
Query: 1393 GVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDE------------RRIEALDIDPV 1440
+ K I GP +T +RR R V + +A D+DP
Sbjct: 75 ------NGKACI--PTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAADLDPT 126
Query: 1441 DEIIYWVD 1448
+ +D
Sbjct: 127 ENPFDLLD 134
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 1073 LHCNVDECAKVETNQ--CGHKCVDTLTGYYCECNTGY---NDDDIGTVSPSSNKVLTRST 1127
+ +VDEC + E + C H C + + GYYC C GY D+ V S N R+
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTG 176
Query: 1128 VI 1129
VI
Sbjct: 177 VI 178
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 30.8 bits (68), Expect = 6.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1268 VDLDGKHKHIVISGQKVPHVFALTLFEDHIY 1298
+++DGK I + G K PH + L + HIY
Sbjct: 88 INIDGKTXDITVKGLKHPHRYVLDAAQTHIY 118
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 47/132 (35%), Gaps = 30/132 (22%)
Query: 1331 GGSGYLCTCYQGFIIDKNNAKKC--LDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLS 1388
G Y CTC +GF K C C+ C Q C + CSC G+TL+
Sbjct: 59 GLGEYTCTCLEGF-----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Query: 1389 DGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDE------------RRIEALD 1436
D + K I GP +T +RR R V + +A D
Sbjct: 114 D---------NGKACI--PTGPYPCGKQTLERRKRSVAQATSSSGEAPDSITWKPYDAAD 162
Query: 1437 IDPVDEIIYWVD 1448
+DP + +D
Sbjct: 163 LDPTENPFDLLD 174
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 30.4 bits (67), Expect = 8.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1268 VDLDGKHKHIVISGQKVPHVFALTLFEDHIY 1298
+++DGK I + G K PH + L + HIY
Sbjct: 88 INIDGKTMDITVKGLKHPHRYVLDAAQTHIY 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,819,718
Number of Sequences: 62578
Number of extensions: 2656668
Number of successful extensions: 6354
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 4520
Number of HSP's gapped (non-prelim): 1194
length of query: 1576
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1464
effective length of database: 7,964,601
effective search space: 11660175864
effective search space used: 11660175864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)