Query psy948
Match_columns 1576
No_of_seqs 655 out of 3906
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 20:28:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1215|consensus 100.0 1.4E-49 3E-54 533.1 51.1 759 750-1576 30-872 (877)
2 KOG1214|consensus 100.0 1.9E-36 4E-41 357.6 22.7 227 1330-1576 804-1158(1289)
3 KOG1214|consensus 100.0 8.7E-36 1.9E-40 352.0 26.8 211 1158-1386 1073-1286(1289)
4 KOG1215|consensus 100.0 4.1E-34 8.8E-39 384.0 36.7 452 924-1576 112-569 (877)
5 PLN02919 haloacid dehalogenase 99.4 6E-11 1.3E-15 160.6 32.2 275 1189-1564 562-891 (1057)
6 PF08450 SGL: SMP-30/Gluconola 99.1 1.5E-08 3.3E-13 116.8 25.7 236 1197-1549 2-245 (246)
7 PLN02919 haloacid dehalogenase 99.1 1.2E-08 2.7E-13 138.5 26.8 235 1238-1569 565-841 (1057)
8 PF08450 SGL: SMP-30/Gluconola 98.9 3.2E-07 7E-12 105.7 24.4 123 1430-1571 86-223 (246)
9 PF00057 Ldl_recept_a: Low-den 98.8 2.6E-09 5.7E-14 83.3 3.7 36 548-583 2-37 (37)
10 PF10282 Lactonase: Lactonase, 98.8 6.3E-06 1.4E-10 100.0 33.4 275 1175-1562 13-323 (345)
11 PF00058 Ldl_recept_b: Low-den 98.8 1.4E-08 3E-13 82.3 6.6 42 8-65 1-42 (42)
12 PF00057 Ldl_recept_a: Low-den 98.8 3.8E-09 8.2E-14 82.5 3.1 36 750-785 2-37 (37)
13 cd00112 LDLa Low Density Lipop 98.7 4.7E-09 1E-13 81.1 2.6 35 549-583 1-35 (35)
14 cd00112 LDLa Low Density Lipop 98.7 6.3E-09 1.4E-13 80.4 2.4 35 751-785 1-35 (35)
15 PF00058 Ldl_recept_b: Low-den 98.6 7.5E-08 1.6E-12 78.0 6.9 41 1493-1539 1-42 (42)
16 PRK11028 6-phosphogluconolacto 98.5 6.3E-05 1.4E-09 90.8 31.9 289 1167-1562 4-305 (330)
17 PF14670 FXa_inhibition: Coagu 98.4 1.5E-07 3.2E-12 72.7 2.3 36 1359-1395 1-36 (36)
18 smart00192 LDLa Low-density li 98.4 2E-07 4.3E-12 71.2 3.0 32 549-580 2-33 (33)
19 smart00192 LDLa Low-density li 98.4 2.3E-07 4.9E-12 70.9 2.7 32 751-782 2-33 (33)
20 smart00135 LY Low-density lipo 98.4 6E-07 1.3E-11 73.2 5.3 42 47-90 2-43 (43)
21 smart00135 LY Low-density lipo 98.3 1.2E-06 2.5E-11 71.5 5.7 42 1523-1565 2-43 (43)
22 PF14670 FXa_inhibition: Coagu 98.2 4.7E-07 1E-11 70.0 1.6 32 1084-1115 4-35 (36)
23 KOG4659|consensus 98.2 0.00021 4.6E-09 91.8 25.3 316 1199-1571 319-706 (1899)
24 PF07645 EGF_CA: Calcium-bindi 98.1 2.2E-06 4.7E-11 69.6 2.7 35 1076-1111 1-37 (42)
25 TIGR02604 Piru_Ver_Nterm putat 98.1 0.0008 1.7E-08 82.4 25.8 103 1193-1302 12-142 (367)
26 PF10282 Lactonase: Lactonase, 98.0 0.0035 7.6E-08 76.2 30.8 266 1167-1536 51-344 (345)
27 PF12999 PRKCSH-like: Glucosid 98.0 6E-06 1.3E-10 86.9 5.1 70 300-372 34-110 (176)
28 PF12999 PRKCSH-like: Glucosid 98.0 7.2E-06 1.6E-10 86.4 4.6 75 343-418 35-117 (176)
29 COG3391 Uncharacterized conser 97.9 0.0038 8.2E-08 76.8 28.4 278 1195-1548 31-317 (381)
30 PF07995 GSDH: Glucose / Sorbo 97.9 0.0024 5.1E-08 77.0 24.7 121 1427-1557 178-331 (331)
31 PRK11028 6-phosphogluconolacto 97.8 0.0082 1.8E-07 72.4 29.2 138 1167-1306 49-198 (330)
32 COG3386 Gluconolactonase [Carb 97.7 0.0013 2.9E-08 77.6 19.3 83 1480-1570 162-252 (307)
33 KOG4659|consensus 97.7 0.00025 5.5E-09 91.2 13.8 151 1403-1565 377-565 (1899)
34 PF07645 EGF_CA: Calcium-bindi 97.7 3.3E-05 7.1E-10 62.7 3.4 35 1355-1389 1-37 (42)
35 TIGR03866 PQQ_ABC_repeats PQQ- 97.7 0.066 1.4E-06 62.7 32.9 92 1432-1539 209-300 (300)
36 PF06977 SdiA-regulated: SdiA- 97.7 0.0046 1E-07 70.6 21.9 114 1429-1549 117-240 (248)
37 COG2706 3-carboxymuconate cycl 97.6 0.077 1.7E-06 61.8 30.2 298 1174-1570 15-331 (346)
38 PF03022 MRJP: Major royal jel 97.3 0.051 1.1E-06 64.0 24.7 104 1439-1549 140-254 (287)
39 TIGR03866 PQQ_ABC_repeats PQQ- 97.3 0.47 1E-05 55.5 33.3 126 1431-1565 158-283 (300)
40 PF03088 Str_synth: Strictosid 97.3 0.00086 1.9E-08 63.6 7.8 76 1485-1562 2-88 (89)
41 TIGR02658 TTQ_MADH_Hv methylam 97.2 0.58 1.3E-05 56.4 32.7 252 1239-1558 45-327 (352)
42 COG3391 Uncharacterized conser 97.1 0.091 2E-06 64.8 25.8 238 1240-1550 30-273 (381)
43 PRK04043 tolB translocation pr 96.9 0.14 3E-06 63.9 24.8 129 1435-1576 282-417 (419)
44 KOG1520|consensus 96.9 0.0028 6E-08 74.6 8.3 132 1430-1570 115-261 (376)
45 PF06977 SdiA-regulated: SdiA- 96.8 0.069 1.5E-06 61.2 19.0 71 1429-1500 170-240 (248)
46 COG3386 Gluconolactonase [Carb 96.7 0.035 7.6E-07 65.7 16.5 116 1194-1313 110-243 (307)
47 COG2706 3-carboxymuconate cycl 96.6 1.2 2.5E-05 52.4 27.1 133 1432-1576 147-293 (346)
48 PF03022 MRJP: Major royal jel 96.2 0.062 1.3E-06 63.3 14.5 156 1409-1576 44-236 (287)
49 PF07995 GSDH: Glucose / Sorbo 96.1 0.057 1.2E-06 65.2 13.9 123 1428-1552 47-203 (331)
50 PRK02889 tolB translocation pr 96.0 2.5 5.5E-05 53.0 28.1 121 1434-1569 288-411 (427)
51 PRK04792 tolB translocation pr 96.0 0.94 2E-05 57.2 24.1 124 1432-1570 308-434 (448)
52 TIGR03606 non_repeat_PQQ dehyd 95.9 0.23 4.9E-06 61.7 17.6 118 1429-1552 78-251 (454)
53 PRK05137 tolB translocation pr 95.9 2.6 5.7E-05 53.0 27.9 121 1434-1569 294-420 (435)
54 TIGR02604 Piru_Ver_Nterm putat 95.9 0.078 1.7E-06 65.0 13.7 131 1429-1576 13-186 (367)
55 KOG1219|consensus 95.9 0.16 3.5E-06 69.9 16.7 49 1334-1387 3923-3973(4289)
56 PF12662 cEGF: Complement Clr- 95.8 0.0053 1.2E-07 43.0 1.8 24 1334-1358 1-24 (24)
57 PF12662 cEGF: Complement Clr- 95.7 0.0077 1.7E-07 42.2 2.1 24 1376-1400 1-24 (24)
58 PRK04922 tolB translocation pr 95.6 3 6.6E-05 52.4 26.8 123 1433-1570 295-420 (433)
59 TIGR02800 propeller_TolB tol-p 95.6 2.8 6E-05 52.2 26.4 120 1436-1570 284-406 (417)
60 PRK03629 tolB translocation pr 95.5 4.8 0.0001 50.6 27.8 124 1432-1570 289-415 (429)
61 PF03088 Str_synth: Strictosid 95.5 0.035 7.7E-07 52.8 6.6 83 1-87 3-88 (89)
62 smart00179 EGF_CA Calcium-bind 95.5 0.011 2.3E-07 46.9 2.7 31 1076-1108 1-33 (39)
63 PRK00178 tolB translocation pr 95.4 2 4.4E-05 53.8 24.4 122 1433-1569 290-414 (430)
64 COG3204 Uncharacterized protei 95.4 1.3 2.8E-05 50.9 19.3 109 1430-1548 181-301 (316)
65 PRK04792 tolB translocation pr 95.3 2.6 5.6E-05 53.3 24.3 81 1175-1258 198-279 (448)
66 TIGR03606 non_repeat_PQQ dehyd 95.2 0.43 9.2E-06 59.3 16.6 122 1425-1549 25-164 (454)
67 KOG4260|consensus 95.2 0.0089 1.9E-07 65.8 1.8 40 1070-1110 229-270 (350)
68 COG2133 Glucose/sorbosone dehy 95.1 2.6 5.7E-05 51.4 22.2 128 1427-1562 236-398 (399)
69 cd01475 vWA_Matrilin VWA_Matri 94.9 0.018 3.8E-07 65.5 3.2 41 1350-1390 181-221 (224)
70 TIGR02658 TTQ_MADH_Hv methylam 94.9 12 0.00027 45.3 31.8 98 1175-1275 27-140 (352)
71 PF12947 EGF_3: EGF domain; I 94.8 0.011 2.5E-07 46.0 1.0 28 1084-1111 4-33 (36)
72 cd01475 vWA_Matrilin VWA_Matri 94.8 0.021 4.5E-07 65.0 3.5 37 1076-1113 186-222 (224)
73 KOG1520|consensus 94.6 0.21 4.5E-06 59.3 11.0 112 1442-1562 76-195 (376)
74 KOG2397|consensus 94.5 0.045 9.8E-07 66.0 5.1 68 303-374 44-115 (480)
75 PRK04043 tolB translocation pr 94.4 8 0.00017 48.3 25.0 61 1174-1235 168-230 (419)
76 KOG3509|consensus 94.2 0.052 1.1E-06 71.5 5.4 105 517-623 2-111 (964)
77 PF12947 EGF_3: EGF domain; I 93.9 0.026 5.7E-07 44.1 1.1 29 1359-1387 1-31 (36)
78 COG4946 Uncharacterized protei 93.8 21 0.00045 43.5 27.2 85 1478-1569 399-485 (668)
79 smart00179 EGF_CA Calcium-bind 93.7 0.057 1.2E-06 42.6 2.8 30 1356-1386 2-33 (39)
80 KOG2397|consensus 93.6 0.053 1.1E-06 65.4 3.5 68 552-621 43-115 (480)
81 PRK04922 tolB translocation pr 93.6 9.1 0.0002 48.1 23.8 81 1175-1258 184-265 (433)
82 PRK03629 tolB translocation pr 93.5 12 0.00026 47.0 24.7 83 1174-1259 178-261 (429)
83 smart00181 EGF Epidermal growt 93.5 0.057 1.2E-06 41.7 2.5 25 1086-1110 6-31 (35)
84 PRK00178 tolB translocation pr 93.4 13 0.00028 46.7 24.7 81 1175-1258 179-260 (430)
85 cd00054 EGF_CA Calcium-binding 93.3 0.068 1.5E-06 41.7 2.7 31 1077-1109 2-34 (38)
86 KOG3509|consensus 93.3 0.073 1.6E-06 70.2 4.3 107 680-786 3-111 (964)
87 PF02333 Phytase: Phytase; In 92.5 4 8.7E-05 49.5 17.2 84 1478-1568 153-247 (381)
88 PF01436 NHL: NHL repeat; Int 92.5 0.24 5.2E-06 36.4 4.3 27 1240-1267 1-27 (28)
89 PRK02889 tolB translocation pr 92.4 21 0.00047 44.7 24.5 60 1174-1233 175-235 (427)
90 PRK01029 tolB translocation pr 92.2 40 0.00087 42.3 26.6 83 1174-1259 164-249 (428)
91 smart00181 EGF Epidermal growt 92.2 0.12 2.6E-06 39.9 2.6 25 1364-1388 6-31 (35)
92 KOG4499|consensus 91.9 0.92 2E-05 50.1 9.7 94 1223-1319 143-247 (310)
93 KOG4260|consensus 90.9 0.12 2.6E-06 57.3 1.9 46 1339-1387 222-269 (350)
94 KOG4499|consensus 90.6 1.8 4E-05 47.8 10.3 79 1430-1517 158-241 (310)
95 PF01436 NHL: NHL repeat; Int 90.4 0.52 1.1E-05 34.7 4.2 27 1529-1557 1-27 (28)
96 cd00054 EGF_CA Calcium-binding 89.7 0.3 6.5E-06 38.0 2.8 31 1356-1387 2-34 (38)
97 PRK01742 tolB translocation pr 88.7 76 0.0016 39.9 25.3 81 1175-1258 184-265 (429)
98 cd00053 EGF Epidermal growth f 88.7 0.38 8.2E-06 36.8 2.6 25 1086-1110 6-32 (36)
99 cd00053 EGF Epidermal growth f 88.6 0.38 8.2E-06 36.8 2.6 25 1364-1388 6-32 (36)
100 TIGR02800 propeller_TolB tol-p 87.9 11 0.00025 46.8 16.6 125 1431-1569 191-318 (417)
101 PRK05137 tolB translocation pr 87.8 11 0.00023 47.6 16.4 129 1428-1570 200-331 (435)
102 PF00008 EGF: EGF-like domain 87.7 0.36 7.8E-06 36.7 1.8 25 1086-1110 4-31 (32)
103 PRK01029 tolB translocation pr 87.4 90 0.002 39.2 28.8 126 1434-1571 285-413 (428)
104 KOG4289|consensus 87.3 26 0.00056 47.9 18.7 31 1077-1110 1239-1271(2531)
105 COG3204 Uncharacterized protei 86.9 7.1 0.00015 45.1 12.2 119 1429-1562 85-213 (316)
106 PF05096 Glu_cyclase_2: Glutam 85.2 57 0.0012 37.8 18.5 73 1242-1315 46-120 (264)
107 KOG1219|consensus 85.0 2.8 6.2E-05 58.8 9.0 57 1326-1388 3878-3935(4289)
108 PF02333 Phytase: Phytase; In 84.3 30 0.00066 42.2 16.6 114 1430-1552 156-282 (381)
109 PRK01742 tolB translocation pr 84.2 27 0.00058 43.9 17.3 125 1430-1568 204-331 (429)
110 PF13449 Phytase-like: Esteras 84.0 5.3 0.00012 48.2 10.4 67 1482-1549 86-166 (326)
111 PF00008 EGF: EGF-like domain 83.8 0.72 1.6E-05 35.1 1.8 21 1368-1388 10-31 (32)
112 KOG4649|consensus 82.3 98 0.0021 35.4 20.3 97 1434-1547 201-297 (354)
113 PF02239 Cytochrom_D1: Cytochr 81.9 46 0.001 40.9 17.5 153 1409-1570 57-211 (369)
114 COG4247 Phy 3-phytase (myo-ino 81.7 34 0.00074 38.6 14.1 77 1478-1561 150-234 (364)
115 PRK02888 nitrous-oxide reducta 79.9 1.6E+02 0.0036 38.3 21.3 76 1479-1562 319-405 (635)
116 KOG4289|consensus 78.9 1.3 2.9E-05 59.1 2.8 50 1334-1388 1221-1271(2531)
117 COG2133 Glucose/sorbosone dehy 76.6 24 0.00052 43.3 12.3 136 1177-1312 221-396 (399)
118 PF01731 Arylesterase: Arylest 75.3 8.2 0.00018 36.8 6.3 32 1238-1269 51-82 (86)
119 PF01731 Arylesterase: Arylest 73.7 6.4 0.00014 37.5 5.2 42 39-83 40-81 (86)
120 COG4257 Vgb Streptogramin lyas 73.3 1.8E+02 0.004 33.6 20.4 120 1191-1316 100-221 (353)
121 KOG0273|consensus 71.2 56 0.0012 40.1 13.2 118 1410-1544 257-374 (524)
122 PF13449 Phytase-like: Esteras 71.0 17 0.00036 44.0 9.3 87 1480-1568 19-127 (326)
123 KOG2106|consensus 69.0 78 0.0017 39.2 13.8 145 1168-1318 342-494 (626)
124 cd00200 WD40 WD40 domain, foun 65.7 1.5E+02 0.0032 33.1 15.6 101 1430-1547 136-236 (289)
125 PF09064 Tme5_EGF_like: Thromb 65.1 6.5 0.00014 30.1 2.5 27 1364-1391 6-32 (34)
126 PF02239 Cytochrom_D1: Cytochr 65.0 3.4E+02 0.0073 33.4 28.5 98 1170-1274 11-111 (369)
127 PF05787 DUF839: Bacterial pro 62.2 60 0.0013 41.8 12.2 70 1428-1498 348-452 (524)
128 KOG1217|consensus 61.3 6.8 0.00015 49.5 3.7 61 1324-1389 243-305 (487)
129 COG3823 Glutamine cyclotransfe 60.4 2.8E+02 0.0061 31.0 14.8 66 1244-1314 49-120 (262)
130 TIGR03118 PEPCTERM_chp_1 conse 59.7 45 0.00098 39.1 9.2 119 1438-1561 148-279 (336)
131 TIGR03118 PEPCTERM_chp_1 conse 54.1 2.2E+02 0.0048 33.7 13.4 133 1167-1302 35-206 (336)
132 COG4257 Vgb Streptogramin lyas 53.1 3.2E+02 0.007 31.8 14.2 36 1284-1319 61-97 (353)
133 PF00930 DPPIV_N: Dipeptidyl p 53.0 2.2E+02 0.0048 34.6 14.7 77 1490-1570 245-325 (353)
134 PF06247 Plasmod_Pvs28: Plasmo 52.9 13 0.00028 40.0 3.4 60 1333-1397 18-87 (197)
135 COG0823 TolB Periplasmic compo 52.9 5.7E+02 0.012 32.2 20.2 123 1435-1571 287-412 (425)
136 cd00200 WD40 WD40 domain, foun 51.9 3.7E+02 0.0081 29.8 27.6 102 1430-1547 178-279 (289)
137 PF12661 hEGF: Human growth fa 51.7 8.1 0.00018 23.3 0.9 11 1378-1388 1-11 (13)
138 COG0823 TolB Periplasmic compo 50.7 1.6E+02 0.0034 37.1 12.9 101 1453-1571 219-324 (425)
139 KOG2055|consensus 50.6 5.9E+02 0.013 31.7 20.5 31 1527-1557 480-510 (514)
140 PF05096 Glu_cyclase_2: Glutam 49.7 2.1E+02 0.0046 33.2 12.6 66 1488-1560 180-260 (264)
141 PF05787 DUF839: Bacterial pro 48.9 60 0.0013 41.8 9.1 75 1477-1552 346-457 (524)
142 PF09064 Tme5_EGF_like: Thromb 48.7 14 0.00029 28.5 1.9 25 1087-1112 7-31 (34)
143 COG4946 Uncharacterized protei 46.0 2E+02 0.0044 35.5 11.9 290 1209-1550 195-509 (668)
144 TIGR02276 beta_rpt_yvtn 40-res 42.8 95 0.0021 24.4 6.3 40 1492-1538 3-42 (42)
145 COG3823 Glutamine cyclotransfe 42.5 2.4E+02 0.0051 31.5 10.7 35 1527-1562 226-260 (262)
146 COG4247 Phy 3-phytase (myo-ino 41.8 4E+02 0.0087 30.6 12.6 71 1429-1501 152-225 (364)
147 PF14583 Pectate_lyase22: Olig 37.3 2.1E+02 0.0046 35.1 10.6 155 1410-1568 60-231 (386)
148 PF06433 Me-amine-dh_H: Methyl 34.7 3.9E+02 0.0085 32.3 12.1 173 1385-1576 100-290 (342)
149 KOG0266|consensus 34.7 5.6E+02 0.012 32.4 14.7 104 1427-1548 244-352 (456)
150 TIGR03075 PQQ_enz_alc_DH PQQ-d 34.0 2E+02 0.0043 37.3 10.5 91 1199-1310 238-340 (527)
151 KOG0315|consensus 32.2 4.1E+02 0.0089 30.5 10.8 126 1403-1545 54-183 (311)
152 PRK02888 nitrous-oxide reducta 31.6 3.8E+02 0.0081 35.1 12.0 113 1195-1314 235-352 (635)
153 KOG4649|consensus 31.3 8.8E+02 0.019 28.1 13.2 19 1436-1454 37-55 (354)
154 KOG1407|consensus 31.2 7E+02 0.015 28.9 12.5 52 1485-1543 152-203 (313)
155 KOG1274|consensus 29.7 9E+02 0.02 32.7 14.8 90 1444-1548 68-157 (933)
156 TIGR02276 beta_rpt_yvtn 40-res 28.8 1.4E+02 0.003 23.5 5.2 40 1251-1292 2-41 (42)
157 KOG0649|consensus 26.9 9.1E+02 0.02 27.7 12.3 120 1429-1569 114-243 (325)
158 PTZ00421 coronin; Provisional 26.8 1.4E+03 0.03 29.4 16.2 104 1429-1540 75-179 (493)
159 TIGR03032 conserved hypothetic 26.6 1.9E+02 0.0042 34.3 7.6 62 1474-1547 196-258 (335)
160 PF00930 DPPIV_N: Dipeptidyl p 26.5 5.7E+02 0.012 31.1 12.4 94 1196-1295 236-338 (353)
161 TIGR03032 conserved hypothetic 26.1 3.7E+02 0.008 32.1 9.7 51 1438-1499 209-259 (335)
162 KOG1217|consensus 25.6 60 0.0013 40.9 3.8 52 1334-1389 151-204 (487)
163 PF13360 PQQ_2: PQQ-like domai 25.5 4.6E+02 0.0099 29.3 10.7 60 1252-1316 173-233 (238)
164 PF02897 Peptidase_S9_N: Proly 23.9 8.4E+02 0.018 30.1 13.5 120 1439-1569 285-412 (414)
165 PF14583 Pectate_lyase22: Olig 23.8 8.6E+02 0.019 30.0 12.6 81 1485-1572 85-187 (386)
166 KOG0318|consensus 21.2 1.2E+03 0.025 29.8 12.8 55 1401-1456 291-346 (603)
167 KOG0285|consensus 20.9 3.3E+02 0.0071 32.7 7.9 113 1428-1556 150-262 (460)
168 KOG1225|consensus 20.8 2.9E+02 0.0063 35.4 8.2 33 820-855 299-332 (525)
No 1
>KOG1215|consensus
Probab=100.00 E-value=1.4e-49 Score=533.12 Aligned_cols=759 Identities=26% Similarity=0.430 Sum_probs=541.3
Q ss_pred CCCCCcccccCCceecccccCCCCCCCCCCCCCcccCcce---------------------eeccCc---ceeeeeeeec
Q psy948 750 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQ---------------------CKCVTM---TRIVQMEVMK 805 (1576)
Q Consensus 750 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~dgsDE~~C~~~~---------------------c~~~~~---~~~~~~~~~~ 805 (1576)
.....+|++.||.+|+..|.+....|+....+|..+.... ....+. ....+-...
T Consensus 30 ~~~~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~~l~~~~~~~y~~d~~v~~~~~~sg~~~~~~~~~~~~- 108 (877)
T KOG1215|consen 30 ILEKEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRRALTLFEDGLYWTDKSVSAANKKTGKDVTRLSQDSHF- 108 (877)
T ss_pred EeeccceeCCCcceecchhheeeeccccCCceEEeccCCccceeeeeeccceeeccchhhhhccCCCCcceeehhcCCC-
Confidence 3566899999999999999999999999999987765321 000000 011111111
Q ss_pred ccccCCcccccCCCCCCCCCCCc-ccCCccCCCCccccC--CCcccCceeecCCCCCCCCCccCCCeee----cC--CCc
Q psy948 806 WNAAASNWRCDHDEDCTDGSDET-ECGGFQCKNGTFQCS--SGHCIAAYFRCDGDRDCRDLSELNGTFQ----CS--SGH 876 (1576)
Q Consensus 806 ~~c~~~~~~Cdg~~dC~dgsDE~-~C~~~~C~~~~f~C~--~g~Ci~~~~~Cdg~~dC~d~sde~~~f~----C~--~g~ 876 (1576)
+ .....|...+...+.+++++. ++....|...+|+|. +++|||..|+||+..+|.|++||...+. +. .-+
T Consensus 109 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~ 187 (877)
T KOG1215|consen 109 P-LDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLD 187 (877)
T ss_pred C-cceeEEecCCCCCCCCcccccCCCCCccccCCCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCccccccc
Confidence 1 223778899999999999995 445567888999999 8899999999999999999999853321 11 123
Q ss_pred eecceeeeCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCceeccCccccCCCCCCCCCCCCcCcCCCCccCCCCe
Q psy948 877 CIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHK 956 (1576)
Q Consensus 877 Ci~~~~~Cdg~~dC~d~sDE~~C~~~~~~~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~DC~DgsDE~~~~C~~~~C~~~~~ 956 (1576)
||...++||+..+|.+++||..+....+... ....++|.++..||..++.|||..||.+++||.-..|....|. ..+
T Consensus 188 ~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~--~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~-~~e 264 (877)
T KOG1215|consen 188 CIVAIKVCDIQHDCADDYDESEGRIYWTDDS--RIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCE-APE 264 (877)
T ss_pred cceeeeecCcccccccccccccCcccccCCc--ceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccC-Ccc
Confidence 4889999999999999999998865321100 1357899988899999999999999999999964445555553 468
Q ss_pred eecCCCceecCceecCCCcCCCCCCCCCCcccccccccccCCCCCCceeeCCCceeccCcccCCcCCCCCCCcccCCCCC
Q psy948 957 YQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKE 1036 (1576)
Q Consensus 957 f~C~ng~Ci~~~~~CdG~~dC~DgsDE~~~~~c~~~~~~~~C~~~~~f~C~~g~Ci~~~~~Cd~~~dC~dgsDE~~C~~~ 1036 (1576)
+.|.++.|++..++|+|..+|.+|+||..+.. . ..+ ...|.|.+++ |....+|++.-.++.+.-.......
T Consensus 265 ~~~~~~~~~~~~~~~~g~~d~pdg~de~~~~~---~---~~~--~~~~d~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~ 335 (877)
T KOG1215|consen 265 IECADGDCSDRQKLCDGDLDCPDGLDEDYCKK---K---LYW--SMNVDGSGRR-ILLSKLCHGYWTDGLNECAERVLKC 335 (877)
T ss_pred eeecCCCCccceEEecCccCCCCccccccccc---c---eee--eeecccCCce-eeecccCccccccccccchhhcccc
Confidence 99999999999999999999999999985421 0 011 3467888888 9988888651111111100000000
Q ss_pred CCCCCCC--CeeecCCceeccccccCCCCCCCCCCCCCCcccCccccccCCCcccccce-eCCCeeeeecCCCcccCCCC
Q psy948 1037 NSTCSSS--QFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCV-DTLTGYYCECNTGYNDDDIG 1113 (1576)
Q Consensus 1037 ~~~C~~~--~~~C~nG~Ci~~~~~C~~~~~C~D~sDe~~~cdidEC~~~~~~~Csq~C~-Nt~Gsy~C~C~~Gy~l~~~~ 1113 (1576)
.+.+... ...| .|......+..... +.+.|.. .++.|+|+|+ +.+++|+|.|..||.+...+
T Consensus 336 ~~~~~~~~v~~~~---~~~~~~~~~~~~~~-----------~~~~~~~-~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~ 400 (877)
T KOG1215|consen 336 SHKCPDVSVGPRC---DCMGAKVLPLGART-----------DSNPCES-DNGGCSQLCVPNSPGTFKCACSPGYELRLDK 400 (877)
T ss_pred cCCCCccccCCcc---cCCccceecccccc-----------cCCcccc-cCCccceeccCCCCCceeEecCCCcEeccCC
Confidence 0001000 0000 01111111111110 1234443 5899999999 67999999999999997666
Q ss_pred ccc---CCCCceeecceeEEee--------------------Ee-eccceEEEEeeeecc-------Cce-ee-------
Q psy948 1114 TVS---PSSNKVLTRSTVIYHV--------------------RI-WSSNVLVMADVYSTR-------GSV-ME------- 1154 (1576)
Q Consensus 1114 ~~~---~~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~d~~~~~-------~~~-~~------- 1154 (1576)
+.. .....++++...+..+ .. ...+.++|+|+.... +.. ..
T Consensus 401 c~~~~~~~~~l~~s~~~~ir~~~~~~~~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~ 480 (877)
T KOG1215|consen 401 CEASDQPEAFLLFSNRHDIRRISLDCSDVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLC 480 (877)
T ss_pred ceecCCCCcEEEEecCccceecccCCCcceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCcc
Confidence 211 1222223322211111 11 123477888763221 110 00
Q ss_pred -cceEEEEeeecceeEEecCCCeEEEEeccCCceEecc-cccCCcceEEEeCCcceEEEecCCCcCeEEEEecCCCCcEE
Q psy948 1155 -NRTVKMEVTKIPLCALDVRSIKLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR 1232 (1576)
Q Consensus 1155 -~~~~~~~~~~~~~~avD~~~~~I~v~~ldG~~r~~l~-~~l~~P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~ 1232 (1576)
...+..++....+||.|.....|+|+.++|+.|++|+ ..+..||+|||+|..|+|||+||+..++|+|+.|||+.+++
T Consensus 481 ~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~ 560 (877)
T KOG1215|consen 481 IPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAV 560 (877)
T ss_pred ccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceE
Confidence 1223445556677888888899999999999998886 45699999999999999999999988899999999999999
Q ss_pred EEeccCCCCCcceEEEeccCCeEEEEcCCCC-eEEEEeCCCCceEEEEeCCCccceeEEeeeCCeEEEeccCCCcceeec
Q psy948 1233 ILTHEDDIAWPNALTLDYFTERLYWADAHLD-YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 1311 (1576)
Q Consensus 1233 iv~~~~~l~~P~gLaiD~~~~rlYw~D~~~~-~I~s~~~dG~~r~~v~~~~~~~~P~~lavfed~lYwtd~~~~~i~~~~ 1311 (1576)
++.. .+.||+||++|+.+.++||+|.++. .|++++++|++|+ +.....++|||++++|++++||++|....+.+++
T Consensus 561 l~~~--~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~-~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~ 637 (877)
T KOG1215|consen 561 LVTN--GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR-VVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAE 637 (877)
T ss_pred EEeC--CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE-EeccccCCCceEEEEecceeEEeeccccceEeee
Confidence 9984 4999999999999999999999999 8999999999999 5556779999999999999999999999999999
Q ss_pred cccccccccceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCCCceEEEcCCCcEecCCC
Q psy948 1312 KFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGL 1391 (1576)
Q Consensus 1312 k~~~~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~ 1391 (1576)
+..+.. .... ...... +....+...+..+....|+|+.+|++|+|+|++.+...+|+||.|+.|..+.
T Consensus 638 ~~~~~~-~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~~~~c~c~~~~~l~~~~ 705 (877)
T KOG1215|consen 638 KHKGSD-SRTS-RSNLAQ----------PLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQGSTCACPEGYRLSPDG 705 (877)
T ss_pred cccCCc-ceee-ecccCc----------ccceEEEeccccCCCCCCcccccCCCCCeeeecCCCCCeeeCCCCCeecCCC
Confidence 988866 2111 111110 1111222223455677899998899999999999987799999999998554
Q ss_pred CCceeccCCceEEEEecCCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecc
Q psy948 1392 SGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGF 1471 (1576)
Q Consensus 1392 ~~~C~~~~~~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~ 1471 (1576)
. +|.. ...+++++....|..+.+............. +..++.++|++.......+...+......
T Consensus 706 ~-~C~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 770 (877)
T KOG1215|consen 706 K-SCSS--PEGYLLITSRTGIPCISLDSELSPDQPLEDG-------DTIDRLEYWTDVRVGVAAVSSQNCAPGYD----- 770 (877)
T ss_pred C-eecC--cccccccccccccceeecCcccCCCcccCCC-------cccccceecccccceeeEEEecCCCCccc-----
Confidence 4 6876 3446677777777777665443222211111 77888999998887777666555443322
Q ss_pred cceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCC------ceEEEeeCCCCCceEEEEecCCCeEE
Q psy948 1472 GQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGR------YRRSLVSENLESPSSIALDPTLGKMF 1545 (1576)
Q Consensus 1472 ~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~------~~~~lv~~~l~~P~~IavDp~~G~LY 1545 (1576)
++......++++|++|....|||+... ...|.|..+++. ....+....+..|+++.+.|..+++|
T Consensus 771 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (877)
T KOG1215|consen 771 ---LVGEGEPPPEGSAVDEAEDTLYWTCSA------TSFIEVSGLDGERKCRRRPEGVVDFDNPVPPRTTGVEPEKSLLF 841 (877)
T ss_pred ---cccccCCCCCCceeehhhcceEEEeec------ccEEEEEEEeeecccccccccccccCCCCCCcceeeccccceec
Confidence 233456789999999999999999875 578999988884 22334446788899999999999999
Q ss_pred EEecCCCCcEEEeecCCCCcEEEEecCCCCC
Q psy948 1546 WAETGASPRIESAWMDGSHRSATQISNRQAP 1576 (1576)
Q Consensus 1546 WTD~g~~~~Iera~mDGs~r~~i~~~~~~~P 1576 (1576)
||+|...++|.|+.++|+++..++.+.+..|
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (877)
T KOG1215|consen 842 WTNWEPGPKIPRSALDGSERLVLFKSLLSCP 872 (877)
T ss_pred cCCccccceeeecccccccccceeccCCCCc
Confidence 9999777899999999999999998877665
No 2
>KOG1214|consensus
Probab=100.00 E-value=1.9e-36 Score=357.60 Aligned_cols=227 Identities=31% Similarity=0.618 Sum_probs=188.5
Q ss_pred cCCCcceeeccCCceeccCCCccccCCCCccCCCCcc--ccccccCCCceEEEcCCCcEecCCCC---------------
Q psy948 1330 TGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHC--SQVCTNLNGTYACSCNAGFTLSDGLS--------------- 1392 (1576)
Q Consensus 1330 ~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~C--s~lC~n~~gsy~C~Cp~G~~l~d~~~--------------- 1392 (1576)
.|++.|+|.|.+||..+ +..|.+++||. +..| ...|+|++|+|+|+|.+||.+. |.+
T Consensus 804 hGgs~y~C~CLPGfsGD---G~~c~dvDeC~--psrChp~A~CyntpgsfsC~C~pGy~GD-Gf~CVP~~~~~T~C~~er 877 (1289)
T KOG1214|consen 804 HGGSTYSCACLPGFSGD---GHQCTDVDECS--PSRCHPAATCYNTPGSFSCRCQPGYYGD-GFQCVPDTSSLTPCEQER 877 (1289)
T ss_pred cCCceEEEeecCCccCC---ccccccccccC--ccccCCCceEecCCCcceeecccCccCC-CceecCCCccCCcccccc
Confidence 35567999999999864 78899999998 4667 5689999999999999999872 220
Q ss_pred ------------------------------------------------------------C---c--eecc---------
Q psy948 1393 ------------------------------------------------------------G---V--CKAN--------- 1398 (1576)
Q Consensus 1393 ------------------------------------------------------------~---~--C~~~--------- 1398 (1576)
+ . |.+.
T Consensus 878 ~hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~~~vp~Cd~hgh~ap~qchG~~~~CwCvd~dGrev~gtr 957 (1289)
T KOG1214|consen 878 FHPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEQYVPQCDDHGHFAPLQCHGKSDFCWCVDKDGREVQGTR 957 (1289)
T ss_pred ccceeeccccceeEeeCCCcccCCCCCCCCCCCCCCCCCcccccCCCccccccccccccCCCcceeEEecCCCcCccccc
Confidence 0 0 0000
Q ss_pred ------------------------------CCceEEEEecCCceeeeccccccccc------cccccccceeeecccCCc
Q psy948 1399 ------------------------------DNKLTIVYSNGPEIRAYETHKRRFRD------VISDERRIEALDIDPVDE 1442 (1576)
Q Consensus 1399 ------------------------------~~~~~ll~s~~~~Ir~i~~~~~~~~~------~v~~~~~i~ald~D~~~~ 1442 (1576)
...-+||++....|..+++.+..+.. +....+.|++||||-++.
T Consensus 958 ~~pg~tp~CiptvApp~v~np~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~ 1037 (1289)
T KOG1214|consen 958 SQPGTTPACIPTVAPPMVRNPTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRER 1037 (1289)
T ss_pred cCCCCCCCccCCCCCCcccCCCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccc
Confidence 00125788888888887776553322 334556789999999999
Q ss_pred EEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceE
Q psy948 1443 IIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRR 1522 (1576)
Q Consensus 1443 ~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~ 1522 (1576)
+|||+|+...+|.|+.|.|....+++ -.++.+|+||||||+.||+||||+. ..+|+|+.|||+.||
T Consensus 1038 mvyWtDv~g~SI~rasL~G~Ep~ti~--------n~~L~SPEGiAVDh~~Rn~ywtDS~------lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1038 MVYWTDVAGRSISRASLEGAEPETIV--------NSGLISPEGIAVDHIRRNMYWTDSV------LDKIEVALLDGSERK 1103 (1289)
T ss_pred eEEEeecCCCccccccccCCCCceee--------cccCCCccceeeeeccceeeeeccc------cchhheeecCCceee
Confidence 99999999999999999988876654 2457899999999999999999986 688999999999999
Q ss_pred EEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEEecCCCCC
Q psy948 1523 SLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQISNRQAP 1576 (1576)
Q Consensus 1523 ~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~~~~~~~P 1576 (1576)
+|+.++|-+||+|+|||.+|.|||||| ..+|+||++.|||+||++|+.++|..|
T Consensus 1104 vLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLP 1158 (1289)
T KOG1214|consen 1104 VLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLP 1158 (1289)
T ss_pred EEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCC
Confidence 999999999999999999999999999 568999999999999999999999877
No 3
>KOG1214|consensus
Probab=100.00 E-value=8.7e-36 Score=351.97 Aligned_cols=211 Identities=26% Similarity=0.472 Sum_probs=179.8
Q ss_pred EEEEeeecceeEEecCCCeEEEEeccCCceEecc-cccCCcceEEEeCCcceEEEecCCC-cCeEEEEecCCCCcEEEEe
Q psy948 1158 VKMEVTKIPLCALDVRSIKLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILT 1235 (1576)
Q Consensus 1158 ~~~~~~~~~~~avD~~~~~I~v~~ldG~~r~~l~-~~l~~P~~iavdP~~g~lywtd~g~-~~~I~ra~mdGs~~~~iv~ 1235 (1576)
+.+++...++||+|+...+|+|+.|||+.|++|+ ++|.+||+|+|||.+|.||||||.. +|+|+++.|||.||+.+|.
T Consensus 1073 iAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1073 IAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN 1152 (1289)
T ss_pred eeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee
Confidence 4455566678888889999999999999999995 7899999999999999999999975 5999999999999988776
Q ss_pred ccCCCCCcceEEEeccCCeEEEEcCCCCeEEEEeCCCCceEEEEeCCCccceeEEeeeCCeEEEeccCCCcceeeccccc
Q psy948 1236 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNA 1315 (1576)
Q Consensus 1236 ~~~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG~~r~~v~~~~~~~~P~~lavfed~lYwtd~~~~~i~~~~k~~~ 1315 (1576)
++|+.||||++|...+.|.|+|+..++++...++|..|++++++ |+.||+|+.+++.+|||||..+.|..++|+.+
T Consensus 1153 --~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~--LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1153 --TDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNN--LQYPFSITSYADHFYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred --cccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhc--ccCceeeeeccccceeeccccCceEEeecccc
Confidence 68999999999999999999999999999999999999999864 89999999999999999999999999999998
Q ss_pred cccccceecccccccCCCcceeeccCCceeccCCCccc-cCCCCccCCCCccccccccCCCceEEEcCCCcE
Q psy948 1316 REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKC-LDVDECATGIHHCSQVCTNLNGTYACSCNAGFT 1386 (1576)
Q Consensus 1316 ~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c-~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~ 1386 (1576)
+.....+.+.-..+.|. ..+ .+.| ...++|+++|++|+|||+.+-.+..|.||....
T Consensus 1229 ~~td~~~p~~~s~lyGI-----------tav---~~~Cp~gstpCSedNGGCqHLCLpgqngavcecpdnvk 1286 (1289)
T KOG1214|consen 1229 QFTDEYLPEQRSHLYGI-----------TAV---YPYCPTGSTPCSEDNGGCQHLCLPGQNGAVCECPDNVK 1286 (1289)
T ss_pred ccccccccccccceEEE-----------Eec---cccCCCCCCcccccCCcceeecccCcCCccccCCccce
Confidence 76554333322222221 111 2334 345899999999999999998899999998654
No 4
>KOG1215|consensus
Probab=100.00 E-value=4.1e-34 Score=384.03 Aligned_cols=452 Identities=30% Similarity=0.508 Sum_probs=354.0
Q ss_pred ccCccccCCCCCCCCCCCCcCcCCCCccCCCCeeecC--CCceecCceecCCCcCCCCCCCCCCcccccccccccCCCCC
Q psy948 924 EQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCD--NGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELY 1001 (1576)
Q Consensus 924 ~~~~~Cdg~~DC~DgsDE~~~~C~~~~C~~~~~f~C~--ng~Ci~~~~~CdG~~dC~DgsDE~~~~~c~~~~~~~~C~~~ 1001 (1576)
...|+..+...+.+++++. ..+....|. +.+|+|. ++.|++..|+|||..+|++|+||..+. .. . ..+ ..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~-~~---~-~~~-~~ 183 (877)
T KOG1215|consen 112 IHAYHPSSQPLAPDPCAES-GNGPCSHCC-LDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCA-VR---R-CEP-RG 183 (877)
T ss_pred eeEEecCCCCCCCCccccc-CCCCCcccc-CCCCCCcCccccCCCCceeCCCCCccccchhhhccc-cc---c-cCc-cc
Confidence 3788899999999999886 222223332 4689998 889999999999999999999998753 11 1 111 11
Q ss_pred CceeeCCCceeccCcccCCcCCCCCCCcccCCCCCCCCCCCCCeeecCCceeccccccCCCCCCCCCCCCCCcccCcccc
Q psy948 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECA 1081 (1576)
Q Consensus 1002 ~~f~C~~g~Ci~~~~~Cd~~~dC~dgsDE~~C~~~~~~C~~~~~~C~nG~Ci~~~~~C~~~~~C~D~sDe~~~cdidEC~ 1081 (1576)
..|.| |...++||...+|.++.|+..+........
T Consensus 184 ~~~~~-----~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~---------------------------------------- 218 (877)
T KOG1215|consen 184 ASLDC-----IVAIKVCDIQHDCADDYDESEGRIYWTDDS---------------------------------------- 218 (877)
T ss_pred ccccc-----ceeeeecCcccccccccccccCcccccCCc----------------------------------------
Confidence 23444 888999999999999998865432110000
Q ss_pred ccCCCcccccceeCCCeeeeecCCCcccCCCCcccCCCCceeecceeEEeeEeeccceEEEEeeeeccCceeecceEEEE
Q psy948 1082 KVETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKME 1161 (1576)
Q Consensus 1082 ~~~~~~Csq~C~Nt~Gsy~C~C~~Gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 1161 (1576)
T Consensus 219 -------------------------------------------------------------------------------- 218 (877)
T KOG1215|consen 219 -------------------------------------------------------------------------------- 218 (877)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeecceeEEecCCCeEEEEeccCCceEec-ccccCCcceEEEeCCcceEEEecCCCc-CeEEEEecCCCCcEEEEeccCC
Q psy948 1162 VTKIPLCALDVRSIKLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQ-AYIGKIGMDGSNFTRILTHEDD 1239 (1576)
Q Consensus 1162 ~~~~~~~avD~~~~~I~v~~ldG~~r~~l-~~~l~~P~~iavdP~~g~lywtd~g~~-~~I~ra~mdGs~~~~iv~~~~~ 1239 (1576)
+|+++..+|+.+.+. ......|+.+++.|..|++||++|+.. +.|+.+.+++..+..+.. ..
T Consensus 219 --------------~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--g~ 282 (877)
T KOG1215|consen 219 --------------RIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCD--GD 282 (877)
T ss_pred --------------ceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEec--Cc
Confidence 123444555544443 355678889999999999999999865 899999999999887755 56
Q ss_pred CCCcceEEEeccCCeEEEEcCCCCeEEEEeCCCCceEEEEeCCCccceeEEeeeCCeEEEeccCCCcceeeccccccccc
Q psy948 1240 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNAREIQ 1319 (1576)
Q Consensus 1240 l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG~~r~~v~~~~~~~~P~~lavfed~lYwtd~~~~~i~~~~k~~~~~~~ 1319 (1576)
+.+|.|+++++....+|| ++++++.+++ |+. ..+.++ ||+++.+..+.++.+.....
T Consensus 283 ~d~pdg~de~~~~~~~~~---------~~~~d~~~~~-i~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~-- 339 (877)
T KOG1215|consen 283 LDCPDGLDEDYCKKKLYW---------SMNVDGSGRR-ILL-SKLCHG----------YWTDGLNECAERVLKCSHKC-- 339 (877)
T ss_pred cCCCCcccccccccceee---------eeecccCCce-eee-cccCcc----------ccccccccchhhcccccCCC--
Confidence 778999999999999999 8899999887 543 223443 69998888777766654432
Q ss_pred cceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccc-cCCCceEEEcCCCcEecCCCCCceecc
Q psy948 1320 AGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCT-NLNGTYACSCNAGFTLSDGLSGVCKAN 1398 (1576)
Q Consensus 1320 ~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~-n~~gsy~C~Cp~G~~l~d~~~~~C~~~ 1398 (1576)
..+.. +..|.|..++.+... +.+ +.++|...+++|+|+|+ +.+++|.|.|+.||.+...+ |...
T Consensus 340 -------~~~~v--~~~~~~~~~~~~~~~-~~~--~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~---c~~~ 404 (877)
T KOG1215|consen 340 -------PDVSV--GPRCDCMGAKVLPLG-ART--DSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK---CEAS 404 (877)
T ss_pred -------Ccccc--CCcccCCccceeccc-ccc--cCCcccccCCccceeccCCCCCceeEecCCCcEeccCC---ceec
Confidence 22222 267888888877532 222 55788888999999999 56999999999999997544 6443
Q ss_pred -CCceEEEEecCCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeee
Q psy948 1399 -DNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGI 1477 (1576)
Q Consensus 1399 -~~~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~ 1477 (1576)
....+++++++..|+++.+........+....++.++++|+.++.+||+|.....|.++.+.+..... +.-
T Consensus 405 ~~~~~~l~~s~~~~ir~~~~~~~~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~--------~~~ 476 (877)
T KOG1215|consen 405 DQPEAFLLFSNRHDIRRISLDCSDVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECE--------LCG 476 (877)
T ss_pred CCCCcEEEEecCccceecccCCCcceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccce--------Eec
Confidence 36789999999999999988764444455557899999999999999999999999999988765433 223
Q ss_pred eccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEecCCCCcEEE
Q psy948 1478 KSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIES 1557 (1576)
Q Consensus 1478 ~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g~~~~Ier 1557 (1576)
.++..|.|||+||+.+|+||+|.+ ...|+|..++|.++++|+...+..||+|||+|.+|+||||||+..++|+|
T Consensus 477 ~g~~~~~~lavD~~~~~~y~tDe~------~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~r 550 (877)
T KOG1215|consen 477 DGLCIPEGLAVDWIGDNIYWTDEG------NCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIER 550 (877)
T ss_pred cCccccCcEEEEeccCCceecccC------CceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhh
Confidence 456789999999999999999986 68999999999999999999999999999999999999999998789999
Q ss_pred eecCCCCcEEEEecCCCCC
Q psy948 1558 AWMDGSHRSATQISNRQAP 1576 (1576)
Q Consensus 1558 a~mDGs~r~~i~~~~~~~P 1576 (1576)
+.|||+.|++|+..++.||
T Consensus 551 a~~dg~~~~~l~~~~~~~p 569 (877)
T KOG1215|consen 551 ASLDGSERAVLVTNGILWP 569 (877)
T ss_pred hcCCCCCceEEEeCCccCC
Confidence 9999999999999988887
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.41 E-value=6e-11 Score=160.64 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=188.1
Q ss_pred ecccccCCcceEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEEEec-----------cCCCCCcceEEEeccCCeEEE
Q psy948 1189 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH-----------EDDIAWPNALTLDYFTERLYW 1257 (1576)
Q Consensus 1189 ~l~~~l~~P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~~-----------~~~l~~P~gLaiD~~~~rlYw 1257 (1576)
+|.+.|..|.+||+++..|.||++|.+. .+|.+.+++|.-...+... ...+..|.||++|..++.|||
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n-~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNH-NRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCC-CeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 5567789999999999999999999764 5888888888643332220 113568999999999999999
Q ss_pred EcCCCCeEEEEeCCCCceEEEEeC---------------CCccceeEEeee--CCeEEEeccCCCcceeecccccccccc
Q psy948 1258 ADAHLDYIASVDLDGKHKHIVISG---------------QKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNAREIQA 1320 (1576)
Q Consensus 1258 ~D~~~~~I~s~~~dG~~r~~v~~~---------------~~~~~P~~lavf--ed~lYwtd~~~~~i~~~~k~~~~~~~~ 1320 (1576)
+|...++|..+++.+...+++... ..+.+|++|++. ++.||++++.++.|.+.+..++....
T Consensus 641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~- 719 (1057)
T PLN02919 641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV- 719 (1057)
T ss_pred EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-
Confidence 999999999999987665555321 125689999986 57999999999888776643221000
Q ss_pred ceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCCCceEEEcCCCcEecCCCCCceeccCC
Q psy948 1321 GILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDN 1400 (1576)
Q Consensus 1321 ~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~~~~C~~~~~ 1400 (1576)
.. ..|+.......
T Consensus 720 ---------~~--------------------------------------------------G~G~~~~~~g~-------- 732 (1057)
T PLN02919 720 ---------FS--------------------------------------------------GDGYERNLNGS-------- 732 (1057)
T ss_pred ---------Ee--------------------------------------------------cCCccccCCCC--------
Confidence 00 00110000000
Q ss_pred ceEEEEecCCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccc-------
Q psy948 1401 KLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQ------- 1473 (1576)
Q Consensus 1401 ~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~------- 1473 (1576)
.........+.+|++++..++||++|...++|.+.++.+... .++.+...
T Consensus 733 ----------------------~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 733 ----------------------SGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLF 789 (1057)
T ss_pred ----------------------ccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccc
Confidence 000011234678888988888999999999998887664322 11111000
Q ss_pred ee-------eeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEee-------------CCCCCce
Q psy948 1474 DL-------GIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVS-------------ENLESPS 1533 (1576)
Q Consensus 1474 ~~-------~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~-------------~~l~~P~ 1533 (1576)
.+ ....+..|.|||+|. .++||.+|.. .++|.+.++++....++.. ..+..|.
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~ 862 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA 862 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeC-CCcEEEEECC------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence 00 001245799999995 5679999986 6899999998876666553 2356899
Q ss_pred EEEEecCCCeEEEEecCCCCcEEEeecCCCC
Q psy948 1534 SIALDPTLGKMFWAETGASPRIESAWMDGSH 1564 (1576)
Q Consensus 1534 ~IavDp~~G~LYWTD~g~~~~Iera~mDGs~ 1564 (1576)
+|++++ .|.||.+|.+.+ +|...+++...
T Consensus 863 GIavd~-dG~lyVaDt~Nn-~Irvid~~~~~ 891 (1057)
T PLN02919 863 GLALGE-NGRLFVADTNNS-LIRYLDLNKGE 891 (1057)
T ss_pred EEEEeC-CCCEEEEECCCC-EEEEEECCCCc
Confidence 999998 578999998766 89999887643
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.10 E-value=1.5e-08 Score=116.78 Aligned_cols=236 Identities=17% Similarity=0.226 Sum_probs=153.9
Q ss_pred cceEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCCeEEEEcCCCCeEEEEeCCCCceE
Q psy948 1197 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 1276 (1576)
Q Consensus 1197 P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG~~r~ 1276 (1576)
|-+++.++..|.|||+|.. ..+|.|...++...+.+ . +.-|+|++++...++||+++.....+. ++.....+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~-~~~i~~~~~~~~~~~~~-~----~~~~~G~~~~~~~g~l~v~~~~~~~~~--d~~~g~~~ 73 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIP-GGRIYRVDPDTGEVEVI-D----LPGPNGMAFDRPDGRLYVADSGGIAVV--DPDTGKVT 73 (246)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEETTTTEEEEE-E----SSSEEEEEEECTTSEEEEEETTCEEEE--ETTTTEEE
T ss_pred CcceEEECCCCEEEEEEcC-CCEEEEEECCCCeEEEE-e----cCCCceEEEEccCCEEEEEEcCceEEE--ecCCCcEE
Confidence 5688999999999999965 46899999988754333 2 222999999988899999998655444 76665555
Q ss_pred EEEeC---C-CccceeEEeee-CCeEEEeccCCCcceeeccccccccccceecccccccCCCcceeeccCCceeccCCCc
Q psy948 1277 IVISG---Q-KVPHVFALTLF-EDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAK 1351 (1576)
Q Consensus 1277 ~v~~~---~-~~~~P~~lavf-ed~lYwtd~~~~~i~~~~k~~~~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~ 1351 (1576)
++... . .+..|-.+++. .+.||+++..........
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~---------------------------------------- 113 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGID---------------------------------------- 113 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG----------------------------------------
T ss_pred EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccc----------------------------------------
Confidence 55532 2 45667777764 345676654321100000
Q ss_pred cccCCCCccCCCCccccccccCCCceEEEcCCCcEecCCCCCceeccCCceEEEEecCCceeeecccccccccccccccc
Q psy948 1352 KCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERR 1431 (1576)
Q Consensus 1352 ~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~~~~C~~~~~~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~ 1431 (1576)
. ..|+++... .....+......
T Consensus 114 -----------------------------------------------~----------g~v~~~~~~-~~~~~~~~~~~~ 135 (246)
T PF08450_consen 114 -----------------------------------------------P----------GSVYRIDPD-GKVTVVADGLGF 135 (246)
T ss_dssp -----------------------------------------------S----------EEEEEEETT-SEEEEEEEEESS
T ss_pred -----------------------------------------------c----------cceEEECCC-CeEEEEecCccc
Confidence 0 011111111 111222333456
Q ss_pred ceeeecccCCcEEEEeecccceeEEEeecccccceeeeccccee-eeec-cCCcceeeecCCCCeEEEeecCCCCCCCCC
Q psy948 1432 IEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDL-GIKS-IGKLTAIAVDWIAHNIYWTVSDRSGSKPKG 1509 (1576)
Q Consensus 1432 i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~-~~~~-~~~p~glAVDwv~~nLYWTD~~~~~~~~~~ 1509 (1576)
+.+|+|++..+.||+++...+.|++..++.... .+.. ...+ .+.. .+.|.|||||. .+|||.+... .+
T Consensus 136 pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~-~~~~--~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~------~~ 205 (246)
T PF08450_consen 136 PNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG-ELSN--RRVFIDFPGGPGYPDGLAVDS-DGNLWVADWG------GG 205 (246)
T ss_dssp EEEEEEETTSSEEEEEETTTTEEEEEEEETTTC-CEEE--EEEEEE-SSSSCEEEEEEEBT-TS-EEEEEET------TT
T ss_pred ccceEECCcchheeecccccceeEEEecccccc-ceee--eeeEEEcCCCCcCCCcceEcC-CCCEEEEEcC------CC
Confidence 789999999999999999999999998874332 1110 0011 1122 23599999995 7899999764 58
Q ss_pred eEEEEEcCCCceEEEeeCCCCCceEEEE-ecCCCeEEEEec
Q psy948 1510 KVMVAHNDGRYRRSLVSENLESPSSIAL-DPTLGKMFWAET 1549 (1576)
Q Consensus 1510 ~I~v~~ldG~~~~~lv~~~l~~P~~Iav-Dp~~G~LYWTD~ 1549 (1576)
+|.+.+.+|+....|-.. ..+|..+|+ -|..+.||.|..
T Consensus 206 ~I~~~~p~G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 206 RIVVFDPDGKLLREIELP-VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEETTSCEEEEEE-S-SSSEEEEEEESTTSSEEEEEEB
T ss_pred EEEEECCCccEEEEEcCC-CCCEEEEEEECCCCCEEEEEeC
Confidence 999999999876655534 679999999 577899999863
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=1.2e-08 Score=138.46 Aligned_cols=235 Identities=17% Similarity=0.200 Sum_probs=156.3
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCeEEEEeCCCCceEEEEe-C-----------CCccceeEEeee--CCeEEEeccC
Q psy948 1238 DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS-G-----------QKVPHVFALTLF--EDHIYWTDWN 1303 (1576)
Q Consensus 1238 ~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG~~r~~v~~-~-----------~~~~~P~~lavf--ed~lYwtd~~ 1303 (1576)
..+.+|.|||||..+++||++|...++|..++.+|.-...+.. + ..+.+|.+|++. ++.||++|..
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 4689999999999999999999999999999999876554443 1 135689999996 4679999999
Q ss_pred CCcceeeccccccccccceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCCCceEEEcCC
Q psy948 1304 TKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383 (1576)
Q Consensus 1304 ~~~i~~~~k~~~~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~ 1383 (1576)
++.|.+++..++..... .+. |. .
T Consensus 645 n~~Ir~id~~~~~V~tl---------ag~---------G~---------------------------------------~ 667 (1057)
T PLN02919 645 NHALREIDFVNETVRTL---------AGN---------GT---------------------------------------K 667 (1057)
T ss_pred CceEEEEecCCCEEEEE---------ecc---------Cc---------------------------------------c
Confidence 98888776533211000 000 00 0
Q ss_pred CcEecCCCCCceeccCCceEEEEecCCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccc
Q psy948 1384 GFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 1463 (1576)
Q Consensus 1384 G~~l~d~~~~~C~~~~~~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~ 1463 (1576)
|+....+.. . .......+.+|++++..+.||+++...+.|++.+.....
T Consensus 668 g~~~~gg~~----------------------------~---~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 668 GSDYQGGKK----------------------------G---TSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred cCCCCCChh----------------------------h---hHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 000000000 0 000123456788898889999999999999877654322
Q ss_pred cceeeecccc-------eeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEee----------
Q psy948 1464 KGQVQAGFGQ-------DLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVS---------- 1526 (1576)
Q Consensus 1464 ~~~v~~~~~~-------~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~---------- 1526 (1576)
... ..+.+. ......+..|.||||+..++.||++|.+ .++|.+.++++....+++.
T Consensus 717 v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~ 789 (1057)
T PLN02919 717 TRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE------SSSIRALDLKTGGSRLLAGGDPTFSDNLF 789 (1057)
T ss_pred EEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC------CCeEEEEECCCCcEEEEEecccccCcccc
Confidence 111 111110 0011235689999999988899999986 5789999987544333321
Q ss_pred -----------CCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCCCCcEEEE
Q psy948 1527 -----------ENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQ 1569 (1576)
Q Consensus 1527 -----------~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r~~i~ 1569 (1576)
..+..|.+|++++ .|.||.+|++.+ +|.+.+.++...+.+.
T Consensus 790 ~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~-rIrviD~~tg~v~tia 841 (1057)
T PLN02919 790 KFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNH-KIKKLDPATKRVTTLA 841 (1057)
T ss_pred cccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCC-EEEEEECCCCeEEEEe
Confidence 1256899999997 478999998865 8999988776555444
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.87 E-value=3.2e-07 Score=105.73 Aligned_cols=123 Identities=22% Similarity=0.223 Sum_probs=86.5
Q ss_pred ccceeeecccCCcEEEEeeccc--------ceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecC
Q psy948 1430 RRIEALDIDPVDEIIYWVDSYD--------RNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSD 1501 (1576)
Q Consensus 1430 ~~i~ald~D~~~~~vYWsD~~~--------~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~ 1501 (1576)
..+..+.+|+. ++||+++... +.|+|....+. + .+....+..|.|||++...+.||++++.
T Consensus 86 ~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~~~----~------~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 86 NRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPDGK----V------TVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETTSE----E------EEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred CCCceEEEcCC-CCEEEEecCCCccccccccceEEECCCCe----E------EEEecCcccccceEECCcchheeecccc
Confidence 34566777775 5688887755 56777665421 1 1234567889999999999999999986
Q ss_pred CCCCCCCCeEEEEEcCCC-----ceEEEeeCCC--CCceEEEEecCCCeEEEEecCCCCcEEEeecCCCCcEEEEec
Q psy948 1502 RSGSKPKGKVMVAHNDGR-----YRRSLVSENL--ESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQIS 1571 (1576)
Q Consensus 1502 ~~~~~~~~~I~v~~ldG~-----~~~~lv~~~l--~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r~~i~~~ 1571 (1576)
.++|.+..++.. .+++++.... ..|.+|+||+ .|.||.+.++.. +|.+.+.+|....+|...
T Consensus 155 ------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~-~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 155 ------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGG-RIVVFDPDGKLLREIELP 223 (246)
T ss_dssp ------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTT-EEEEEETTSCEEEEEE-S
T ss_pred ------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCC-EEEEECCCccEEEEEcCC
Confidence 688999998632 2455544222 3599999997 799999998755 999999999876666544
No 9
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.83 E-value=2.6e-09 Score=83.34 Aligned_cols=36 Identities=56% Similarity=1.306 Sum_probs=32.2
Q ss_pred CCCCCceecCCCeEEeCcccCCCCCCCCCCCCCCCc
Q psy948 548 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583 (1576)
Q Consensus 548 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C 583 (1576)
+|...+|+|.++.||+..|+|||+.||.|||||.+|
T Consensus 2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 578889999999999999999999999999999876
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.79 E-value=6.3e-06 Score=99.97 Aligned_cols=275 Identities=13% Similarity=0.133 Sum_probs=165.0
Q ss_pred CeEEEEeccCCceEe--c--ccccCCcceEEEeCCcceEEEecCC--CcCeEEEEecCCC--CcEEEEeccCCCCCcceE
Q psy948 1175 IKLDVAELDGTNRKT--L--KTAIQDPRGITLHPGIGYVYFSSWN--LQAYIGKIGMDGS--NFTRILTHEDDIAWPNAL 1246 (1576)
Q Consensus 1175 ~~I~v~~ldG~~r~~--l--~~~l~~P~~iavdP~~g~lywtd~g--~~~~I~ra~mdGs--~~~~iv~~~~~l~~P~gL 1246 (1576)
..|.+..+|....+. + .....+|..|+++|...+||.+.+. ....|....++.. ..+.+-.....-..|..|
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 455555554333221 1 3467899999999999999999986 4667776666554 222333333356789999
Q ss_pred EEeccCCeEEEEcCCCCeEEEEeCCCCce--EE--EEe---------CCCccceeEEeee--CCeEEEeccCCCcceeec
Q psy948 1247 TLDYFTERLYWADAHLDYIASVDLDGKHK--HI--VIS---------GQKVPHVFALTLF--EDHIYWTDWNTKSINRAD 1311 (1576)
Q Consensus 1247 aiD~~~~rlYw~D~~~~~I~s~~~dG~~r--~~--v~~---------~~~~~~P~~lavf--ed~lYwtd~~~~~i~~~~ 1311 (1576)
++|...+.||.+......|..+.++...+ .. ++. .+..+||..+.+. +.+||.+|.....|..
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~-- 170 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV-- 170 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE--
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE--
Confidence 99999999999999999998888875432 22 111 1123444444433 2344444443333221
Q ss_pred cccccccccceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCCCceEEEcCCCcEecCCC
Q psy948 1312 KFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGL 1391 (1576)
Q Consensus 1312 k~~~~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~ 1391 (1576)
T Consensus 171 -------------------------------------------------------------------------------- 170 (345)
T PF10282_consen 171 -------------------------------------------------------------------------------- 170 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceeccCCceEEEEecCCceeeecccccc--ccc----cccccccceeeecccCCcEEEEeecccceeEEEeecccccc
Q psy948 1392 SGVCKANDNKLTIVYSNGPEIRAYETHKRR--FRD----VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG 1465 (1576)
Q Consensus 1392 ~~~C~~~~~~~~ll~s~~~~Ir~i~~~~~~--~~~----~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~ 1465 (1576)
+.++... +.. .+.....+..|.|.+..+++|.+....++|....++... +
T Consensus 171 -----------------------~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g 226 (345)
T PF10282_consen 171 -----------------------YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-G 226 (345)
T ss_dssp -----------------------EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-T
T ss_pred -----------------------EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-C
Confidence 1111100 000 111223455677788888888888888888777666211 1
Q ss_pred eeeeccccee---eeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCC--ceE--EEeeCCCCCceEEEEe
Q psy948 1466 QVQAGFGQDL---GIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGR--YRR--SLVSENLESPSSIALD 1538 (1576)
Q Consensus 1466 ~v~~~~~~~~---~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~--~~~--~lv~~~l~~P~~IavD 1538 (1576)
.+........ ...+...|.+|+|.+..+.||.++++ .++|.+..++.. ..+ ..+..+-..||+|+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-
T ss_pred ceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe
Confidence 1111000000 11222368899999999999999986 588999998543 222 2233566789999999
Q ss_pred cCCCeEEEEecCCCCcEEEeecCC
Q psy948 1539 PTLGKMFWAETGASPRIESAWMDG 1562 (1576)
Q Consensus 1539 p~~G~LYWTD~g~~~~Iera~mDG 1562 (1576)
|...+||-+...++ .|....+|.
T Consensus 301 ~~g~~l~Va~~~s~-~v~vf~~d~ 323 (345)
T PF10282_consen 301 PDGRYLYVANQDSN-TVSVFDIDP 323 (345)
T ss_dssp TTSSEEEEEETTTT-EEEEEEEET
T ss_pred CCCCEEEEEecCCC-eEEEEEEeC
Confidence 99999999987655 566666653
No 11
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.79 E-value=1.4e-08 Score=82.28 Aligned_cols=42 Identities=26% Similarity=0.648 Sum_probs=36.7
Q ss_pred CeEEEEeCCCceEEEeecCCcccccccEEEEecCCCCcEEEEecCCCcccceeEEeec
Q psy948 8 NRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 65 (1576)
Q Consensus 8 ~~~y~~d~~~~~i~~~~~~~~~~~~~~i~r~~mdG~~~~~ii~~~~~~~~p~~l~id~ 65 (1576)
++|||||...+ |.|++|.|||+++++||. ++|.+|+|||||+
T Consensus 1 ~~iYWtD~~~~--------------~~I~~a~~dGs~~~~vi~--~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQD--------------PSIERANLDGSNRRTVIS--DDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTT--------------EEEEEEETTSTSEEEEEE--SSTSSEEEEEEET
T ss_pred CEEEEEECCCC--------------cEEEEEECCCCCeEEEEE--CCCCCcCEEEECC
Confidence 58999997777 129999999999988886 6899999999996
No 12
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.78 E-value=3.8e-09 Score=82.46 Aligned_cols=36 Identities=56% Similarity=1.306 Sum_probs=34.5
Q ss_pred CCCCCcccccCCceecccccCCCCCCCCCCCCCccc
Q psy948 750 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785 (1576)
Q Consensus 750 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~dgsDE~~C 785 (1576)
+|++.+|+|.++.|||..|+|||..||.|||||.+|
T Consensus 2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 589999999999999999999999999999999876
No 13
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.74 E-value=4.7e-09 Score=81.15 Aligned_cols=35 Identities=57% Similarity=1.452 Sum_probs=28.9
Q ss_pred CCCCceecCCCeEEeCcccCCCCCCCCCCCCCCCc
Q psy948 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583 (1576)
Q Consensus 549 C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C 583 (1576)
|++.+|+|.+|+|||..|+|||+.||.|||||.+|
T Consensus 1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 45678888888888888888888888888888765
No 14
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.71 E-value=6.3e-09 Score=80.41 Aligned_cols=35 Identities=57% Similarity=1.452 Sum_probs=33.1
Q ss_pred CCCCcccccCCceecccccCCCCCCCCCCCCCccc
Q psy948 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785 (1576)
Q Consensus 751 C~~~~f~C~~g~CI~~~~~CDg~~DC~dgsDE~~C 785 (1576)
|++.+|+|.+|+|||..|+|||..||+|||||.+|
T Consensus 1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 66789999999999999999999999999999876
No 15
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.64 E-value=7.5e-08 Score=77.99 Aligned_cols=41 Identities=37% Similarity=0.633 Sum_probs=38.2
Q ss_pred CeEEEeecCCCCCCCCC-eEEEEEcCCCceEEEeeCCCCCceEEEEec
Q psy948 1493 HNIYWTVSDRSGSKPKG-KVMVAHNDGRYRRSLVSENLESPSSIALDP 1539 (1576)
Q Consensus 1493 ~nLYWTD~~~~~~~~~~-~I~v~~ldG~~~~~lv~~~l~~P~~IavDp 1539 (1576)
++|||||.. .. +|++++++|+.+++|+..++..|.||||||
T Consensus 1 ~~iYWtD~~------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWS------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETT------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECC------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 589999986 46 999999999999999999999999999996
No 16
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.55 E-value=6.3e-05 Score=90.76 Aligned_cols=289 Identities=10% Similarity=0.054 Sum_probs=159.3
Q ss_pred eeEEecCCCeEEEEecc--CCceEec--ccccCCcceEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEEEeccCCCCC
Q psy948 1167 LCALDVRSIKLDVAELD--GTNRKTL--KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAW 1242 (1576)
Q Consensus 1167 ~~avD~~~~~I~v~~ld--G~~r~~l--~~~l~~P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~~~~~l~~ 1242 (1576)
+|.+....+.|.+.+++ |.. +.+ +.....|..|+++|...+||.+.+. ...|....+++...-+++........
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l-~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGAL-TLLQVVDVPGQVQPMVISPDKRHLYVGVRP-EFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCce-eeeeEEecCCCCccEEECCCCCEEEEEECC-CCcEEEEEECCCCceEEeeeecCCCC
Confidence 34555556667777764 321 222 2234679999999999999998774 34555555543322222222223458
Q ss_pred cceEEEeccCCeEEEEcCCCCeEEEEeCC--CCceEEEEeCCCccceeEEeee--CCeEEEeccCCCcceeecccccccc
Q psy948 1243 PNALTLDYFTERLYWADAHLDYIASVDLD--GKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNAREI 1318 (1576)
Q Consensus 1243 P~gLaiD~~~~rlYw~D~~~~~I~s~~~d--G~~r~~v~~~~~~~~P~~lavf--ed~lYwtd~~~~~i~~~~k~~~~~~ 1318 (1576)
|.+|+++..+++||.+....+.|...+++ |.-...+.......+|.++++. +.++|.++.....|...+..+...+
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l 161 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHL 161 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcc
Confidence 99999999999999998888888887775 3221222111234556666554 3466666655544432221100000
Q ss_pred ccceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCCCceEEEcCCCcEecCCCCCceecc
Q psy948 1319 QAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKAN 1398 (1576)
Q Consensus 1319 ~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~~~~C~~~ 1398 (1576)
.
T Consensus 162 ~------------------------------------------------------------------------------- 162 (330)
T PRK11028 162 V------------------------------------------------------------------------------- 162 (330)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCceEEEEecCCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccc-cceeeecccce-ee
Q psy948 1399 DNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ-KGQVQAGFGQD-LG 1476 (1576)
Q Consensus 1399 ~~~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~-~~~v~~~~~~~-~~ 1476 (1576)
... ..... +.....+..++|++..++||.++...++|....++... ..+.+...... -.
T Consensus 163 ---------------~~~---~~~~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~ 223 (330)
T PRK11028 163 ---------------AQE---PAEVT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPAD 223 (330)
T ss_pred ---------------ccC---CCcee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCc
Confidence 000 00000 00011234456667777777777766777655554211 11111100000 00
Q ss_pred eeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcC--CCceEEEee-CCCCCceEEEEecCCCeEEEEecCCCC
Q psy948 1477 IKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHND--GRYRRSLVS-ENLESPSSIALDPTLGKMFWAETGASP 1553 (1576)
Q Consensus 1477 ~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ld--G~~~~~lv~-~~l~~P~~IavDp~~G~LYWTD~g~~~ 1553 (1576)
..+...+.+|++++.++.||-++.. .++|.|.+++ +...+.+-. .....|++|+++|...+||-+..+..
T Consensus 224 ~~~~~~~~~i~~~pdg~~lyv~~~~------~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~- 296 (330)
T PRK11028 224 FSDTRWAADIHITPDGRHLYACDRT------ASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSH- 296 (330)
T ss_pred CCCCccceeEEECCCCCEEEEecCC------CCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCC-
Confidence 0011234468999988899998764 4678888764 332222211 12358999999999999999986543
Q ss_pred cEEEeecCC
Q psy948 1554 RIESAWMDG 1562 (1576)
Q Consensus 1554 ~Iera~mDG 1562 (1576)
.|....+|.
T Consensus 297 ~v~v~~~~~ 305 (330)
T PRK11028 297 HISVYEIDG 305 (330)
T ss_pred cEEEEEEcC
Confidence 666666654
No 17
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.40 E-value=1.5e-07 Score=72.71 Aligned_cols=36 Identities=36% Similarity=0.971 Sum_probs=29.3
Q ss_pred ccCCCCccccccccCCCceEEEcCCCcEecCCCCCce
Q psy948 1359 CATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVC 1395 (1576)
Q Consensus 1359 C~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~~~~C 1395 (1576)
|+.+|++|+|+|++++++|+|+||.||.|.++.+ +|
T Consensus 1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~-tC 36 (36)
T PF14670_consen 1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGR-TC 36 (36)
T ss_dssp CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSS-SE
T ss_pred CCCCCCCcCCCCccCCCceEeECCCCCEECcCCC-CC
Confidence 5567899999999999999999999999986554 44
No 18
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.39 E-value=2e-07 Score=71.23 Aligned_cols=32 Identities=63% Similarity=1.441 Sum_probs=26.0
Q ss_pred CCCCceecCCCeEEeCcccCCCCCCCCCCCCC
Q psy948 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE 580 (1576)
Q Consensus 549 C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE 580 (1576)
|...+|+|.++.|||..|+|||+.||.|||||
T Consensus 2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 45568888888888888888888888888887
No 19
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.36 E-value=2.3e-07 Score=70.90 Aligned_cols=32 Identities=63% Similarity=1.441 Sum_probs=30.5
Q ss_pred CCCCcccccCCceecccccCCCCCCCCCCCCC
Q psy948 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE 782 (1576)
Q Consensus 751 C~~~~f~C~~g~CI~~~~~CDg~~DC~dgsDE 782 (1576)
|++.+|+|.+|.|||..|+|||..||+|||||
T Consensus 2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 66779999999999999999999999999998
No 20
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.36 E-value=6e-07 Score=73.17 Aligned_cols=42 Identities=38% Similarity=0.824 Sum_probs=38.0
Q ss_pred EEEecCCCcccceeEEeecCCCcEEEeeCCCCcEEEEcCCCCce
Q psy948 47 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK 90 (1576)
Q Consensus 47 ~ii~~~~~~~~p~~l~id~~~~~lyw~D~~~~~I~~~~~~g~~r 90 (1576)
+++. ..+..|+|||+|+..++|||+|+....|++++++|+++
T Consensus 2 ~~~~--~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLS--EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43 (43)
T ss_pred EEEE--CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence 3453 68999999999999999999999999999999999864
No 21
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.30 E-value=1.2e-06 Score=71.45 Aligned_cols=42 Identities=38% Similarity=0.711 Sum_probs=38.2
Q ss_pred EEeeCCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCCCCc
Q psy948 1523 SLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565 (1576)
Q Consensus 1523 ~lv~~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r 1565 (1576)
+|+..++..|.+||+||..++|||+|+.. .+|+|++|+|+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~-~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCC-CEEEEEeCCCCCC
Confidence 46667999999999999999999999987 5999999999875
No 22
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=98.22 E-value=4.7e-07 Score=69.98 Aligned_cols=32 Identities=34% Similarity=0.810 Sum_probs=26.9
Q ss_pred CCCcccccceeCCCeeeeecCCCcccCCCCcc
Q psy948 1084 ETNQCGHKCVDTLTGYYCECNTGYNDDDIGTV 1115 (1576)
Q Consensus 1084 ~~~~Csq~C~Nt~Gsy~C~C~~Gy~l~~~~~~ 1115 (1576)
++++|+|+|+|++|+|+|+|++||.|.++++.
T Consensus 4 ~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~t 35 (36)
T PF14670_consen 4 NNGGCSHICVNTPGSYRCSCPPGYKLAEDGRT 35 (36)
T ss_dssp GGGGSSSEEEEETTSEEEE-STTEEE-TTSSS
T ss_pred CCCCcCCCCccCCCceEeECCCCCEECcCCCC
Confidence 57999999999999999999999999876643
No 23
>KOG4659|consensus
Probab=98.21 E-value=0.00021 Score=91.84 Aligned_cols=316 Identities=21% Similarity=0.292 Sum_probs=188.1
Q ss_pred eEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEE------EeccCCCCCcceEEEeccCCeEEEEcCCCCeEEEEeCCC
Q psy948 1199 GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI------LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG 1272 (1576)
Q Consensus 1199 ~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~i------v~~~~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG 1272 (1576)
+|.---..+++|.+. +++.|..+-.||..|..- ......|..|.+||.- ..+.||+.| .+.|.++..+|
T Consensus 319 gIl~kGnG~n~~it~--~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a-~DGSl~VGD--fNyIRRI~~dg 393 (1899)
T KOG4659|consen 319 GILEKGNGGNRLITE--EPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYA-PDGSLIVGD--FNYIRRISQDG 393 (1899)
T ss_pred CeEEecCCcceEeec--CCceEEEeccCcccccccCCCCCCccccceeeceeeEEEc-CCCcEEEcc--chheeeecCCC
Confidence 444444566888876 444555556677765321 1123356788888875 467888877 57899999999
Q ss_pred CceEEEE-eCCCccceeEEee--eCCeEEEeccCCCcceeeccccccccccceecccccccCCCcceeeccCCceeccCC
Q psy948 1273 KHKHIVI-SGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNN 1349 (1576)
Q Consensus 1273 ~~r~~v~-~~~~~~~P~~lav--fed~lYwtd~~~~~i~~~~k~~~~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~ 1349 (1576)
+-+.++- ......|-+-||+ -.+.||.+|..++.|+|+....++.... -|.+....
T Consensus 394 ~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~---------------------N~evvaG~ 452 (1899)
T KOG4659|consen 394 QVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRN---------------------NYEVVAGD 452 (1899)
T ss_pred ceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcccccc---------------------CeeEEecc
Confidence 9888775 3355777777777 6899999999999999998766533221 12222233
Q ss_pred CccccCCCC-ccCCCCccccccccCCCceEEEcCCCcEecCCCCCceeccCCceEEEEecCCceeeeccccc--------
Q psy948 1350 AKKCLDVDE-CATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKR-------- 1420 (1576)
Q Consensus 1350 ~~~c~d~ne-C~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~~~~C~~~~~~~~ll~s~~~~Ir~i~~~~~-------- 1420 (1576)
+..|.-.+| |.. |+= =.+. +=.=|.|.. .+..-+|.|+++..||.+...+.
T Consensus 453 Ge~Clp~desCGD--Gal---A~dA----~L~~PkGIa-----------~dk~g~lYfaD~t~IR~iD~~giIstlig~~ 512 (1899)
T KOG4659|consen 453 GEVCLPADESCGD--GAL---AQDA----QLIFPKGIA-----------FDKMGNLYFADGTRIRVIDTTGIISTLIGTT 512 (1899)
T ss_pred CcCccccccccCc--chh---cccc----eeccCCcee-----------EccCCcEEEecccEEEEeccCceEEEeccCC
Confidence 334332111 221 000 0000 000022222 22233566777777777653321
Q ss_pred --ccc--------ccc-cccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccce------------e-e
Q psy948 1421 --RFR--------DVI-SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQD------------L-G 1476 (1576)
Q Consensus 1421 --~~~--------~~v-~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~------------~-~ 1476 (1576)
... .++ ..+..+..|+++|.++.||..|. +.|+|+..+. +..++.+-... + .
T Consensus 513 ~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~--nvvlrit~~~--rV~Ii~GrP~hC~~a~~t~~~skla~ 588 (1899)
T KOG4659|consen 513 PDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT--NVVLRITVVH--RVRIILGRPTHCDLANATSSASKLAD 588 (1899)
T ss_pred CCccCccccccccchhheeeecccceeecCCCCeEEEeec--ceEEEEccCc--cEEEEcCCccccccCCCchhhhhhhh
Confidence 100 011 12457889999999999999885 4666654432 22232222111 1 1
Q ss_pred eeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEe-------------------------eCCCCC
Q psy948 1477 IKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLV-------------------------SENLES 1531 (1576)
Q Consensus 1477 ~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv-------------------------~~~l~~ 1531 (1576)
-..+..+..|||-. .+-||.++++ ....++|.+...||+.. .|. .+.+..
T Consensus 589 H~tl~~~r~Iavg~-~G~lyvaEsD---~rriNrvr~~~tdg~i~-ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lns 663 (1899)
T KOG4659|consen 589 HRTLLIQRDIAVGT-DGALYVAESD---GRRINRVRKLSTDGTIS-ILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNS 663 (1899)
T ss_pred hhhhhhhhceeecC-CceEEEEecc---chhhhheEEeccCceEE-EecCCCCCCCcccccCCccccccchhhhccccCC
Confidence 12366789999984 6789999875 22346677777777431 111 246779
Q ss_pred ceEEEEecCCCeEEEEecCCCCcEE-----EeecCCCCcEEEEec
Q psy948 1532 PSSIALDPTLGKMFWAETGASPRIE-----SAWMDGSHRSATQIS 1571 (1576)
Q Consensus 1532 P~~IavDp~~G~LYWTD~g~~~~Ie-----ra~mDGs~r~~i~~~ 1571 (1576)
|.||||-| .|.+|.+|.|.. +|. .|.+||++.-.|...
T Consensus 664 p~alaVsP-dg~v~IAD~gN~-rIr~Vs~~~~~~~~sr~YEi~~p 706 (1899)
T KOG4659|consen 664 PYALAVSP-DGDVIIADSGNS-RIRKVSARMAKYDGSRTYEITDP 706 (1899)
T ss_pred cceEEECC-CCcEEEecCCch-hhhhhhhcccccCCCceeeccCc
Confidence 99999998 589999999854 554 345677665555443
No 24
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=98.08 E-value=2.2e-06 Score=69.61 Aligned_cols=35 Identities=40% Similarity=0.962 Sum_probs=30.7
Q ss_pred cCccccccCCCccc--ccceeCCCeeeeecCCCcccCC
Q psy948 1076 NVDECAKVETNQCG--HKCVDTLTGYYCECNTGYNDDD 1111 (1576)
Q Consensus 1076 didEC~~~~~~~Cs--q~C~Nt~Gsy~C~C~~Gy~l~~ 1111 (1576)
|||||+. ..+.|. +.|+|+.|||+|.|++||.+..
T Consensus 1 DidEC~~-~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~ 37 (42)
T PF07645_consen 1 DIDECAE-GPHNCPENGTCVNTEGSYSCSCPPGYELND 37 (42)
T ss_dssp ESSTTTT-TSSSSSTTSEEEEETTEEEEEESTTEEECT
T ss_pred CccccCC-CCCcCCCCCEEEcCCCCEEeeCCCCcEECC
Confidence 6999997 468897 6999999999999999998544
No 25
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.05 E-value=0.0008 Score=82.41 Aligned_cols=103 Identities=16% Similarity=0.243 Sum_probs=62.0
Q ss_pred ccCCcceEEEeCCcceEEEecCCC----------c-CeEEEEec---CCCCcE-EEEeccCCCCCcceEEEeccCCeEEE
Q psy948 1193 AIQDPRGITLHPGIGYVYFSSWNL----------Q-AYIGKIGM---DGSNFT-RILTHEDDIAWPNALTLDYFTERLYW 1257 (1576)
Q Consensus 1193 ~l~~P~~iavdP~~g~lywtd~g~----------~-~~I~ra~m---dGs~~~-~iv~~~~~l~~P~gLaiD~~~~rlYw 1257 (1576)
.|.+|++||+|+. |.||.++... . .+|.+..- ||..-+ +++. +.+..|.||++... + ||+
T Consensus 12 ~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa--~~l~~p~Gi~~~~~-G-lyV 86 (367)
T TIGR02604 12 LLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA--EELSMVTGLAVAVG-G-VYV 86 (367)
T ss_pred ccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee--cCCCCccceeEecC-C-EEE
Confidence 4899999999986 7799887521 1 26766643 565433 3333 46889999999754 4 999
Q ss_pred EcCCCCeEEEE-eCCCC-----ceEEEEeCCCc------cceeEEeee-CCeEEEecc
Q psy948 1258 ADAHLDYIASV-DLDGK-----HKHIVISGQKV------PHVFALTLF-EDHIYWTDW 1302 (1576)
Q Consensus 1258 ~D~~~~~I~s~-~~dG~-----~r~~v~~~~~~------~~P~~lavf-ed~lYwtd~ 1302 (1576)
++.. .|.++ +.+|. .+++++.+... ..+.+|++- .++||++..
T Consensus 87 ~~~~--~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 87 ATPP--DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eCCC--eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 8744 45544 44443 34455543211 114455553 346776643
No 26
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.04 E-value=0.0035 Score=76.19 Aligned_cols=266 Identities=17% Similarity=0.137 Sum_probs=154.4
Q ss_pred eeEEec---CCCeEEEEeccCC--ceEec---ccccCCcceEEEeCCcceEEEecCCCc-CeEEEEecCCCCcEEE--Ee
Q psy948 1167 LCALDV---RSIKLDVAELDGT--NRKTL---KTAIQDPRGITLHPGIGYVYFSSWNLQ-AYIGKIGMDGSNFTRI--LT 1235 (1576)
Q Consensus 1167 ~~avD~---~~~~I~v~~ldG~--~r~~l---~~~l~~P~~iavdP~~g~lywtd~g~~-~~I~ra~mdGs~~~~i--v~ 1235 (1576)
+|++.. ..+.|.+..++.. ..+.+ ...-..|..|+++|...+||.+.++.. -.+....-+|+-...+ +.
T Consensus 51 LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~ 130 (345)
T PF10282_consen 51 LYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR 130 (345)
T ss_dssp EEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE
T ss_pred EEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc
Confidence 677766 3567777776653 22233 234567999999999999999997643 3344444455544332 21
Q ss_pred c--------cCCCCCcceEEEeccCCeEEEEcCCCCeEEEEeCCCCce--EE--EEeCCCccceeEEeeeCC--eEEEec
Q psy948 1236 H--------EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK--HI--VISGQKVPHVFALTLFED--HIYWTD 1301 (1576)
Q Consensus 1236 ~--------~~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG~~r--~~--v~~~~~~~~P~~lavfed--~lYwtd 1301 (1576)
. ......|..+.++..++.||.+|...++|...+++.... .. .+.-.....|..|++..+ ++|.+.
T Consensus 131 ~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~ 210 (345)
T PF10282_consen 131 HEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN 210 (345)
T ss_dssp SEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE
T ss_pred cCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEec
Confidence 1 124567889999999999999999999999999987652 11 122234456777776544 677765
Q ss_pred cCCCcceeeccccccccccceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCCCceEEEc
Q psy948 1302 WNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSC 1381 (1576)
Q Consensus 1302 ~~~~~i~~~~k~~~~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~C 1381 (1576)
-..+.|..++.-..
T Consensus 211 e~s~~v~v~~~~~~------------------------------------------------------------------ 224 (345)
T PF10282_consen 211 ELSNTVSVFDYDPS------------------------------------------------------------------ 224 (345)
T ss_dssp TTTTEEEEEEEETT------------------------------------------------------------------
T ss_pred CCCCcEEEEeeccc------------------------------------------------------------------
Confidence 54444432211000
Q ss_pred CCCcEecCCCCCceeccCCceEEEEecCCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecc
Q psy948 1382 NAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461 (1576)
Q Consensus 1382 p~G~~l~d~~~~~C~~~~~~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~ 1461 (1576)
.| .+ . .+..+.+.... ......+.+|.+.+..+.||.++...++|....++.
T Consensus 225 -~g-~~---------------~-------~~~~~~~~~~~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 225 -DG-SL---------------T-------EIQTISTLPEG----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp -TT-EE---------------E-------EEEEEESCETT----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred -CC-ce---------------e-------EEEEeeecccc----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 00 00 0 00001110000 011124667788888999999999999987777754
Q ss_pred cccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCC--ceEEEe-eCCCCCceEEE
Q psy948 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGR--YRRSLV-SENLESPSSIA 1536 (1576)
Q Consensus 1462 ~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~--~~~~lv-~~~l~~P~~Ia 1536 (1576)
.. +.+.. ...+-.....|++|+|+...+.||.++.. .++|.+.++|.. ..+.+. ...+.+|..|+
T Consensus 277 ~~-g~l~~---~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~------s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 277 AT-GTLTL---VQTVPTGGKFPRHFAFSPDGRYLYVANQD------SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TT-TTEEE---EEEEEESSSSEEEEEE-TTSSEEEEEETT------TTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred CC-CceEE---EEEEeCCCCCccEEEEeCCCCEEEEEecC------CCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 32 12211 01111234569999999999999999875 578888877532 222222 24566777665
No 27
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.00 E-value=6e-06 Score=86.95 Aligned_cols=70 Identities=41% Similarity=0.755 Sum_probs=56.4
Q ss_pred CCCceeecCCCCceecCcccCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCC----CeecCCCCCCCcCC---CCCCCCc
Q psy948 300 TQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNG----NCTPSASICDGVDD---CRDGSDE 372 (1576)
Q Consensus 300 ~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~~c~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~d---C~dgsDE 372 (1576)
..+.|+|-.....=||+.++.|+.-||+||||||. ...|..+.|.|.|. .-||.+++=||+=| |=|||||
T Consensus 34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG---TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG---TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred CCCceEecCCCCceecHHHccCcceeCCCCCCccc---cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence 34678997544444999999999999999999984 34687889999763 56888888888888 8888888
No 28
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=97.96 E-value=7.2e-06 Score=86.36 Aligned_cols=75 Identities=43% Similarity=0.724 Sum_probs=62.4
Q ss_pred CCeEeeCCCC-e-ecCCCCCCCcCCCCCCCCccCCCCCCCCCceecCCCC---eeecCCCCCCCCCC---CCCCCCCCCC
Q psy948 343 AGSFQCDNGN-C-TPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNG---RCILNSWKCDGEPD---CKDGSDEDPA 414 (1576)
Q Consensus 343 ~~~f~C~~g~-C-i~~~~~CDg~~dC~dgsDE~~C~~~C~~~~f~C~~~~---~Ci~~~~~Cdg~~d---C~dgsDE~~~ 414 (1576)
.+.|+|-+|. = |+.+++.|+.-||+|||||.+= ..|+...|.|.+.| +-||.++|=||+-| |=|||||...
T Consensus 35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGT-sAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~~ 113 (176)
T PF12999_consen 35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGT-SACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESGG 113 (176)
T ss_pred CCceEecCCCCceecHHHccCcceeCCCCCCcccc-ccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCCC
Confidence 4569997663 3 8999999999999999999862 35888899998665 67999999999999 9999999655
Q ss_pred CCCC
Q psy948 415 MCHN 418 (1576)
Q Consensus 415 ~C~~ 418 (1576)
.|++
T Consensus 114 ~C~N 117 (176)
T PF12999_consen 114 KCPN 117 (176)
T ss_pred CCcc
Confidence 5653
No 29
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0038 Score=76.84 Aligned_cols=278 Identities=17% Similarity=0.203 Sum_probs=163.4
Q ss_pred CCcceEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCCeEEEEcCCCCeEEEEeCCCCc
Q psy948 1195 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 1274 (1576)
Q Consensus 1195 ~~P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG~~ 1274 (1576)
..|.++++.|..-.+||+..+.. .|....-- .+.... .......+|+|+++...+.++|......+.|..++.....
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~-~n~~~~-~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSN-DVSVIDAT-SNTVTQ-SLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCc-eeeecccc-cceeee-eccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccc
Confidence 48999999999999999876544 33333222 221111 1222338999999999999999999999999999955544
Q ss_pred eEEEEeCCCccceeEEeeeCCeEEEeccC--CCcceeeccccccccccceecccccccCCCcceeeccCCceeccCCCcc
Q psy948 1275 KHIVISGQKVPHVFALTLFEDHIYWTDWN--TKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKK 1352 (1576)
Q Consensus 1275 r~~v~~~~~~~~P~~lavfed~lYwtd~~--~~~i~~~~k~~~~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~ 1352 (1576)
....+.....++.++++....++|.++.. +..+..++.-+.+.... .. .|. + |
T Consensus 108 ~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~------vG~--~----P------------ 162 (381)
T COG3391 108 VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IP------VGN--T----P------------ 162 (381)
T ss_pred eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-Ee------cCC--C----c------------
Confidence 33222222355566666678899999994 67887777765544332 10 000 0 1
Q ss_pred ccCCCCccCCCCccccccccCCCceEEEcCCCcEecCCCCCc--eeccCCceEEEEecCCceeeeccccccccccccccc
Q psy948 1353 CLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGV--CKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDER 1430 (1576)
Q Consensus 1353 c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~~~~--C~~~~~~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~ 1430 (1576)
.|.......... .......+.++-.+...+.+ ... ...+....
T Consensus 163 ------------------------------~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~----~~~~~~~~ 207 (381)
T COG3391 163 ------------------------------TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSV----GSLVGVGT 207 (381)
T ss_pred ------------------------------ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccc----ccccccCC
Confidence 111111111000 00011112222222222222 111 01233345
Q ss_pred cceeeecccCCcEEEEeeccc--ceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCC
Q psy948 1431 RIEALDIDPVDEIIYWVDSYD--RNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPK 1508 (1576)
Q Consensus 1431 ~i~ald~D~~~~~vYWsD~~~--~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~ 1508 (1576)
.+..+++++...++|.++... +.+.+.+.... .+.. ..+....+ .|.+++++|.+.++|..+.. .
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~---~v~~---~~~~~~~~-~~~~v~~~p~g~~~yv~~~~------~ 274 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG---NVTA---TDLPVGSG-APRGVAVDPAGKAAYVANSQ------G 274 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCCc---eEEE---eccccccC-CCCceeECCCCCEEEEEecC------C
Confidence 677888899999999998877 57766554322 2211 11223344 79999999999999999874 4
Q ss_pred CeEEEEEcCCCceEEEeeC---CCCCceEEEEecCCCeEEEEe
Q psy948 1509 GKVMVAHNDGRYRRSLVSE---NLESPSSIALDPTLGKMFWAE 1548 (1576)
Q Consensus 1509 ~~I~v~~ldG~~~~~lv~~---~l~~P~~IavDp~~G~LYWTD 1548 (1576)
+.+.+.+.........+.. ....|..+++.+.-...|-+.
T Consensus 275 ~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (381)
T COG3391 275 GTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYDTNYVSV 317 (381)
T ss_pred CeEEEEeCCCCceeeeecccccccccceeccceeeccccccee
Confidence 6777777766544444332 223477888877766666655
No 30
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.86 E-value=0.0024 Score=77.02 Aligned_cols=121 Identities=16% Similarity=0.208 Sum_probs=70.1
Q ss_pred cccccceeeecccCCcEEEEeecccc---eeEEEeecccccc----e---------ee-----ecc-cceeeeeccCCcc
Q psy948 1427 SDERRIEALDIDPVDEIIYWVDSYDR---NIRRSFMLEAQKG----Q---------VQ-----AGF-GQDLGIKSIGKLT 1484 (1576)
Q Consensus 1427 ~~~~~i~ald~D~~~~~vYWsD~~~~---~I~r~~l~~~~~~----~---------v~-----~~~-~~~~~~~~~~~p~ 1484 (1576)
..++++.+++||+.++.||.+|.+.. .|.++. .|.+.+ . +. ... .-.+.+..-..|.
T Consensus 178 ~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~ 256 (331)
T PF07995_consen 178 YGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPT 256 (331)
T ss_dssp E--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EE
T ss_pred eCCCccccEEEECCCCcEEEEccCCCCCcEEEEec-cCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccC
Confidence 46789999999999999999987764 444432 221100 0 00 000 0011122234677
Q ss_pred eeeec------CCCCeEEEeecCCCCCCCCCeEEEEEcCCCc----eEEEeeCCCC-CceEEEEecCCCeEEEEecCCCC
Q psy948 1485 AIAVD------WIAHNIYWTVSDRSGSKPKGKVMVAHNDGRY----RRSLVSENLE-SPSSIALDPTLGKMFWAETGASP 1553 (1576)
Q Consensus 1485 glAVD------wv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~----~~~lv~~~l~-~P~~IavDp~~G~LYWTD~g~~~ 1553 (1576)
||++= ...+.+|+++.. ..+|.+..++... ..+++ .... .|++|+++|. |.||.++. ...
T Consensus 257 G~~~y~g~~fp~~~g~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~-~~~~~r~~~v~~~pD-G~Lyv~~d-~~G 327 (331)
T PF07995_consen 257 GIIFYRGSAFPEYRGDLFVADYG------GGRIWRLDLDEDGSVTEEEEFL-GGFGGRPRDVAQGPD-GALYVSDD-SDG 327 (331)
T ss_dssp EEEEE-SSSSGGGTTEEEEEETT------TTEEEEEEEETTEEEEEEEEEC-TTSSS-EEEEEEETT-SEEEEEE--TTT
T ss_pred ceEEECCccCccccCcEEEecCC------CCEEEEEeeecCCCccceEEcc-ccCCCCceEEEEcCC-CeEEEEEC-CCC
Confidence 77764 235568888874 5789998886332 22333 4444 8999999995 99999987 445
Q ss_pred cEEE
Q psy948 1554 RIES 1557 (1576)
Q Consensus 1554 ~Ier 1557 (1576)
+|.|
T Consensus 328 ~iyR 331 (331)
T PF07995_consen 328 KIYR 331 (331)
T ss_dssp TEEE
T ss_pred eEeC
Confidence 7887
No 31
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.84 E-value=0.0082 Score=72.43 Aligned_cols=138 Identities=11% Similarity=0.065 Sum_probs=82.7
Q ss_pred eeEEecCCCeEEEEeccCCce-Eec--ccccCCcceEEEeCCcceEEEecCCCcCeEEEEec--CCCCcEEEEeccCCCC
Q psy948 1167 LCALDVRSIKLDVAELDGTNR-KTL--KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM--DGSNFTRILTHEDDIA 1241 (1576)
Q Consensus 1167 ~~avD~~~~~I~v~~ldG~~r-~~l--~~~l~~P~~iavdP~~g~lywtd~g~~~~I~ra~m--dGs~~~~iv~~~~~l~ 1241 (1576)
+|+.......|.+..++.... +.+ ......|..|+++|...+||-+.++. .+|....+ +|.-.+.+-. .....
T Consensus 49 lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~-~~v~v~~~~~~g~~~~~~~~-~~~~~ 126 (330)
T PRK11028 49 LYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNA-NCVSVSPLDKDGIPVAPIQI-IEGLE 126 (330)
T ss_pred EEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCC-CeEEEEEECCCCCCCCceee-ccCCC
Confidence 455555566777666653221 122 12235799999999999999988763 44444444 4543222211 12346
Q ss_pred CcceEEEeccCCeEEEEcCCCCeEEEEeCCCCceEE-----EEeCCCccceeEEeeeCC--eEEEeccCCCc
Q psy948 1242 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHI-----VISGQKVPHVFALTLFED--HIYWTDWNTKS 1306 (1576)
Q Consensus 1242 ~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG~~r~~-----v~~~~~~~~P~~lavfed--~lYwtd~~~~~ 1306 (1576)
.|.+++++...+.||.++...+.|...+++...... .+....-.+|.++++..+ ++|.++...+.
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~ 198 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS 198 (330)
T ss_pred cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE
Confidence 799999999999999999999999999887532110 011111234555555433 66666544443
No 32
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.0013 Score=77.58 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=61.9
Q ss_pred cCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcC---CC--ceEEEee--CCCCCceEEEEecCCCeEE-EEecCC
Q psy948 1480 IGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHND---GR--YRRSLVS--ENLESPSSIALDPTLGKMF-WAETGA 1551 (1576)
Q Consensus 1480 ~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ld---G~--~~~~lv~--~~l~~P~~IavDp~~G~LY-WTD~g~ 1551 (1576)
+..|.|||+++..+.||++|+. .++|.+..++ |. .++..+. ..-..|-+++||. .|.|| ++.|+.
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~------~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g 234 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTP------ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGG 234 (307)
T ss_pred EEecCceEECCCCCEEEEEeCC------CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCC
Confidence 6689999999999999999985 5889999887 32 2222332 3346789999995 67777 666653
Q ss_pred CCcEEEeecCCCCcEEEEe
Q psy948 1552 SPRIESAWMDGSHRSATQI 1570 (1576)
Q Consensus 1552 ~~~Iera~mDGs~r~~i~~ 1570 (1576)
.+|.|-+.||....+|..
T Consensus 235 -~~v~~~~pdG~l~~~i~l 252 (307)
T COG3386 235 -GRVVRFNPDGKLLGEIKL 252 (307)
T ss_pred -ceEEEECCCCcEEEEEEC
Confidence 389999999887665543
No 33
>KOG4659|consensus
Probab=97.74 E-value=0.00025 Score=91.17 Aligned_cols=151 Identities=22% Similarity=0.252 Sum_probs=105.6
Q ss_pred EEEEecCCceeeeccccccccccc---cccccceeeecccCCcEEEEeecccceeEEEeecccc----cceeeecccce-
Q psy948 1403 TIVYSNGPEIRAYETHKRRFRDVI---SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ----KGQVQAGFGQD- 1474 (1576)
Q Consensus 1403 ~ll~s~~~~Ir~i~~~~~~~~~~v---~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~----~~~v~~~~~~~- 1474 (1576)
.|++.+.+-||++..++.-.+.+. .....-.-|+++|.++.||.+|...+.|+|+.-.... .-+++++.+..
T Consensus 377 Sl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~C 456 (1899)
T KOG4659|consen 377 SLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVC 456 (1899)
T ss_pred cEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCc
Confidence 366778888999887765433332 2233456788899999999999999999998643321 11233333211
Q ss_pred ------------eeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEE------------------
Q psy948 1475 ------------LGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSL------------------ 1524 (1576)
Q Consensus 1475 ------------~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~l------------------ 1524 (1576)
..-..+..|.||||| ..++||++|+. .|.+.+.+|-.+.++
T Consensus 457 lp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--------~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl 527 (1899)
T KOG4659|consen 457 LPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--------RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKL 527 (1899)
T ss_pred cccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--------EEEEeccCceEEEeccCCCCccCccccccccch
Confidence 111246789999999 68899999974 588887777654332
Q ss_pred eeCCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCCCCc
Q psy948 1525 VSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565 (1576)
Q Consensus 1525 v~~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r 1565 (1576)
+.-.|..|..|||+|..+.||..|.. .|.|..-++.-|
T Consensus 528 ~~~~leWPT~LaV~Pmdnsl~Vld~n---vvlrit~~~rV~ 565 (1899)
T KOG4659|consen 528 VDLQLEWPTSLAVDPMDNSLLVLDTN---VVLRITVVHRVR 565 (1899)
T ss_pred hheeeecccceeecCCCCeEEEeecc---eEEEEccCccEE
Confidence 12346789999999999999999964 788887777665
No 34
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.69 E-value=3.3e-05 Score=62.74 Aligned_cols=35 Identities=51% Similarity=1.234 Sum_probs=31.5
Q ss_pred CCCCccCCCCccc--cccccCCCceEEEcCCCcEecC
Q psy948 1355 DVDECATGIHHCS--QVCTNLNGTYACSCNAGFTLSD 1389 (1576)
Q Consensus 1355 d~neC~~~~~~Cs--~lC~n~~gsy~C~Cp~G~~l~d 1389 (1576)
|||||+...+.|. +.|+|+.|||+|.|++||.+..
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~ 37 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELND 37 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECT
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECC
Confidence 6899999888996 8999999999999999999654
No 35
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.68 E-value=0.066 Score=62.74 Aligned_cols=92 Identities=8% Similarity=-0.080 Sum_probs=61.9
Q ss_pred ceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeE
Q psy948 1432 IEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKV 1511 (1576)
Q Consensus 1432 i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I 1511 (1576)
+.++.|++....+|.+....+.|...++... ++.. .+.....+.+|++.+.+..||-+... .++|
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~---~~~~------~~~~~~~~~~~~~~~~g~~l~~~~~~------~~~i 273 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTY---EVLD------YLLVGQRVWQLAFTPDEKYLLTTNGV------SNDV 273 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCC---cEEE------EEEeCCCcceEEECCCCCEEEEEcCC------CCeE
Confidence 4567888888888887666666765554321 2111 01112468899999888888877542 4789
Q ss_pred EEEEcCCCceEEEeeCCCCCceEEEEec
Q psy948 1512 MVAHNDGRYRRSLVSENLESPSSIALDP 1539 (1576)
Q Consensus 1512 ~v~~ldG~~~~~lv~~~l~~P~~IavDp 1539 (1576)
.|.++.+.....-+.. -..|.+||+.|
T Consensus 274 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 274 SVIDVAALKVIKSIKV-GRLPWGVVVRP 300 (300)
T ss_pred EEEECCCCcEEEEEEc-ccccceeEeCC
Confidence 9999988765444544 48899999865
No 36
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.68 E-value=0.0046 Score=70.65 Aligned_cols=114 Identities=16% Similarity=0.226 Sum_probs=64.7
Q ss_pred cccceeeecccCCcEEEEeeccc-ceeEEEeecc-cccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCC
Q psy948 1429 ERRIEALDIDPVDEIIYWVDSYD-RNIRRSFMLE-AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSK 1506 (1576)
Q Consensus 1429 ~~~i~ald~D~~~~~vYWsD~~~-~~I~r~~l~~-~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~ 1506 (1576)
...+.+|+||++++++|.+.... ..|+.+...- .....+.......-....+..|.+|++|+.+++||.....
T Consensus 117 N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~e----- 191 (248)
T PF06977_consen 117 NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDE----- 191 (248)
T ss_dssp SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETT-----
T ss_pred CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECC-----
Confidence 34578999999999999985543 3577665411 1111111111100011235579999999999999999764
Q ss_pred CCCeEEEEEcCCCceEEEe-e-------CCCCCceEEEEecCCCeEEEEec
Q psy948 1507 PKGKVMVAHNDGRYRRSLV-S-------ENLESPSSIALDPTLGKMFWAET 1549 (1576)
Q Consensus 1507 ~~~~I~v~~ldG~~~~~lv-~-------~~l~~P~~IavDp~~G~LYWTD~ 1549 (1576)
...|.+.+.+|+....+- . ..+.||-|||+|+ .|.||.+--
T Consensus 192 -s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE 240 (248)
T PF06977_consen 192 -SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE 240 (248)
T ss_dssp -TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET
T ss_pred -CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC
Confidence 578999999998655443 2 2467999999997 699998863
No 37
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.077 Score=61.81 Aligned_cols=298 Identities=13% Similarity=0.084 Sum_probs=159.5
Q ss_pred CCeEEEEeccCCceEe----cccccCCcceEEEeCCcceEEEecC-CCcCeEEEEecCCC-CcEEEEeccCCCC-CcceE
Q psy948 1174 SIKLDVAELDGTNRKT----LKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGS-NFTRILTHEDDIA-WPNAL 1246 (1576)
Q Consensus 1174 ~~~I~v~~ldG~~r~~----l~~~l~~P~~iavdP~~g~lywtd~-g~~~~I~ra~mdGs-~~~~iv~~~~~l~-~P~gL 1246 (1576)
+..|.|..++....+. +...+.+|..|+++|....||-... +....|..-..|+. .+-+++......+ -|.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4567777877544332 2567899999999999999998754 34567777777764 4444444333334 44889
Q ss_pred EEeccCCeEEEEcCCCCeEEEEeC--CCCceEEEEeCCCccceeEEeeeCCeEEEeccCCCcceeeccccccc-ccccee
Q psy948 1247 TLDYFTERLYWADAHLDYIASVDL--DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNARE-IQAGIL 1323 (1576)
Q Consensus 1247 aiD~~~~rlYw~D~~~~~I~s~~~--dG~~r~~v~~~~~~~~P~~lavfed~lYwtd~~~~~i~~~~k~~~~~-~~~~~~ 1323 (1576)
++|..++-||.+.-....|.+.-+ +|.-..++.. .+..+.. .+....
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~------------------------------~~h~g~~p~~rQ~~ 144 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV------------------------------VKHTGSGPHERQES 144 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceee------------------------------eecCCCCCCccccC
Confidence 999988889988888887777655 3433322210 0000000 000000
Q ss_pred cccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCC-CceEEEcCCCcEecCCCCCceeccCCce
Q psy948 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLN-GTYACSCNAGFTLSDGLSGVCKANDNKL 1402 (1576)
Q Consensus 1324 ~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~-gsy~C~Cp~G~~l~d~~~~~C~~~~~~~ 1402 (1576)
.++ |.=.-+| +.|.+.|..|.- ..
T Consensus 145 ~h~-----------------------------------------H~a~~tP~~~~l~v~DLG~D--------------ri 169 (346)
T COG2706 145 PHV-----------------------------------------HSANFTPDGRYLVVPDLGTD--------------RI 169 (346)
T ss_pred Ccc-----------------------------------------ceeeeCCCCCEEEEeecCCc--------------eE
Confidence 000 0000011 223333332210 11
Q ss_pred EEEEecCCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccc---eeeeec
Q psy948 1403 TIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQ---DLGIKS 1479 (1576)
Q Consensus 1403 ~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~---~~~~~~ 1479 (1576)
+++... ..++... ... .+....-+.=|.|.+..+..|.+..-.++|.-...+.. .+++..-+.+ .-.+.+
T Consensus 170 ~~y~~~-dg~L~~~----~~~-~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 170 FLYDLD-DGKLTPA----DPA-EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred EEEEcc-cCccccc----ccc-ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCC
Confidence 111111 1111000 000 01111223445677777777777666666655444442 1221110101 112334
Q ss_pred cCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEc--CCCceEEEee--CCCCCceEEEEecCCCeEEEEecCCCCcE
Q psy948 1480 IGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHN--DGRYRRSLVS--ENLESPSSIALDPTLGKMFWAETGASPRI 1555 (1576)
Q Consensus 1480 ~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~l--dG~~~~~lv~--~~l~~P~~IavDp~~G~LYWTD~g~~~~I 1555 (1576)
....-.|.|...++-||-.+++ .+.|.+... +|...+.+-. +....||+..++|...+|+-+...+. .|
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg------~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd-~i 315 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRG------HDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD-NI 315 (346)
T ss_pred CCceeEEEECCCCCEEEEecCC------CCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC-cE
Confidence 4556789999999999999987 345666654 4443333322 45566999999999999999987544 36
Q ss_pred EEeecCCC-CcEEEEe
Q psy948 1556 ESAWMDGS-HRSATQI 1570 (1576)
Q Consensus 1556 era~mDGs-~r~~i~~ 1570 (1576)
..-..|.. .+..+..
T Consensus 316 ~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 316 TVFERDKETGRLTLLG 331 (346)
T ss_pred EEEEEcCCCceEEecc
Confidence 66666654 3444433
No 38
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.30 E-value=0.051 Score=64.02 Aligned_cols=104 Identities=16% Similarity=0.240 Sum_probs=65.9
Q ss_pred cCCcEEEEeecccceeEEEeecccccceeeecc--cceee-eec-cCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEE
Q psy948 1439 PVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGF--GQDLG-IKS-IGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVA 1514 (1576)
Q Consensus 1439 ~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~--~~~~~-~~~-~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~ 1514 (1576)
+....|||.-....++|++...-.......... ...+. +.. .....|+|+|. .++||+++.+ .+.|..-
T Consensus 140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~------~~aI~~w 212 (287)
T PF03022_consen 140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVE------QNAIGCW 212 (287)
T ss_dssp TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECC------CTEEEEE
T ss_pred CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCC------CCeEEEE
Confidence 344789999888888998865443332222111 11111 111 23668999997 9999999986 5889999
Q ss_pred EcCCC----ceEEEee-CC-CCCceEEEEec-CCCeEEEEec
Q psy948 1515 HNDGR----YRRSLVS-EN-LESPSSIALDP-TLGKMFWAET 1549 (1576)
Q Consensus 1515 ~ldG~----~~~~lv~-~~-l~~P~~IavDp-~~G~LYWTD~ 1549 (1576)
+.++. ..++|+. .. |..|-+|++++ ..|+||.+--
T Consensus 213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred eCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 99982 3345554 44 89999999997 5789999874
No 39
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.29 E-value=0.47 Score=55.49 Aligned_cols=126 Identities=7% Similarity=-0.035 Sum_probs=73.8
Q ss_pred cceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCe
Q psy948 1431 RIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGK 1510 (1576)
Q Consensus 1431 ~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~ 1510 (1576)
.+..+.|.+..+.||.+....+.|+..++.......... ....-.......|.+|+++...+.+|.+... .++
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~------~~~ 230 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGP------ANR 230 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee-ecccccccccCCccceEECCCCCEEEEEcCC------CCe
Confidence 345677777777777665455666555543221100000 0000000012257789999888888987653 357
Q ss_pred EEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCCCCc
Q psy948 1511 VMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565 (1576)
Q Consensus 1511 I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r 1565 (1576)
|.+.++........+. .-..|.+|++.|...+||-+. +....|...++++...
T Consensus 231 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~-~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 231 VAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTN-GVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEc-CCCCeEEEEECCCCcE
Confidence 8888875433222222 224688999999888888765 3344788888887664
No 40
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.28 E-value=0.00086 Score=63.63 Aligned_cols=76 Identities=28% Similarity=0.468 Sum_probs=57.9
Q ss_pred eeeecCCCCeEEEeecCCC-----------CCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEecCCCC
Q psy948 1485 AIAVDWIAHNIYWTVSDRS-----------GSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASP 1553 (1576)
Q Consensus 1485 glAVDwv~~nLYWTD~~~~-----------~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g~~~ 1553 (1576)
+|+|+..++.|||||+... .....+++...++..+.-++|+ .+|.-|.||||.|...+|+.++.+..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~~~- 79 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETGRY- 79 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGGGT-
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEeccCc-
Confidence 6899988899999998543 1234688999999887666666 68999999999999999999998765
Q ss_pred cEEEeecCC
Q psy948 1554 RIESAWMDG 1562 (1576)
Q Consensus 1554 ~Iera~mDG 1562 (1576)
+|.|..|.|
T Consensus 80 Ri~rywl~G 88 (89)
T PF03088_consen 80 RILRYWLKG 88 (89)
T ss_dssp EEEEEESSS
T ss_pred eEEEEEEeC
Confidence 999999998
No 41
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.22 E-value=0.58 Score=56.42 Aligned_cols=252 Identities=12% Similarity=0.105 Sum_probs=135.6
Q ss_pred CCCCcceEEEeccCCeEEEEcC---------CCCeEEEEeCCCCceE-EEEeC-------CCccceeEEeeeCCeEEEec
Q psy948 1239 DIAWPNALTLDYFTERLYWADA---------HLDYIASVDLDGKHKH-IVISG-------QKVPHVFALTLFEDHIYWTD 1301 (1576)
Q Consensus 1239 ~l~~P~gLaiD~~~~rlYw~D~---------~~~~I~s~~~dG~~r~-~v~~~-------~~~~~P~~lavfed~lYwtd 1301 (1576)
.-..|.|+ +-...+.||.+.. ..+.|+.++..-.... .+..+ ...++-|+|+-.+.+||..+
T Consensus 45 ~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n 123 (352)
T TIGR02658 45 GGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ 123 (352)
T ss_pred ccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec
Confidence 34689997 9889999999999 8899999888754432 22211 11223466666788999999
Q ss_pred cC-CCcceeeccccccccccceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCCCceEEE
Q psy948 1302 WN-TKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACS 1380 (1576)
Q Consensus 1302 ~~-~~~i~~~~k~~~~~~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~ 1380 (1576)
.. ..+|..++.-+++.+...- + +.|.++=.....++.=.
T Consensus 124 ~~p~~~V~VvD~~~~kvv~ei~------v----------------------------------p~~~~vy~t~e~~~~~~ 163 (352)
T TIGR02658 124 FSPSPAVGVVDLEGKAFVRMMD------V----------------------------------PDCYHIFPTANDTFFMH 163 (352)
T ss_pred CCCCCEEEEEECCCCcEEEEEe------C----------------------------------CCCcEEEEecCCccEEE
Confidence 88 7888877766554332110 0 11222222222333334
Q ss_pred cCCCcEecCCCCCceeccCCceEEEEecCCcee--eecc-ccccccccccccccceeeecccCCcEEEEeecccceeEEE
Q psy948 1381 CNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIR--AYET-HKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 1457 (1576)
Q Consensus 1381 Cp~G~~l~d~~~~~C~~~~~~~~ll~s~~~~Ir--~i~~-~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~ 1457 (1576)
|.+|-.+. +.+....... .... +... ..+ ..++ .|-+..++.+|.... ++|+-+
T Consensus 164 ~~Dg~~~~---------------v~~d~~g~~~~~~~~vf~~~~-~~v---~~rP---~~~~~dg~~~~vs~e-G~V~~i 220 (352)
T TIGR02658 164 CRDGSLAK---------------VGYGTKGNPKIKPTEVFHPED-EYL---INHP---AYSNKSGRLVWPTYT-GKIFQI 220 (352)
T ss_pred eecCceEE---------------EEecCCCceEEeeeeeecCCc-ccc---ccCC---ceEcCCCcEEEEecC-CeEEEE
Confidence 44444332 0000000000 0000 0000 000 0122 334546777777666 888877
Q ss_pred eecccccceeeecccceeeee---ccCCcce---eeecCCCCeEEEeecCCC---CCCCCCeEEEEEcCCCceEEEeeCC
Q psy948 1458 FMLEAQKGQVQAGFGQDLGIK---SIGKLTA---IAVDWIAHNIYWTVSDRS---GSKPKGKVMVAHNDGRYRRSLVSEN 1528 (1576)
Q Consensus 1458 ~l~~~~~~~v~~~~~~~~~~~---~~~~p~g---lAVDwv~~nLYWTD~~~~---~~~~~~~I~v~~ldG~~~~~lv~~~ 1528 (1576)
++.+...... .... .+... ..-.|.| ||+..-++.||....++. +....+.|.|.++....+..-+..
T Consensus 221 d~~~~~~~~~-~~~~-~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v- 297 (352)
T TIGR02658 221 DLSSGDAKFL-PAIE-AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL- 297 (352)
T ss_pred ecCCCcceec-ceee-eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-
Confidence 7654332111 0000 00000 0114555 999999999999543321 111236788888766544443433
Q ss_pred CCCceEEEEecCCC-eEEEEecCCCCcEEEe
Q psy948 1529 LESPSSIALDPTLG-KMFWAETGASPRIESA 1558 (1576)
Q Consensus 1529 l~~P~~IavDp~~G-~LYWTD~g~~~~Iera 1558 (1576)
-..|.+|+|.|... +||-|.+..+ .|...
T Consensus 298 G~~~~~iavS~Dgkp~lyvtn~~s~-~VsVi 327 (352)
T TIGR02658 298 GHEIDSINVSQDAKPLLYALSTGDK-TLYIF 327 (352)
T ss_pred CCceeeEEECCCCCeEEEEeCCCCC-cEEEE
Confidence 35789999999999 8888886543 34433
No 42
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.091 Score=64.77 Aligned_cols=238 Identities=11% Similarity=0.095 Sum_probs=140.5
Q ss_pred CCCcceEEEeccCCeEEEEcCCCCeEEEEeCCCCceEEEEeCCCccceeEEeee--CCeEEEeccCCCcceeeccccccc
Q psy948 1240 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNARE 1317 (1576)
Q Consensus 1240 l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG~~r~~v~~~~~~~~P~~lavf--ed~lYwtd~~~~~i~~~~k~~~~~ 1317 (1576)
..+|.+++++.....+||+....+.|..++.- .+............|.+++++ ..++|.+......|..++.-+.+.
T Consensus 30 ~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 30 GRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCCCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 45999999999999999999999966666665 443333223334778888884 567999998877777766211111
Q ss_pred cccceecccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccccccccCCCceEEEcCCCcEecCCCCCceec
Q psy948 1318 IQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKA 1397 (1576)
Q Consensus 1318 ~~~~~~~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~~~~C~~ 1397 (1576)
..... .| . -|.+.......
T Consensus 109 ~~~~~-------vG---~---------------------------------------------~P~~~~~~~~~------ 127 (381)
T COG3391 109 LGSIP-------VG---L---------------------------------------------GPVGLAVDPDG------ 127 (381)
T ss_pred eeEee-------ec---c---------------------------------------------CCceEEECCCC------
Confidence 10000 00 0 12222222111
Q ss_pred cCCceEEEEec--CCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeeccccee
Q psy948 1398 NDNKLTIVYSN--GPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDL 1475 (1576)
Q Consensus 1398 ~~~~~~ll~s~--~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~ 1475 (1576)
+.+++.-.. ...+..+..........+.....+..+++++..+++|.++...+.|.-.+..+.. +.. .....
T Consensus 128 --~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~---v~~-~~~~~ 201 (381)
T COG3391 128 --KYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS---VVR-GSVGS 201 (381)
T ss_pred --CEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcc---eec-ccccc
Confidence 122222221 1222223222221111111112348899999999999999888888765533221 111 00011
Q ss_pred eeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEE--eeCCCCCceEEEEecCCCeEEEEecC
Q psy948 1476 GIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSL--VSENLESPSSIALDPTLGKMFWAETG 1550 (1576)
Q Consensus 1476 ~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~l--v~~~l~~P~~IavDp~~G~LYWTD~g 1550 (1576)
.+.-...|.+++|+..+.++|-++.... .++|.+.++........ ....+ +|.+|+++|...++|-+...
T Consensus 202 ~~~~~~~P~~i~v~~~g~~~yV~~~~~~----~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 202 LVGVGTGPAGIAVDPDGNRVYVANDGSG----SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred ccccCCCCceEEECCCCCEEEEEeccCC----CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecC
Confidence 2334568999999999999999987521 24677777665543332 33556 89999999999999988654
No 43
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.93 E-value=0.14 Score=63.86 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=83.3
Q ss_pred eecccCCcEEEEeec--ccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCC--CCCe
Q psy948 1435 LDIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSK--PKGK 1510 (1576)
Q Consensus 1435 ld~D~~~~~vYWsD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~--~~~~ 1510 (1576)
..|.+..++||++.. +...|+++.+++....++.. .+.. ..++.+-++.|.|+........ ....
T Consensus 282 p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--------~g~~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~ 350 (419)
T PRK04043 282 GNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--------HGKN---NSSVSTYKNYIVYSSRETNNEFGKNTFN 350 (419)
T ss_pred cEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--------CCCc---CceECCCCCEEEEEEcCCCcccCCCCcE
Confidence 357788888888753 33478988887654433321 1111 2367777888888864321100 1258
Q ss_pred EEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEEe--cCCCCC
Q psy948 1511 VMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQI--SNRQAP 1576 (1576)
Q Consensus 1511 I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~~--~~~~~P 1576 (1576)
|.+.+++|...+.|....... ..+..|...+|+|+.. +....|...++||..+..|.. .+++.|
T Consensus 351 I~v~d~~~g~~~~LT~~~~~~--~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~~p 417 (419)
T PRK04043 351 LYLISTNSDYIRRLTANGVNQ--FPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSI 417 (419)
T ss_pred EEEEECCCCCeEECCCCCCcC--CeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccCCC
Confidence 999999888777676544333 4667887777877764 555689999999998776653 556665
No 44
>KOG1520|consensus
Probab=96.85 E-value=0.0028 Score=74.59 Aligned_cols=132 Identities=20% Similarity=0.277 Sum_probs=88.2
Q ss_pred ccceeeecccCCcEEEEeecccceeEEEeecccccceee-ecccceeeeeccCCcceeeecCCCCeEEEeecCCC-----
Q psy948 1430 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQ-AGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRS----- 1503 (1576)
Q Consensus 1430 ~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~-~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~----- 1503 (1576)
.++.+|+|+..++.||.+|...+-. .+...+.....+. ...++. +.-..+|.||. ++.|||||+...
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlGL~-~V~p~g~~a~~l~~~~~G~~-----~kf~N~ldI~~-~g~vyFTDSSsk~~~rd 187 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLGLL-KVGPEGGLAELLADEAEGKP-----FKFLNDLDIDP-EGVVYFTDSSSKYDRRD 187 (376)
T ss_pred CCcceEEeccCCCeEEEEecceeeE-EECCCCCcceeccccccCee-----eeecCceeEcC-CCeEEEeccccccchhh
Confidence 3678999999999999999987744 3443332211111 111111 22356899998 999999998642
Q ss_pred ------CCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCCCCc---EEEEe
Q psy948 1504 ------GSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR---SATQI 1570 (1576)
Q Consensus 1504 ------~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r---~~i~~ 1570 (1576)
..+.++++...+...+.-++|+ .+|.=|.||||-|...++-.++.+. .+|.|..+.|... .+++.
T Consensus 188 ~~~a~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~Et~~-~ri~rywi~g~k~gt~EvFa~ 261 (376)
T KOG1520|consen 188 FVFAALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAETTT-ARIKRYWIKGPKAGTSEVFAE 261 (376)
T ss_pred eEEeeecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEeecc-ceeeeeEecCCccCchhhHhh
Confidence 1112344444443333334444 7899999999999999999999764 4899999999876 55544
No 45
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.81 E-value=0.069 Score=61.20 Aligned_cols=71 Identities=18% Similarity=0.101 Sum_probs=39.5
Q ss_pred cccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeec
Q psy948 1429 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVS 1500 (1576)
Q Consensus 1429 ~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~ 1500 (1576)
...+.+|.||++++++|......+.|......|..........+..-....+.+|+|||+|. .++||.+..
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE 240 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE 240 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC
Confidence 45688999999999999998888888877755432211110000000113467899999996 689999975
No 46
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.035 Score=65.75 Aligned_cols=116 Identities=22% Similarity=0.372 Sum_probs=82.6
Q ss_pred cCCcceEEEeCCcceEEEecCC-----Cc-----CeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCCeEEEEcCCCC
Q psy948 1194 IQDPRGITLHPGIGYVYFSSWN-----LQ-----AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD 1263 (1576)
Q Consensus 1194 l~~P~~iavdP~~g~lywtd~g-----~~-----~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~rlYw~D~~~~ 1263 (1576)
+..|..+.|+|. |.+|+++.+ .. ..++|..-+|+..+ ++. ..+..||||++...++.||++|...+
T Consensus 110 ~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~--~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 110 LNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLD--DDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred cCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eec--CcEEecCceEECCCCCEEEEEeCCCC
Confidence 467999999998 888888877 21 36888877665433 332 45999999999999999999999999
Q ss_pred eEEEEeCC---CC--ceE-EEEeCCCccceeEEeeeCCeEEEec--cCCCcceeeccc
Q psy948 1264 YIASVDLD---GK--HKH-IVISGQKVPHVFALTLFEDHIYWTD--WNTKSINRADKF 1313 (1576)
Q Consensus 1264 ~I~s~~~d---G~--~r~-~v~~~~~~~~P~~lavfed~lYwtd--~~~~~i~~~~k~ 1313 (1576)
+|..+.++ |. +++ .+.....-..|=++++..+-.||+. |....|.+.+..
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 99999998 32 222 2332234456889999877666642 333356655554
No 47
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=96.64 E-value=1.2 Score=52.38 Aligned_cols=133 Identities=12% Similarity=0.059 Sum_probs=86.9
Q ss_pred ceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeE
Q psy948 1432 IEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKV 1511 (1576)
Q Consensus 1432 i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I 1511 (1576)
+....++|..+.|+-.|.+..+|+-..++... +.... ...+.....|+.|++-+..+-.|-+.. ..++|
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~---L~~~~--~~~v~~G~GPRHi~FHpn~k~aY~v~E------L~stV 215 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK---LTPAD--PAEVKPGAGPRHIVFHPNGKYAYLVNE------LNSTV 215 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCc---ccccc--ccccCCCCCcceEEEcCCCcEEEEEec------cCCEE
Confidence 55566777778888888888877665555221 11111 111244568999999999999999875 47899
Q ss_pred EEEEcCCCce--EEEe-----e---CCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCCC---Cc-EEEEecCCCCC
Q psy948 1512 MVAHNDGRYR--RSLV-----S---ENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGS---HR-SATQISNRQAP 1576 (1576)
Q Consensus 1512 ~v~~ldG~~~--~~lv-----~---~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs---~r-~~i~~~~~~~P 1576 (1576)
.|...++... +.|- . .+-.+-.+|.|.|.-.|||-++.|.. .|....+|=. .+ ...++++.++|
T Consensus 216 ~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d-sI~~f~V~~~~g~L~~~~~~~teg~~P 293 (346)
T COG2706 216 DVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD-SIAVFSVDPDGGKLELVGITPTEGQFP 293 (346)
T ss_pred EEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC-eEEEEEEcCCCCEEEEEEEeccCCcCC
Confidence 9998877422 1221 1 23334468999999999999998865 6777766633 22 23335666655
No 48
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.25 E-value=0.062 Score=63.34 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=87.1
Q ss_pred CCceeeeccccccccccccccccceeeecccCC-----cEEEEeecccceeEEEeecccccceeeecc------ccee--
Q psy948 1409 GPEIRAYETHKRRFRDVISDERRIEALDIDPVD-----EIIYWVDSYDRNIRRSFMLEAQKGQVQAGF------GQDL-- 1475 (1576)
Q Consensus 1409 ~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~-----~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~------~~~~-- 1475 (1576)
...|+++.+.... +.....+..|.+|.+. +.+|.+|.....|...++.......+.... ...+
T Consensus 44 ~~li~~~~~p~~~----~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i 119 (287)
T PF03022_consen 44 NQLIRRYPFPPDI----APPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTI 119 (287)
T ss_dssp TCEEEEEE--CCC----S-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEE
T ss_pred CcEEEEEECChHH----cccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceec
Confidence 3345666655332 1233455666666644 589999988777766666543322221110 0111
Q ss_pred ---eeeccCCcceeeecCCC---CeEEEeecCCCCCCCCCeEEEEEc----CCCceE--------EEeeCCCCCceEEEE
Q psy948 1476 ---GIKSIGKLTAIAVDWIA---HNIYWTVSDRSGSKPKGKVMVAHN----DGRYRR--------SLVSENLESPSSIAL 1537 (1576)
Q Consensus 1476 ---~~~~~~~p~glAVDwv~---~nLYWTD~~~~~~~~~~~I~v~~l----dG~~~~--------~lv~~~l~~P~~Iav 1537 (1576)
.+...+...|||+..++ +.|||.-.. ..++..+.. +.+... ..+.....+..|+++
T Consensus 120 ~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 120 GGESFQWPDGIFGIALSPISPDGRWLYFHPLS------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp TTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cCceEecCCCccccccCCCCCCccEEEEEeCC------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12223447789997754 579999753 345666531 222111 112111245679999
Q ss_pred ecCCCeEEEEecCCCCcEEEeecCC-----CCcEEEEecC-CCCC
Q psy948 1538 DPTLGKMFWAETGASPRIESAWMDG-----SHRSATQISN-RQAP 1576 (1576)
Q Consensus 1538 Dp~~G~LYWTD~g~~~~Iera~mDG-----s~r~~i~~~~-~~~P 1576 (1576)
|+ .|.||+++...+ .|.+.+.++ ..+.++.+.+ |+||
T Consensus 194 D~-~G~ly~~~~~~~-aI~~w~~~~~~~~~~~~~l~~d~~~l~~p 236 (287)
T PF03022_consen 194 DP-NGNLYFTDVEQN-AIGCWDPDGPYTPENFEILAQDPRTLQWP 236 (287)
T ss_dssp ET-TTEEEEEECCCT-EEEEEETTTSB-GCCEEEEEE-CC-GSSE
T ss_pred CC-CCcEEEecCCCC-eEEEEeCCCCcCccchheeEEcCceeecc
Confidence 98 999999998765 899999999 3445555666 8887
No 49
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.15 E-value=0.057 Score=65.17 Aligned_cols=123 Identities=19% Similarity=0.309 Sum_probs=75.2
Q ss_pred ccccceeeeccc---CCcEEEEeeccc--------ceeEEEeecccccceeeecccc--eeee--eccCCcceeeecCCC
Q psy948 1428 DERRIEALDIDP---VDEIIYWVDSYD--------RNIRRSFMLEAQKGQVQAGFGQ--DLGI--KSIGKLTAIAVDWIA 1492 (1576)
Q Consensus 1428 ~~~~i~ald~D~---~~~~vYWsD~~~--------~~I~r~~l~~~~~~~v~~~~~~--~~~~--~~~~~p~glAVDwv~ 1492 (1576)
....+.+|++++ .++.||.+-... .+|.|..+.... ..+...... .+.. ...+...+|++++-.
T Consensus 47 ~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~-~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG 125 (331)
T PF07995_consen 47 GERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGD-GDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG 125 (331)
T ss_dssp TTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTS-CEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS
T ss_pred ccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCc-cccccceEEEEEeCCCCCCCCCCccccCCCCC
Confidence 345678889988 357888765532 478887776541 111100000 0000 134555689999854
Q ss_pred CeEEEeecCCC-------CCCCCCeEEEEEcCCCc------------eEEEeeCCCCCceEEEEecCCCeEEEEecCCC
Q psy948 1493 HNIYWTVSDRS-------GSKPKGKVMVAHNDGRY------------RRSLVSENLESPSSIALDPTLGKMFWAETGAS 1552 (1576)
Q Consensus 1493 ~nLYWTD~~~~-------~~~~~~~I~v~~ldG~~------------~~~lv~~~l~~P~~IavDp~~G~LYWTD~g~~ 1552 (1576)
+||++-.... .....++|.+.+++|+. ...|++.++.+|.+||+||.+|.||.+|.|..
T Consensus 126 -~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 126 -KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp -EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred -cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence 9999954332 13346899999999972 33566789999999999999999999998754
No 50
>PRK02889 tolB translocation protein TolB; Provisional
Probab=96.00 E-value=2.5 Score=53.02 Aligned_cols=121 Identities=13% Similarity=0.071 Sum_probs=74.7
Q ss_pred eeecccCCcEEEEeec--ccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeE
Q psy948 1434 ALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKV 1511 (1576)
Q Consensus 1434 ald~D~~~~~vYWsD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I 1511 (1576)
...|.+...+|+++.. +...|+.+.+.+.....+. ..+ ......++.+.++.|+++.... ....|
T Consensus 288 ~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--------~~g-~~~~~~~~SpDG~~Ia~~s~~~----g~~~I 354 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT--------FTG-SYNTSPRISPDGKLLAYISRVG----GAFKL 354 (427)
T ss_pred CeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe--------cCC-CCcCceEECCCCCEEEEEEccC----CcEEE
Confidence 3456777777776532 2346776665443222211 111 1223457777788898886431 12478
Q ss_pred EEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEE
Q psy948 1512 MVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQ 1569 (1576)
Q Consensus 1512 ~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~ 1569 (1576)
.+.++++...+.|..... ..+++..|...+||++-. +....|...+++|..+..|.
T Consensus 355 ~v~d~~~g~~~~lt~~~~--~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~ 411 (427)
T PRK02889 355 YVQDLATGQVTALTDTTR--DESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS 411 (427)
T ss_pred EEEECCCCCeEEccCCCC--ccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence 999988776666654322 356788998888888763 44457999999999887775
No 51
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.96 E-value=0.94 Score=57.20 Aligned_cols=124 Identities=10% Similarity=0.072 Sum_probs=77.7
Q ss_pred ceeeecccCCcEEEEeec--ccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCC
Q psy948 1432 IEALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKG 1509 (1576)
Q Consensus 1432 i~ald~D~~~~~vYWsD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~ 1509 (1576)
.....|.+....|+++.. +...|+++++.+.....+. .. .....+.++.+.++.||++.... ...
T Consensus 308 ~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt--------~~-g~~~~~~~~SpDG~~l~~~~~~~----g~~ 374 (448)
T PRK04792 308 DTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT--------FE-GEQNLGGSITPDGRSMIMVNRTN----GKF 374 (448)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe--------cC-CCCCcCeeECCCCCEEEEEEecC----Cce
Confidence 344567777777877643 2346887776543322221 11 11233457777788999986531 135
Q ss_pred eEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEEe
Q psy948 1510 KVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQI 1570 (1576)
Q Consensus 1510 ~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~~ 1570 (1576)
.|.+.++++...+.|....++ ...++.|...+|+|+.. +....|...+++|..++.|..
T Consensus 375 ~I~~~dl~~g~~~~lt~~~~d--~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 375 NIARQDLETGAMQVLTSTRLD--ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred EEEEEECCCCCeEEccCCCCC--CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 788889888765555433222 23478888888888764 334579999999998887753
No 52
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.91 E-value=0.23 Score=61.71 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=76.9
Q ss_pred cccceeeecccC------CcEEEEeec---------ccceeEEEeecccccceeeecccceeeeec-----cCCcceeee
Q psy948 1429 ERRIEALDIDPV------DEIIYWVDS---------YDRNIRRSFMLEAQKGQVQAGFGQDLGIKS-----IGKLTAIAV 1488 (1576)
Q Consensus 1429 ~~~i~ald~D~~------~~~vYWsD~---------~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~-----~~~p~glAV 1488 (1576)
..-+.+|+++|. ++.||++-. ...+|.|..++.... .+. ....++.. .+.-..|++
T Consensus 78 e~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~-~l~---~~~~Il~~lP~~~~H~GgrI~F 153 (454)
T TIGR03606 78 HNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQ-TLE---KPVDLLAGLPAGNDHNGGRLVF 153 (454)
T ss_pred CCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCC-ccc---cceEEEecCCCCCCcCCceEEE
Confidence 445678888754 457888742 245788887753211 110 01111221 244568999
Q ss_pred cCCCCeEEEeecCCCC--------------------------CCCCCeEEEEEcCCCc----------eEEEeeCCCCCc
Q psy948 1489 DWIAHNIYWTVSDRSG--------------------------SKPKGKVMVAHNDGRY----------RRSLVSENLESP 1532 (1576)
Q Consensus 1489 Dwv~~nLYWTD~~~~~--------------------------~~~~~~I~v~~ldG~~----------~~~lv~~~l~~P 1532 (1576)
+.. ++||++-.++.. ....++|.+.+.||+. +..|.+.++.+|
T Consensus 154 gPD-G~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp 232 (454)
T TIGR03606 154 GPD-GKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNP 232 (454)
T ss_pred CCC-CcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEecccc
Confidence 874 579998544310 1235689999999973 345777899999
Q ss_pred eEEEEecCCCeEEEEecCCC
Q psy948 1533 SSIALDPTLGKMFWAETGAS 1552 (1576)
Q Consensus 1533 ~~IavDp~~G~LYWTD~g~~ 1552 (1576)
.+|++|| .|.||.+|.|..
T Consensus 233 ~Gla~dp-~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 233 QGLAFTP-DGTLYASEQGPN 251 (454)
T ss_pred ceeEECC-CCCEEEEecCCC
Confidence 9999999 799999998864
No 53
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.91 E-value=2.6 Score=52.98 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=73.6
Q ss_pred eeecccCCcEEEEeec--ccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeE
Q psy948 1434 ALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKV 1511 (1576)
Q Consensus 1434 ald~D~~~~~vYWsD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I 1511 (1576)
...|.+...+|+++.. +...|+.+++.+.....+.. ..+....+++-+.++.|+++.... ....|
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~---------~~~~~~~~~~SpdG~~ia~~~~~~----~~~~i 360 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF---------GGGRYSTPVWSPRGDLIAFTKQGG----GQFSI 360 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec---------CCCcccCeEECCCCCEEEEEEcCC----CceEE
Confidence 3456666666665432 23467776665433222211 111233456666778888876431 13579
Q ss_pred EEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCC---CcEEEeecCCCCcEEEE
Q psy948 1512 MVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GAS---PRIESAWMDGSHRSATQ 1569 (1576)
Q Consensus 1512 ~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~---~~Iera~mDGs~r~~i~ 1569 (1576)
.+.+++|...+.|... ....++++.|...+|+++-. +.. ++|.+.+++|...+.|.
T Consensus 361 ~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 361 GVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred EEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 9999988766555432 23567788998888888653 222 58999999998877664
No 54
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.89 E-value=0.078 Score=65.05 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=81.4
Q ss_pred cccceeeecccCCcEEEEeecc-----------cc-eeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEE
Q psy948 1429 ERRIEALDIDPVDEIIYWVDSY-----------DR-NIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIY 1496 (1576)
Q Consensus 1429 ~~~i~ald~D~~~~~vYWsD~~-----------~~-~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLY 1496 (1576)
+.++++|++|.. ++||.++.. .+ +|++...... .+... ...+...++..|.|||+.. .+ ||
T Consensus 13 ~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg-dG~~d---~~~vfa~~l~~p~Gi~~~~-~G-ly 85 (367)
T TIGR02604 13 LRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADG-DGKYD---KSNVFAEELSMVTGLAVAV-GG-VY 85 (367)
T ss_pred cCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC-CCCcc---eeEEeecCCCCccceeEec-CC-EE
Confidence 567889999976 579988742 22 6665543211 11110 1123345678999999974 34 99
Q ss_pred EeecCCCCCCCCCeEEEE-EcCCC-----ceEEEeeC---C----CCCceEEEEecCCCeEEEEecCC------------
Q psy948 1497 WTVSDRSGSKPKGKVMVA-HNDGR-----YRRSLVSE---N----LESPSSIALDPTLGKMFWAETGA------------ 1551 (1576)
Q Consensus 1497 WTD~~~~~~~~~~~I~v~-~ldG~-----~~~~lv~~---~----l~~P~~IavDp~~G~LYWTD~g~------------ 1551 (1576)
.++. ..|.+. ..+|. .+++|+.. . ...|.+|+++| .|+||+++...
T Consensus 86 V~~~--------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~ 156 (367)
T TIGR02604 86 VATP--------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSD 156 (367)
T ss_pred EeCC--------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCcc
Confidence 9875 345544 44442 34455541 1 23378999998 58999988621
Q ss_pred ------CCcEEEeecCCCCcEEEEecCCCCC
Q psy948 1552 ------SPRIESAWMDGSHRSATQISNRQAP 1576 (1576)
Q Consensus 1552 ------~~~Iera~mDGs~r~~i~~~~~~~P 1576 (1576)
...|.|.+.||+..+++. ..++.|
T Consensus 157 ~~~~~~~g~i~r~~pdg~~~e~~a-~G~rnp 186 (367)
T TIGR02604 157 ESRQGLGGGLFRYNPDGGKLRVVA-HGFQNP 186 (367)
T ss_pred CcccccCceEEEEecCCCeEEEEe-cCcCCC
Confidence 146999999998877665 446644
No 55
>KOG1219|consensus
Probab=95.88 E-value=0.16 Score=69.91 Aligned_cols=49 Identities=31% Similarity=0.930 Sum_probs=26.2
Q ss_pred cceeeccCCceeccCCCcccc--CCCCccCCCCccccccccCCCceEEEcCCCcEe
Q psy948 1334 GYLCTCYQGFIIDKNNAKKCL--DVDECATGIHHCSQVCTNLNGTYACSCNAGFTL 1387 (1576)
Q Consensus 1334 ~~~C~C~~G~~~~~~~~~~c~--d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l 1387 (1576)
+|.|.||.||. ++.|+ .++||+.+..+=+.+|+|.+|+|.|-|.+||.+
T Consensus 3923 ~f~CnC~~gyT-----G~~Ce~~Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g~~g 3973 (4289)
T KOG1219|consen 3923 GFLCNCPNGYT-----GKRCEARGISECSKNVCGTGGQCINIPGSFHCNCTPGILG 3973 (4289)
T ss_pred CeeEeCCCCcc-----CceeecccccccccccccCCceeeccCCceEeccChhHhc
Confidence 35555555553 35553 255665433222456666666666666666654
No 56
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=95.85 E-value=0.0053 Score=42.96 Aligned_cols=24 Identities=33% Similarity=0.984 Sum_probs=20.9
Q ss_pred cceeeccCCceeccCCCccccCCCC
Q psy948 1334 GYLCTCYQGFIIDKNNAKKCLDVDE 1358 (1576)
Q Consensus 1334 ~~~C~C~~G~~~~~~~~~~c~d~ne 1358 (1576)
+|+|+|++||.+.. ++++|+||||
T Consensus 1 sy~C~C~~Gy~l~~-d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSP-DGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCC-CCCccccCCC
Confidence 38999999999986 4689999987
No 57
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=95.68 E-value=0.0077 Score=42.19 Aligned_cols=24 Identities=38% Similarity=0.852 Sum_probs=19.0
Q ss_pred ceEEEcCCCcEecCCCCCceeccCC
Q psy948 1376 TYACSCNAGFTLSDGLSGVCKANDN 1400 (1576)
Q Consensus 1376 sy~C~Cp~G~~l~d~~~~~C~~~~~ 1400 (1576)
||+|.|++||+|..+.+ +|.++++
T Consensus 1 sy~C~C~~Gy~l~~d~~-~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGR-SCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCC-ccccCCC
Confidence 69999999999985443 7987653
No 58
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.63 E-value=3 Score=52.42 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=76.5
Q ss_pred eeeecccCCcEEEEeecc--cceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCe
Q psy948 1433 EALDIDPVDEIIYWVDSY--DRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGK 1510 (1576)
Q Consensus 1433 ~ald~D~~~~~vYWsD~~--~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~ 1510 (1576)
..++|.+....|+++... ...|+.+++.+.....+. . .......+++.+.++.||++.... ....
T Consensus 295 ~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt--------~-~g~~~~~~~~SpDG~~Ia~~~~~~----~~~~ 361 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT--------F-QGNYNARASVSPDGKKIAMVHGSG----GQYR 361 (433)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee--------c-CCCCccCEEECCCCCEEEEEECCC----Ccee
Confidence 345677777777665322 335777766543322211 1 112334567777788999986421 1347
Q ss_pred EEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEEe
Q psy948 1511 VMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQI 1570 (1576)
Q Consensus 1511 I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~~ 1570 (1576)
|.+.++++...+.|.... ...+++..|...+|+|+.. +...+|...+++|..++.|..
T Consensus 362 I~v~d~~~g~~~~Lt~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 362 IAVMDLSTGSVRTLTPGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred EEEEECCCCCeEECCCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 999999777655443322 2345678888888777754 445689999999998877764
No 59
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.61 E-value=2.8 Score=52.24 Aligned_cols=120 Identities=14% Similarity=0.052 Sum_probs=73.5
Q ss_pred ecccCCcEEEEeec--ccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEE
Q psy948 1436 DIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMV 1513 (1576)
Q Consensus 1436 d~D~~~~~vYWsD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v 1513 (1576)
.|.+..++|+++.. +...|+.+.+.+.....+. ........+++.+.++.|+++.... ...+|.+
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~---------~~~~~~~~~~~spdg~~i~~~~~~~----~~~~i~~ 350 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT---------FRGGYNASPSWSPDGDLIAFVHREG----GGFNIAV 350 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---------cCCCCccCeEECCCCCEEEEEEccC----CceEEEE
Confidence 45555666766532 2235776665543221111 1123445677777788999997631 1357889
Q ss_pred EEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEecC-CCCcEEEeecCCCCcEEEEe
Q psy948 1514 AHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETG-ASPRIESAWMDGSHRSATQI 1570 (1576)
Q Consensus 1514 ~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g-~~~~Iera~mDGs~r~~i~~ 1570 (1576)
.++++...+.|.... .....++.|..++|+|+... ....|+...++|..+..|..
T Consensus 351 ~d~~~~~~~~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 351 MDLDGGGERVLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred EeCCCCCeEEccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 999886555444322 23455788888899998763 33468888899987766643
No 60
>PRK03629 tolB translocation protein TolB; Provisional
Probab=95.52 E-value=4.8 Score=50.59 Aligned_cols=124 Identities=7% Similarity=0.025 Sum_probs=75.2
Q ss_pred ceeeecccCCcEEEEeec--ccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCC
Q psy948 1432 IEALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKG 1509 (1576)
Q Consensus 1432 i~ald~D~~~~~vYWsD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~ 1509 (1576)
+....|.+..++|+++.. +...|+++++.+.....+. .........++.+.++.|+++.... ...
T Consensus 289 ~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt---------~~~~~~~~~~~SpDG~~Ia~~~~~~----g~~ 355 (429)
T PRK03629 289 NTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT---------WEGSQNQDADVSSDGKFMVMVSSNG----GQQ 355 (429)
T ss_pred cCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee---------cCCCCccCEEECCCCCEEEEEEccC----CCc
Confidence 345566777776755432 2346777766554322221 1112234566767778888875431 135
Q ss_pred eEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEEe
Q psy948 1510 KVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQI 1570 (1576)
Q Consensus 1510 ~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~~ 1570 (1576)
.|.+.++++...+.|...... ...++.|...+|+++.. +....|+..++||..++.|..
T Consensus 356 ~I~~~dl~~g~~~~Lt~~~~~--~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~ 415 (429)
T PRK03629 356 HIAKQDLATGGVQVLTDTFLD--ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA 415 (429)
T ss_pred eEEEEECCCCCeEEeCCCCCC--CCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence 688889887766655532212 24567788778887764 444578899999999887753
No 61
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=95.51 E-value=0.035 Score=52.84 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=55.1
Q ss_pred CCccccCCeEEEEeCCCceEEEeec-CCc--ccccccEEEEecCCCCcEEEEecCCCcccceeEEeecCCCcEEEeeCCC
Q psy948 1 MDFHYKENRFYFADVAAKTIYRSRV-GST--EKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL 77 (1576)
Q Consensus 1 ~~~d~~~~~~y~~d~~~~~i~~~~~-~~~--~~~~~~i~r~~mdG~~~~~ii~~~~~~~~p~~l~id~~~~~lyw~D~~~ 77 (1576)
||++..++.|||||...+.=. ..+ -.. .+....+.|.++.....++++ .+|..|||+||....+-|+.+....
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~-~~~~~~~le~~~~GRll~ydp~t~~~~vl~---~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDR-RDWVYDLLEGRPTGRLLRYDPSTKETTVLL---DGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp EEE-TTT--EEEEES-SS--T-TGHHHHHHHT---EEEEEEETTTTEEEEEE---EEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred eeEecCCCEEEEEeCccccCc-cceeeeeecCCCCcCEEEEECCCCeEEEeh---hCCCccCeEEEcCCCCEEEEEeccC
Confidence 356666789999998665310 000 000 012234888888888877777 4899999999999999999999999
Q ss_pred CcEEEEcCCC
Q psy948 78 DYIASVDLDG 87 (1576)
Q Consensus 78 ~~I~~~~~~g 87 (1576)
.+|.+--+.|
T Consensus 79 ~Ri~rywl~G 88 (89)
T PF03088_consen 79 YRILRYWLKG 88 (89)
T ss_dssp TEEEEEESSS
T ss_pred ceEEEEEEeC
Confidence 9998876665
No 62
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.48 E-value=0.011 Score=46.86 Aligned_cols=31 Identities=48% Similarity=1.174 Sum_probs=26.7
Q ss_pred cCccccccCCCcccc--cceeCCCeeeeecCCCcc
Q psy948 1076 NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYN 1108 (1576)
Q Consensus 1076 didEC~~~~~~~Csq--~C~Nt~Gsy~C~C~~Gy~ 1108 (1576)
++|||.. ...|.+ +|+|+.|+|+|.|++||.
T Consensus 1 d~~~C~~--~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 1 DIDECAS--GNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CcccCcC--CCCcCCCCEeECCCCCeEeECCCCCc
Confidence 4788974 267877 899999999999999997
No 63
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.44 E-value=2 Score=53.84 Aligned_cols=122 Identities=10% Similarity=0.025 Sum_probs=76.7
Q ss_pred eeeecccCCcEEEEeecc--cceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCe
Q psy948 1433 EALDIDPVDEIIYWVDSY--DRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGK 1510 (1576)
Q Consensus 1433 ~ald~D~~~~~vYWsD~~--~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~ 1510 (1576)
....|.+..++||++... ...|+++.+.+.....+. .. .......++.+.++.||++.... ....
T Consensus 290 ~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt--------~~-~~~~~~~~~Spdg~~i~~~~~~~----~~~~ 356 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT--------FV-GNYNARPRLSADGKTLVMVHRQD----GNFH 356 (430)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--------cC-CCCccceEECCCCCEEEEEEccC----CceE
Confidence 345677777778776432 346887776544322221 11 11223456777788999986531 1346
Q ss_pred EEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEE
Q psy948 1511 VMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQ 1569 (1576)
Q Consensus 1511 I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~ 1569 (1576)
|.+.++++...+.|.....+ ....+.|...+|+++.. +...+|....++|...+.|.
T Consensus 357 l~~~dl~tg~~~~lt~~~~~--~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 357 VAAQDLQRGSVRILTDTSLD--ESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred EEEEECCCCCEEEccCCCCC--CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 88899988766666543222 24578888888888875 34468999999998876664
No 64
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=1.3 Score=50.92 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=72.2
Q ss_pred ccceeeecccCCcEEEEeecc-cceeEEEeeccccc-ceeeeccc--ceeeeeccCCcceeeecCCCCeEEEeecCCCCC
Q psy948 1430 RRIEALDIDPVDEIIYWVDSY-DRNIRRSFMLEAQK-GQVQAGFG--QDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGS 1505 (1576)
Q Consensus 1430 ~~i~ald~D~~~~~vYWsD~~-~~~I~r~~l~~~~~-~~v~~~~~--~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~ 1505 (1576)
.-..+|+||++++++|++... .-.|+.+......- ..+..... ..+ .+..+.|+++|..+++|+.-..+
T Consensus 181 ~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~---f~~DvSgl~~~~~~~~LLVLS~E---- 253 (316)
T COG3204 181 KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL---FVLDVSGLEFNAITNSLLVLSDE---- 253 (316)
T ss_pred cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce---EeeccccceecCCCCcEEEEecC----
Confidence 457899999999999988543 44677665322111 11111000 011 14567899999999999988654
Q ss_pred CCCCeEEEEEcCCCceEEEe--------eCCCCCceEEEEecCCCeEEEEe
Q psy948 1506 KPKGKVMVAHNDGRYRRSLV--------SENLESPSSIALDPTLGKMFWAE 1548 (1576)
Q Consensus 1506 ~~~~~I~v~~ldG~~~~~lv--------~~~l~~P~~IavDp~~G~LYWTD 1548 (1576)
...+..++++|..+..|. ...+.||-|||.|. .|.||.+-
T Consensus 254 --Sr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd-~g~lYIvS 301 (316)
T COG3204 254 --SRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDD-DGNLYIVS 301 (316)
T ss_pred --CceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECC-CCCEEEEe
Confidence 466777888888655543 24567888999996 68888775
No 65
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.27 E-value=2.6 Score=53.27 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=52.0
Q ss_pred CeEEEEeccCCceEecccccCCcceEEEeCCcceEEEecCC-CcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCC
Q psy948 1175 IKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE 1253 (1576)
Q Consensus 1175 ~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~lywtd~g-~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~ 1253 (1576)
.+|.+++.+|.+.++|...-..-...+..|...+|+|+... ..++|...++++..++++.... +.....++....+
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~ 274 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGK 274 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCC
Confidence 47888999998877775443333456788988889887553 4578999998876655543221 1122345555555
Q ss_pred eEEEE
Q psy948 1254 RLYWA 1258 (1576)
Q Consensus 1254 rlYw~ 1258 (1576)
+|+++
T Consensus 275 ~La~~ 279 (448)
T PRK04792 275 KLALV 279 (448)
T ss_pred EEEEE
Confidence 66554
No 66
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.24 E-value=0.43 Score=59.34 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=73.5
Q ss_pred cccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCC------CCeEEEe
Q psy948 1425 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWI------AHNIYWT 1498 (1576)
Q Consensus 1425 ~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv------~~nLYWT 1498 (1576)
+...+..+++|+|.+. ++||.+....++|+++...+.. .+.+......+...+.+.+-|||+++- ++.||++
T Consensus 25 va~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~-~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 25 LLSGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGE-VKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EECCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCc-eeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 4456778999999875 5888888777899887543322 222222211111124567899999954 4678888
Q ss_pred ecCCCCCC---CCCeEEEEEcCCC-----ceEEEeeC----CCCCceEEEEecCCCeEEEEec
Q psy948 1499 VSDRSGSK---PKGKVMVAHNDGR-----YRRSLVSE----NLESPSSIALDPTLGKMFWAET 1549 (1576)
Q Consensus 1499 D~~~~~~~---~~~~I~v~~ldG~-----~~~~lv~~----~l~~P~~IavDp~~G~LYWTD~ 1549 (1576)
-+...... ...+|.+..++.. ..++|+.. ....-..|+++| .|+||++-.
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~G 164 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIG 164 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEEC
Confidence 54322111 1467888877532 23455532 112346899998 589999853
No 67
>KOG4260|consensus
Probab=95.23 E-value=0.0089 Score=65.85 Aligned_cols=40 Identities=35% Similarity=0.705 Sum_probs=33.8
Q ss_pred CCCCcccCccccccCCCccc--ccceeCCCeeeeecCCCcccC
Q psy948 1070 DEPLHCNVDECAKVETNQCG--HKCVDTLTGYYCECNTGYNDD 1110 (1576)
Q Consensus 1070 De~~~cdidEC~~~~~~~Cs--q~C~Nt~Gsy~C~C~~Gy~l~ 1110 (1576)
||..+.|||||+. ++..|. |+|+|+.|||+|.+.+||...
T Consensus 229 de~gCvDvnEC~~-ep~~c~~~qfCvNteGSf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 229 DEEGCVDVNECQN-EPAPCKAHQFCVNTEGSFKCEDKEGYKKG 270 (350)
T ss_pred cccccccHHHHhc-CCCCCChhheeecCCCceEecccccccCC
Confidence 4555567999997 688885 699999999999999999874
No 68
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.10 E-value=2.6 Score=51.39 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=73.1
Q ss_pred cccccceeeecccCCcEEEEeeccccee------EEEeecccccc------------------eeeeccc-ceeeeeccC
Q psy948 1427 SDERRIEALDIDPVDEIIYWVDSYDRNI------RRSFMLEAQKG------------------QVQAGFG-QDLGIKSIG 1481 (1576)
Q Consensus 1427 ~~~~~i~ald~D~~~~~vYWsD~~~~~I------~r~~l~~~~~~------------------~v~~~~~-~~~~~~~~~ 1481 (1576)
...+|+.++++++.++.||.++-+...+ .+. ..|.+.+ ++..... -........
T Consensus 236 ~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i-~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ 314 (399)
T COG2133 236 YGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSI-RPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHI 314 (399)
T ss_pred eccCCccceeecCCCCcEEEEecCCCcccCccccccc-ccCCccCCceeccCcccCccccCCCcccccccCCceeecccc
Confidence 4678999999999999999998776222 211 1111100 0000000 001111122
Q ss_pred CcceeeecCCC------CeEEEeecCCCCCCCCCeEEEEEcCCCceEEE---eeC-CCCCceEEEEecCCCeEEEEecCC
Q psy948 1482 KLTAIAVDWIA------HNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSL---VSE-NLESPSSIALDPTLGKMFWAETGA 1551 (1576)
Q Consensus 1482 ~p~glAVDwv~------~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~l---v~~-~l~~P~~IavDp~~G~LYWTD~g~ 1551 (1576)
-|.|||+=--. +.||....+ .-.+.+.+++|.++.++ |.. ...+|++++|.|. |.||.++-..
T Consensus 315 ApsGmaFy~G~~fP~~r~~lfV~~hg------sw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~D-Gallv~~D~~ 387 (399)
T COG2133 315 APSGMAFYTGDLFPAYRGDLFVGAHG------SWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPD-GALLVLTDQG 387 (399)
T ss_pred ccceeEEecCCcCccccCcEEEEeec------ceeEEEeccCCCcceEEEEEEecCCCCcccceEECCC-CeEEEeecCC
Confidence 34566663111 456666543 23466688888854333 332 2269999999985 7777777654
Q ss_pred CCcEEEeecCC
Q psy948 1552 SPRIESAWMDG 1562 (1576)
Q Consensus 1552 ~~~Iera~mDG 1562 (1576)
..+|.|....|
T Consensus 388 ~g~i~Rv~~~~ 398 (399)
T COG2133 388 DGRILRVSYAG 398 (399)
T ss_pred CCeEEEecCCC
Confidence 66899988765
No 69
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=94.91 E-value=0.018 Score=65.51 Aligned_cols=41 Identities=41% Similarity=0.894 Sum_probs=36.9
Q ss_pred CccccCCCCccCCCCccccccccCCCceEEEcCCCcEecCC
Q psy948 1350 AKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDG 1390 (1576)
Q Consensus 1350 ~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~ 1390 (1576)
.+.|.++++|...++.|.|.|++++|+|.|+|+.||+|..+
T Consensus 181 ~~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~ 221 (224)
T cd01475 181 GKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLED 221 (224)
T ss_pred cccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCC
Confidence 45788999999888999999999999999999999999643
No 70
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=94.89 E-value=12 Score=45.25 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=61.8
Q ss_pred CeEEEEeccCCceEec--ccccCCcceEEEeCCcceEEEecCC--------CcCeEEEEecC-CCCcEEEEeccC----C
Q psy948 1175 IKLDVAELDGTNRKTL--KTAIQDPRGITLHPGIGYVYFSSWN--------LQAYIGKIGMD-GSNFTRILTHED----D 1239 (1576)
Q Consensus 1175 ~~I~v~~ldG~~r~~l--~~~l~~P~~iavdP~~g~lywtd~g--------~~~~I~ra~md-Gs~~~~iv~~~~----~ 1239 (1576)
++|.|.+.+. .+++ +..-..|+++ +.|..+.||.+... ....|...+.. +.-...|..... .
T Consensus 27 ~~v~ViD~~~--~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEA--GRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCC--CEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 5666665544 3433 3444689997 99999999987651 12344444332 122222322111 2
Q ss_pred CCCcceEEEeccCCeEEEEcCC-CCeEEEEeCCCCce
Q psy948 1240 IAWPNALTLDYFTERLYWADAH-LDYIASVDLDGKHK 1275 (1576)
Q Consensus 1240 l~~P~gLaiD~~~~rlYw~D~~-~~~I~s~~~dG~~r 1275 (1576)
...|..+++...++.||+.+.. .+.+..+++.....
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv 140 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF 140 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence 4567799999999999999977 88888888876543
No 71
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=94.85 E-value=0.011 Score=46.04 Aligned_cols=28 Identities=32% Similarity=0.844 Sum_probs=21.8
Q ss_pred CCCcccc--cceeCCCeeeeecCCCcccCC
Q psy948 1084 ETNQCGH--KCVDTLTGYYCECNTGYNDDD 1111 (1576)
Q Consensus 1084 ~~~~Csq--~C~Nt~Gsy~C~C~~Gy~l~~ 1111 (1576)
+++.|+. .|+|+.++|+|.|.+||.++.
T Consensus 4 ~~~~C~~nA~C~~~~~~~~C~C~~Gy~GdG 33 (36)
T PF12947_consen 4 NNGGCHPNATCTNTGGSYTCTCKPGYEGDG 33 (36)
T ss_dssp GGGGS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred CCCCCCCCcEeecCCCCEEeECCCCCccCC
Confidence 4678876 899999999999999999864
No 72
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=94.82 E-value=0.021 Score=64.96 Aligned_cols=37 Identities=30% Similarity=0.644 Sum_probs=32.4
Q ss_pred cCccccccCCCcccccceeCCCeeeeecCCCcccCCCC
Q psy948 1076 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIG 1113 (1576)
Q Consensus 1076 didEC~~~~~~~Csq~C~Nt~Gsy~C~C~~Gy~l~~~~ 1113 (1576)
+++||.. .++.|.|.|.|+.|+|.|.|++||.|.+++
T Consensus 186 ~~~~C~~-~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~ 222 (224)
T cd01475 186 VPDLCAT-LSHVCQQVCISTPGSYLCACTEGYALLEDN 222 (224)
T ss_pred CchhhcC-CCCCccceEEcCCCCEEeECCCCccCCCCC
Confidence 4899986 578899999999999999999999986544
No 73
>KOG1520|consensus
Probab=94.61 E-value=0.21 Score=59.27 Aligned_cols=112 Identities=14% Similarity=0.232 Sum_probs=70.0
Q ss_pred cEEEEeecccceeEEEeecccccceeeecccceeeee-ccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCc
Q psy948 1442 EIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIK-SIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRY 1520 (1576)
Q Consensus 1442 ~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~-~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~ 1520 (1576)
..|+|+-...+-|.++....+.......... .+..+ -=+.|-|||++-.+++||.+|.. --+.++...|..
T Consensus 76 ~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~-~~~~e~~CGRPLGl~f~~~ggdL~VaDAY-------lGL~~V~p~g~~ 147 (376)
T KOG1520|consen 76 RILKYTGNDDGWVKFADTKDSTNRSQCCDPG-SFETEPLCGRPLGIRFDKKGGDLYVADAY-------LGLLKVGPEGGL 147 (376)
T ss_pred ceEEEeccCceEEEEEeccccccccccCCCc-ceecccccCCcceEEeccCCCeEEEEecc-------eeeEEECCCCCc
Confidence 4568877667777666553222111111100 11111 12799999999999999999985 237777887776
Q ss_pred eEEEeeCCCCCc----eEEEEecCCCeEEEEecCCC---CcEEEeecCC
Q psy948 1521 RRSLVSENLESP----SSIALDPTLGKMFWAETGAS---PRIESAWMDG 1562 (1576)
Q Consensus 1521 ~~~lv~~~l~~P----~~IavDp~~G~LYWTD~g~~---~~Iera~mDG 1562 (1576)
-+.|......+| .++.|++ +|.+||||..+. ..+.-+-|.|
T Consensus 148 a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g 195 (376)
T KOG1520|consen 148 AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEG 195 (376)
T ss_pred ceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecC
Confidence 555554444455 4899999 999999996431 2355555555
No 74
>KOG2397|consensus
Probab=94.45 E-value=0.045 Score=65.98 Aligned_cols=68 Identities=41% Similarity=0.674 Sum_probs=55.6
Q ss_pred ceeecCCCCceecCcccCCCCCCCCCCCCCCCCCCCCCCCCCeEeeCCC----CeecCCCCCCCcCCCCCCCCccC
Q psy948 303 QHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNG----NCTPSASICDGVDDCRDGSDEKH 374 (1576)
Q Consensus 303 ~~~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~~c~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~dC~dgsDE~~ 374 (1576)
.|+|.. ..+=|++.++=|..-||.||||||- ...|+.+.|+|.|. .=|+.+.+=||+-||=|||||..
T Consensus 44 ~~~CLd-gs~~i~f~qlNDd~CDC~DGsDEPG---tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 44 MFKCLD-GSKTISFSQLNDDSCDCLDGSDEPG---TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL 115 (480)
T ss_pred ceeecc-CCcccCHHHhccccccCCCCCCCCc---cccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence 577763 4567899999999999999999974 35788999999763 46788888889999999999864
No 75
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.37 E-value=8 Score=48.34 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=41.9
Q ss_pred CCeEEEEeccCCceEecccccCCcceEEEeCCcce-EEEecCC-CcCeEEEEecCCCCcEEEEe
Q psy948 1174 SIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGY-VYFSSWN-LQAYIGKIGMDGSNFTRILT 1235 (1576)
Q Consensus 1174 ~~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~-lywtd~g-~~~~I~ra~mdGs~~~~iv~ 1235 (1576)
..+|.+++.||.+.+++..+- .-...+..|.... +|.+... ..+.|...++.+..+++|..
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~ 230 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS 230 (419)
T ss_pred cceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec
Confidence 568999999999988775442 2123455666553 6766554 57899999998776666543
No 76
>KOG3509|consensus
Probab=94.20 E-value=0.052 Score=71.47 Aligned_cols=105 Identities=37% Similarity=0.798 Sum_probs=92.0
Q ss_pred ccccCcccccccCCCCCCCccccccccCCCCCCCCCceecCCCeEEeCcccCCCCCCCCCCCCCCCccc----ccccCCc
Q psy948 517 RCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGG----FQCKNGT 592 (1576)
Q Consensus 517 ~Ci~~~~~Cdg~~dC~d~sDE~~~~c~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C~~----~~C~~~~ 592 (1576)
.|...++.|++..|+.+.+|+.+..+ ..+.+++++|+|.++++....|.||...++.+++++.+|.. ..|.+..
T Consensus 2 ~c~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 79 (964)
T KOG3509|consen 2 ECVKNRYACDRQPDCRDRSDVANDPA--IGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTE 79 (964)
T ss_pred chhhhhhhhccchhhHhhcccCCCcc--ccccCCcchhccCCccccCchhhhccccccCCCCCcCCccccccccccCCcc
Confidence 46677889999999999999987544 34789999999999999999999999999999998888863 3677888
Q ss_pred eecCCC-ceecceeccCCCCCCCCCCCCCCCC
Q psy948 593 FQCSSG-HCIAAYFRCDGDRDCRDLSDEMNCP 623 (1576)
Q Consensus 593 f~C~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~ 623 (1576)
++|.+- ++......|+|.++|.++++|..+-
T Consensus 80 ~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 111 (964)
T KOG3509|consen 80 TQCRDRLRCNPQSFQCDGTNDCKDGSDEVGCK 111 (964)
T ss_pred cccccchhcCCccccccCCCCCCccchhcccc
Confidence 899886 7999999999999999999998764
No 77
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=93.90 E-value=0.026 Score=44.06 Aligned_cols=29 Identities=34% Similarity=0.945 Sum_probs=22.6
Q ss_pred ccCCCCccc--cccccCCCceEEEcCCCcEe
Q psy948 1359 CATGIHHCS--QVCTNLNGTYACSCNAGFTL 1387 (1576)
Q Consensus 1359 C~~~~~~Cs--~lC~n~~gsy~C~Cp~G~~l 1387 (1576)
|+.++++|+ .+|++++++|+|+|++||.+
T Consensus 1 C~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~G 31 (36)
T PF12947_consen 1 CLENNGGCHPNATCTNTGGSYTCTCKPGYEG 31 (36)
T ss_dssp TTTGGGGS-TTCEEEE-TTSEEEEE-CEEEC
T ss_pred CCCCCCCCCCCcEeecCCCCEEeECCCCCcc
Confidence 455678884 69999999999999999997
No 78
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.82 E-value=21 Score=43.47 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=61.8
Q ss_pred eccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-C-CCCcE
Q psy948 1478 KSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-G-ASPRI 1555 (1576)
Q Consensus 1478 ~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g-~~~~I 1555 (1576)
.+++..++++|+..++.+-.++. +..|.|.+++....+.+=++...--..++++|...++=++=- | -...|
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaNd-------r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~I 471 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVAND-------RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSI 471 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEcC-------ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeE
Confidence 45778889999988887777764 478999999877776665566666678888988887765542 1 12469
Q ss_pred EEeecCCCCcEEEE
Q psy948 1556 ESAWMDGSHRSATQ 1569 (1576)
Q Consensus 1556 era~mDGs~r~~i~ 1569 (1576)
.-++|+|.....+.
T Consensus 472 klydm~~~Kiy~vT 485 (668)
T COG4946 472 KLYDMDGGKIYDVT 485 (668)
T ss_pred EEEecCCCeEEEec
Confidence 99999997655444
No 79
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=93.69 E-value=0.057 Score=42.64 Aligned_cols=30 Identities=47% Similarity=1.218 Sum_probs=24.9
Q ss_pred CCCccCCCCcccc--ccccCCCceEEEcCCCcE
Q psy948 1356 VDECATGIHHCSQ--VCTNLNGTYACSCNAGFT 1386 (1576)
Q Consensus 1356 ~neC~~~~~~Cs~--lC~n~~gsy~C~Cp~G~~ 1386 (1576)
+++|... ..|.+ +|+++.|+|.|.|+.||.
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred cccCcCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence 5777653 56765 899999999999999998
No 80
>KOG2397|consensus
Probab=93.59 E-value=0.053 Score=65.42 Aligned_cols=68 Identities=41% Similarity=0.581 Sum_probs=59.2
Q ss_pred CceecCCC-eEEeCcccCCCCCCCCCCCCCCCcccccccCCceecCCC----ceecceeccCCCCCCCCCCCCCC
Q psy948 552 SEFQCKNG-KCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSG----HCIAAYFRCDGDRDCRDLSDEMN 621 (1576)
Q Consensus 552 ~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~Cdg~~dC~d~sDE~~ 621 (1576)
..|+|.+| +=|+.+.+-|..-||.|||||.+= ..|+.+.|.|.+- .=|+.+.+=||+-||-|||||..
T Consensus 43 ~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGt--sACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 43 SMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGT--SACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL 115 (480)
T ss_pred cceeeccCCcccCHHHhccccccCCCCCCCCcc--ccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence 47999987 679999999999999999999653 3699999999762 47999999999999999999954
No 81
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.57 E-value=9.1 Score=48.12 Aligned_cols=81 Identities=16% Similarity=0.105 Sum_probs=49.5
Q ss_pred CeEEEEeccCCceEecccccCCcceEEEeCCcceEEEecCC-CcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCC
Q psy948 1175 IKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE 1253 (1576)
Q Consensus 1175 ~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~lywtd~g-~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~ 1253 (1576)
.+|.+.+++|.+.+.|...-..-...+..|...+|+++.+. ..+.|.+.++++..++++.... +....+++....+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~---g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR---GINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC---CCccCceECCCCC
Confidence 46888888888777765432223455778888888887654 3578988888876655543221 1122345555555
Q ss_pred eEEEE
Q psy948 1254 RLYWA 1258 (1576)
Q Consensus 1254 rlYw~ 1258 (1576)
+|+++
T Consensus 261 ~l~~~ 265 (433)
T PRK04922 261 RLALT 265 (433)
T ss_pred EEEEE
Confidence 55543
No 82
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.55 E-value=12 Score=47.01 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=55.1
Q ss_pred CCeEEEEeccCCceEecccccCCcceEEEeCCcceEEEecCC-CcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccC
Q psy948 1174 SIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFT 1252 (1576)
Q Consensus 1174 ~~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~lywtd~g-~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~ 1252 (1576)
...|.+++++|.+++.|..+-..-...+..|....|.|+.+. ..+.|....+++..++.+..... ....+++....
T Consensus 178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPDG 254 (429)
T PRK03629 178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPDG 254 (429)
T ss_pred ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCCC
Confidence 457999999999888875544445577888988877776543 45788888888766555543221 12235666666
Q ss_pred CeEEEEc
Q psy948 1253 ERLYWAD 1259 (1576)
Q Consensus 1253 ~rlYw~D 1259 (1576)
++|+++.
T Consensus 255 ~~La~~~ 261 (429)
T PRK03629 255 SKLAFAL 261 (429)
T ss_pred CEEEEEE
Confidence 6777653
No 83
>smart00181 EGF Epidermal growth factor-like domain.
Probab=93.54 E-value=0.057 Score=41.72 Aligned_cols=25 Identities=36% Similarity=1.035 Sum_probs=22.4
Q ss_pred Ccccc-cceeCCCeeeeecCCCcccC
Q psy948 1086 NQCGH-KCVDTLTGYYCECNTGYNDD 1110 (1576)
Q Consensus 1086 ~~Csq-~C~Nt~Gsy~C~C~~Gy~l~ 1110 (1576)
+.|.+ .|+++.|+|+|+|++||++.
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCccC
Confidence 57887 89999999999999999874
No 84
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.39 E-value=13 Score=46.69 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=50.7
Q ss_pred CeEEEEeccCCceEecccccCCcceEEEeCCcceEEEecCC-CcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCC
Q psy948 1175 IKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE 1253 (1576)
Q Consensus 1175 ~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~lywtd~g-~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~ 1253 (1576)
.+|.+++++|...+.|...-......+..|...+|+|+.+. ..+.|.+.++++..++.+.... +.....+.....+
T Consensus 179 ~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~---g~~~~~~~SpDG~ 255 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE---GLNGAPAWSPDGS 255 (430)
T ss_pred eEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC---CCcCCeEECCCCC
Confidence 46888999998877665433333566888888888776553 4578999999877655543221 1122344444455
Q ss_pred eEEEE
Q psy948 1254 RLYWA 1258 (1576)
Q Consensus 1254 rlYw~ 1258 (1576)
+|+++
T Consensus 256 ~la~~ 260 (430)
T PRK00178 256 KLAFV 260 (430)
T ss_pred EEEEE
Confidence 55543
No 85
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=93.34 E-value=0.068 Score=41.72 Aligned_cols=31 Identities=48% Similarity=1.168 Sum_probs=25.6
Q ss_pred CccccccCCCcc--cccceeCCCeeeeecCCCccc
Q psy948 1077 VDECAKVETNQC--GHKCVDTLTGYYCECNTGYND 1109 (1576)
Q Consensus 1077 idEC~~~~~~~C--sq~C~Nt~Gsy~C~C~~Gy~l 1109 (1576)
+|||.. ...| .+.|+++.|+|+|.|++||.+
T Consensus 2 ~~~C~~--~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECAS--GNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCC--CCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 678873 1578 458999999999999999976
No 86
>KOG3509|consensus
Probab=93.25 E-value=0.073 Score=70.18 Aligned_cols=107 Identities=32% Similarity=0.727 Sum_probs=84.1
Q ss_pred ccCcccccCCCCCCCCCCCCCCCCCCC-CCCCccccCCCCeEeccccccCCcCCCCCCCCcchhccccccCCCCCCcccc
Q psy948 680 CIPKWLFCDGKDDCRDGSDELPQNCPK-CHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQC 758 (1576)
Q Consensus 680 Ci~~~~~Cdg~~dC~dgsDE~~~~c~~-c~~~~~f~C~~~~Ci~~~~~Cdg~~dC~d~sDE~~~~c~~~~~~C~~~~f~C 758 (1576)
|....+.|++..|+.+-+|+....+.. -..+++|.|.++++.-..|.||...+++.++++....+......|.+.+++|
T Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c 82 (964)
T KOG3509|consen 3 CVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQC 82 (964)
T ss_pred hhhhhhhhccchhhHhhcccCCCccccccCCcchhccCCccccCchhhhccccccCCCCCcCCccccccccccCCccccc
Confidence 334455666666666666664222211 1237899999999999999999999999999776655555667899999999
Q ss_pred cCC-ceecccccCCCCCCCCCCCCCcccC
Q psy948 759 KNG-KCIPAQWRCDHDEDCTDGSDEMECG 786 (1576)
Q Consensus 759 ~~g-~CI~~~~~CDg~~DC~dgsDE~~C~ 786 (1576)
.+- ++.+.+..|+|.++|.++++|..+-
T Consensus 83 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 111 (964)
T KOG3509|consen 83 RDRLRCNPQSFQCDGTNDCKDGSDEVGCK 111 (964)
T ss_pred ccchhcCCccccccCCCCCCccchhcccc
Confidence 986 8999999999999999999998764
No 87
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.54 E-value=4 Score=49.51 Aligned_cols=84 Identities=18% Similarity=0.272 Sum_probs=52.5
Q ss_pred eccCCcceeee--cCCCCeEEEeecCCCCCCCCCeEEEEEc----CCCceEEEee--CCCCCceEEEEecCCCeEEEEec
Q psy948 1478 KSIGKLTAIAV--DWIAHNIYWTVSDRSGSKPKGKVMVAHN----DGRYRRSLVS--ENLESPSSIALDPTLGKMFWAET 1549 (1576)
Q Consensus 1478 ~~~~~p~glAV--Dwv~~nLYWTD~~~~~~~~~~~I~v~~l----dG~~~~~lv~--~~l~~P~~IavDp~~G~LYWTD~ 1549 (1576)
..+..|.||++ +..++.+|-.-... .+.++...| +|+...++|. ..-.+|-|+|||.+.|+||..+.
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k-----~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE 227 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGK-----DGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEE 227 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEET-----TSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEET
T ss_pred cccccceeeEEeecCCCCcEEEEEecC-----CceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecC
Confidence 34567889998 45567787765432 355665554 4444555664 23468999999999999999996
Q ss_pred CCCCcEEEeecC---CCCcEEE
Q psy948 1550 GASPRIESAWMD---GSHRSAT 1568 (1576)
Q Consensus 1550 g~~~~Iera~mD---Gs~r~~i 1568 (1576)
.. -|||...+ |..++.|
T Consensus 228 ~~--GIW~y~Aep~~~~~~~~v 247 (381)
T PF02333_consen 228 DV--GIWRYDAEPEGGNDRTLV 247 (381)
T ss_dssp TT--EEEEEESSCCC-S--EEE
T ss_pred cc--EEEEEecCCCCCCcceee
Confidence 53 59999887 4455544
No 88
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=92.46 E-value=0.24 Score=36.43 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=23.9
Q ss_pred CCCcceEEEeccCCeEEEEcCCCCeEEE
Q psy948 1240 IAWPNALTLDYFTERLYWADAHLDYIAS 1267 (1576)
Q Consensus 1240 l~~P~gLaiD~~~~rlYw~D~~~~~I~s 1267 (1576)
+.+|.|||+| .+++||.+|...++|..
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 3589999999 99999999999988764
No 89
>PRK02889 tolB translocation protein TolB; Provisional
Probab=92.36 E-value=21 Score=44.73 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=40.8
Q ss_pred CCeEEEEeccCCceEecccccCCcceEEEeCCcceEEEecC-CCcCeEEEEecCCCCcEEE
Q psy948 1174 SIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRI 1233 (1576)
Q Consensus 1174 ~~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~lywtd~-g~~~~I~ra~mdGs~~~~i 1233 (1576)
..+|.+++.+|...+.|...-..-..++..|....|+++.. ...+.|...++++..++.+
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l 235 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV 235 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe
Confidence 46788999999887666433222345678888877777654 3457888888877665544
No 90
>PRK01029 tolB translocation protein TolB; Provisional
Probab=92.17 E-value=40 Score=42.35 Aligned_cols=83 Identities=17% Similarity=0.017 Sum_probs=51.4
Q ss_pred CCeEEEEeccCCceEecccccCCcceEEEeCCcc---eEEEecCCCcCeEEEEecCCCCcEEEEeccCCCCCcceEEEec
Q psy948 1174 SIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIG---YVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 1250 (1576)
Q Consensus 1174 ~~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g---~lywtd~g~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~ 1250 (1576)
...|.+++.||.+.+.|...-..-..-+..|... ++|.+.-...+.|....++|..+++|...... ....++-.
T Consensus 164 ~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~---~~~p~wSP 240 (428)
T PRK01029 164 QGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN---QLMPTFSP 240 (428)
T ss_pred cceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC---ccceEECC
Confidence 4579999999998877743211111224455543 56677766679999999999887777653222 22344555
Q ss_pred cCCeEEEEc
Q psy948 1251 FTERLYWAD 1259 (1576)
Q Consensus 1251 ~~~rlYw~D 1259 (1576)
..++|.|+-
T Consensus 241 DG~~Laf~s 249 (428)
T PRK01029 241 RKKLLAFIS 249 (428)
T ss_pred CCCEEEEEE
Confidence 555665544
No 91
>smart00181 EGF Epidermal growth factor-like domain.
Probab=92.16 E-value=0.12 Score=39.88 Aligned_cols=25 Identities=44% Similarity=1.010 Sum_probs=22.0
Q ss_pred Ccccc-ccccCCCceEEEcCCCcEec
Q psy948 1364 HHCSQ-VCTNLNGTYACSCNAGFTLS 1388 (1576)
Q Consensus 1364 ~~Cs~-lC~n~~gsy~C~Cp~G~~l~ 1388 (1576)
..|.+ .|++..++|+|.|+.||.+.
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCccC
Confidence 56766 89999999999999999874
No 92
>KOG4499|consensus
Probab=91.91 E-value=0.92 Score=50.06 Aligned_cols=94 Identities=15% Similarity=0.235 Sum_probs=71.9
Q ss_pred EecCCCCcEEEEeccCCCCCcceEEEeccCCeEEEEcCCCCeEEEEeCC-----CCceEEEEeC-----CCccceeEEee
Q psy948 1223 IGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-----GKHKHIVISG-----QKVPHVFALTL 1292 (1576)
Q Consensus 1223 a~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~d-----G~~r~~v~~~-----~~~~~P~~lav 1292 (1576)
..+.|...+.|. ..+.-||||+-|...+..|++|+-.-.|...+|| -++|++++.- ..-+-|-++++
T Consensus 143 ~~~~~h~v~~i~---~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I 219 (310)
T KOG4499|consen 143 SWLAGHQVELIW---NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI 219 (310)
T ss_pred EeccCCCceeee---hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE
Confidence 344454444443 4688999999999999999999999999888876 2478888732 12344667777
Q ss_pred e-CCeEEEeccCCCcceeeccccccccc
Q psy948 1293 F-EDHIYWTDWNTKSINRADKFNAREIQ 1319 (1576)
Q Consensus 1293 f-ed~lYwtd~~~~~i~~~~k~~~~~~~ 1319 (1576)
. +++||.+-|+..+|++++..+|+-..
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILL 247 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEE
Confidence 4 78999999999999999998887554
No 93
>KOG4260|consensus
Probab=90.87 E-value=0.12 Score=57.26 Aligned_cols=46 Identities=33% Similarity=0.877 Sum_probs=40.8
Q ss_pred ccCCceeccCCCccccCCCCccCCCCcc--ccccccCCCceEEEcCCCcEe
Q psy948 1339 CYQGFIIDKNNAKKCLDVDECATGIHHC--SQVCTNLNGTYACSCNAGFTL 1387 (1576)
Q Consensus 1339 C~~G~~~~~~~~~~c~d~neC~~~~~~C--s~lC~n~~gsy~C~Cp~G~~l 1387 (1576)
|..|+.++ ...|.|+|||...+.+| .++|+|+.|||+|.+.+||..
T Consensus 222 CkkGW~ld---e~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~ 269 (350)
T KOG4260|consen 222 CKKGWKLD---EEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK 269 (350)
T ss_pred hcccceec---ccccccHHHHhcCCCCCChhheeecCCCceEecccccccC
Confidence 78899886 35799999999888888 479999999999999999986
No 94
>KOG4499|consensus
Probab=90.58 E-value=1.8 Score=47.83 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=48.8
Q ss_pred ccceeeecccCCcEEEEeecccceeEEEe--ecc---cccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCC
Q psy948 1430 RRIEALDIDPVDEIIYWVDSYDRNIRRSF--MLE---AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSG 1504 (1576)
Q Consensus 1430 ~~i~ald~D~~~~~vYWsD~~~~~I~r~~--l~~---~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~ 1504 (1576)
....+|++|...+++|++|+..-+|.... ..+ +++..+..-.. ..-..--.|.||+||- .+|||.+--.
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk--~~~~e~~~PDGm~ID~-eG~L~Va~~n--- 231 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRK--SQPFESLEPDGMTIDT-EGNLYVATFN--- 231 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEecc--CCCcCCCCCCcceEcc-CCcEEEEEec---
Confidence 34568999999999999999888883332 222 11111111000 0001233689999995 8999999654
Q ss_pred CCCCCeEEEEEcC
Q psy948 1505 SKPKGKVMVAHND 1517 (1576)
Q Consensus 1505 ~~~~~~I~v~~ld 1517 (1576)
.++|...++.
T Consensus 232 ---g~~V~~~dp~ 241 (310)
T KOG4499|consen 232 ---GGTVQKVDPT 241 (310)
T ss_pred ---CcEEEEECCC
Confidence 5677777653
No 95
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=90.35 E-value=0.52 Score=34.67 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=22.3
Q ss_pred CCCceEEEEecCCCeEEEEecCCCCcEEE
Q psy948 1529 LESPSSIALDPTLGKMFWAETGASPRIES 1557 (1576)
Q Consensus 1529 l~~P~~IavDp~~G~LYWTD~g~~~~Ier 1557 (1576)
|..|.+|||+ ..|.||.+|.+.+ +|.+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~-rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNH-RVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCT-EEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCC-EEEE
Confidence 4689999999 7899999998765 6643
No 96
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=89.72 E-value=0.3 Score=37.99 Aligned_cols=31 Identities=48% Similarity=1.137 Sum_probs=24.4
Q ss_pred CCCccCCCCcc--ccccccCCCceEEEcCCCcEe
Q psy948 1356 VDECATGIHHC--SQVCTNLNGTYACSCNAGFTL 1387 (1576)
Q Consensus 1356 ~neC~~~~~~C--s~lC~n~~gsy~C~Cp~G~~l 1387 (1576)
+++|... ..| .+.|++..++|.|.|+.||.+
T Consensus 2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred cccCCCC-CCcCCCCEeECCCCCeEeECCCCCcC
Confidence 4667542 456 468999999999999999986
No 97
>PRK01742 tolB translocation protein TolB; Provisional
Probab=88.68 E-value=76 Score=39.86 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=52.1
Q ss_pred CeEEEEeccCCceEecccccCCcceEEEeCCcceEEEecCC-CcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCC
Q psy948 1175 IKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE 1253 (1576)
Q Consensus 1175 ~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~lywtd~g-~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~ 1253 (1576)
.+|.+++.+|.++++|...-..-..++..|...+|.|+.+. ..+.|...++.+..++.+..... .-..++.....+
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~ 260 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGS 260 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCC
Confidence 57889999999887775443344667889988888887664 34788888887665544432211 112344554555
Q ss_pred eEEEE
Q psy948 1254 RLYWA 1258 (1576)
Q Consensus 1254 rlYw~ 1258 (1576)
+|+++
T Consensus 261 ~La~~ 265 (429)
T PRK01742 261 RLAFA 265 (429)
T ss_pred EEEEE
Confidence 56554
No 98
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=88.66 E-value=0.38 Score=36.79 Aligned_cols=25 Identities=44% Similarity=1.023 Sum_probs=21.5
Q ss_pred Cccc--ccceeCCCeeeeecCCCcccC
Q psy948 1086 NQCG--HKCVDTLTGYYCECNTGYNDD 1110 (1576)
Q Consensus 1086 ~~Cs--q~C~Nt~Gsy~C~C~~Gy~l~ 1110 (1576)
..|. .+|+++.++|+|.|+.||.+.
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 5565 589999999999999999865
No 99
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=88.58 E-value=0.38 Score=36.79 Aligned_cols=25 Identities=40% Similarity=0.971 Sum_probs=21.2
Q ss_pred Cccc--cccccCCCceEEEcCCCcEec
Q psy948 1364 HHCS--QVCTNLNGTYACSCNAGFTLS 1388 (1576)
Q Consensus 1364 ~~Cs--~lC~n~~gsy~C~Cp~G~~l~ 1388 (1576)
..|. ++|++..++|+|.|+.||.+.
T Consensus 6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 6 NPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCEEecCCCCeEeECCCCCccc
Confidence 4554 789999999999999999875
No 100
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=87.86 E-value=11 Score=46.76 Aligned_cols=125 Identities=17% Similarity=0.120 Sum_probs=75.9
Q ss_pred cceeeecccCCcEEEEeeccc--ceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCC
Q psy948 1431 RIEALDIDPVDEIIYWVDSYD--RNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPK 1508 (1576)
Q Consensus 1431 ~i~ald~D~~~~~vYWsD~~~--~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~ 1508 (1576)
.+....+.+..++|+|+.... ..|+...+.+.....+. ...+...++++.+.++.||++.... ..
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---------~~~~~~~~~~~spDg~~l~~~~~~~----~~ 257 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---------SFPGMNGAPAFSPDGSKLAVSLSKD----GN 257 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---------cCCCCccceEECCCCCEEEEEECCC----CC
Confidence 355667888888888875433 46766665432211111 1112344567777777888875421 13
Q ss_pred CeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEE
Q psy948 1509 GKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQ 1569 (1576)
Q Consensus 1509 ~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~ 1569 (1576)
..|.+.++++...+.|.. ........+..|...+|+|+-. +..++|...+++|...+.|.
T Consensus 258 ~~i~~~d~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318 (417)
T ss_pred ccEEEEECCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 568889988766555543 2222345567777778887653 44568999999887655554
No 101
>PRK05137 tolB translocation protein TolB; Provisional
Probab=87.83 E-value=11 Score=47.56 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=80.1
Q ss_pred ccccceeeecccCCcEEEEeec--ccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCC
Q psy948 1428 DERRIEALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGS 1505 (1576)
Q Consensus 1428 ~~~~i~ald~D~~~~~vYWsD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~ 1505 (1576)
....+....+.+..++|+++.. +...|+..++.+.....+. ...+...+.++.+.++.|+++-...
T Consensus 200 ~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~---------~~~g~~~~~~~SPDG~~la~~~~~~--- 267 (435)
T PRK05137 200 GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG---------NFPGMTFAPRFSPDGRKVVMSLSQG--- 267 (435)
T ss_pred CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee---------cCCCcccCcEECCCCCEEEEEEecC---
Confidence 3345667778888888877643 3457877776543322211 0112334567777788888874321
Q ss_pred CCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEE-ecCCCCcEEEeecCCCCcEEEEe
Q psy948 1506 KPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWA-ETGASPRIESAWMDGSHRSATQI 1570 (1576)
Q Consensus 1506 ~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWT-D~g~~~~Iera~mDGs~r~~i~~ 1570 (1576)
....|.+.++++...+.|.. ........+..|...+|+++ +....++|++.+++|...+.|..
T Consensus 268 -g~~~Iy~~d~~~~~~~~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 268 -GNTDIYTMDLRSGTTTRLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred -CCceEEEEECCCCceEEccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec
Confidence 13579999998876666543 22334567788877766655 44446789999999887666553
No 102
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=87.66 E-value=0.36 Score=36.73 Aligned_cols=25 Identities=44% Similarity=1.116 Sum_probs=21.0
Q ss_pred Ccccc--cceeCC-CeeeeecCCCcccC
Q psy948 1086 NQCGH--KCVDTL-TGYYCECNTGYNDD 1110 (1576)
Q Consensus 1086 ~~Csq--~C~Nt~-Gsy~C~C~~Gy~l~ 1110 (1576)
.+|.+ .|++.. ++|+|.|++||.+.
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 46666 889988 99999999999864
No 103
>PRK01029 tolB translocation protein TolB; Provisional
Probab=87.38 E-value=90 Score=39.23 Aligned_cols=126 Identities=10% Similarity=-0.035 Sum_probs=76.3
Q ss_pred eeecccCCcEEEEeec--ccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeE
Q psy948 1434 ALDIDPVDEIIYWVDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKV 1511 (1576)
Q Consensus 1434 ald~D~~~~~vYWsD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I 1511 (1576)
...|.+...+|+|+.. +...|+++.+++...... .+. .........++-+.++.|+++.... ....|
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~------~lt-~~~~~~~~p~wSPDG~~Laf~~~~~----g~~~I 353 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR------LLT-KKYRNSSCPAWSPDGKKIAFCSVIK----GVRQI 353 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceE------Eec-cCCCCccceeECCCCCEEEEEEcCC----CCcEE
Confidence 3466777777776543 233577666543211100 000 1112334556777778898885431 13679
Q ss_pred EEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEec-CCCCcEEEeecCCCCcEEEEec
Q psy948 1512 MVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAET-GASPRIESAWMDGSHRSATQIS 1571 (1576)
Q Consensus 1512 ~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~-g~~~~Iera~mDGs~r~~i~~~ 1571 (1576)
.+.++++...+.|... .....+.+..|...+|+++-. +....|...+++|...+.|...
T Consensus 354 ~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 354 CVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred EEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 9999988876666533 334567788888777877643 3446899999999887777643
No 104
>KOG4289|consensus
Probab=87.27 E-value=26 Score=47.94 Aligned_cols=31 Identities=35% Similarity=1.042 Sum_probs=27.8
Q ss_pred CccccccCCCcccc--cceeCCCeeeeecCCCcccC
Q psy948 1077 VDECAKVETNQCGH--KCVDTLTGYYCECNTGYNDD 1110 (1576)
Q Consensus 1077 idEC~~~~~~~Csq--~C~Nt~Gsy~C~C~~Gy~l~ 1110 (1576)
||+|-. ++|+. .|...+|+|+|.|.+||.++
T Consensus 1239 iDlCYs---~pC~nng~C~srEggYtCeCrpg~tGe 1271 (2531)
T KOG4289|consen 1239 IDLCYS---GPCGNNGRCRSREGGYTCECRPGFTGE 1271 (2531)
T ss_pred hHhhhc---CCCCCCCceEEecCceeEEecCCcccc
Confidence 899974 88876 89999999999999999986
No 105
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.91 E-value=7.1 Score=45.12 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=80.4
Q ss_pred cccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCC
Q psy948 1429 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPK 1508 (1576)
Q Consensus 1429 ~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~ 1508 (1576)
..++.+|.|++.+.+||-+-.....|......| .++. .+-+.++..|++|+ |+.+|.|..-.+| .
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----dlir----tiPL~g~~DpE~Ie--yig~n~fvi~dER-----~ 149 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----DLIR----TIPLTGFSDPETIE--YIGGNQFVIVDER-----D 149 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCC----ceEE----EecccccCChhHeE--EecCCEEEEEehh-----c
Confidence 346889999999999998776777777665543 2221 22345678888887 4899999987665 4
Q ss_pred CeEEEEEcCCCceEEEee-------CCC---CCceEEEEecCCCeEEEEecCCCCcEEEeecCC
Q psy948 1509 GKVMVAHNDGRYRRSLVS-------ENL---ESPSSIALDPTLGKMFWAETGASPRIESAWMDG 1562 (1576)
Q Consensus 1509 ~~I~v~~ldG~~~~~lv~-------~~l---~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDG 1562 (1576)
.++.+.+++-......+. ... ..=-|||-||..+.||.+....+-+|....++=
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 678777776542221111 111 112389999999999999877666777766443
No 106
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.22 E-value=57 Score=37.81 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=47.1
Q ss_pred CcceEEEeccCCeEEEEcCCC--CeEEEEeCCCCceEEEEeCCCccceeEEeeeCCeEEEeccCCCcceeeccccc
Q psy948 1242 WPNALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNA 1315 (1576)
Q Consensus 1242 ~P~gLaiD~~~~rlYw~D~~~--~~I~s~~~dG~~r~~v~~~~~~~~P~~lavfed~lYwtd~~~~~i~~~~k~~~ 1315 (1576)
.-.||.++ ..+.||-..... ..|..+++..........-..--.--||++.++.||-..|..+..+..++.+-
T Consensus 46 FTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 46 FTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTT
T ss_pred cCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccc
Confidence 34566664 456788777755 46777777754432222111122335899999999999999999888777543
No 107
>KOG1219|consensus
Probab=85.03 E-value=2.8 Score=58.84 Aligned_cols=57 Identities=25% Similarity=0.712 Sum_probs=45.9
Q ss_pred cccccCCCcceeeccCCceeccCCCcccc-CCCCccCCCCccccccccCCCceEEEcCCCcEec
Q psy948 1326 CMNITGGSGYLCTCYQGFIIDKNNAKKCL-DVDECATGIHHCSQVCTNLNGTYACSCNAGFTLS 1388 (1576)
Q Consensus 1326 c~n~~g~~~~~C~C~~G~~~~~~~~~~c~-d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~ 1388 (1576)
|..+++ .||.|.||.-|. ++.|+ ++++|..++..=...|...+++|.|.||.||++.
T Consensus 3878 C~~~~~-ggy~CkCpsqys-----G~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~ 3935 (4289)
T KOG1219|consen 3878 CISQPK-GGYKCKCPSQYS-----GNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGK 3935 (4289)
T ss_pred ecCCCC-CceEEeCccccc-----CcccccccccccCCCCCCCCEEEecCCCeeEeCCCCccCc
Confidence 444444 489999999996 45664 6788887777777899999999999999999984
No 108
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.33 E-value=30 Score=42.20 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=62.9
Q ss_pred ccceeeec--ccCCcEEE-EeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCC
Q psy948 1430 RRIEALDI--DPVDEIIY-WVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSK 1506 (1576)
Q Consensus 1430 ~~i~ald~--D~~~~~vY-WsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~ 1506 (1576)
..+.++.. ++.++.+| ++....+.+....|.....+.+.......+ ..-..++|++||-.++.||..+.+
T Consensus 156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f--~~~sQ~EGCVVDDe~g~LYvgEE~----- 228 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREF--KVGSQPEGCVVDDETGRLYVGEED----- 228 (381)
T ss_dssp SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEE--E-SS-EEEEEEETTTTEEEEEETT-----
T ss_pred ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEe--cCCCcceEEEEecccCCEEEecCc-----
Confidence 34555554 45667777 344455666555554333333322111222 223589999999999999999975
Q ss_pred CCCeEEEEEcC--CCceEEEee----CCC-CCceEEEEec---CCCeEEEEecCCC
Q psy948 1507 PKGKVMVAHND--GRYRRSLVS----ENL-ESPSSIALDP---TLGKMFWAETGAS 1552 (1576)
Q Consensus 1507 ~~~~I~v~~ld--G~~~~~lv~----~~l-~~P~~IavDp---~~G~LYWTD~g~~ 1552 (1576)
.-|.+...+ +....++|. ..| ...-+|+|-. .+|||.-++.|.+
T Consensus 229 --~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~ 282 (381)
T PF02333_consen 229 --VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN 282 (381)
T ss_dssp --TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred --cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence 458888765 333333442 123 4566888854 4689999998754
No 109
>PRK01742 tolB translocation protein TolB; Provisional
Probab=84.23 E-value=27 Score=43.87 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=77.5
Q ss_pred ccceeeecccCCcEEEEeecc--cceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCC
Q psy948 1430 RRIEALDIDPVDEIIYWVDSY--DRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKP 1507 (1576)
Q Consensus 1430 ~~i~ald~D~~~~~vYWsD~~--~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~ 1507 (1576)
..+..+.+.+..++|+|+... ...|+..++.+.....+.. + .+....+++.+.++.|+++-... .
T Consensus 204 ~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-------~--~g~~~~~~wSPDG~~La~~~~~~----g 270 (429)
T PRK01742 204 QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-------F--RGHNGAPAFSPDGSRLAFASSKD----G 270 (429)
T ss_pred CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-------C--CCccCceeECCCCCEEEEEEecC----C
Confidence 346778888888888876432 3467776665432222210 1 11233567777778898874321 1
Q ss_pred CCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEe-cCCCCcEEEeecCCCCcEEE
Q psy948 1508 KGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAE-TGASPRIESAWMDGSHRSAT 1568 (1576)
Q Consensus 1508 ~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD-~g~~~~Iera~mDGs~r~~i 1568 (1576)
.-.|.+.++++...+.|.. ......+.+..|...+|+++- ....++|++.+++|...+.+
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred cEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 2357888888776555543 333456788899877777764 34467999998888765544
No 110
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=84.01 E-value=5.3 Score=48.19 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=45.9
Q ss_pred CcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEE-eeCCC-------C------CceEEEEecCCCeEEEE
Q psy948 1482 KLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSL-VSENL-------E------SPSSIALDPTLGKMFWA 1547 (1576)
Q Consensus 1482 ~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~l-v~~~l-------~------~P~~IavDp~~G~LYWT 1547 (1576)
-++|||+ .-.+.+||++.+.........|.+..++|+..+.+ +-..+ . ..-|||+.|...+||-.
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 6789999 57889999987621111128999999999986666 32222 1 22389999987767766
Q ss_pred ec
Q psy948 1548 ET 1549 (1576)
Q Consensus 1548 D~ 1549 (1576)
-.
T Consensus 165 ~E 166 (326)
T PF13449_consen 165 ME 166 (326)
T ss_pred EC
Confidence 53
No 111
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=83.81 E-value=0.72 Score=35.10 Aligned_cols=21 Identities=38% Similarity=0.977 Sum_probs=17.8
Q ss_pred cccccCC-CceEEEcCCCcEec
Q psy948 1368 QVCTNLN-GTYACSCNAGFTLS 1388 (1576)
Q Consensus 1368 ~lC~n~~-gsy~C~Cp~G~~l~ 1388 (1576)
..|+... ++|+|.|++||++.
T Consensus 10 g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 10 GTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp EEEEEESTSEEEEEEBTTEEST
T ss_pred eEEEeCCCCCEEeECCCCCccC
Confidence 3788777 99999999999863
No 112
>KOG4649|consensus
Probab=82.35 E-value=98 Score=35.37 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=52.6
Q ss_pred eeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEE
Q psy948 1434 ALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMV 1513 (1576)
Q Consensus 1434 ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v 1513 (1576)
-+.|++ .++..|--.+.+.|+.-.-. +... -+++.+.+-+ -=+|.=++.+.|-|.+. .++.-.
T Consensus 201 l~~f~~-sG~qvwr~~t~GpIf~~Pc~-s~Ps------~q~i~~~~~~--Cf~~~~p~~ghL~w~~~-------~g~t~~ 263 (354)
T KOG4649|consen 201 LTSFDE-SGRQVWRPATKGPIFMEPCE-SRPS------CQQISLENEN--CFCAPLPIAGHLLWATQ-------SGTTLH 263 (354)
T ss_pred EEEEcC-CCcEEEeecCCCceeccccc-CCCc------ceEEEEecCC--eEEEeccccceEEEEec-------CCcEEE
Confidence 445664 44777755566666532111 1110 0222222211 22455667799999976 345555
Q ss_pred EEcCCCceEEEeeCCCCCceEEEEecCCCeEEEE
Q psy948 1514 AHNDGRYRRSLVSENLESPSSIALDPTLGKMFWA 1547 (1576)
Q Consensus 1514 ~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWT 1547 (1576)
+.++-+.|-.+-..+...|+-+++-...|++...
T Consensus 264 vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il 297 (354)
T KOG4649|consen 264 VYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMIL 297 (354)
T ss_pred EEeCcccceeccCCCCcchhhhhhhcCCCcEEEE
Confidence 6666555545555555667777777777776655
No 113
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=81.88 E-value=46 Score=40.91 Aligned_cols=153 Identities=10% Similarity=0.064 Sum_probs=77.7
Q ss_pred CCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeee
Q psy948 1409 GPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAV 1488 (1576)
Q Consensus 1409 ~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAV 1488 (1576)
...|..+.+........+.....+.++++.+....||-++...+.+.-.+.........+...+.... ..-..+.+|..
T Consensus 57 dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~-~~~~Rv~aIv~ 135 (369)
T PF02239_consen 57 DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD-GPESRVAAIVA 135 (369)
T ss_dssp TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT-TS---EEEEEE
T ss_pred CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc-ccCCCceeEEe
Confidence 33455555544433333333456788888888889999888888776443322211111110000000 00112345555
Q ss_pred cCCCCeEEEeecCCCCCCCCCeEEEEEcCCC-ceE-EEeeCCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCCCCcE
Q psy948 1489 DWIAHNIYWTVSDRSGSKPKGKVMVAHNDGR-YRR-SLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRS 1566 (1576)
Q Consensus 1489 Dwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~-~~~-~lv~~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r~ 1566 (1576)
.+.....+++-.+ .++|.+.++... ... +.+ ..-..|..+.+||...|+|-+..+++ +|...++......
T Consensus 136 s~~~~~fVv~lkd------~~~I~vVdy~d~~~~~~~~i-~~g~~~~D~~~dpdgry~~va~~~sn-~i~viD~~~~k~v 207 (369)
T PF02239_consen 136 SPGRPEFVVNLKD------TGEIWVVDYSDPKNLKVTTI-KVGRFPHDGGFDPDGRYFLVAANGSN-KIAVIDTKTGKLV 207 (369)
T ss_dssp -SSSSEEEEEETT------TTEEEEEETTTSSCEEEEEE-E--TTEEEEEE-TTSSEEEEEEGGGT-EEEEEETTTTEEE
T ss_pred cCCCCEEEEEEcc------CCeEEEEEeccccccceeee-cccccccccccCcccceeeecccccc-eeEEEeeccceEE
Confidence 4444333333332 578999986543 222 222 34467999999998888877766654 7877777765555
Q ss_pred EEEe
Q psy948 1567 ATQI 1570 (1576)
Q Consensus 1567 ~i~~ 1570 (1576)
+++.
T Consensus 208 ~~i~ 211 (369)
T PF02239_consen 208 ALID 211 (369)
T ss_dssp EEEE
T ss_pred EEee
Confidence 4443
No 114
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=81.67 E-value=34 Score=38.64 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=46.5
Q ss_pred eccCCcceeee--cCCCCeEEEeecCCCCCCCCCeEEEE----EcCCCceEEEeeC--CCCCceEEEEecCCCeEEEEec
Q psy948 1478 KSIGKLTAIAV--DWIAHNIYWTVSDRSGSKPKGKVMVA----HNDGRYRRSLVSE--NLESPSSIALDPTLGKMFWAET 1549 (1576)
Q Consensus 1478 ~~~~~p~glAV--Dwv~~nLYWTD~~~~~~~~~~~I~v~----~ldG~~~~~lv~~--~l~~P~~IavDp~~G~LYWTD~ 1549 (1576)
+++..|.|||+ +..++-.|.--..+ .+.|... .-+|+.+..+|.. --.|--++++|-+.|+||..+.
T Consensus 150 s~~s~~YGl~lyrs~ktgd~yvfV~~~-----qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE 224 (364)
T COG4247 150 SSSSSAYGLALYRSPKTGDYYVFVNRR-----QGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE 224 (364)
T ss_pred cCcccceeeEEEecCCcCcEEEEEecC-----CCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec
Confidence 45678899988 44445455443332 2334433 3466666666641 2235579999999999999984
Q ss_pred CCCCcEEEeecC
Q psy948 1550 GASPRIESAWMD 1561 (1576)
Q Consensus 1550 g~~~~Iera~mD 1561 (1576)
.. .||+..-+
T Consensus 225 dv--aiWK~~Ae 234 (364)
T COG4247 225 DV--AIWKYEAE 234 (364)
T ss_pred cc--eeeecccC
Confidence 32 36665443
No 115
>PRK02888 nitrous-oxide reductase; Validated
Probab=79.89 E-value=1.6e+02 Score=38.25 Aligned_cols=76 Identities=14% Similarity=0.002 Sum_probs=55.4
Q ss_pred ccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCC---------CceEEEeeC--CCCCceEEEEecCCCeEEEE
Q psy948 1479 SIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDG---------RYRRSLVSE--NLESPSSIALDPTLGKMFWA 1547 (1576)
Q Consensus 1479 ~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG---------~~~~~lv~~--~l~~P~~IavDp~~G~LYWT 1547 (1576)
--.+|.||+|.+..+.||-+..- .++|.|.++.. ..+.+|+.+ --..|.-.++|+. |+.|-|
T Consensus 319 VGKsPHGV~vSPDGkylyVankl------S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~ayts 391 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKL------SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTT 391 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCC------CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEe
Confidence 34689999999999999999753 57788877644 234555542 2356999999986 888877
Q ss_pred ecCCCCcEEEeecCC
Q psy948 1548 ETGASPRIESAWMDG 1562 (1576)
Q Consensus 1548 D~g~~~~Iera~mDG 1562 (1576)
-.-.+ +|-+.+++-
T Consensus 392 lf~ds-qv~kwn~~~ 405 (635)
T PRK02888 392 LFLDS-QIVKWNIEA 405 (635)
T ss_pred Eeecc-eeEEEehHH
Confidence 76544 688887764
No 116
>KOG4289|consensus
Probab=78.90 E-value=1.3 Score=59.10 Aligned_cols=50 Identities=36% Similarity=0.800 Sum_probs=39.1
Q ss_pred cceeeccCCceeccCCCcccc-CCCCccCCCCccccccccCCCceEEEcCCCcEec
Q psy948 1334 GYLCTCYQGFIIDKNNAKKCL-DVDECATGIHHCSQVCTNLNGTYACSCNAGFTLS 1388 (1576)
Q Consensus 1334 ~~~C~C~~G~~~~~~~~~~c~-d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~ 1388 (1576)
+++|.||+||..+ .|. .+++|-.++.+=...|....|+|+|.|.+||++.
T Consensus 1221 glrCrCPpGFTgd-----~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGe 1271 (2531)
T KOG4289|consen 1221 GLRCRCPPGFTGD-----YCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGE 1271 (2531)
T ss_pred ceeEeCCCCCCcc-----cccchhHhhhcCCCCCCCceEEecCceeEEecCCcccc
Confidence 5999999999854 453 4788875333335689999999999999999984
No 117
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=76.59 E-value=24 Score=43.32 Aligned_cols=136 Identities=14% Similarity=0.118 Sum_probs=87.6
Q ss_pred EEEEeccCCceEecccccCCcceEEEeCCcceEEEecCCC---cC----------------eEE-------EEecCCCCc
Q psy948 1177 LDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL---QA----------------YIG-------KIGMDGSNF 1230 (1576)
Q Consensus 1177 I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~lywtd~g~---~~----------------~I~-------ra~mdGs~~ 1230 (1576)
|...+.++....+...++.+|.+++.+|..|.||-++-|. .+ -+. ++.+++...
T Consensus 221 ~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~ 300 (399)
T COG2133 221 IIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVV 300 (399)
T ss_pred ccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCccc
Confidence 3444556666666678899999999999999999998877 11 111 223343333
Q ss_pred EEEEecc---CCCCCcceEEEeccC------CeEEEEcCCCCeEEEEeCCCCceEEEE---eCCCccceeEEeee-CCeE
Q psy948 1231 TRILTHE---DDIAWPNALTLDYFT------ERLYWADAHLDYIASVDLDGKHKHIVI---SGQKVPHVFALTLF-EDHI 1297 (1576)
Q Consensus 1231 ~~iv~~~---~~l~~P~gLaiD~~~------~rlYw~D~~~~~I~s~~~dG~~r~~v~---~~~~~~~P~~lavf-ed~l 1297 (1576)
..++... .....|.||++-.-+ +.||++.....-+.+++.+|..+.++. .......|.+|++. .+.|
T Consensus 301 ~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGal 380 (399)
T COG2133 301 AGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGAL 380 (399)
T ss_pred ccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeE
Confidence 2222110 111245677775322 678888888887888999998544432 32223688998885 5578
Q ss_pred EEeccC-CCcceeecc
Q psy948 1298 YWTDWN-TKSINRADK 1312 (1576)
Q Consensus 1298 Ywtd~~-~~~i~~~~k 1312 (1576)
|.++-. +..|.|+..
T Consensus 381 lv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 381 LVLTDQGDGRILRVSY 396 (399)
T ss_pred EEeecCCCCeEEEecC
Confidence 888766 668888764
No 118
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=75.33 E-value=8.2 Score=36.77 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=28.0
Q ss_pred CCCCCcceEEEeccCCeEEEEcCCCCeEEEEe
Q psy948 1238 DDIAWPNALTLDYFTERLYWADAHLDYIASVD 1269 (1576)
Q Consensus 1238 ~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~ 1269 (1576)
+.+..||||+++...+.||+++.....|....
T Consensus 51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred ccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 47899999999999999999998888777644
No 119
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=73.72 E-value=6.4 Score=37.49 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=34.7
Q ss_pred ecCCCCcEEEEecCCCcccceeEEeecCCCcEEEeeCCCCcEEEE
Q psy948 39 GMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV 83 (1576)
Q Consensus 39 ~mdG~~~~~ii~~~~~~~~p~~l~id~~~~~lyw~D~~~~~I~~~ 83 (1576)
.-||+..++++ +++..||||++|...+.||=++.....|...
T Consensus 40 yyd~~~~~~va---~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy 81 (86)
T PF01731_consen 40 YYDGKEVKVVA---SGFSFANGIAISPDKKYLYVASSLAHSIHVY 81 (86)
T ss_pred EEeCCEeEEee---ccCCCCceEEEcCCCCEEEEEeccCCeEEEE
Confidence 45888765554 6899999999999999999999888887654
No 120
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=73.35 E-value=1.8e+02 Score=33.65 Aligned_cols=120 Identities=16% Similarity=0.232 Sum_probs=63.8
Q ss_pred ccccCCcceEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEEEe-ccCCCCCcceEEEeccCCeEEEEcCCCCeEEEEe
Q psy948 1191 KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT-HEDDIAWPNALTLDYFTERLYWADAHLDYIASVD 1269 (1576)
Q Consensus 1191 ~~~l~~P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~-~~~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~ 1269 (1576)
+..-..|++|++.|..+ .+.+|.+. .|.|.+-.--..++.-. .+..-..-+-+.+|. .++|+++.. .....+.+
T Consensus 100 Lg~Ga~Phgiv~gpdg~-~Witd~~~--aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q-~G~yGrLd 174 (353)
T COG4257 100 LGSGASPHGIVVGPDGS-AWITDTGL--AIGRLDPKTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQ-IGAYGRLD 174 (353)
T ss_pred cCCCCCCceEEECCCCC-eeEecCcc--eeEEecCcccceEEeecccccCCCcccceeeCC-CccEEEeec-cccceecC
Confidence 34456899999998654 56677664 56665331111111111 000111122234443 345555443 22222212
Q ss_pred CCCCceEEEEeCCCccceeEEeee-CCeEEEeccCCCcceeecccccc
Q psy948 1270 LDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNAR 1316 (1576)
Q Consensus 1270 ~dG~~r~~v~~~~~~~~P~~lavf-ed~lYwtd~~~~~i~~~~k~~~~ 1316 (1576)
.-....+ ++...+-..|++|.+. .+.||++....+.|.+++.+.+.
T Consensus 175 Pa~~~i~-vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 175 PARNVIS-VFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred cccCcee-eeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCC
Confidence 1111222 2333456678999875 67899999999999999988773
No 121
>KOG0273|consensus
Probab=71.19 E-value=56 Score=40.08 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=67.7
Q ss_pred CceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeec
Q psy948 1410 PEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVD 1489 (1576)
Q Consensus 1410 ~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVD 1489 (1576)
..+|..+.++..+..+-.+...|.+|-+.-+..+|.=.++...+|..-.+.| ++. ....+.+..+|-||
T Consensus 257 G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g----~~~-------q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 257 GEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG----TVK-------QQFEFHSAPALDVD 325 (524)
T ss_pred cEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc----eEE-------EeeeeccCCccceE
Confidence 3445555555544444334445666666555554443333333333221111 111 11223455589999
Q ss_pred CCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeE
Q psy948 1490 WIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKM 1544 (1576)
Q Consensus 1490 wv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~L 1544 (1576)
|++..-|-+-.. .+.|.|..++++....-+...-....+|-.+|+..+|
T Consensus 326 W~~~~~F~ts~t------d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 326 WQSNDEFATSST------DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred EecCceEeecCC------CceEEEEEecCCCcceeeecccCceEEEEECCCCceE
Confidence 999999988653 5789999999986655444555566788888764444
No 122
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=70.98 E-value=17 Score=43.96 Aligned_cols=87 Identities=23% Similarity=0.327 Sum_probs=55.2
Q ss_pred cCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCC----ceEEEe-----eCCCC--------CceEEEEecCCC
Q psy948 1480 IGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGR----YRRSLV-----SENLE--------SPSSIALDPTLG 1542 (1576)
Q Consensus 1480 ~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~----~~~~lv-----~~~l~--------~P~~IavDp~~G 1542 (1576)
++...||++|. ....||+-+++.......++...+++.. ....+. ...-. .|-||++ +..|
T Consensus 19 ~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g 96 (326)
T PF13449_consen 19 FGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDG 96 (326)
T ss_pred cCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCC
Confidence 45678899986 5667888665432122334555555441 111111 11111 4459999 8899
Q ss_pred eEEEEecCC-----CCcEEEeecCCCCcEEE
Q psy948 1543 KMFWAETGA-----SPRIESAWMDGSHRSAT 1568 (1576)
Q Consensus 1543 ~LYWTD~g~-----~~~Iera~mDGs~r~~i 1568 (1576)
.+||++-+. .|+|.+.+++|.....+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~ 127 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLDGRVIRRF 127 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCCCcccceE
Confidence 999999875 37999999999986666
No 123
>KOG2106|consensus
Probab=68.96 E-value=78 Score=39.17 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=84.1
Q ss_pred eEEecCCCeEEEEeccCCceEecccccCCcceEEEeCCcceEEEecCCCcCeEEEEecCCCCc---EEEEe--ccCCCCC
Q psy948 1168 CALDVRSIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF---TRILT--HEDDIAW 1242 (1576)
Q Consensus 1168 ~avD~~~~~I~v~~ldG~~r~~l~~~l~~P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~---~~iv~--~~~~l~~ 1242 (1576)
+.|-..++.|-..++.+....++......--++|++|....+.=+.--....|.+ .++ ..++. ..-.-..
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-----~~k~~wt~~~~d~~~~~~fh 416 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-----DHKLEWTKIIEDPAECADFH 416 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-----CCceeEEEEecCceeEeecc
Confidence 3344444555555555544443333334667888888765332111001111111 000 00110 0011235
Q ss_pred cce-EEEeccCCeEEEEcCCCCeEEEEeCCCCceEEEEeCCCccceeEEeeeCC--eEEEeccCCCcceeecccccccc
Q psy948 1243 PNA-LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFED--HIYWTDWNTKSINRADKFNAREI 1318 (1576)
Q Consensus 1243 P~g-LaiD~~~~rlYw~D~~~~~I~s~~~dG~~r~~v~~~~~~~~P~~lavfed--~lYwtd~~~~~i~~~~k~~~~~~ 1318 (1576)
|.| ||+-..++|.+..|.....+-.+..++....++.- ......++++-..+ |||-.+...+.+.++.|..+..+
T Consensus 417 psg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~y-sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~i 494 (626)
T KOG2106|consen 417 PSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRY-SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPI 494 (626)
T ss_pred CcceEEEeeccceEEEEecccceeEEEEecCCceEEEEE-cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCcee
Confidence 666 77888999999999999888888888665555542 33455688888888 45667777888889999888443
No 124
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=65.66 E-value=1.5e+02 Score=33.10 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=53.5
Q ss_pred ccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCC
Q psy948 1430 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKG 1509 (1576)
Q Consensus 1430 ~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~ 1509 (1576)
..+.++.|.+....|+-.. ..+.|+..++.......... .....+..|++...++.|+.+.. .+
T Consensus 136 ~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~-------~~ 199 (289)
T cd00200 136 DWVNSVAFSPDGTFVASSS-QDGTIKLWDLRTGKCVATLT--------GHTGEVNSVAFSPDGEKLLSSSS-------DG 199 (289)
T ss_pred CcEEEEEEcCcCCEEEEEc-CCCcEEEEEccccccceeEe--------cCccccceEEECCCcCEEEEecC-------CC
Confidence 3567788877654444332 34555544443221111110 11235677888766656666543 36
Q ss_pred eEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEE
Q psy948 1510 KVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWA 1547 (1576)
Q Consensus 1510 ~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWT 1547 (1576)
.|.+.++........+......+.+|+++|. +.++.+
T Consensus 200 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 236 (289)
T cd00200 200 TIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLAS 236 (289)
T ss_pred cEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEE
Confidence 7888887643332223233346678888887 444444
No 125
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=65.07 E-value=6.5 Score=30.12 Aligned_cols=27 Identities=26% Similarity=0.684 Sum_probs=18.6
Q ss_pred CccccccccCCCceEEEcCCCcEecCCC
Q psy948 1364 HHCSQVCTNLNGTYACSCNAGFTLSDGL 1391 (1576)
Q Consensus 1364 ~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~ 1391 (1576)
..|.+.|.+.. .+.|.||.||.|..+.
T Consensus 6 t~CpA~CDpn~-~~~C~CPeGyIlde~~ 32 (34)
T PF09064_consen 6 TECPADCDPNS-PGQCFCPEGYILDEGS 32 (34)
T ss_pred ccCCCccCCCC-CCceeCCCceEecCCc
Confidence 34566676433 2489999999997653
No 126
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=65.02 E-value=3.4e+02 Score=33.42 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=56.9
Q ss_pred EecCCCeEEEEeccCCceEec--ccccCC-cceEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEEEeccCCCCCcceE
Q psy948 1170 LDVRSIKLDVAELDGTNRKTL--KTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNAL 1246 (1576)
Q Consensus 1170 vD~~~~~I~v~~ldG~~r~~l--~~~l~~-P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gL 1246 (1576)
+....+.+.|.+ +...+++ +..... +.++++.|...++|.+.. ...|...+|.-......+ ..-..|.|+
T Consensus 11 ~~~~~~~v~viD--~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~vsviD~~~~~~v~~i---~~G~~~~~i 83 (369)
T PF02239_consen 11 VERGSGSVAVID--GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTVSVIDLATGKVVATI---KVGGNPRGI 83 (369)
T ss_dssp EEGGGTEEEEEE--TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEEEEEETTSSSEEEEE---E-SSEEEEE
T ss_pred EecCCCEEEEEE--CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeEEEEECCcccEEEEE---ecCCCcceE
Confidence 344456655554 4333333 222333 445677787888998863 456777766443322222 235679999
Q ss_pred EEeccCCeEEEEcCCCCeEEEEeCCCCc
Q psy948 1247 TLDYFTERLYWADAHLDYIASVDLDGKH 1274 (1576)
Q Consensus 1247 aiD~~~~rlYw~D~~~~~I~s~~~dG~~ 1274 (1576)
++....+.||.+....+.+..++.....
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLE 111 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred EEcCCCCEEEEEecCCCceeEecccccc
Confidence 9999999999999888888887765443
No 127
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=62.24 E-value=60 Score=41.81 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=40.6
Q ss_pred ccccceeeecccCCcEEEEeecccc-------------------eeEEEeecccccc-------eeeeccc---------
Q psy948 1428 DERRIEALDIDPVDEIIYWVDSYDR-------------------NIRRSFMLEAQKG-------QVQAGFG--------- 1472 (1576)
Q Consensus 1428 ~~~~i~ald~D~~~~~vYWsD~~~~-------------------~I~r~~l~~~~~~-------~v~~~~~--------- 1472 (1576)
...++..|.+++.+++||++-.+.. .|+|....+.... .++....
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 3467888899999999998744333 6777665543110 0111000
Q ss_pred ceeeeeccCCcceeeecCCCCeEEEe
Q psy948 1473 QDLGIKSIGKLTAIAVDWIAHNIYWT 1498 (1576)
Q Consensus 1473 ~~~~~~~~~~p~glAVDwv~~nLYWT 1498 (1576)
.......+..|.+|+||.. ++|+..
T Consensus 428 ~~~~~~~f~sPDNL~~d~~-G~LwI~ 452 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPD-GNLWIQ 452 (524)
T ss_pred CcccCCCcCCCCceEECCC-CCEEEE
Confidence 0011234779999999985 455444
No 128
>KOG1217|consensus
Probab=61.34 E-value=6.8 Score=49.48 Aligned_cols=61 Identities=39% Similarity=0.909 Sum_probs=48.6
Q ss_pred cccccccCCCcceeeccCCceeccCCCccccCCCCccCCCCccc--cccccCCCceEEEcCCCcEecC
Q psy948 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCS--QVCTNLNGTYACSCNAGFTLSD 1389 (1576)
Q Consensus 1324 ~~c~n~~g~~~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs--~lC~n~~gsy~C~Cp~G~~l~d 1389 (1576)
..|.++.++ |.|.|+.||.+.. ...+.++++|..... |. +.|++.+++|.|.|++||++..
T Consensus 243 ~~c~~~~~~--~~C~~~~g~~~~~--~~~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~C~~g~~g~~ 305 (487)
T KOG1217|consen 243 GTCVNTVGS--YTCRCPEGYTGDA--CVTCVDVDSCALIAS-CPNGGTCVNVPGSYRCTCPPGFTGRL 305 (487)
T ss_pred CcccccCCc--eeeeCCCCccccc--cceeeeccccCCCCc-cCCCCeeecCCCcceeeCCCCCCCCC
Confidence 356677766 9999999998753 146788999987654 64 5999999999999999999864
No 129
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.35 E-value=2.8e+02 Score=30.97 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=38.1
Q ss_pred ceEEEeccCCeEEEEcC--CCCeEEEEeCCCCceEEEEeCCCcc--cee--EEeeeCCeEEEeccCCCcceeecccc
Q psy948 1244 NALTLDYFTERLYWADA--HLDYIASVDLDGKHKHIVISGQKVP--HVF--ALTLFEDHIYWTDWNTKSINRADKFN 1314 (1576)
Q Consensus 1244 ~gLaiD~~~~rlYw~D~--~~~~I~s~~~dG~~r~~v~~~~~~~--~P~--~lavfed~lYwtd~~~~~i~~~~k~~ 1314 (1576)
.||.++ ++.||-.-. +...|...++.+.... .+ ..+. ..| ||+..++++|-..|..+.-+..++.+
T Consensus 49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~--~s-~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEI--FS-EKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT 120 (262)
T ss_pred cceeee--CCEEEEeccccccceeEEEeccCceEE--EE-eecCCccccccceeeccceEEEEEeccceeEEEChHH
Confidence 344433 335554444 3456777777643221 11 1122 233 68889999999999988777666543
No 130
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=59.67 E-value=45 Score=39.09 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=71.7
Q ss_pred ccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCC-------CCCCCCe
Q psy948 1438 DPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRS-------GSKPKGK 1510 (1576)
Q Consensus 1438 D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~-------~~~~~~~ 1510 (1576)
......||-+|...++|... +++-....+.+.-.+-.+..--.|.+|.. +.++||.|-..+. +....+.
T Consensus 148 ~~~~~~LYaadF~~g~IDVF--d~~f~~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~ 223 (336)
T TIGR03118 148 TGGGDYLYAANFRQGRIDVF--KGSFRPPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGY 223 (336)
T ss_pred cCCCceEEEeccCCCceEEe--cCccccccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcce
Confidence 34467899999888888532 22221111000001111122235666654 6899999954332 1123578
Q ss_pred EEEEEcCCCceEEEee-CCCCCceEEEEecC-----CCeEEEEecCCCCcEEEeecC
Q psy948 1511 VMVAHNDGRYRRSLVS-ENLESPSSIALDPT-----LGKMFWAETGASPRIESAWMD 1561 (1576)
Q Consensus 1511 I~v~~ldG~~~~~lv~-~~l~~P~~IavDp~-----~G~LYWTD~g~~~~Iera~mD 1561 (1576)
|.|.+++|+..+.+.+ ..|..|-+||+-|. .|.|-.-..|. .+|---+..
T Consensus 224 VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGD-G~InaFD~~ 279 (336)
T TIGR03118 224 VNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGD-GTINAYDPQ 279 (336)
T ss_pred EEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCC-ceeEEecCC
Confidence 9999999998877765 57999999999875 45666666663 366665543
No 131
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=54.06 E-value=2.2e+02 Score=33.71 Aligned_cols=133 Identities=10% Similarity=0.023 Sum_probs=74.8
Q ss_pred eeEE-ecCCCeEEEEecc-----CCceEec--cc------ccCCcceEEEeCCcce-------------EEEecCCCcCe
Q psy948 1167 LCAL-DVRSIKLDVAELD-----GTNRKTL--KT------AIQDPRGITLHPGIGY-------------VYFSSWNLQAY 1219 (1576)
Q Consensus 1167 ~~av-D~~~~~I~v~~ld-----G~~r~~l--~~------~l~~P~~iavdP~~g~-------------lywtd~g~~~~ 1219 (1576)
.+|| |..++...+++.+ |.....+ +. .-..|.+|+.+...++ ||-|+-|.-.
T Consensus 35 ~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTis- 113 (336)
T TIGR03118 35 PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLS- 113 (336)
T ss_pred CEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEE-
Confidence 3554 5667777777776 4332222 11 2346999999866554 4444433110
Q ss_pred EEEEecCCC---CcEEEEeccCCCCCcceEEEecc--CCeEEEEcCCCCeEEEEeCCCCceEEEEeC-------CCccce
Q psy948 1220 IGKIGMDGS---NFTRILTHEDDIAWPNALTLDYF--TERLYWADAHLDYIASVDLDGKHKHIVISG-------QKVPHV 1287 (1576)
Q Consensus 1220 I~ra~mdGs---~~~~iv~~~~~l~~P~gLaiD~~--~~rlYw~D~~~~~I~s~~~dG~~r~~v~~~-------~~~~~P 1287 (1576)
-++-.++=+ +...++.......-=.||||-.. ..+||-+|-+..+|++. |++-+++.+.+ ..-..|
T Consensus 114 aW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF--d~~f~~~~~~g~F~DP~iPagyAP 191 (336)
T TIGR03118 114 GWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF--KGSFRPPPLPGSFIDPALPAGYAP 191 (336)
T ss_pred eecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe--cCccccccCCCCccCCCCCCCCCC
Confidence 000001111 11112221222344568888754 68999999999999986 55555443321 123458
Q ss_pred eEEeeeCCeEEEecc
Q psy948 1288 FALTLFEDHIYWTDW 1302 (1576)
Q Consensus 1288 ~~lavfed~lYwtd~ 1302 (1576)
|.|...+++||.|=.
T Consensus 192 FnIqnig~~lyVtYA 206 (336)
T TIGR03118 192 FNVQNLGGTLYVTYA 206 (336)
T ss_pred cceEEECCeEEEEEE
Confidence 999999999999843
No 132
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=53.06 E-value=3.2e+02 Score=31.79 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=28.5
Q ss_pred ccceeEEeeeCC-eEEEeccCCCcceeeccccccccc
Q psy948 1284 VPHVFALTLFED-HIYWTDWNTKSINRADKFNAREIQ 1319 (1576)
Q Consensus 1284 ~~~P~~lavfed-~lYwtd~~~~~i~~~~k~~~~~~~ 1319 (1576)
-..||.++..-+ .|++++..++.|-+.+..+|+...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ 97 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET 97 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEE
Confidence 446888888655 599999999999999988876544
No 133
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=52.97 E-value=2.2e+02 Score=34.62 Aligned_cols=77 Identities=18% Similarity=0.313 Sum_probs=53.5
Q ss_pred CCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEecCC---CCcEEEeecC-CCCc
Q psy948 1490 WIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGA---SPRIESAWMD-GSHR 1565 (1576)
Q Consensus 1490 wv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g~---~~~Iera~mD-Gs~r 1565 (1576)
.-...++|.-. +.+ -..|.+.+++|...+.|......--.-+++|+.++.||++-.+. ...|.|.+++ |...
T Consensus 245 ~~~~~~l~~s~-~~G---~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~ 320 (353)
T PF00930_consen 245 PDGNEFLWISE-RDG---YRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP 320 (353)
T ss_dssp TTSSEEEEEEE-TTS---SEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE
T ss_pred CCCCEEEEEEE-cCC---CcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe
Confidence 34566667655 333 57899999999876655544433324689999999999998752 3589999999 7766
Q ss_pred EEEEe
Q psy948 1566 SATQI 1570 (1576)
Q Consensus 1566 ~~i~~ 1570 (1576)
+.|..
T Consensus 321 ~~LT~ 325 (353)
T PF00930_consen 321 KCLTC 325 (353)
T ss_dssp EESST
T ss_pred EeccC
Confidence 65543
No 134
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=52.92 E-value=13 Score=40.05 Aligned_cols=60 Identities=32% Similarity=0.841 Sum_probs=41.8
Q ss_pred CcceeeccCCceeccCCCccccCCCCccC---CCCccc--cccccCC-----CceEEEcCCCcEecCCCCCceec
Q psy948 1333 SGYLCTCYQGFIIDKNNAKKCLDVDECAT---GIHHCS--QVCTNLN-----GTYACSCNAGFTLSDGLSGVCKA 1397 (1576)
Q Consensus 1333 ~~~~C~C~~G~~~~~~~~~~c~d~neC~~---~~~~Cs--~lC~n~~-----gsy~C~Cp~G~~l~d~~~~~C~~ 1397 (1576)
..|.|.|.+||.+. +..+|+-..+|.. .+-.|. ..|++.+ ..|+|.|-.||.|..+ +|.+
T Consensus 18 NHfEC~Cnegfvl~--~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~---vCvp 87 (197)
T PF06247_consen 18 NHFECKCNEGFVLK--NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG---VCVP 87 (197)
T ss_dssp SEEEEEESTTEEEE--ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS---SEEE
T ss_pred CceEEEcCCCcEEc--cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC---eEch
Confidence 34999999999987 4678998889964 356773 5888664 5799999999999765 4764
No 135
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=52.89 E-value=5.7e+02 Score=32.17 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=69.7
Q ss_pred eecccCCcEEEEeecc--cceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEE
Q psy948 1435 LDIDPVDEIIYWVDSY--DRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVM 1512 (1576)
Q Consensus 1435 ld~D~~~~~vYWsD~~--~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~ 1512 (1576)
=.|-+...+||++... ...|+++++++.....+....+ .-.--.+.+-++.|=++.... + .-.|.
T Consensus 287 Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~---------~~~~p~~SpdG~~i~~~~~~~-g---~~~i~ 353 (425)
T COG0823 287 PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG---------GNSNPVWSPDGDKIVFESSSG-G---QWDID 353 (425)
T ss_pred ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC---------CCcCccCCCCCCEEEEEeccC-C---ceeeE
Confidence 3456777788776433 3468888887765543322111 111223333344444443210 0 12244
Q ss_pred EEEcCCC-ceEEEeeCCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCCCCcEEEEec
Q psy948 1513 VAHNDGR-YRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQIS 1571 (1576)
Q Consensus 1513 v~~ldG~-~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r~~i~~~ 1571 (1576)
+..+... ..+.|-...+.++..++.+ .+..||-...+.++.+.-..++|..+..|...
T Consensus 354 ~~~~~~~~~~~~lt~~~~~e~ps~~~n-g~~i~~~s~~~~~~~l~~~s~~g~~~~~~~~~ 412 (425)
T COG0823 354 KNDLASGGKIRILTSTYLNESPSWAPN-GRMIMFSSGQGGGSVLSLVSLDGRVSRPLPLA 412 (425)
T ss_pred EeccCCCCcEEEccccccCCCCCcCCC-CceEEEeccCCCCceEEEeeccceeEEEEecc
Confidence 4444222 2555555677777777777 35577888877778888889999987666544
No 136
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=51.88 E-value=3.7e+02 Score=29.76 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=55.7
Q ss_pred ccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCC
Q psy948 1430 RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKG 1509 (1576)
Q Consensus 1430 ~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~ 1509 (1576)
..+.++.+.+....|+.+.. .+.|...++.... ..... ......+..|+++.. ++++.+... .+
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~---~~~~~-----~~~~~~i~~~~~~~~-~~~~~~~~~------~~ 241 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGK---CLGTL-----RGHENGVNSVAFSPD-GYLLASGSE------DG 241 (289)
T ss_pred cccceEEECCCcCEEEEecC-CCcEEEEECCCCc---eecch-----hhcCCceEEEEEcCC-CcEEEEEcC------CC
Confidence 35778888877766665544 5666544443211 11100 011235667787765 555555431 36
Q ss_pred eEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEE
Q psy948 1510 KVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWA 1547 (1576)
Q Consensus 1510 ~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWT 1547 (1576)
+|.+.++........+......+.+|+++|...+|+-+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 78888886433333333334456788888875555443
No 137
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=51.71 E-value=8.1 Score=23.28 Aligned_cols=11 Identities=36% Similarity=0.966 Sum_probs=8.4
Q ss_pred EEEcCCCcEec
Q psy948 1378 ACSCNAGFTLS 1388 (1576)
Q Consensus 1378 ~C~Cp~G~~l~ 1388 (1576)
+|.|++||++.
T Consensus 1 ~C~C~~G~~G~ 11 (13)
T PF12661_consen 1 TCQCPPGWTGP 11 (13)
T ss_dssp EEEE-TTEETT
T ss_pred CccCcCCCcCC
Confidence 59999999874
No 138
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=50.75 E-value=1.6e+02 Score=37.06 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=59.5
Q ss_pred eeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEeeCCCCCc
Q psy948 1453 NIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESP 1532 (1576)
Q Consensus 1453 ~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~~~l~~P 1532 (1576)
.|+...++......++. ..+.-...++-+-+++|-++-.. + ....|.+.+++|+....|. +.
T Consensus 219 ~i~~~~l~~g~~~~i~~---------~~g~~~~P~fspDG~~l~f~~~r-d---g~~~iy~~dl~~~~~~~Lt-----~~ 280 (425)
T COG0823 219 RIYYLDLNTGKRPVILN---------FNGNNGAPAFSPDGSKLAFSSSR-D---GSPDIYLMDLDGKNLPRLT-----NG 280 (425)
T ss_pred eEEEEeccCCccceeec---------cCCccCCccCCCCCCEEEEEECC-C---CCccEEEEcCCCCcceecc-----cC
Confidence 46666666554444332 11223334555556777666442 2 2567999999998755443 33
Q ss_pred eEEEEe----cCCCeEE-EEecCCCCcEEEeecCCCCcEEEEec
Q psy948 1533 SSIALD----PTLGKMF-WAETGASPRIESAWMDGSHRSATQIS 1571 (1576)
Q Consensus 1533 ~~IavD----p~~G~LY-WTD~g~~~~Iera~mDGs~r~~i~~~ 1571 (1576)
.+|... |.-.+|+ -+|.+..|+|.+.+++|+..+.|..+
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 333333 3334444 45667788999999999987655543
No 139
>KOG2055|consensus
Probab=50.55 E-value=5.9e+02 Score=31.69 Aligned_cols=31 Identities=10% Similarity=0.185 Sum_probs=23.4
Q ss_pred CCCCCceEEEEecCCCeEEEEecCCCCcEEE
Q psy948 1527 ENLESPSSIALDPTLGKMFWAETGASPRIES 1557 (1576)
Q Consensus 1527 ~~l~~P~~IavDp~~G~LYWTD~g~~~~Ier 1557 (1576)
+.+..++.+|.-|..|||-....+....+++
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 4667889999999999998877654444544
No 140
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=49.73 E-value=2.1e+02 Score=33.24 Aligned_cols=66 Identities=15% Similarity=0.275 Sum_probs=37.9
Q ss_pred ecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEee-C--------------CCCCceEEEEecCCCeEEEEecCCC
Q psy948 1488 VDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVS-E--------------NLESPSSIALDPTLGKMFWAETGAS 1552 (1576)
Q Consensus 1488 VDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~-~--------------~l~~P~~IavDp~~G~LYWTD~g~~ 1552 (1576)
+-|+.+.||---- .+..|.+.++.......++. + ..+-..|||.||..+.||.|=. .=
T Consensus 180 LE~i~G~IyANVW------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK-~W 252 (264)
T PF05096_consen 180 LEYINGKIYANVW------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK-LW 252 (264)
T ss_dssp EEEETTEEEEEET------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET-T-
T ss_pred EEEEcCEEEEEeC------CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC-CC
Confidence 4556666653221 14678888775444333331 0 1234579999999999998852 23
Q ss_pred CcEEEeec
Q psy948 1553 PRIESAWM 1560 (1576)
Q Consensus 1553 ~~Iera~m 1560 (1576)
|++.+..+
T Consensus 253 p~lyeV~l 260 (264)
T PF05096_consen 253 PKLYEVKL 260 (264)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEE
Confidence 56666544
No 141
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=48.86 E-value=60 Score=41.79 Aligned_cols=75 Identities=21% Similarity=0.436 Sum_probs=50.8
Q ss_pred eeccCCcceeeecCCCCeEEEeecCCCC-------------CCCCCeEEEEEcCCC-------ceEEEee----------
Q psy948 1477 IKSIGKLTAIAVDWIAHNIYWTVSDRSG-------------SKPKGKVMVAHNDGR-------YRRSLVS---------- 1526 (1576)
Q Consensus 1477 ~~~~~~p~glAVDwv~~nLYWTD~~~~~-------------~~~~~~I~v~~ldG~-------~~~~lv~---------- 1526 (1576)
.+.+..|++|+|++.++.||++-++... ....+.|.+..+.+. ...+++.
T Consensus 346 AT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~ 425 (524)
T PF05787_consen 346 ATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGN 425 (524)
T ss_pred cccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccc
Confidence 3467899999999999999999665320 112367877776654 2223332
Q ss_pred -------CCCCCceEEEEecCCCeEEEEecCCC
Q psy948 1527 -------ENLESPSSIALDPTLGKMFWAETGAS 1552 (1576)
Q Consensus 1527 -------~~l~~P~~IavDp~~G~LYWTD~g~~ 1552 (1576)
..+..|-.|++|| .|.|+..+-+..
T Consensus 426 ~~~~~~~~~f~sPDNL~~d~-~G~LwI~eD~~~ 457 (524)
T PF05787_consen 426 GSNKCDDNGFASPDNLAFDP-DGNLWIQEDGGG 457 (524)
T ss_pred ccCcccCCCcCCCCceEECC-CCCEEEEeCCCC
Confidence 2367899999999 577777665433
No 142
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=48.68 E-value=14 Score=28.48 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=16.6
Q ss_pred cccccceeCCCeeeeecCCCcccCCC
Q psy948 1087 QCGHKCVDTLTGYYCECNTGYNDDDI 1112 (1576)
Q Consensus 1087 ~Csq~C~Nt~Gsy~C~C~~Gy~l~~~ 1112 (1576)
.|...|..... +.|.|++||.|++.
T Consensus 7 ~CpA~CDpn~~-~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 7 ECPADCDPNSP-GQCFCPEGYILDEG 31 (34)
T ss_pred cCCCccCCCCC-CceeCCCceEecCC
Confidence 34455654322 38999999998753
No 143
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=45.99 E-value=2e+02 Score=35.51 Aligned_cols=290 Identities=15% Similarity=0.188 Sum_probs=147.3
Q ss_pred EEEecC--CCcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCCeEEEEcCC--CCeEEEEeCCCCceEEEEe--C-
Q psy948 1209 VYFSSW--NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIVIS--G- 1281 (1576)
Q Consensus 1209 lywtd~--g~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~rlYw~D~~--~~~I~s~~~dG~~r~~v~~--~- 1281 (1576)
-+|-.. |...+|+...-.|...+.+|....++.||. -..+|+|+.... ...|.|++++|.+.+...+ .
T Consensus 195 P~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~Pm-----IV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdY 269 (668)
T COG4946 195 PHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPM-----IVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDY 269 (668)
T ss_pred cccccccCCccceEEEEecCCcceeeeeecCCCcCCce-----EEcceEEEEecccCccceEEeccCCchhhhcCCchhc
Confidence 356554 445688887777878889999999999997 346899998764 4789999999997543221 1
Q ss_pred --CCccceeEEee--eCCeEEEeccCCCcceeeccccc---cccccce--eccccc----ccCCCcceeeccCCceeccC
Q psy948 1282 --QKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNA---REIQAGI--LHHCMN----ITGGSGYLCTCYQGFIIDKN 1348 (1576)
Q Consensus 1282 --~~~~~P~~lav--fed~lYwtd~~~~~i~~~~k~~~---~~~~~~~--~~~c~n----~~g~~~~~C~C~~G~~~~~~ 1348 (1576)
..+..-----| ..+.||.-|..+.++.+.+---. +..+... ...-++ ..|- +.-....|-....
T Consensus 270 Y~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd--~ia~VSRGkaFi~- 346 (668)
T COG4946 270 YPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD--YIALVSRGKAFIM- 346 (668)
T ss_pred cccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc--EEEEEecCcEEEE-
Confidence 01111001112 35678888998888877653211 1000000 000000 0110 1111111110000
Q ss_pred CCccccCCCCccCCCCccccccccCCCceEEEcCCCcEecCCCCCc--ee--ccCCceEEEEecCC-ceeeecccccccc
Q psy948 1349 NAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGV--CK--ANDNKLTIVYSNGP-EIRAYETHKRRFR 1423 (1576)
Q Consensus 1349 ~~~~c~d~neC~~~~~~Cs~lC~n~~gsy~C~Cp~G~~l~d~~~~~--C~--~~~~~~~ll~s~~~-~Ir~i~~~~~~~~ 1423 (1576)
+ =-.||.+.-+.... -+ ......+++-.+.. .|-.+...+..+.
T Consensus 347 -----------------------~--------~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 347 -----------------------R--------PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred -----------------------C--------CCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE
Confidence 0 01123222111100 00 11112222222222 2333344444444
Q ss_pred ccccccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCC
Q psy948 1424 DVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRS 1503 (1576)
Q Consensus 1424 ~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~ 1503 (1576)
....+..+|.+|.+++..+.+-.++- ...|+.+.++..+...+- -+.-+..+++++-..++-|=++ -.
T Consensus 396 r~e~~lg~I~av~vs~dGK~~vvaNd-r~el~vididngnv~~id--------kS~~~lItdf~~~~nsr~iAYa---fP 463 (668)
T COG4946 396 RIEKDLGNIEAVKVSPDGKKVVVAND-RFELWVIDIDNGNVRLID--------KSEYGLITDFDWHPNSRWIAYA---FP 463 (668)
T ss_pred EeeCCccceEEEEEcCCCcEEEEEcC-ceEEEEEEecCCCeeEec--------ccccceeEEEEEcCCceeEEEe---cC
Confidence 44556778888888887776766543 345665665544322211 1112233444444444422222 12
Q ss_pred CCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEecC
Q psy948 1504 GSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETG 1550 (1576)
Q Consensus 1504 ~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g 1550 (1576)
....+..|.+.+++|...-.+. +....-.+=|.||...|||+.-..
T Consensus 464 ~gy~tq~Iklydm~~~Kiy~vT-T~ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 464 EGYYTQSIKLYDMDGGKIYDVT-TPTAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred cceeeeeEEEEecCCCeEEEec-CCcccccCcccCCCCcEEEEEecc
Confidence 2334678999999996433332 344455678999999999998754
No 144
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=42.84 E-value=95 Score=24.43 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=25.9
Q ss_pred CCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEe
Q psy948 1492 AHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALD 1538 (1576)
Q Consensus 1492 ~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavD 1538 (1576)
.+.||-++.+ .++|.+.++.......-+.. ...|++|+++
T Consensus 3 ~~~lyv~~~~------~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 3 GTKLYVTNSG------SNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCEEEEEeCC------CCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 5678888864 57788887744332223333 4789999874
No 145
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.48 E-value=2.4e+02 Score=31.55 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=24.5
Q ss_pred CCCCCceEEEEecCCCeEEEEecCCCCcEEEeecCC
Q psy948 1527 ENLESPSSIALDPTLGKMFWAETGASPRIESAWMDG 1562 (1576)
Q Consensus 1527 ~~l~~P~~IavDp~~G~LYWTD~g~~~~Iera~mDG 1562 (1576)
...+-+.|||.+|.++++|-|-.. =|.+.-..+++
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTGK~-wp~lfEVk~~~ 260 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITGKL-WPLLFEVKLDE 260 (262)
T ss_pred cccccccceeecCcCCeEEEecCc-CceeEEEEecC
Confidence 445678899999999999998632 24555444444
No 146
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=41.85 E-value=4e+02 Score=30.56 Aligned_cols=71 Identities=15% Similarity=0.237 Sum_probs=41.5
Q ss_pred cccceeeec--ccCCcEEE-EeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecC
Q psy948 1429 ERRIEALDI--DPVDEIIY-WVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSD 1501 (1576)
Q Consensus 1429 ~~~i~ald~--D~~~~~vY-WsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~ 1501 (1576)
.+.+.++.. +++++-.| +....++.|....+.....+.|.......+.+ -.+-+||.+|-.+++||..+.+
T Consensus 152 ~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~--~tQTEG~VaDdEtG~LYIaeEd 225 (364)
T COG4247 152 SSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKI--PTQTEGMVADDETGFLYIAEED 225 (364)
T ss_pred cccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeec--CCcccceeeccccceEEEeecc
Confidence 444554443 55555555 33445577766665544444443222122222 2367899999999999999764
No 147
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=37.33 E-value=2.1e+02 Score=35.10 Aligned_cols=155 Identities=15% Similarity=0.170 Sum_probs=63.6
Q ss_pred Cceeeecccccccccccccc-ccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccc-----eeeee-ccCC
Q psy948 1410 PEIRAYETHKRRFRDVISDE-RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQ-----DLGIK-SIGK 1482 (1576)
Q Consensus 1410 ~~Ir~i~~~~~~~~~~v~~~-~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~-----~~~~~-~~~~ 1482 (1576)
..++.+.+.+..+.++.... .+..+.-+-+.+..|||.. ..+.+++++|.......+...... ..++. .-..
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~ 138 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTK 138 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSE
T ss_pred cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccE
Confidence 44555666655555554322 1222233346677877654 235778888776554333221110 00000 0111
Q ss_pred cceeeecCCCCeEEEeecC----CCCCCCCCeEEEEEcCCCceEEEeeCC--CCCceEEEEecCCCeEEEEecCC----C
Q psy948 1483 LTAIAVDWIAHNIYWTVSD----RSGSKPKGKVMVAHNDGRYRRSLVSEN--LESPSSIALDPTLGKMFWAETGA----S 1552 (1576)
Q Consensus 1483 p~glAVDwv~~nLYWTD~~----~~~~~~~~~I~v~~ldG~~~~~lv~~~--l~~P~~IavDp~~G~LYWTD~g~----~ 1552 (1576)
..|+++.-..... -++.. ........+|...+|.+..+++|+... |.+|..=-.||. .|=+.-.|+ .
T Consensus 139 ~~g~e~~~~d~~~-l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~--li~fCHEGpw~~Vd 215 (386)
T PF14583_consen 139 LVGIEISREDWKP-LTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPT--LIMFCHEGPWDLVD 215 (386)
T ss_dssp EEEEEEEGGG------SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEE--EEEEEE-S-TTTSS
T ss_pred EEEEEEeehhccC-ccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCC--EEEEeccCCcceec
Confidence 2233322110000 01000 001123578999999888888888633 244444444543 333444343 2
Q ss_pred CcEEEeecCCCCcEEE
Q psy948 1553 PRIESAWMDGSHRSAT 1568 (1576)
Q Consensus 1553 ~~Iera~mDGs~r~~i 1568 (1576)
.||+-.++||++...|
T Consensus 216 ~RiW~i~~dg~~~~~v 231 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKV 231 (386)
T ss_dssp -SEEEEETTS---EES
T ss_pred eEEEEEEcCCCcceee
Confidence 5999999999987655
No 148
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.69 E-value=3.9e+02 Score=32.30 Aligned_cols=173 Identities=13% Similarity=0.043 Sum_probs=0.0
Q ss_pred cEecCCCCCceeccCCceEEEEecCCceeeeccccccccccccccccceeeecccCCcEEEEeecccceeEEEeeccccc
Q psy948 1385 FTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK 1464 (1576)
Q Consensus 1385 ~~l~d~~~~~C~~~~~~~~ll~s~~~~Ir~i~~~~~~~~~~v~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~ 1464 (1576)
+.|..+.+ ++++.|.+-.-.++........++.....+--.-.-|..++-|.+==..+++..+.|+....
T Consensus 100 ~~ls~dgk----------~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 100 FALSADGK----------FLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp EEE-TTSS----------EEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSS
T ss_pred eEEccCCc----------EEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCC
Q ss_pred ceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEeeCCCCCceE----------
Q psy948 1465 GQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSS---------- 1534 (1576)
Q Consensus 1465 ~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~---------- 1534 (1576)
.. ......+....-.--..=|+.-.++.+||+.. .+.|..+.+.|...+.+-...+.....
T Consensus 170 ~~--~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy-------~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 170 EA--QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY-------EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EE--EEEEEESSTTTS-B-S--EEETTTTEEEEEBT-------TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred Ee--EeeccccCCCCcccccccceECCCCeEEEEec-------CCEEEEEeccCCcccccCcccccCccccccCcCCcce
Q ss_pred --EEEecCCCeEEEEe------cCCCCcEEEeecCCCCcEEEEecCCCCC
Q psy948 1535 --IALDPTLGKMFWAE------TGASPRIESAWMDGSHRSATQISNRQAP 1576 (1576)
Q Consensus 1535 --IavDp~~G~LYWTD------~g~~~~Iera~mDGs~r~~i~~~~~~~P 1576 (1576)
+|+++.+++||..- ....|.=|-.-+|-..++.|..-+|..|
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~ 290 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP 290 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc
No 149
>KOG0266|consensus
Probab=34.66 E-value=5.6e+02 Score=32.44 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=59.7
Q ss_pred cccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCC
Q psy948 1427 SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSK 1506 (1576)
Q Consensus 1427 ~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~ 1506 (1576)
.+...+.+++|.+.. .++.+-...++|+--++........+.+ ..+.+.++++.. .++++|+-+.
T Consensus 244 gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~--------hs~~is~~~f~~-d~~~l~s~s~----- 308 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKG--------HSDGISGLAFSP-DGNLLVSASY----- 308 (456)
T ss_pred CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeec--------cCCceEEEEECC-CCCEEEEcCC-----
Confidence 344557899999998 6666666677776555544222222111 123567888874 5667777543
Q ss_pred CCCeEEEEEcCCCceE--EEeeCCCCC--c-eEEEEecCCCeEEEEe
Q psy948 1507 PKGKVMVAHNDGRYRR--SLVSENLES--P-SSIALDPTLGKMFWAE 1548 (1576)
Q Consensus 1507 ~~~~I~v~~ldG~~~~--~lv~~~l~~--P-~~IavDp~~G~LYWTD 1548 (1576)
.+.|.+-++.+.... .++. +... | ..+...|...| .|+-
T Consensus 309 -d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~-ll~~ 352 (456)
T KOG0266|consen 309 -DGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNGKY-LLSA 352 (456)
T ss_pred -CccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCCcE-EEEe
Confidence 578999888776522 2232 2233 3 56666655444 4443
No 150
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=33.99 E-value=2e+02 Score=37.30 Aligned_cols=91 Identities=15% Similarity=0.200 Sum_probs=54.4
Q ss_pred eEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCCeEEEEcCCCC------------eEE
Q psy948 1199 GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD------------YIA 1266 (1576)
Q Consensus 1199 ~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~rlYw~D~~~~------------~I~ 1266 (1576)
.+++||..++|||---...| .+|..| ..+++..-.=+|||..++++-|.-.... .+.
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p------~~~~~r-----~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSP------WNSHLR-----PGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCC------CCCCCC-----CCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 46999999999997643333 233332 1233444455899999999988754421 222
Q ss_pred EEeCCCCceEEEEeCCCccceeEEeeeCCeEEEeccCCCcceee
Q psy948 1267 SVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRA 1310 (1576)
Q Consensus 1267 s~~~dG~~r~~v~~~~~~~~P~~lavfed~lYwtd~~~~~i~~~ 1310 (1576)
.+..+|..+.+|+. +-..+++|..|..++.+...
T Consensus 307 d~~~~G~~~~~v~~----------~~K~G~~~vlDr~tG~~i~~ 340 (527)
T TIGR03075 307 DLKKDGKPRKLLAH----------ADRNGFFYVLDRTNGKLLSA 340 (527)
T ss_pred EeccCCcEEEEEEE----------eCCCceEEEEECCCCceecc
Confidence 22334444444432 23457889999888766543
No 151
>KOG0315|consensus
Probab=32.21 E-value=4.1e+02 Score=30.47 Aligned_cols=126 Identities=11% Similarity=0.128 Sum_probs=74.3
Q ss_pred EEEEecCCceeeeccccccccccc---cccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeec
Q psy948 1403 TIVYSNGPEIRAYETHKRRFRDVI---SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKS 1479 (1576)
Q Consensus 1403 ~ll~s~~~~Ir~i~~~~~~~~~~v---~~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~ 1479 (1576)
+|..+....||.+.+....-.++. ...+++.+|.|......+| +-...+++.--.|....-.. .+..
T Consensus 54 ~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR---------~~~~ 123 (311)
T KOG0315|consen 54 DLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQR---------NYQH 123 (311)
T ss_pred hhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccch---------hccC
Confidence 344555567777766554433332 2347889999987666665 44445554333333211100 1222
Q ss_pred cCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCC-ceEEEeeCCCCCceEEEEecCCCeEE
Q psy948 1480 IGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGR-YRRSLVSENLESPSSIALDPTLGKMF 1545 (1576)
Q Consensus 1480 ~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~-~~~~lv~~~l~~P~~IavDp~~G~LY 1545 (1576)
...+..+.+-+--..|+-.|. .+.|.|=+|... ....|+-+.+...++|+|+|.-.+|-
T Consensus 124 ~spVn~vvlhpnQteLis~dq-------sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 124 NSPVNTVVLHPNQTELISGDQ-------SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred CCCcceEEecCCcceEEeecC-------CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEE
Confidence 345566777777777887775 477999888665 44566655666668999998654443
No 152
>PRK02888 nitrous-oxide reductase; Validated
Probab=31.62 E-value=3.8e+02 Score=35.13 Aligned_cols=113 Identities=5% Similarity=-0.107 Sum_probs=58.6
Q ss_pred CCcceEEEeCCcceEEEecCCCcCeEEEEecCCCCcEEEEeccCCCCCcceEEEeccCCeEEEEcCCCCeEEEEeCCC--
Q psy948 1195 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG-- 1272 (1576)
Q Consensus 1195 ~~P~~iavdP~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~~~~~l~~P~gLaiD~~~~rlYw~D~~~~~I~s~~~dG-- 1272 (1576)
.+|+.++++|..+++|++..........+.|+-..+..++. +.|+...++-...+.+|+ ..+.+..++...
T Consensus 235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv----fni~~iea~vkdGK~~~V---~gn~V~VID~~t~~ 307 (635)
T PRK02888 235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV----FNIARIEEAVKAGKFKTI---GGSKVPVVDGRKAA 307 (635)
T ss_pred CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE----EchHHHHHhhhCCCEEEE---CCCEEEEEECCccc
Confidence 48999999999999999965433222333333323222322 223222222122334443 234455554332
Q ss_pred -CceEEEEeCCCccceeEEee--eCCeEEEeccCCCcceeecccc
Q psy948 1273 -KHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFN 1314 (1576)
Q Consensus 1273 -~~r~~v~~~~~~~~P~~lav--fed~lYwtd~~~~~i~~~~k~~ 1314 (1576)
..+.++..-.--..|.+|++ .+.++|.+...+..|..++.-.
T Consensus 308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred cCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 01233221112334666665 6789999998888776665433
No 153
>KOG4649|consensus
Probab=31.26 E-value=8.8e+02 Score=28.14 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=10.3
Q ss_pred ecccCCcEEEEeeccccee
Q psy948 1436 DIDPVDEIIYWVDSYDRNI 1454 (1576)
Q Consensus 1436 d~D~~~~~vYWsD~~~~~I 1454 (1576)
++|++++.|||-..-..+|
T Consensus 37 avd~~sG~~~We~ilg~Ri 55 (354)
T KOG4649|consen 37 AVDPQSGNLIWEAILGVRI 55 (354)
T ss_pred EecCCCCcEEeehhhCcee
Confidence 3456666666654433344
No 154
>KOG1407|consensus
Probab=31.22 E-value=7e+02 Score=28.92 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=34.8
Q ss_pred eeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCe
Q psy948 1485 AIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGK 1543 (1576)
Q Consensus 1485 glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~ 1543 (1576)
-|+.. ..++||+...+ .+.|++.....-.+..-|++.-..-..|.++|...|
T Consensus 152 e~~w~-~~nd~Fflt~G------lG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 152 EISWN-NSNDLFFLTNG------LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred eeeec-CCCCEEEEecC------CceEEEEeccccccccccccCCcceEEEEECCCCce
Confidence 44554 67788888765 689999887654444444444455678999997443
No 155
>KOG1274|consensus
Probab=29.66 E-value=9e+02 Score=32.73 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=50.9
Q ss_pred EEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEE
Q psy948 1444 IYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRS 1523 (1576)
Q Consensus 1444 vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~ 1523 (1576)
.|.+-+.+++|.|+.+.......++..+- -..+-+||+--+.++-.... .-.|.+.+++-.....
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rft--------lp~r~~~v~g~g~~iaagsd-------D~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFT--------LPIRDLAVSGSGKMIAAGSD-------DTAVKLLNLDDSSQEK 132 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeee--------ccceEEEEecCCcEEEeecC-------ceeEEEEeccccchhe
Confidence 45556677788888777665554443221 23467788855554443332 2457777664443433
Q ss_pred EeeCCCCCceEEEEecCCCeEEEEe
Q psy948 1524 LVSENLESPSSIALDPTLGKMFWAE 1548 (1576)
Q Consensus 1524 lv~~~l~~P~~IavDp~~G~LYWTD 1548 (1576)
.+...-....+|.++|...+|=-+.
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvss 157 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVSS 157 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEEe
Confidence 3333333446788888776665554
No 156
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=28.84 E-value=1.4e+02 Score=23.45 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=25.0
Q ss_pred cCCeEEEEcCCCCeEEEEeCCCCceEEEEeCCCccceeEEee
Q psy948 1251 FTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL 1292 (1576)
Q Consensus 1251 ~~~rlYw~D~~~~~I~s~~~dG~~r~~v~~~~~~~~P~~lav 1292 (1576)
.+++||.++...+.|..++..... ++..-.-..+|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~--~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNK--VIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCe--EEEEEECCCCCceEEe
Confidence 357899999999999998874332 2221111356766654
No 157
>KOG0649|consensus
Probab=26.87 E-value=9.1e+02 Score=27.71 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=62.2
Q ss_pred cccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCCC
Q psy948 1429 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPK 1508 (1576)
Q Consensus 1429 ~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~ 1508 (1576)
...|.||-.||.++.|+.+- +...||.+++..........+ -.+.+..++.-..+..|+=- + ..
T Consensus 114 vPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rG--------HtDYvH~vv~R~~~~qilsG-~------ED 177 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRG--------HTDYVHSVVGRNANGQILSG-A------ED 177 (325)
T ss_pred CCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcC--------CcceeeeeeecccCcceeec-C------CC
Confidence 45688888899999888875 667777766643322111111 01233344443334444321 1 13
Q ss_pred CeEEEEEcCCCceEEEee----CCCCCc------eEEEEecCCCeEEEEecCCCCcEEEeecCCCCcEEEE
Q psy948 1509 GKVMVAHNDGRYRRSLVS----ENLESP------SSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQ 1569 (1576)
Q Consensus 1509 ~~I~v~~ldG~~~~~lv~----~~l~~P------~~IavDp~~G~LYWTD~g~~~~Iera~mDGs~r~~i~ 1569 (1576)
+++.+=++........|. .++-+| .++|++.. |.--|..|+..-.+|--+.-+.++
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed-----WlvCGgGp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED-----WLVCGGGPKLSLWHLRSSESTCVF 243 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc-----eEEecCCCceeEEeccCCCceEEE
Confidence 556666554443333331 233333 35555533 445566667777777766655544
No 158
>PTZ00421 coronin; Provisional
Probab=26.82 E-value=1.4e+03 Score=29.40 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=54.1
Q ss_pred cccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeee-ccCCcceeeecCCCCeEEEeecCCCCCCC
Q psy948 1429 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIK-SIGKLTAIAVDWIAHNIYWTVSDRSGSKP 1507 (1576)
Q Consensus 1429 ~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~-~~~~p~glAVDwv~~nLYWTD~~~~~~~~ 1507 (1576)
...+.+|+|.+..+.++.+-...++|..-++.......... .....+. ....+..|++.+...++..+-+.
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~--~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~------ 146 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS--DPIVHLQGHTKKVGIVSFHPSAMNVLASAGA------ 146 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC--cceEEecCCCCcEEEEEeCcCCCCEEEEEeC------
Confidence 44678899988555455555556666544443211000000 0000111 12345677777766677666442
Q ss_pred CCeEEEEEcCCCceEEEeeCCCCCceEEEEecC
Q psy948 1508 KGKVMVAHNDGRYRRSLVSENLESPSSIALDPT 1540 (1576)
Q Consensus 1508 ~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~ 1540 (1576)
.++|.+-++........+........+|+..|.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECC
Confidence 467888887654333333333444567777764
No 159
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=26.63 E-value=1.9e+02 Score=34.32 Aligned_cols=62 Identities=10% Similarity=0.174 Sum_probs=43.0
Q ss_pred eeeeeccCCcceeeecCCCCeEEEeecCCCCCCCCCeEEEEEcC-CCceEEEeeCCCCCceEEEEecCCCeEEEE
Q psy948 1474 DLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHND-GRYRRSLVSENLESPSSIALDPTLGKMFWA 1547 (1576)
Q Consensus 1474 ~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ld-G~~~~~lv~~~l~~P~~IavDp~~G~LYWT 1547 (1576)
.++.+++..|++. -|-.++||..|++ ++.|...+++ |+...+.. --..|+||+.. -.++|..
T Consensus 196 evl~~GLsmPhSP--RWhdgrLwvldsg------tGev~~vD~~~G~~e~Va~--vpG~~rGL~f~--G~llvVg 258 (335)
T TIGR03032 196 EVVASGLSMPHSP--RWYQGKLWLLNSG------RGELGYVDPQAGKFQPVAF--LPGFTRGLAFA--GDFAFVG 258 (335)
T ss_pred CEEEcCccCCcCC--cEeCCeEEEEECC------CCEEEEEcCCCCcEEEEEE--CCCCCccccee--CCEEEEE
Confidence 4455667777765 5779999999997 6889999987 66544332 33478999987 3344443
No 160
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=26.51 E-value=5.7e+02 Score=31.07 Aligned_cols=94 Identities=16% Similarity=0.214 Sum_probs=57.6
Q ss_pred CcceEEEe--CCcceEEEecCCCcCeEEEEecCCCCcEEEEeccCCCCCcc--eEEEeccCCeEEEEcCC----CCeEEE
Q psy948 1196 DPRGITLH--PGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN--ALTLDYFTERLYWADAH----LDYIAS 1267 (1576)
Q Consensus 1196 ~P~~iavd--P~~g~lywtd~g~~~~I~ra~mdGs~~~~iv~~~~~l~~P~--gLaiD~~~~rlYw~D~~----~~~I~s 1267 (1576)
....+.+- ...++|+++....-.+|....++|...+.|.. -.|-. -+++|..+++||+.-.. ...|.+
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~----G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS----GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-----SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred eecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc----CceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 33444443 44556666664345799999999988554432 22332 58899999999999886 458999
Q ss_pred EeCC-CCceEEEEeCCCccceeEEeeeCC
Q psy948 1268 VDLD-GKHKHIVISGQKVPHVFALTLFED 1295 (1576)
Q Consensus 1268 ~~~d-G~~r~~v~~~~~~~~P~~lavfed 1295 (1576)
++++ |...+.|- .....| +.+++-.+
T Consensus 312 v~~~~~~~~~~LT-~~~~~~-~~~~~Spd 338 (353)
T PF00930_consen 312 VSLDSGGEPKCLT-CEDGDH-YSASFSPD 338 (353)
T ss_dssp EETTETTEEEESS-TTSSTT-EEEEE-TT
T ss_pred EEeCCCCCeEecc-CCCCCc-eEEEECCC
Confidence 9999 66555443 222333 44444433
No 161
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=26.12 E-value=3.7e+02 Score=32.12 Aligned_cols=51 Identities=8% Similarity=-0.054 Sum_probs=34.3
Q ss_pred ccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEee
Q psy948 1438 DPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTV 1499 (1576)
Q Consensus 1438 D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD 1499 (1576)
.+.+++||.+|.+.+.|.++..+....+.+.. --+.|.||++. ++.+|..-
T Consensus 209 RWhdgrLwvldsgtGev~~vD~~~G~~e~Va~---------vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 209 RWYQGKLWLLNSGRGELGYVDPQAGKFQPVAF---------LPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred cEeCCeEEEEECCCCEEEEEcCCCCcEEEEEE---------CCCCCccccee--CCEEEEEe
Confidence 35678999999999999998876333333321 12478899876 55555543
No 162
>KOG1217|consensus
Probab=25.56 E-value=60 Score=40.87 Aligned_cols=52 Identities=35% Similarity=0.800 Sum_probs=39.7
Q ss_pred cceeeccCCceeccCCCccccCCCCccCCCCccc--cccccCCCceEEEcCCCcEecC
Q psy948 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCS--QVCTNLNGTYACSCNAGFTLSD 1389 (1576)
Q Consensus 1334 ~~~C~C~~G~~~~~~~~~~c~d~neC~~~~~~Cs--~lC~n~~gsy~C~Cp~G~~l~d 1389 (1576)
.|.|.|..||.+.... ...++|......|. ..|.+..++|.|.|+.||.+..
T Consensus 151 ~~~c~C~~g~~~~~~~----~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~ 204 (487)
T KOG1217|consen 151 PFRCSCTEGYEGEPCE----TDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGST 204 (487)
T ss_pred ceeeeeCCCccccccc----ccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCc
Confidence 3889999999875322 12268876666674 5799999999999999999864
No 163
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=25.46 E-value=4.6e+02 Score=29.25 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=37.7
Q ss_pred CCeEEEEcCCCCeEEEEeCCCCceEEEEeCCCccceeE-EeeeCCeEEEeccCCCcceeecccccc
Q psy948 1252 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFA-LTLFEDHIYWTDWNTKSINRADKFNAR 1316 (1576)
Q Consensus 1252 ~~rlYw~D~~~~~I~s~~~dG~~r~~v~~~~~~~~P~~-lavfed~lYwtd~~~~~i~~~~k~~~~ 1316 (1576)
+++||.+......+ .+++....+. .+.. +..+.+ +.+.++.||..+ ..+.|+.++..+|+
T Consensus 173 ~~~v~~~~~~g~~~-~~d~~tg~~~--w~~~-~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 DGRVYVSSGDGRVV-AVDLATGEKL--WSKP-ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp TTEEEEECCTSSEE-EEETTTTEEE--EEEC-SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTE
T ss_pred CCEEEEEcCCCeEE-EEECCCCCEE--EEec-CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCC
Confidence 45777777666533 3355544433 2222 444555 677888999888 77888888877665
No 164
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=23.91 E-value=8.4e+02 Score=30.15 Aligned_cols=120 Identities=9% Similarity=0.094 Sum_probs=68.7
Q ss_pred cCCcEEEE-eec--ccceeEEEeecccccceeeecccceeeeeccC--CcceeeecCCCCeEEEeecCCCCCCCCCeEEE
Q psy948 1439 PVDEIIYW-VDS--YDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIG--KLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMV 1513 (1576)
Q Consensus 1439 ~~~~~vYW-sD~--~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~--~p~glAVDwv~~nLYWTD~~~~~~~~~~~I~v 1513 (1576)
...+.+|+ ++. ..++|+++.+........ ..+++..-. ...++++ ..+.|+++.... +..+|.+
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~-----~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~----~~~~l~v 353 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEW-----WTVLIPEDEDVSLEDVSL--FKDYLVLSYREN----GSSRLRV 353 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGE-----EEEEE--SSSEEEEEEEE--ETTEEEEEEEET----TEEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccc-----eeEEcCCCCceeEEEEEE--ECCEEEEEEEEC----CccEEEE
Confidence 34667775 432 345788887766542110 112222222 3455555 467788776542 2578999
Q ss_pred EEcC-CCceEEEeeCCCCCceEEEEecCCCeEEEEec--CCCCcEEEeecCCCCcEEEE
Q psy948 1514 AHND-GRYRRSLVSENLESPSSIALDPTLGKMFWAET--GASPRIESAWMDGSHRSATQ 1569 (1576)
Q Consensus 1514 ~~ld-G~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~--g~~~~Iera~mDGs~r~~i~ 1569 (1576)
.+++ |.....+.........++.-++....||++-. -.++.|.+.+|.-...+++-
T Consensus 354 ~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 354 YDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 9999 66555554333333345555677777777664 45679999999977777654
No 165
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=23.76 E-value=8.6e+02 Score=30.04 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=40.3
Q ss_pred eeeecCCCCeEEEeecCCCCCCCCCeEEEEEcCCCceEEEee-CCCCCceEEE-EecCCCeEEE-----------Eec--
Q psy948 1485 AIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVS-ENLESPSSIA-LDPTLGKMFW-----------AET-- 1549 (1576)
Q Consensus 1485 glAVDwv~~nLYWTD~~~~~~~~~~~I~v~~ldG~~~~~lv~-~~l~~P~~Ia-vDp~~G~LYW-----------TD~-- 1549 (1576)
|..+-..++.|||...+ .++.+++|+....++|.. ...-...+.. ++...-+|.- ++|
T Consensus 85 g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~ 157 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNG-------RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKG 157 (386)
T ss_dssp T-EE-TTSSEEEEEETT-------TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHH
T ss_pred ceEEecCCCeEEEEECC-------CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHH
Confidence 34444567888877542 478888998877666653 1111122222 2332222221 222
Q ss_pred -------CCCCcEEEeecCCCCcEEEEecC
Q psy948 1550 -------GASPRIESAWMDGSHRSATQISN 1572 (1576)
Q Consensus 1550 -------g~~~~Iera~mDGs~r~~i~~~~ 1572 (1576)
....+|.+.+|.+..+++|..++
T Consensus 158 f~e~~~a~p~~~i~~idl~tG~~~~v~~~~ 187 (386)
T PF14583_consen 158 FREFYEARPHCRIFTIDLKTGERKVVFEDT 187 (386)
T ss_dssp HHHHHHC---EEEEEEETTT--EEEEEEES
T ss_pred HHHHHhhCCCceEEEEECCCCceeEEEecC
Confidence 23458999999988888877653
No 166
>KOG0318|consensus
Probab=21.15 E-value=1.2e+03 Score=29.77 Aligned_cols=55 Identities=29% Similarity=0.359 Sum_probs=31.4
Q ss_pred ceEEEEecCCceeeecccccccccccc-ccccceeeecccCCcEEEEeecccceeEE
Q psy948 1401 KLTIVYSNGPEIRAYETHKRRFRDVIS-DERRIEALDIDPVDEIIYWVDSYDRNIRR 1456 (1576)
Q Consensus 1401 ~~~ll~s~~~~Ir~i~~~~~~~~~~v~-~~~~i~ald~D~~~~~vYWsD~~~~~I~r 1456 (1576)
..+|.++-...|..++........++. ..+.|.+|.+.+...+||= -...+.|..
T Consensus 291 d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S-gsyDG~I~~ 346 (603)
T KOG0318|consen 291 DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS-GSYDGHINS 346 (603)
T ss_pred CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe-eccCceEEE
Confidence 344555555555555544333333333 4678899999887766664 345566644
No 167
>KOG0285|consensus
Probab=20.94 E-value=3.3e+02 Score=32.67 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=0.0
Q ss_pred ccccceeeecccCCcEEEEeecccceeEEEeecccccceeeecccceeeeeccCCcceeeecCCCCeEEEeecCCCCCCC
Q psy948 1428 DERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKP 1507 (1576)
Q Consensus 1428 ~~~~i~ald~D~~~~~vYWsD~~~~~I~r~~l~~~~~~~v~~~~~~~~~~~~~~~p~glAVDwv~~nLYWTD~~~~~~~~ 1507 (1576)
.+..+..||+||. +.-|-+-...++|.--++....-...+.+. +.+++|+||-...-.||-.-.+
T Consensus 150 HlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGh--------i~~vr~vavS~rHpYlFs~ged------ 214 (460)
T KOG0285|consen 150 HLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGH--------IETVRGVAVSKRHPYLFSAGED------ 214 (460)
T ss_pred ccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecch--------hheeeeeeecccCceEEEecCC------
Q ss_pred CCeEEEEEcCCCceEEEeeCCCCCceEEEEecCCCeEEEEecCCCCcEE
Q psy948 1508 KGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIE 1556 (1576)
Q Consensus 1508 ~~~I~v~~ldG~~~~~lv~~~l~~P~~IavDp~~G~LYWTD~g~~~~Ie 1556 (1576)
+.|.--+|.-.....-....|...+.|+++|+...|+=.-.....+|+
T Consensus 215 -k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvW 262 (460)
T KOG0285|consen 215 -KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVW 262 (460)
T ss_pred -CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEe
No 168
>KOG1225|consensus
Probab=20.77 E-value=2.9e+02 Score=35.39 Aligned_cols=33 Identities=33% Similarity=0.796 Sum_probs=16.4
Q ss_pred CCCCCCCCcccCCccCCCCccccC-CCcccCceeecC
Q psy948 820 DCTDGSDETECGGFQCKNGTFQCS-SGHCIAAYFRCD 855 (1576)
Q Consensus 820 dC~dgsDE~~C~~~~C~~~~f~C~-~g~Ci~~~~~Cd 855 (1576)
.|.+|---+.|....|+. .|. .|+||+..=+|+
T Consensus 299 iC~~g~~G~dCs~~~cpa---dC~g~G~Ci~G~C~C~ 332 (525)
T KOG1225|consen 299 ICNPGYSGKDCSIRRCPA---DCSGHGKCIDGECLCD 332 (525)
T ss_pred ecCCCccccccccccCCc---cCCCCCcccCCceEeC
Confidence 344444344454444442 353 456776655555
Done!