RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy948
(1576 letters)
>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a
cysteine-rich repeat that plays a central role in
mammalian cholesterol metabolism; the receptor protein
binds LDL and transports it into cells by endocytosis; 7
successive cysteine-rich repeats of about 40 amino acids
are present in the N-terminal of this multidomain
membrane protein; other homologous domains occur in
related receptors, including the very low-density
lipoprotein receptor and the LDL receptor-related
protein/alpha 2-macroglobulin receptor, and in proteins
which are functionally unrelated, such as the C9
component of complement; the binding of calcium is
required for in vitro formation of the native disulfide
isomer and is necessary in establishing and maintaining
the modular structure.
Length = 35
Score = 56.4 bits (137), Expect = 2e-10
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583
C +EF+C NG+CIP+ W CD ++DC DGSDE C
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 56.4 bits (137), Expect = 2e-10
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785
C +EF+C NG+CIP+ W CD ++DC DGSDE C
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 50.7 bits (122), Expect = 2e-08
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 341 CRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
C F+C NG C PS+ +CDG DDC DGSDE++C
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 50.3 bits (121), Expect = 3e-08
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 125 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
C EF C N +CI ++ CDGEDDCGD SDE NC
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 50.3 bits (121), Expect = 3e-08
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 176 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 210
C EF C N +CI ++ CDGEDDCGD SDE NC
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 49.1 bits (118), Expect = 1e-07
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
C F+C++G CI + + CDG+ DC D SDE NC
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 48.7 bits (117), Expect = 1e-07
Identities = 24/34 (70%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDED 412
CP EF+CA NGRCI +SW CDGE DC DGSDE+
Sbjct: 1 CPPNEFRCA-NGRCIPSSWVCDGEDDCGDGSDEE 33
Score = 47.2 bits (113), Expect = 4e-07
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEA 538
F+C N RCIP W+CD E+DCGD SDE
Sbjct: 6 FRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Score = 47.2 bits (113), Expect = 4e-07
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDEA 740
F+C N RCIP W+CD E+DCGD SDE
Sbjct: 6 FRCANGRCIPSSWVCDGEDDCGDGSDEE 33
Score = 46.8 bits (112), Expect = 6e-07
Identities = 19/30 (63%), Positives = 21/30 (70%)
Query: 424 DTEFACRNGHCIPKLWVCDFDNDCGDDSDE 453
EF C NG CIP WVCD ++DCGD SDE
Sbjct: 3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Score = 46.8 bits (112), Expect = 7e-07
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
F+C++G CI + + CDG+ DC D SDE NC
Sbjct: 4 NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 45.7 bits (109), Expect = 1e-06
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 953 SLHKYQCDNGRCIASYQLCDGVDNCGDGSDENN 985
++++C NGRCI S +CDG D+CGDGSDE N
Sbjct: 2 PPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34
Score = 45.7 bits (109), Expect = 2e-06
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C + C + +CIP W CDGE DCGDGSDE
Sbjct: 1 CPPNEFRCA--NGRCIPSSWVCDGEDDCGDGSDE 32
Score = 44.9 bits (107), Expect = 3e-06
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 1040 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
C ++FRC NG+CI VC+ E DC D SDE
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32
Score = 41.8 bits (99), Expect = 4e-05
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGC 1033
+++ C+N +CI + +C+ DDCGD SDE C
Sbjct: 4 NEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35
Score = 40.3 bits (95), Expect = 1e-04
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 664
CP +F+CA+ C+ S +CDG DDCGD SDE
Sbjct: 1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDE 32
Score = 40.3 bits (95), Expect = 1e-04
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 941
CP +F+CA+ C+ S +CDG DDCGD SDE
Sbjct: 1 CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDE 32
Score = 39.5 bits (93), Expect = 2e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLS 864
C F+C++G CI + + CDG+ DC D S
Sbjct: 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGS 30
Score = 39.5 bits (93), Expect = 2e-04
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 475 NYRCIPKWLFCDGKDDCRDGSDEL 498
N RCIP CDG+DDC DGSDE
Sbjct: 10 NGRCIPSSWVCDGEDDCGDGSDEE 33
Score = 38.3 bits (90), Expect = 6e-04
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 678 HKCIPKWLFCDGKDDCRDGSDEL 700
+CIP CDG+DDC DGSDE
Sbjct: 11 GRCIPSSWVCDGEDDCGDGSDEE 33
Score = 31.0 bits (71), Expect = 0.25
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 100 WLCDHDNDCGDGSDE 114
W+CD ++DCGDGSDE
Sbjct: 18 WVCDGEDDCGDGSDE 32
>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain.
Type "B" repeats in low-density lipoprotein (LDL)
receptor that plays a central role in mammalian
cholesterol metabolism. Also present in a variety of
molecules similar to gp300/megalin.
Length = 43
Score = 54.5 bits (132), Expect = 2e-09
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 51 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 89
+ PN L +D+ RLYW D LD I +LDG +
Sbjct: 4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
Score = 54.5 bits (132), Expect = 2e-09
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 1236 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 1274
+ PN L +D+ RLYW D LD I +LDG +
Sbjct: 4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42
Score = 50.3 bits (121), Expect = 4e-08
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
R+L+S L P+ +A+D G+++W + G IE A +DG++R
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWG-LDVIEVANLDGTNR 43
Score = 42.6 bits (101), Expect = 2e-05
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 1275 KHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 1311
+ ++ SG P+ A+ E +YWTDW I A+
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN 37
Score = 37.6 bits (88), Expect = 0.001
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 1425 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM 1459
+ S L +D ++ +YW D I + +
Sbjct: 4 LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANL 38
Score = 33.7 bits (78), Expect = 0.028
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 1187 RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 1229
R L + + P G+ + G +Y++ W L I +DG+N
Sbjct: 1 RTLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTN 42
Score = 33.0 bits (76), Expect = 0.066
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 1479 SIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
+G +AVDWI +YWT + VA+ DG R
Sbjct: 7 GLGHPNGLAVDWIEGRLYWTDWGL------DVIEVANLDGTNR 43
Score = 28.3 bits (64), Expect = 2.8
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 15/44 (34%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSN 44
+ + E R Y+ D I + +DG+N
Sbjct: 14 LAVDWIEGRLYWTDWGLDVIEVAN---------------LDGTN 42
>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A.
Cysteine-rich repeat in the low-density lipoprotein
(LDL) receptor that plays a central role in mammalian
cholesterol metabolism. The N-terminal type A repeats in
LDL receptor bind the lipoproteins. Other homologous
domains occur in related receptors, including the very
low-density lipoprotein receptor and the LDL
receptor-related protein/alpha 2-macroglobulin receptor,
and in proteins which are functionally unrelated, such
as the C9 component of complement. Mutations in the LDL
receptor gene cause familial hypercholesterolemia.
Length = 33
Score = 51.9 bits (125), Expect = 1e-08
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 548 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE 580
C EFQC NG+CIP+ W CD +DC DGSDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 51.9 bits (125), Expect = 1e-08
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 750 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDE 782
C EFQC NG+CIP+ W CD +DC DGSDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 45.7 bits (109), Expect = 2e-06
Identities = 23/33 (69%), Positives = 25/33 (75%)
Query: 340 QCRAGSFQCDNGNCTPSASICDGVDDCRDGSDE 372
C G FQCDNG C PS+ +CDGVDDC DGSDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 44.9 bits (107), Expect = 2e-06
Identities = 22/33 (66%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDE 411
CP EF+C NGRCI +SW CDG DC DGSDE
Sbjct: 2 CPPGEFQCD-NGRCIPSSWVCDGVDDCGDGSDE 33
Score = 44.9 bits (107), Expect = 3e-06
Identities = 19/29 (65%), Positives = 20/29 (68%)
Query: 425 TEFACRNGHCIPKLWVCDFDNDCGDDSDE 453
EF C NG CIP WVCD +DCGD SDE
Sbjct: 5 GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 44.9 bits (107), Expect = 3e-06
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 504 KCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDE 537
C FQC N RCIP W+CD +DCGD SDE
Sbjct: 1 TCPPGE-FQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 44.9 bits (107), Expect = 3e-06
Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 706 KCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDE 739
C FQC N RCIP W+CD +DCGD SDE
Sbjct: 1 TCPPGE-FQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 44.2 bits (105), Expect = 5e-06
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 124 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 156
TC EF C N +CI ++ CDG DDCGD SDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 44.2 bits (105), Expect = 5e-06
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 175 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 207
TC EF C N +CI ++ CDG DDCGD SDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 43.0 bits (102), Expect = 1e-05
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 587 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDE 619
C G FQC +G CI + + CDG DC D SDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 43.0 bits (102), Expect = 1e-05
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
TC +F+C+NG+CI VC+ DC D SDE
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 43.0 bits (102), Expect = 2e-05
Identities = 18/34 (52%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C G+ C + +CIP W CDG DCGDGSDE
Sbjct: 2 CPPGEFQCD--NGRCIPSSWVCDGVDDCGDGSDE 33
Score = 43.0 bits (102), Expect = 2e-05
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 953 SLHKYQCDNGRCIASYQLCDGVDNCGDGSDE 983
++QCDNGRCI S +CDGVD+CGDGSDE
Sbjct: 3 PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 40.3 bits (95), Expect = 1e-04
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDE 896
G FQC +G CI + + CDG DC D SDE
Sbjct: 5 GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 39.2 bits (92), Expect = 3e-04
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 664
CP +FQC + C+ S +CDG DDCGD SDE
Sbjct: 2 CPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
Score = 39.2 bits (92), Expect = 3e-04
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 941
CP +FQC + C+ S +CDG DDCGD SDE
Sbjct: 2 CPPGEFQCDNGR-CIPSSWVCDGVDDCGDGSDE 33
Score = 38.8 bits (91), Expect = 4e-04
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 834 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE 865
C G FQC +G CI + + CDG DC D S+
Sbjct: 1 TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSD 32
Score = 37.6 bits (88), Expect = 0.001
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 475 NYRCIPKWLFCDGKDDCRDGSDE 497
N RCIP CDG DDC DGSDE
Sbjct: 11 NGRCIPSSWVCDGVDDCGDGSDE 33
Score = 37.2 bits (87), Expect = 0.002
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 678 HKCIPKWLFCDGKDDCRDGSDE 699
+CIP CDG DDC DGSDE
Sbjct: 12 GRCIPSSWVCDGVDDCGDGSDE 33
Score = 36.5 bits (85), Expect = 0.003
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDE 1030
++ C N +CI + +C+ VDDCGD SDE
Sbjct: 5 GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33
Score = 29.9 bits (68), Expect = 0.67
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 100 WLCDHDNDCGDGSDE 114
W+CD +DCGDGSDE
Sbjct: 19 WVCDGVDDCGDGSDE 33
>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain
class A.
Length = 37
Score = 50.0 bits (120), Expect = 5e-08
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 547 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583
C EFQC +G+CIP W CD D DC DGSDE C
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 50.0 bits (120), Expect = 5e-08
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 749 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785
C EFQC +G+CIP W CD D DC DGSDE C
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 50.0 bits (120), Expect = 5e-08
Identities = 20/36 (55%), Positives = 21/36 (58%)
Query: 587 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
C FQC SG CI + CDGD DC D SDE NC
Sbjct: 2 TCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 46.1 bits (110), Expect = 1e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 1038 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
STC +F+C +G+CI VC+ + DCED SDE
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDE 34
Score = 45.7 bits (109), Expect = 1e-06
Identities = 19/33 (57%), Positives = 20/33 (60%)
Query: 867 NGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
FQC SG CI + CDGD DC D SDE NC
Sbjct: 5 PDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 45.4 bits (108), Expect = 2e-06
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 339 RQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
C FQC +G C P + +CDG DC DGSDEK+C
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 45.0 bits (107), Expect = 3e-06
Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 378 PCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDED 412
C EF+C +G CI SW CDG+PDC+DGSDE
Sbjct: 2 TCGPDEFQCG-SGECIPMSWVCDGDPDCEDGSDEK 35
Score = 43.4 bits (103), Expect = 1e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
TC +EF C + +CI ++ CDG+ DC D SDE NC
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 43.4 bits (103), Expect = 1e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 174 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 210
TC +EF C + +CI ++ CDG+ DC D SDE NC
Sbjct: 1 STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 43.1 bits (102), Expect = 1e-05
Identities = 18/28 (64%), Positives = 19/28 (67%)
Query: 426 EFACRNGHCIPKLWVCDFDNDCGDDSDE 453
EF C +G CIP WVCD D DC D SDE
Sbjct: 7 EFQCGSGECIPMSWVCDGDPDCEDGSDE 34
Score = 43.1 bits (102), Expect = 1e-05
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 510 DFQCKNNRCIPKRWMCDFENDCGDQSDEAE 539
+FQC + CIP W+CD + DC D SDE
Sbjct: 7 EFQCGSGECIPMSWVCDGDPDCEDGSDEKN 36
Score = 43.1 bits (102), Expect = 1e-05
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 712 DFQCKNNRCIPKRWMCDFENDCGDQSDEAE 741
+FQC + CIP W+CD + DC D SDE
Sbjct: 7 EFQCGSGECIPMSWVCDGDPDCEDGSDEKN 36
Score = 42.3 bits (100), Expect = 3e-05
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 834 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLS 864
C FQC SG CI + CDGD DC D S
Sbjct: 2 TCGPDEFQCGSGECIPMSWVCDGDPDCEDGS 32
Score = 40.4 bits (95), Expect = 1e-04
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 953 SLHKYQCDNGRCIASYQLCDGVDNCGDGSDENN 985
++QC +G CI +CDG +C DGSDE N
Sbjct: 4 GPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKN 36
Score = 39.2 bits (92), Expect = 3e-04
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C + CG +CIP W CDG+ DC DGSDE
Sbjct: 3 CGPDEFQCGSG--ECIPMSWVCDGDPDCEDGSDE 34
Score = 35.3 bits (82), Expect = 0.009
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 475 NYRCIPKWLFCDGKDDCRDGSDELPQNC 502
+ CIP CDG DC DGSDE +NC
Sbjct: 12 SGECIPMSWVCDGDPDCEDGSDE--KNC 37
Score = 33.8 bits (78), Expect = 0.023
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 678 HKCIPKWLFCDGKDDCRDGSDELPQNC 704
+CIP CDG DC DGSDE +NC
Sbjct: 13 GECIPMSWVCDGDPDCEDGSDE--KNC 37
Score = 33.4 bits (77), Expect = 0.042
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 1003 QYTCSNHKCIDRAALCNHVDDCGDLSDELGC 1033
++ C + +CI + +C+ DC D SDE C
Sbjct: 7 EFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37
Score = 33.0 bits (76), Expect = 0.057
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 664
C +FQC S C+ S +CDG DC D SDE
Sbjct: 3 CGPDEFQCGSGE-CIPMSWVCDGDPDCEDGSDE 34
Score = 33.0 bits (76), Expect = 0.057
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 941
C +FQC S C+ S +CDG DC D SDE
Sbjct: 3 CGPDEFQCGSGE-CIPMSWVCDGDPDCEDGSDE 34
Score = 28.4 bits (64), Expect = 2.6
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 100 WLCDHDNDCGDGSDE 114
W+CD D DC DGSDE
Sbjct: 20 WVCDGDPDCEDGSDE 34
>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat
class B. This domain is also known as the YWTD motif
after the most conserved region of the repeat. The YWTD
repeat is found in multiple tandem repeats and has been
predicted to form a beta-propeller structure.
Length = 42
Score = 47.5 bits (114), Expect = 4e-07
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 1207 GYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 1250
G +Y++ +L+A I ++GS+ + + +D+ WPN + +D
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFS--EDLQWPNGIAVDP 42
Score = 40.2 bits (95), Expect = 2e-04
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 1494 NIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDP 1539
+YWT D S + + VA +G RR+L SE+L+ P+ IA+DP
Sbjct: 2 RLYWT--D---SSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42
Score = 37.9 bits (89), Expect = 0.001
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 30 KERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 65
RA I ++GS+ + + +D+ WPN + +D
Sbjct: 9 SLRASISVADLNGSDRRTLFS--EDLQWPNGIAVDP 42
Score = 33.3 bits (77), Expect = 0.038
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1253 ERLYWADAHLD-YIASVDLDGKHKHIVISGQKVPHVFALTLFE 1294
RLYW D+ L I+ DL+G + + S + + +
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSED-LQWPNGIAVDP 42
Score = 33.3 bits (77), Expect = 0.050
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 68 ERLYWADAHLD-YIASVDLDGKHKHIVISGQKGW 100
RLYW D+ L I+ DL+G + + S W
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQW 34
Score = 32.1 bits (74), Expect = 0.11
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 1179 VAELDGTNRKTL-KTAIQDPRGITLHP 1204
VA+L+G++R+TL +Q P GI + P
Sbjct: 16 VADLNGSDRRTLFSEDLQWPNGIAVDP 42
Score = 29.8 bits (68), Expect = 0.74
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 1542 GKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
G+++W ++ I A ++GS R + Q P
Sbjct: 1 GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWP 35
>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate,
extracellular matrix molecules mediate cell-matrix and
matrix-matrix interactions thereby providing tissue
integrity. Some members of the matrilin family are
expressed specifically in developing cartilage rudiments.
The matrilin family consists of at least four members.
All the members of the matrilin family contain VWA
domains, EGF-like domains and a heptad repeat
coiled-coiled domain at the carboxy terminus which is
responsible for the oligomerization of the matrilins. The
VWA domains have been shown to be essential for matrilin
network formation by interacting with matrix ligands.
Length = 224
Score = 48.5 bits (116), Expect = 7e-06
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 1353 CLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLS 1388
C+ D CAT H C QVC + G+Y C+C G+ L
Sbjct: 184 CVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALL 219
>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like. The
sequences found in this family are similar to a region
found in the beta-subunit of glucosidase II, which is
also known as protein kinase C substrate 80K-H (PRKCSH).
The enzyme catalyzes the sequential removal of two
alpha-1,3-linked glucose residues in the second step of
N-linked oligosaccharide processing. The beta subunit is
required for the solubility and stability of the
heterodimeric enzyme, and is involved in retaining the
enzyme within the endoplasmic reticulum.
Length = 176
Score = 40.9 bits (96), Expect = 0.002
Identities = 31/87 (35%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 302 GQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDN----GNCTPSA 357
G C H + + + D DC DGSDEP + C G F C N PS
Sbjct: 36 GNWKCLNHSEIKLSFDQVNDDYCDCPDGSDEPGT---NACSNGKFYCANEGFIPGYIPSF 92
Query: 358 SICDGV---DDCRDGSDEK--HCDLPC 379
+ DGV D C DGSDE C C
Sbjct: 93 KVDDGVCDYDICCDGSDEALGKCPNKC 119
Score = 31.3 bits (71), Expect = 2.1
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 365 DCRDGSDEKHCDLPCPDLEFKCASNG-------RCILNSWKCDGEPDCKDGSDEDPAMCH 417
DC DGSDE + C + +F CA+ G ++ CD + C DGSDE C
Sbjct: 59 DCPDGSDEPGTN-ACSNGKFYCANEGFIPGYIPSFKVDDGVCDYDI-CCDGSDEALGKCP 116
Query: 418 NRPCDKDTEF 427
N+ + +F
Sbjct: 117 NKCGEIARQF 126
Score = 31.3 bits (71), Expect = 2.4
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Query: 446 DCGDDSDEPAYMCRQRNCTKGWERCPGK---TNYRCIPKWLFCDG---KDDCRDGSDELP 499
DC D SDEP C+ G C + Y IP + DG D C DGSDE
Sbjct: 59 DCPDGSDEPG----TNACSNGKFYCANEGFIPGY--IPSFKVDDGVCDYDICCDGSDEAL 112
Query: 500 QNCP-KCHE 507
CP KC E
Sbjct: 113 GKCPNKCGE 121
Score = 30.5 bits (69), Expect = 5.1
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 657 DCGDNSDET-SSLCSN-----MNCTSLHKCIPKWLFCDG---KDDCRDGSDELPQNCP-K 706
DC D SDE ++ CSN N + IP + DG D C DGSDE CP K
Sbjct: 59 DCPDGSDEPGTNACSNGKFYCANEGFIPGYIPSFKVDDGVCDYDICCDGSDEALGKCPNK 118
Query: 707 CHE 709
C E
Sbjct: 119 CGE 121
Score = 29.8 bits (67), Expect = 8.4
Identities = 24/55 (43%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 573 DCTDGSDEMECGGFQCKNGTFQCSSGHCIAAY---FR-----CDGDRDCRDLSDE 619
DC DGSDE G C NG F C++ I Y F+ CD D C D SDE
Sbjct: 59 DCPDGSDEP--GTNACSNGKFYCANEGFIPGYIPSFKVDDGVCDYDI-CCDGSDE 110
Score = 29.4 bits (66), Expect = 9.5
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 612 DCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLC---VEQSELCDG---TDDCGDNSDET 665
DC D SDE PG C KF CA+ + ++ DG D C D SDE
Sbjct: 59 DCPDGSDE-------PGTNACSNGKFYCANEGFIPGYIPSFKVDDGVCDYDICCDGSDEA 111
Query: 666 SSLCSN 671
C N
Sbjct: 112 LGKCPN 117
Score = 29.4 bits (66), Expect = 9.5
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 13/66 (19%)
Query: 889 DCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLC---VEQSELCDG---TDDCGDNSDET 942
DC D SDE PG C KF CA+ + ++ DG D C D SDE
Sbjct: 59 DCPDGSDE-------PGTNACSNGKFYCANEGFIPGYIPSFKVDDGVCDYDICCDGSDEA 111
Query: 943 SSLCSN 948
C N
Sbjct: 112 LGKCPN 117
>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain.
Length = 42
Score = 36.2 bits (84), Expect = 0.004
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1355 DVDECATGIHHCSQ--VCTNLNGTYACSCNAGFTLSDG 1390
DVDECA G H+C VC N G++ C C G+ ++
Sbjct: 1 DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNED 38
>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain.
Length = 39
Score = 33.4 bits (77), Expect = 0.046
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 1355 DVDECATGIHHCSQ--VCTNLNGTYACSCNAGFT 1386
D+DECA+G + C C N G+Y C C G+T
Sbjct: 1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYT 33
Score = 32.6 bits (75), Expect = 0.073
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 1076 NVDECAKVETNQCGHKCVDTLTGYYCECNTGY 1107
++DECA Q G CV+T+ Y CEC GY
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGY 32
>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large
number of membrane-bound and extracellular (mostly
animal) proteins. Many of these proteins require calcium
for their biological function and calcium-binding sites
have been found to be located at the N-terminus of
particular EGF-like domains; calcium-binding may be
crucial for numerous protein-protein interactions. Six
conserved core cysteines form three disulfide bridges as
in non calcium-binding EGF domains, whose structures are
very similar. EGF_CA can be found in tandem repeat
arrangements.
Length = 38
Score = 33.0 bits (76), Expect = 0.055
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 1076 NVDECAKVETNQCGHKCVDTLTGYYCECNTGY 1107
++DECA Q G CV+T+ Y C C GY
Sbjct: 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGY 32
Score = 32.6 bits (75), Expect = 0.073
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 1355 DVDECATGIHHCS--QVCTNLNGTYACSCNAGFTL 1387
D+DECA+G + C C N G+Y CSC G+T
Sbjct: 1 DIDECASG-NPCQNGGTCVNTVGSYRCSCPPGYTG 34
>gnl|CDD|205157 pfam12947, EGF_3, EGF domain. This family includes a variety of
EGF-like domain homologues. This family includes the
C-terminal domain of the malaria parasite MSP1 protein.
Length = 36
Score = 32.1 bits (74), Expect = 0.11
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 1359 CATGIHHCSQ--VCTNLNGTYACSCNAGFT 1386
CA C CTN G++ C+C +G+T
Sbjct: 1 CAENNGGCHPNATCTNTGGSFTCTCKSGYT 30
>gnl|CDD|214544 smart00181, EGF, Epidermal growth factor-like domain.
Length = 35
Score = 27.5 bits (61), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1358 ECATGIHHCSQ-VCTNLNGTYACSCNAGFTLS 1388
ECA+G CS C N G+Y CSC G+T
Sbjct: 1 ECASG-GPCSNGTCINTPGSYTCSCPPGYTGD 31
>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like. cEGF, or complement
Clr-like EGF, domains have six conserved cysteine
residues disulfide-bonded into the characteristic pattern
'ababcc'. They are found in blood coagulation proteins
such as fibrillin, Clr and Cls, thrombomodulin, and the
LDL receptor. The core fold of the EGF domain consists of
two small beta-hairpins packed against each other. Two
major structural variants have been identified based on
the structural context of the C-terminal cysteine residue
of disulfide 'c' in the C-terminal hairpin: hEGFs and
cEGFs. In cEGFs the C-terminal thiol resides on the
C-terminal beta-sheet, resulting in long loop-lengths
between the cysteine residues of disulfide 'c', typically
C[10+]XC. These longer loop-lengths may have arisen by
selective cysteine loss from a four-disulfide EGF
template such as laminin or integrin. Tandem cEGF domains
have five linking residues between terminal cysteines of
adjacent domains. cEGF domains may or may not bind
calcium in the linker region. cEGF domains with the
consensus motif CXN4X[F,Y]XCXC are hydroxylated
exclusively on the asparagine residue.
Length = 24
Score = 26.6 bits (60), Expect = 6.8
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDE 1358
Y C+C G+ + + + C D+DE
Sbjct: 1 SYTCSCPPGYQLSGDG-RTCEDIDE 24
>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase.
Length = 897
Score = 30.6 bits (69), Expect = 9.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 1387 LSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKR 1420
LS GL + ND + I ++ GP + A+ H
Sbjct: 790 LSRGLPNIHHVNDTSMVISFTRGPLLFAFNFHPT 823
>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal
growth factor (EGF) presents in a large number of
proteins, mostly animal; the list of proteins currently
known to contain one or more copies of an EGF-like
pattern is large and varied; the functional significance
of EGF-like domains in what appear to be unrelated
proteins is not yet clear; a common feature is that these
repeats are found in the extracellular domain of
membrane-bound proteins or in proteins known to be
secreted (exception: prostaglandin G/H synthase); the
domain includes six cysteine residues which have been
shown to be involved in disulfide bonds; the main
structure is a two-stranded beta-sheet followed by a loop
to a C-terminal short two-stranded sheet; Subdomains
between the conserved cysteines vary in length; the
region between the 5th and 6th cysteine contains two
conserved glycines of which at least one is present
in most EGF-like domains; a subset of these bind
calcium.
Length = 36
Score = 26.7 bits (59), Expect = 9.5
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 1079 ECAKVETNQC--GHKCVDTLTGYYCECNTGY 1107
ECA +N C G CV+T Y C C GY
Sbjct: 1 ECA--ASNPCSNGGTCVNTPGSYRCVCPPGY 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.468
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 76,118,273
Number of extensions: 7150174
Number of successful extensions: 4674
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4643
Number of HSP's successfully gapped: 141
Length of query: 1576
Length of database: 10,937,602
Length adjustment: 110
Effective length of query: 1466
Effective length of database: 6,058,662
Effective search space: 8881998492
Effective search space used: 8881998492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (29.5 bits)