RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy948
(1576 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta
propeller, cholesterol clearance, PCSK autocatalytic
cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 336 bits (861), Expect = 9e-99
Identities = 184/750 (24%), Positives = 300/750 (40%), Gaps = 96/750 (12%)
Query: 685 LFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLC 744
L + C +FQC++ +CI +W+CD +C D SDE+++ C
Sbjct: 5 LRWTVALLLAAAGTAVGDRCE----RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 60
Query: 745 AGAYRQCSESEFQCKN--GKCIPAQWRCDHDEDCTDGSDEMECGGFQC-----KCVTMTR 797
C +F C +CIP WRCD DC +GSDE C C +C
Sbjct: 61 L--SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKC 118
Query: 798 IVQMEVMKWNAAASNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGD 857
I + + CD D DC DGSDE C C +FQC+S CI + CD D
Sbjct: 119 I-----------SRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDND 167
Query: 858 RDCRDLSE-------------------LNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMN 898
DC D S+ F C SG CI + +RCDG DC+D SDE N
Sbjct: 168 PDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN 227
Query: 899 CPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQ 958
C C +FQC+ + C+ S CD DC D SDE + + C +K++
Sbjct: 228 CAVAT-----CRPDEFQCSDGN-CIHGSRQCDREYDCKDMSDEVGCVNVTL-CEGPNKFK 280
Query: 959 CDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPC---------ELYSQYTCSNH 1009
C +G CI ++C+ +C D SDE T ++ + C +
Sbjct: 281 CHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDG 340
Query: 1010 KCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDS 1069
+ C +D+C D + + +C G +D H K
Sbjct: 341 FQLVAQRRCEDIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQLDPH---TKACKAVGSI 395
Query: 1070 DEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSNKVLTRSTVI 1129
N E K+ ++ + + +T + S S +++ + +
Sbjct: 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV-ASNRIYWSDLSQRMICSTQLD 454
Query: 1130 YHVRIWSSNVLVMADVYSTRGSVMENRTVKMEVTKIPLCALDVRSIKLDVAELDGTNRKT 1189
+ S + ++ D+ + G ++ + T D + VA+ G RKT
Sbjct: 455 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT-------DSVLGTVSVADTKGVKRKT 507
Query: 1190 L-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 1248
L + PR I + P G++Y++ W A I K G++G + ++T ++I WPN +TL
Sbjct: 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITL 565
Query: 1249 DYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDHIYWTDWNTKSI 1307
D + RLYW D+ L I+S+D++G ++ ++ +++ H F+L +FED ++WTD ++I
Sbjct: 566 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 625
Query: 1308 NRADKFNA--REIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHH 1365
A++ + A L ++ C +
Sbjct: 626 FSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVN---------WC---ERTTLSNGG 673
Query: 1366 CSQVC------TNLNGTYACSCNAGFTLSD 1389
C +C + + C+C G L+
Sbjct: 674 CQYLCLPAPQINPHSPKFTCACPDGMLLAR 703
Score = 259 bits (663), Expect = 8e-73
Identities = 129/478 (26%), Positives = 190/478 (39%), Gaps = 45/478 (9%)
Query: 360 CDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNR 419
+ C EF+C +G+CI W CDG +C+DGSDE C +
Sbjct: 5 LRWTVALLLAAAGTAVGDRCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSV 63
Query: 420 PCDKDTEFACRN--GHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYR 477
C +F+C CIP+ W CD DC + SDE C + C++ RC + +
Sbjct: 64 TCKSG-DFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGCPPKTCSQDEFRCH---DGK 117
Query: 478 CIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDE 537
CI + CD DC DGSDE C FQC ++ CIP+ W CD + DC D SDE
Sbjct: 118 CISRQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDE 176
Query: 538 AEDLCAGAY------RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNG 591
C G Y CS EF C +G+CI + WRCD DC D SDE C C+
Sbjct: 177 WPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPD 236
Query: 592 TFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSEL 651
FQCS G+CI +CD + DC+D+SDE+ C KF+C S C+ ++
Sbjct: 237 EFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV---NVTLCEGPNKFKCHSGE-CITLDKV 292
Query: 652 CDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETT 711
C+ DC D SDE C ++C D + C
Sbjct: 293 CNMARDCRDWSDEPIKECGT-------------------NECLDNNGGCSHVCNDLKIGY 333
Query: 712 DFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCD 771
+ C + + + C+ ++C D + QC+ G + +
Sbjct: 334 ECLCPDGFQLVAQRRCEDIDECQDPDTC----SQLCVNLEGGYKCQCEEGFQLDPHTKAC 389
Query: 772 HDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNWRCDHDEDCTDGSDETE 829
+ + + +T+ R ++ + + SD ++
Sbjct: 390 KAVG--SIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ 445
Score = 227 bits (580), Expect = 5e-62
Identities = 111/361 (30%), Positives = 145/361 (40%), Gaps = 29/361 (8%)
Query: 298 NCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSA 357
C G CGG +CIP FW+CDG+ DC +GSDE CP + C F+C +G C
Sbjct: 64 TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE-QGCPPKTCSQDEFRCHDGKCISRQ 122
Query: 358 SICDGVDDCRDGSDEKHCD-LPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMC 416
+CD DC DGSDE C L C F+C ++ CI W CD +PDC+DGSDE P C
Sbjct: 123 FVCDSDRDCLDGSDEASCPVLTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRC 181
Query: 417 HNRPCDK-------DTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWER 469
+ EF C +G CI W CD DC D SDE C C +
Sbjct: 182 RGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQ 239
Query: 470 CPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC-PKCHETTDFQCKNNRCIPKRWMCDFE 528
C + CI CD + DC+D SDE+ C F+C + CI +C+
Sbjct: 240 CS---DGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMA 296
Query: 529 NDCGDQSDEAEDLCAGAYRQCSES-------------EFQCKNGKCIPAQWRCDHDEDCT 575
DC D SDE C + E C +G + AQ RC+ ++C
Sbjct: 297 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 356
Query: 576 DGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEY 635
D + QC G + + + N EY
Sbjct: 357 DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEY 416
Query: 636 K 636
Sbjct: 417 T 417
Score = 207 bits (528), Expect = 2e-55
Identities = 124/510 (24%), Positives = 164/510 (32%), Gaps = 92/510 (18%)
Query: 99 GWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFN 158
GW C EF CQ+ KCI + CDG +C D SDE
Sbjct: 2 GWKLR----WTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ 57
Query: 159 CRDGSDEGKECHDKYRTCSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNCSRDYRV 216
S TC S +F+C +CI + + CDG+ DC + SDE C
Sbjct: 58 ETCLS----------VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCP----- 102
Query: 217 LRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGC-SHLCLLSPVPGVDRAPDMYADARSPV 275
P C D C C+
Sbjct: 103 ----------------------PKTCSQDEFRCHDGKCI-------------------SR 121
Query: 276 SYTCACPNQFYLDPRDNKTC-VANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE-- 332
+ C LD D +C V C C + CIP W CD + DC DGSDE
Sbjct: 122 QFVCDSDRD-CLDGSDEASCPVLTCGPASFQC--NSSTCIPQLWACDNDPDCEDGSDEWP 178
Query: 333 -------PMSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLP-CPDLEF 384
+ C A F C +G C S+ CDG DC+D SDE++C + C EF
Sbjct: 179 QRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEF 238
Query: 385 KCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFD 444
+C S+G CI S +CD E DCKD SDE + + +F C +G CI VC+
Sbjct: 239 QC-SDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPN-KFKCHSGECITLDKVCNMA 296
Query: 445 NDCGDDSDEPAYMCRQRNCTKGWERCPGK------------TNYRCIPKWLFCDGKDDCR 492
DC D SDEP C C C + + C+ D+C+
Sbjct: 297 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ 356
Query: 493 DGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSES 552
D Q C QC+ +
Sbjct: 357 DPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSE 415
Query: 553 EFQCKNGKCIPAQWRCDHDEDCTDGSDEME 582
+ + SD +
Sbjct: 416 YTSLIPNLRNVVALDTEVASNRIYWSDLSQ 445
Score = 123 bits (308), Expect = 2e-28
Identities = 78/387 (20%), Positives = 116/387 (29%), Gaps = 76/387 (19%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 157
+ ++CD D DC DGSD E TC F C + CI + + CD + DC D SDE+
Sbjct: 121 RQFVCDSDRDCLDGSD---EASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 177
Query: 158 NCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVL 217
R + CS+ EF C + +CI ++ CDG DC D+SDE NC+
Sbjct: 178 PQRCRGLYVFQGDS--SPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCR- 234
Query: 218 RNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSY 277
P+ +G C S
Sbjct: 235 ---------------------PDEFQCSDGNC-----------------------IHGSR 250
Query: 278 TCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCP 337
C + +G + H +CI C+ RDC D SDEP+
Sbjct: 251 QCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE- 309
Query: 338 ARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSW 397
C +NG C+ C D C +G ++
Sbjct: 310 ---CGTNECLDNNGGCSH---------VCNDLKIGYEC----------LCPDGFQLVAQR 347
Query: 398 KCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYM 457
+C+ +C+D + K C G +
Sbjct: 348 RCEDIDECQDPDTCSQLCVNLEGGYK---CQCEEGFQLDPHTKACKAVGSIAYLFFTNRH 404
Query: 458 CRQRNCTKGWERCPGKTNYRCIPKWLF 484
++ E N R +
Sbjct: 405 EVRKMTLDRSEYTSLIPNLRNVVALDT 431
Score = 103 bits (257), Expect = 2e-22
Identities = 69/244 (28%), Positives = 100/244 (40%), Gaps = 14/244 (5%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
+ GY C C GF + ++C D+DEC CSQ+C NL G Y C C
Sbjct: 322 CSHVCNDLKIGYECLCPDGFQLVAQ--RRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEE 378
Query: 1384 GFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEI 1443
GF L ++N E+R + + +I + R + ALD +
Sbjct: 379 GFQLDPHTKACKAVGSIAYLF-FTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 437
Query: 1444 IYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRS 1503
IYW D R I + + + + I +AVDWI NIYWT S
Sbjct: 438 IYWSDLSQRMICSTQL----DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL- 492
Query: 1504 GSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGS 1563
G V VA G R++L EN P +I +DP G M+W + G +I+ ++G
Sbjct: 493 -----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547
Query: 1564 HRSA 1567
+
Sbjct: 548 DIYS 551
Score = 68.3 bits (166), Expect = 2e-11
Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 6/207 (2%)
Query: 97 QKGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 156
CD + DC D SDE C + +F C + +CI C+ DC D SDE
Sbjct: 247 HGSRQCDREYDCKDMSDE-VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 305
Query: 157 FNCRDGSDEGKEC-----HDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
G++E + H E C + + C+ D+C D
Sbjct: 306 PIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLC 365
Query: 212 RDYRVLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADA 271
+ H A + + ++ +
Sbjct: 366 VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN 425
Query: 272 RSPVSYTCACPNQFYLDPRDNKTCVAN 298
+ A ++ D C
Sbjct: 426 VVALDTEVASNRIYWSDLSQRMICSTQ 452
Score = 66.0 bits (160), Expect = 8e-11
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 31 ERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK 90
A I K G++G + ++T ++I WPN +TLD + RLYW D+ L I+S+D++G ++
Sbjct: 535 TPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592
Query: 91 HIVISGQK 98
++ +K
Sbjct: 593 KTILEDEK 600
Score = 61.0 bits (147), Expect = 2e-09
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 15/93 (16%)
Query: 211 SRDYRVLRNTTHRPYDIHVYHPLKQLAYPNPC---DGDNGGCSHLCLLSPVPGVDRAPDM 267
D +L P D+ ++H L Q N C NGGC +LCL +P
Sbjct: 633 GSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQI-------- 684
Query: 268 YADARSPVSYTCACPNQFYLDPRDNKTCVANCT 300
+TCACP+ L D ++C+
Sbjct: 685 ---NPHSPKFTCACPDGMLLAR-DMRSCLTEAE 713
Score = 53.3 bits (127), Expect = 7e-07
Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 22/237 (9%)
Query: 1335 YLCTCYQGFIIDKNNAKKCLDVDECAT------GIHHCSQVCTNLNGTYACSCNAGFTLS 1388
Y C C +GF +D + + + + N +
Sbjct: 372 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDT 431
Query: 1389 DGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVD 1448
+ S +D ++ S + + + D + + L +D + IYW D
Sbjct: 432 EVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSNIYWTD 489
Query: 1449 SYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPK 1508
S + + + + L ++ K AI VD + +YWT
Sbjct: 490 SVLGTVSVADT--------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA---- 537
Query: 1509 GKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
K+ +G SLV+EN++ P+ I LD G+++W ++ I S ++G +R
Sbjct: 538 -KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH-SISSIDVNGGNR 592
Score = 39.0 bits (90), Expect = 0.013
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D NR Y++D++ + I +++ S++ +++ DI P+
Sbjct: 429 LDTEVASNRIYWSDLSQRMICSTQLDR-----------AHGVSSYDTVISR--DIQAPDG 475
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS 95
L +D+ +YW D+ L ++ D G + +
Sbjct: 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 510
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 254 bits (649), Expect = 1e-71
Identities = 126/449 (28%), Positives = 182/449 (40%), Gaps = 43/449 (9%)
Query: 378 PCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRN--GHCI 435
C EF+C +G+CI W CDG +C+DGSDE C + C +F+C CI
Sbjct: 5 RCERNEFQC-QDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSG-DFSCGGRVNRCI 62
Query: 436 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 495
P+ W CD DC + SDE C + C++ RC + +CI + CD DC DGS
Sbjct: 63 PQFWRCDGQVDCDNGSDE--QGCPPKTCSQDEFRCH---DGKCISRQFVCDSDRDCLDGS 117
Query: 496 DELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAY------RQC 549
DE C + FQC ++ CIP+ W CD + DC D SDE C G Y C
Sbjct: 118 DEASCPVLTCGPAS-FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPC 176
Query: 550 SESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDG 609
S EF C +G+CI + WRCD DC D SDE C C+ FQCS G+CI +CD
Sbjct: 177 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDR 236
Query: 610 DRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLC 669
+ DC+D+SDE+ C KF+C S C+ ++C+ DC D SDE C
Sbjct: 237 EYDCKDMSDEVGCV---NVTLCEGPNKFKCHSGE-CITLDKVCNMARDCRDWSDEPIKEC 292
Query: 670 SNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDF 729
C + C + C + + + C+
Sbjct: 293 GTNECLDNNGGC-------------------SHVCNDLKIGYECLCPDGFQLVAQRRCED 333
Query: 730 ENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQ 789
++C D ++ + QC+ G + + +
Sbjct: 334 IDECQDPDTCSQLCV----NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVR 389
Query: 790 CKCVTMTRIVQMEVMKWNAAASNWRCDHD 818
+ + + N A + +
Sbjct: 390 KMTLDRSEYTSLIPNLRNVVALDTEVASN 418
Score = 245 bits (627), Expect = 9e-69
Identities = 144/576 (25%), Positives = 211/576 (36%), Gaps = 67/576 (11%)
Query: 749 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNA 808
+C +EFQC++GKCI +W CD +C DGSDE + C +
Sbjct: 4 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGD--FSCGGRVNRC 61
Query: 809 AASNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELN- 867
WRCD DC +GSDE C C F+C G CI+ F CD DRDC D S+
Sbjct: 62 IPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS 121
Query: 868 --------GTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAST 919
+FQC+S CI + CD D DC D SDE
Sbjct: 122 CPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR------------------- 162
Query: 920 HLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGD 979
C + C + C +G CI S CDG +C D
Sbjct: 163 --CRGLYVFQGDSSPCSAFE-----------------FHCLSGECIHSSWRCDGGPDCKD 203
Query: 980 GSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENST 1039
SDE N + T ++ CS+ CI + C+ DC D+SDE+GC
Sbjct: 204 KSDEENCAVATCR--------PDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLC 255
Query: 1040 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 1099
++F+C++G+CI VCN DC D SDEP+ C H C D GY
Sbjct: 256 EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY 315
Query: 1100 YCECNTGYNDDDIGTVSPSSNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVK 1159
C C G+ N+ G ++ T
Sbjct: 316 ECLCPDGFQLVAQRRCEDIDECQDP-----DTCSQLCVNLEGGYKCQCEEGFQLDPHTKA 370
Query: 1160 MEVTKIPLCALDVRSIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAY 1219
+ ++ LD + +L +++ + +Y+S + +
Sbjct: 371 CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM- 429
Query: 1220 IGKIGMDGSNFTRILT--HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHI 1277
I +D ++ DI P+ L +D+ +YW D+ L ++ D G +
Sbjct: 430 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 489
Query: 1278 VISGQKV-PHVFALTLFEDHIYWTDWNTKS-INRAD 1311
+ Q P + +YWTDW T + I +
Sbjct: 490 LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525
Score = 233 bits (596), Expect = 9e-65
Identities = 126/467 (26%), Positives = 181/467 (38%), Gaps = 72/467 (15%)
Query: 418 NRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYR 477
C+++ EF C++G CI WVCD +C D SDE C C G C G+ N R
Sbjct: 3 GDRCERN-EFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVN-R 60
Query: 478 CIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDE 537
CIP++ CDG+ DC +GSDE C + +F+C + +CI ++++CD + DC D SDE
Sbjct: 61 CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQD-EFRCHDGKCISRQFVCDSDRDCLDGSDE 119
Query: 538 AEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG----------GFQ 587
+ C + FQC + CIP W CD+D DC DGSDE
Sbjct: 120 ----ASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP 175
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVE 647
C F C SG CI + +RCDG DC+D SDE NC C +FQC+
Sbjct: 176 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT-----CRPDEFQCSD------ 224
Query: 648 QSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELP-QNCPK 706
CI CD + DC+D SDE+ N
Sbjct: 225 ------------------------------GNCIHGSRQCDREYDCKDMSDEVGCVNVTL 254
Query: 707 CHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLC-------------AGAYRQCSE 753
C F+C + CI +C+ DC D SDE C
Sbjct: 255 CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIG 314
Query: 754 SEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNW 813
E C +G + AQ RC+ ++C D + ++ A
Sbjct: 315 YECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 374
Query: 814 RCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDC 860
T+ + + + + + + + +A +R
Sbjct: 375 GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY 421
Score = 196 bits (498), Expect = 3e-52
Identities = 123/488 (25%), Positives = 161/488 (32%), Gaps = 80/488 (16%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFA 182
C EF CQ+ KCI + CDG +C D SDE TC S +F+
Sbjct: 4 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ----------ETCLSVTCKSGDFS 53
Query: 183 CQNF--KCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRPYDIHVYHPLKQLAYPN 240
C +CI + + CDG+ DC + SDE C P
Sbjct: 54 CGGRVNRCIPQFWRCDGQVDCDNGSDEQGCP---------------------------PK 86
Query: 241 PCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTC-VANC 299
C D C +S D D C D D +C V C
Sbjct: 87 TCSQDEFRCHDGKCISRQFVCDSDRD--------------CL-----DGSDEASCPVLTC 127
Query: 300 TQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEP---------MSCPARQCRAGSFQCDN 350
C CIP W CD + DC DGSDE + C A F C +
Sbjct: 128 GPASFQCNSS--TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 185
Query: 351 GNCTPSASICDGVDDCRDGSDEKHCDLP-CPDLEFKCASNGRCILNSWKCDGEPDCKDGS 409
G C S+ CDG DC+D SDE++C + C EF+C S+G CI S +CD E DCKD S
Sbjct: 186 GECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQC-SDGNCIHGSRQCDREYDCKDMS 244
Query: 410 DEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWER 469
DE + + +F C +G CI VC+ DC D SDEP C C
Sbjct: 245 DEVGCVNVTLCEGPN-KFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG 303
Query: 470 CPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFEN 529
C N I C + C E D + C+ ++
Sbjct: 304 CSHVCNDLKIGYECLCPDGFQLVA-----QRRCEDIDECQDPDTCSQLCVNLEGG--YKC 356
Query: 530 DCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCK 589
C + A F + + +
Sbjct: 357 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA 416
Query: 590 NGTFQCSS 597
+ S
Sbjct: 417 SNRIYWSD 424
Score = 188 bits (477), Expect = 2e-49
Identities = 109/440 (24%), Positives = 156/440 (35%), Gaps = 76/440 (17%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF--KCIRKTYHCDGEDDCGDRSD 155
W+CD +C DGSDE + TC S +F+C +CI + + CDG+ DC + SD
Sbjct: 21 YKWVCDGSAECQDGSDE-SQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSD 79
Query: 156 EFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYR 215
E C +TCS +EF C + KCI + + CD + DC D SDE +C
Sbjct: 80 EQGCP------------PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP---- 123
Query: 216 VLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPV 275
+ + CD D D
Sbjct: 124 ----VLTCGPASFQCNSSTCIPQLWACDNDPD--------------------CEDGSDEW 159
Query: 276 SYTCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMS 335
C F D C+ + HC + CI W+CDG DC D SDE +
Sbjct: 160 PQRCRGLYVFQGDSS-------PCSAFEFHCLSGE--CIHSSWRCDGGPDCKDKSDE-EN 209
Query: 336 CPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCD---LPCPDLEFKCASNGRC 392
C CR FQC +GNC + CD DC+D SDE C L +FKC +G C
Sbjct: 210 CAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKC-HSGEC 268
Query: 393 ILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDT--------------EFACRNGHCIPKL 438
I C+ DC+D SDE C C + E C +G +
Sbjct: 269 ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 328
Query: 439 WVCDFDNDCGDDSDEPA-----YMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRD 493
C+ ++C D + C +G++ P + + + +
Sbjct: 329 RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEV 388
Query: 494 GSDELPQNCPKCHETTDFQC 513
L ++
Sbjct: 389 RKMTLDRSEYTSLIPNLRNV 408
Score = 96.8 bits (240), Expect = 2e-20
Identities = 72/244 (29%), Positives = 106/244 (43%), Gaps = 14/244 (5%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
+ GY C C GF + ++C D+DEC CSQ+C NL G Y C C
Sbjct: 304 CSHVCNDLKIGYECLCPDGFQLV--AQRRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEE 360
Query: 1384 GFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEI 1443
GF L D + CKA + + ++N E+R + + +I + R + ALD +
Sbjct: 361 GFQL-DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 419
Query: 1444 IYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRS 1503
IYW D R I + + + + I +AVDWI NIYWT S
Sbjct: 420 IYWSDLSQRMICSTQL----DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL- 474
Query: 1504 GSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGS 1563
G V VA G R++L E P +I +DP G M+W + G +I+ ++G
Sbjct: 475 -----GTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529
Query: 1564 HRSA 1567
+
Sbjct: 530 DIYS 533
Score = 90.2 bits (223), Expect = 3e-18
Identities = 57/269 (21%), Positives = 79/269 (29%), Gaps = 48/269 (17%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 157
W CD DC D SDE + TC +EF C + CI + CD E DC D SDE
Sbjct: 191 SSWRCDGGPDCKDKSDE---ENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEV 247
Query: 158 NCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVL 217
C + + +F C + +CI C+ DC D SDE
Sbjct: 248 GCVNVT----------LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECG---- 293
Query: 218 RNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSY 277
N C +NGGCSH+C + PD +
Sbjct: 294 ---------------------TNECLDNNGGCSHVCNDLKIGYECLCPDGF--------- 323
Query: 278 TCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCP 337
+ D + + + GG+ +C F + C
Sbjct: 324 -QLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFF 382
Query: 338 ARQCRAGSFQCDNGNCTPSASICDGVDDC 366
+ D T V
Sbjct: 383 TNRHEVRKMTLDRSEYTSLIPNLRNVVAL 411
Score = 74.5 bits (182), Expect = 2e-13
Identities = 33/207 (15%), Positives = 53/207 (25%), Gaps = 6/207 (2%)
Query: 97 QKGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 156
CD + DC D SDE C + +F C + +CI C+ DC D SDE
Sbjct: 229 HGSRQCDREYDCKDMSDE-VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 287
Query: 157 -----FNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
+ G H E C + + C+ D+C D
Sbjct: 288 PIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLC 347
Query: 212 RDYRVLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADA 271
+ H A + + ++ +
Sbjct: 348 VNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRN 407
Query: 272 RSPVSYTCACPNQFYLDPRDNKTCVAN 298
+ A ++ D C
Sbjct: 408 VVALDTEVASNRIYWSDLSQRMICSTQ 434
Score = 64.8 bits (157), Expect = 2e-10
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 31 ERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK 90
A I K G++G + ++T ++I WPN +TLD + RLYW D+ L I+S+D++G ++
Sbjct: 517 TPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 574
Query: 91 HIVISGQK 98
++ +K
Sbjct: 575 KTILEDEK 582
Score = 62.1 bits (150), Expect = 1e-09
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 15/93 (16%)
Query: 211 SRDYRVLRNTTHRPYDIHVYHPLKQLAYPNPCD---GDNGGCSHLCLLSPVPGVDRAPDM 267
D +L P D+ ++H L Q N C+ NGGC +LCL +P
Sbjct: 615 GSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSP--- 671
Query: 268 YADARSPVSYTCACPNQFYLDPRDNKTCVANCT 300
+TCACP+ L D ++C+
Sbjct: 672 --------KFTCACPDGMLLAR-DMRSCLTEAE 695
Score = 42.5 bits (99), Expect = 0.001
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 1037 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCG 1089
C ++F+C +GKCI Y VC+ ++C+D SDE + K CG
Sbjct: 3 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCG 55
Score = 38.2 bits (88), Expect = 0.024
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D NR Y++D++ + I +++ +Y I DI P+
Sbjct: 411 LDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------SRDIQAPDG 457
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ 97
L +D+ +YW D+ L ++ D G + + Q
Sbjct: 458 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQ 494
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 235 bits (600), Expect = 6e-66
Identities = 103/401 (25%), Positives = 180/401 (44%), Gaps = 30/401 (7%)
Query: 1179 VAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE 1237
V++LDG +R+ L + PR + L P G++Y++ W + I + MDGS T ++
Sbjct: 106 VSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-- 163
Query: 1238 DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHI 1297
++ N LT+DY RLYW D + I S ++ G ++ ++ +PH F LT ++D+I
Sbjct: 164 -NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD--LPHPFGLTQYQDYI 220
Query: 1298 YWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVD 1357
YWTDW+ +SI RA+K + + I+ ++ ++ + +
Sbjct: 221 YWTDWSRRSIERANKTSGQNRT--IIQGHLDYVMDI------------LVFHSSRQSGWN 266
Query: 1358 ECATGIHHCSQVCTNL-NGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYE 1416
ECA+ HCS +C + G + C C A ++L+ L S + E
Sbjct: 267 ECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDE 326
Query: 1417 THKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLG 1476
I R + A+D DP+D+ +YW+DS IR++ +Q V
Sbjct: 327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQN 386
Query: 1477 IKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIA 1536
++ + +++D + IYWT + V DGR ++ + P ++
Sbjct: 387 LE--IQPYDLSIDIYSRYIYWTCEAT------NVINVTRLDGRSVGVVLKGEQDRPRAVV 438
Query: 1537 LDPTLGKMFWAETGA-SPRIESAWMDGSHRSATQISNRQAP 1576
++P G M++ SP+IE A +DG+ R S P
Sbjct: 439 VNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKP 479
Score = 138 bits (348), Expect = 1e-33
Identities = 72/403 (17%), Positives = 130/403 (32%), Gaps = 50/403 (12%)
Query: 1018 CNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 1077
V S C N CS C + C D+
Sbjct: 253 DILVFHSSRQSGWNECASSNGHCSH---LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTT 309
Query: 1078 DECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSNKVL---TRSTVIYHVRI 1134
++ + + + P ++ +R +I +
Sbjct: 310 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369
Query: 1135 WSSNVLVMADVYSTRGSVMENRTVKMEVTKIPLCALDVRSIKL----------DVAELDG 1184
S V+ + + + ++D+ S + +V LDG
Sbjct: 370 DGSQGFT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG 420
Query: 1185 TNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAY-IGKIGMDGSNFTRILTHEDDIAW 1242
+ + K PR + ++P GY+YF++ ++ I + +DG+ + ++
Sbjct: 421 RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFF--SGLSK 478
Query: 1243 PNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW 1302
P AL LD +L+WAD+ L I S DL G ++ ++ + LT+FE+ +YW D
Sbjct: 479 PIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS-NILQPVGLTVFENWLYWIDK 537
Query: 1303 NTKSINRADKFN--AREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECA 1360
+ I + D R + +I Y+ ++N
Sbjct: 538 QQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDN----------- 586
Query: 1361 TGIHHCSQVCTNL-NGTYACSCNAGFTL-SDGLSGVCKANDNK 1401
CS +C +GT CSC L D LS C +
Sbjct: 587 ---GGCSHICLVKGDGTTRCSCPMHLVLLQDELS--CGGTKHH 624
Score = 113 bits (284), Expect = 9e-26
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 1404 IVYSNGPEIRAYETHKRRFRDVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461
+++S +IR I + + ALD D D IYW D + I R+FM
Sbjct: 9 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68
Query: 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
+ + + + +AVDW+ N+YW + ++ V+ DG++R
Sbjct: 69 SAL--------EHVVEFGLDYPEGMAVDWLGKNLYWADTGT------NRIEVSKLDGQHR 114
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRS 1566
+ LV ++L+SP ++ALDP G M+W E G P+I+ A MDGS R+
Sbjct: 115 QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159
Score = 101 bits (252), Expect = 7e-22
Identities = 66/431 (15%), Positives = 140/431 (32%), Gaps = 54/431 (12%)
Query: 1182 LDGTNRKTL--KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD 1239
L+ N T +++ + +Y++ +L+ I + M+GS ++
Sbjct: 22 LETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVE--FG 78
Query: 1240 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS-GQKVPHVFALTLFEDHIY 1298
+ +P + +D+ + LYWAD + I LDG+H+ +++ P AL E +Y
Sbjct: 79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMY 138
Query: 1299 WTDWNTKS-INRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVD 1357
WT+W K I+RA + ++ + G + + N + ++
Sbjct: 139 WTEWGGKPKIDRAAMDGSERTT--LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196
Query: 1358 -----ECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSG-----VCKANDNKLTIVYS 1407
A + H + + Y + + + + + + + +
Sbjct: 197 GLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILV 256
Query: 1408 NGPEIRAYE----------------THKRRFRDVISDERRIEALDIDPVDEIIYWVDSYD 1451
++ F + A + + + S
Sbjct: 257 FHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQK 316
Query: 1452 RNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKV 1511
I R + E Q + L I S+ + AI D + +YW D +
Sbjct: 317 SAINRMVIDEQQSPDII------LPIHSLRNVRAIDYDPLDKQLYW--IDSRQ----NMI 364
Query: 1512 MVAHNDGRYRRSLVSENLES------PSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
A DG ++V ++ S P +++D ++W + I +DG
Sbjct: 365 RKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATN-VINVTRLDGRSV 423
Query: 1566 SATQISNRQAP 1576
+ P
Sbjct: 424 GVVLKGEQDRP 434
Score = 83.3 bits (205), Expect = 3e-16
Identities = 52/330 (15%), Positives = 98/330 (29%), Gaps = 71/330 (21%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTH----EDDIA 56
+D+ + + Y+ D I +++ DGS ++ ++
Sbjct: 345 IDYDPLDKQLYWIDSRQNMIRKAQ---------------EDGSQGFTVVVSSVPSQNLEI 389
Query: 57 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH------------IVISGQKGWL--C 102
P L++D ++ +YW + I LDG+ +V++ +KG++
Sbjct: 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFT 449
Query: 103 DHDNDCG-------DGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSD 155
+ DG++ + + K + D + + SD
Sbjct: 450 NLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRL----GKLFWADSDLRRIESSD 505
Query: 156 EFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYR 215
G + + F+ Y D + ++ D +
Sbjct: 506 --------LSGANRIVLEDSNILQPVGLTVFE--NWLYWIDKQQQMIEKIDMTGREGRTK 555
Query: 216 VLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPV 275
V V Q +PC DNGGCSH+CL+
Sbjct: 556 VQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKG----------------DG 599
Query: 276 SYTCACPNQFYLDPRDNKTCVANCTQGQHH 305
+ C+CP L D +C HH
Sbjct: 600 TTRCSCPMHLVLLQ-DELSCGGTKHHHHHH 628
Score = 81.8 bits (201), Expect = 8e-16
Identities = 70/421 (16%), Positives = 127/421 (30%), Gaps = 89/421 (21%)
Query: 1167 LCALDVRSIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 1226
L D+ + ++ + + G NR+ + + P G+T
Sbjct: 180 LYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQ------------------------ 215
Query: 1227 GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPH 1286
+ + +YW D I + +I Q
Sbjct: 216 ------------------------YQDYIYWTDWSRRSIERANKTSGQNRTII--QGHLD 249
Query: 1287 VFALTLFEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIID 1346
L + WN + + H C+ + G ++C C + ++
Sbjct: 250 YVMDILVFHSSRQSGWNECASSNGHCS----------HLCLAVPVGG-FVCGCPAHYSLN 298
Query: 1347 KNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCK----ANDNKL 1402
+N + C + ++ L V D +L
Sbjct: 299 ADN-RTCSAPTTFLLFSQKSAINRMVIDEQ---QSPDIILPIHSLRNVRAIDYDPLDKQL 354
Query: 1403 TIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDP----VDEI---IYWVDSYDRNIR 1455
+ S IR + + V+ + L+I P +D IYW I
Sbjct: 355 YWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVIN 414
Query: 1456 RSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAH 1515
+ + + + A+ V+ +Y+T K+ A
Sbjct: 415 VTRL--------DGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERS----PKIERAA 462
Query: 1516 NDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQISNRQA 1575
DG R L L P ++ALD LGK+FWA++ RIES+ + G++R + SN
Sbjct: 463 LDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLR-RIESSDLSGANRIVLEDSNILQ 521
Query: 1576 P 1576
P
Sbjct: 522 P 522
Score = 77.5 bits (190), Expect = 2e-14
Identities = 65/332 (19%), Positives = 116/332 (34%), Gaps = 72/332 (21%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF +NR Y+ D++ KTI R+ M+GS ++ + +P
Sbjct: 42 LDFDVTDNRIYWTDISLKTISRAF---------------MNGSALEHVVE--FGLDYPEG 84
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG------------QKGWLCDHDNDC 108
+ +D+ + LYWAD + I LDG+H+ +++ +G++ +
Sbjct: 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG 144
Query: 109 --------GDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCR 160
DGS+ + + Y D + + + S+
Sbjct: 145 KPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRL----YWTDLDTNLIESSNM---- 195
Query: 161 DGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNT 220
G + D F ++ Y D +R+++ + + +++
Sbjct: 196 LGLNREVIADD-----LPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQ-NRTIIQGH 247
Query: 221 THRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCA 280
DI V+H +Q N C NG CSHLCL PV + C
Sbjct: 248 LDYVMDILVFHSSRQS-GWNECASSNGHCSHLCLAVPVG----------------GFVCG 290
Query: 281 CPNQFYLDPRDNKTCVANCTQGQHHCGGHDQK 312
CP + L+ DN+TC A T +
Sbjct: 291 CPAHYSLNA-DNRTCSAPTTFLLFSQKSAINR 321
Score = 65.6 bits (159), Expect = 1e-10
Identities = 36/216 (16%), Positives = 65/216 (30%), Gaps = 12/216 (5%)
Query: 31 ERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK 90
+ I + MDGS T ++ ++ N LT+DY RLYW D + I S ++ G ++
Sbjct: 144 GKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR 200
Query: 91 HIVISGQKG-WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDD 149
++ + D +D + ++ S QN I+ +
Sbjct: 201 EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTS-----GQNRTIIQGHLDYVMDIL 255
Query: 150 CGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFN 209
S + + + C F C
Sbjct: 256 VFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ 315
Query: 210 CSRDYRVLRNTTHRPYDIHVYHPLKQLAYPNPCDGD 245
S R++ + P + P+ L D D
Sbjct: 316 KSAINRMVIDEQQSPD---IILPIHSLRNVRAIDYD 348
Score = 47.9 bits (113), Expect = 3e-05
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 32 RAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 91
++ I ++ +D I+ + A+ D ++LYW D+ + I DG
Sbjct: 316 KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF 375
Query: 92 IVIS 95
V+
Sbjct: 376 TVVV 379
Score = 47.5 bits (112), Expect = 3e-05
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 32 RAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 91
RA I +I ++ +N + + +AL D R+YW D L I+ ++G
Sbjct: 14 RADIRRISLETNNNNVAIPLTG-VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE 72
Query: 92 IVIS 95
V+
Sbjct: 73 HVVE 76
Score = 40.2 bits (93), Expect = 0.005
Identities = 49/308 (15%), Positives = 91/308 (29%), Gaps = 59/308 (19%)
Query: 1255 LYWADAHLDYIASVDLDGKHKHIVI--SGQKVPHVFALTLFEDHIYWTDWNTKSINRADK 1312
L ++ I + L+ + ++ I +G K + ++ IYWTD + K+I+RA
Sbjct: 9 LLFSRRA--DIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF- 65
Query: 1313 FNAREIQAGILHHCMNITG-----GSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCS 1367
N ++ + G L + D + I
Sbjct: 66 MNGSALEHVVEFGLDYPEGMAVDWLGKNL------YWADTGTNR-----------IEVS- 107
Query: 1368 QVCTNLNGTYACSCNAGFTLSDGLSG-----VCKANDNKLTIVYSNGPEIRAYETHKRRF 1422
L+G + + L + A + P+I
Sbjct: 108 ----KLDGQHRQV-----LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER 158
Query: 1423 RDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGK 1482
++ + R L ID +YW D I S ML + + G+
Sbjct: 159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGL----- 213
Query: 1483 LTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLG 1542
IYWT R + A+ R+++ +L+ I + +
Sbjct: 214 ------TQYQDYIYWTDWSR------RSIERANKTSGQNRTIIQGHLDYVMDILVFHSSR 261
Query: 1543 KMFWAETG 1550
+ W E
Sbjct: 262 QSGWNECA 269
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller, signaling
protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 229 bits (585), Expect = 5e-64
Identities = 128/391 (32%), Positives = 190/391 (48%), Gaps = 34/391 (8%)
Query: 1179 VAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE 1237
V+ LDG+ RK L + PR I L P G++Y++ W I + GMDGS+ I+
Sbjct: 110 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-- 167
Query: 1238 DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHI 1297
+I WPN LTLDY ++LYWADA L++I +LDG ++ V+ G +PH FALTLFED +
Sbjct: 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDIL 226
Query: 1298 YWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVD 1357
YWTDW+T SI +K+ ++ I + I + ++ +
Sbjct: 227 YWTDWSTHSILACNKYTGEGLRE-IHSDIFSPMD------------IHAFSQQRQPNATN 273
Query: 1358 ECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYET 1417
C CS +C C + +G + ++ + ++R
Sbjct: 274 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL 333
Query: 1418 HKRRFRDV---ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQD 1474
F D+ + D R A+D DPV+ IYW D R IRRSF+ + Q
Sbjct: 334 DTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS--------QF 385
Query: 1475 LGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSS 1534
+ I IAVDW+A N+YWT + ++ V +G R+ L+SE+LE P +
Sbjct: 386 VVTAQIAHPDGIAVDWVARNLYWTDTGT------DRIEVTRLNGTMRKILISEDLEEPRA 439
Query: 1535 IALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
I LDP +G M+W + G P+IE A +DGS R
Sbjct: 440 IVLDPMVGYMYWTDWGEIPKIERAALDGSDR 470
Score = 153 bits (386), Expect = 2e-38
Identities = 77/371 (20%), Positives = 129/371 (34%), Gaps = 33/371 (8%)
Query: 1033 CHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKC 1092
S + Y C ++ +
Sbjct: 273 NPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRIS 332
Query: 1093 VDTLTGYYCECNTGYNDDDIG-TVSPSSNKVL---TRSTVIYHVRIWSSN--VLVMADVY 1146
+DT I P + I I S +V A +
Sbjct: 333 LDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIA 392
Query: 1147 STRGSVMENRTVKMEVTKIPLCALDVRSIKLDVAELDGTNRKTL-KTAIQDPRGITLHPG 1205
G ++ + T D + +++V L+GT RK L +++PR I L P
Sbjct: 393 HPDGIAVDWVARNLYWT-------DTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPM 445
Query: 1206 IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI 1265
+GY+Y++ W I + +DGS+ ++ + WPN L LDY ++YW DA D I
Sbjct: 446 VGYMYWTDWGEIPKIERAALDGSDRVVLVN--TSLGWPNGLALDYDEGKIYWGDAKTDKI 503
Query: 1266 ASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNAREIQAGILHH 1325
++ DG + +++ + +PH+F TL D++YWTDW +SI R K +A
Sbjct: 504 EVMNTDGTGRRVLVEDK-IPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLP 562
Query: 1326 CMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGF 1385
+ + ++N CS +C C+C GF
Sbjct: 563 DLMGLKATNVHRVIGSNPCAEENG---------------GCSHLCLYRPQGLRCACPIGF 607
Query: 1386 TL-SDGLSGVC 1395
L SD + +
Sbjct: 608 ELISDMKTCIV 618
Score = 117 bits (295), Expect = 3e-27
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 1395 CKANDNKLTIVYSNGPEIRAY--ETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDR 1452
+ + ++Y+N ++R K V+ A+D +IYW D +
Sbjct: 3 HHHHHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE 62
Query: 1453 NIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVM 1512
I+R+ + + Q + + + +A DW+ +YWT S+ ++
Sbjct: 63 AIKRTEFNKTESVQN-------VVVSGLLSPDGLACDWLGEKLYWTDSET------NRIE 109
Query: 1513 VAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
V++ DG R+ L + L+ P +IALDP+ G M+W + G P+IE A MDGS R
Sbjct: 110 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162
Score = 86.4 bits (213), Expect = 3e-17
Identities = 63/316 (19%), Positives = 98/316 (31%), Gaps = 72/316 (22%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D+ E Y+ D + I RS +DGS ++T IA P+
Sbjct: 354 IDYDPVEGYIYWTDDEVRAIRRSF---------------IDGSGSQFVVT--AQIAHPDG 396
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG------------QKGWL--CDHDN 106
+ +D+ LYW D D I L+G + I+IS G++ D
Sbjct: 397 IAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE 456
Query: 107 DC------GDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCR 160
DGSD + + K Y D + D + +
Sbjct: 457 IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKI----YWGDAKTDKIEVMN----- 507
Query: 161 DGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNT 220
+G F Y D + +R + + R V+ +
Sbjct: 508 ---TDGTGRRVLVEDKIPHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAER--EVIIDQ 560
Query: 221 THRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCA 280
+ + + + + +NGGCSHLCL P CA
Sbjct: 561 LPDLMGLKATNVHRVIGSNPCAE-ENGGCSHLCLY-----------------RPQGLRCA 602
Query: 281 CPNQFYLDPRDNKTCV 296
CP F L D KTC+
Sbjct: 603 CPIGFELIS-DMKTCI 617
Score = 79.5 bits (195), Expect = 4e-15
Identities = 60/331 (18%), Positives = 103/331 (31%), Gaps = 51/331 (15%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF + Y++DV+ + I R+ + + + + + P+
Sbjct: 45 VDFVFSHGLIYWSDVSEEAIKRTE---------------FNKTESVQNVV-VSGLLSPDG 88
Query: 61 LTLDYFTERLYWADAHLDYIASVDLD------------GKHKHIVISGQKGWL--CDHDN 106
L D+ E+LYW D+ + I +LD + + I + G++ D
Sbjct: 89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE 148
Query: 107 DC------GDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCR 160
DGS + + + + K Y D + + +S+
Sbjct: 149 VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQK----LYWADAKLNFIHKSN----- 199
Query: 161 DGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNT 220
+G + FA F+ Y D +++ R + +
Sbjct: 200 ---LDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE-GLREIHSD 253
Query: 221 THRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCA 280
P DIH + +Q NPC DNGGCSHLCL+SPV + TC
Sbjct: 254 IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK 313
Query: 281 CPNQFYLDPRDNKTCVANCTQGQHHCGGHDQ 311
L Q
Sbjct: 314 DGATELLLLARRTDLRRISLDTPDFTDIVLQ 344
Score = 58.3 bits (140), Expect = 1e-08
Identities = 52/220 (23%), Positives = 78/220 (35%), Gaps = 15/220 (6%)
Query: 31 ERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK 90
E I + GMDGS+ I+ +I WPN LTLDY ++LYWADA L++I +LDG ++
Sbjct: 148 EVPKIERAGMDGSSRFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR 205
Query: 91 HIVISGQKGWL--CDHDND---CGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCD 145
V+ G D D S +KY E F + D
Sbjct: 206 QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSPM------D 259
Query: 146 GEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRS 205
R G D G H S + Q +G+ +
Sbjct: 260 IHAFSQQRQPNATNPCGIDNGGCSHL--CLMSPVKPFYQCACPTGVKLLENGKTCKDGAT 317
Query: 206 DEFNCSRDYRVLRNTTHRPYDIHVYHPLKQLAYPNPCDGD 245
+ +R + R + P + L+ + + D D
Sbjct: 318 ELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYD 357
Score = 43.7 bits (102), Expect = 5e-04
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 32 RAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 91
R + +I +D +FT I+ +DI A+ D +YW D + I +DG
Sbjct: 325 RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ 384
Query: 92 IVISGQKGW 100
V++ Q
Sbjct: 385 FVVTAQIAH 393
Score = 38.6 bits (89), Expect = 0.019
Identities = 7/57 (12%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1516 NDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQISN 1572
+G+ ++V LE +++ + G ++W++ I+ + + + +
Sbjct: 26 TNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVS-EEAIKRTEFNKTESVQNVVVS 81
Score = 37.5 bits (86), Expect = 0.039
Identities = 13/77 (16%), Positives = 30/77 (38%)
Query: 1255 LYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFN 1314
L +A+ + ++ IV+ G + IYW+D + ++I R +
Sbjct: 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 71
Query: 1315 AREIQAGILHHCMNITG 1331
+Q ++ ++ G
Sbjct: 72 TESVQNVVVSGLLSPDG 88
Score = 36.7 bits (84), Expect = 0.074
Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 32 RAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 91
R + + + + A+ + +YW+D + I + +
Sbjct: 17 RRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV 75
Query: 92 IVI 94
+
Sbjct: 76 QNV 78
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 168 bits (428), Expect = 7e-47
Identities = 46/146 (31%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
Query: 1176 KLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRI 1233
+++VA++DGT R+ L T + +PRGI P G +Y++ WN I MDG+N +
Sbjct: 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161
Query: 1234 LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF 1293
D++ PN LT D F+ +L W DA ++ + V+ G + + FA+T +
Sbjct: 162 AQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSY 217
Query: 1294 EDHIYWTDWNTKSINRADKFNAREIQ 1319
++Y+TDW T S+ D ++E+
Sbjct: 218 GKNLYYTDWKTNSVIAMDLAISKEMD 243
Score = 125 bits (316), Expect = 5e-32
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 21/180 (11%)
Query: 1404 IVYSNGPEIR------AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 1457
++++ +I + + I L D VD+++YW D + +I R+
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 1458 FMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHND 1517
+ + + + +G IA+D + I+WT S ++ VA D
Sbjct: 64 SLHGGEP--------TTIIRQDLGSPEGIALDHLGRTIFWTDSQL------DRIEVAKMD 109
Query: 1518 GRYRRSLVSENLESPSSIALDPTLGKMFWAETGA-SPRIESAWMDGSHRSATQISNRQAP 1576
G RR L L +P I DP G ++W + +P+IE++ MDG++R N P
Sbjct: 110 GTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLP 169
Score = 96.8 bits (241), Expect = 4e-22
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 1171 DVRSIKLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 1229
+ + L+ + T K + G+ VY++ + + IG+ + G
Sbjct: 11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS-IGRASLHGGE 69
Query: 1230 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS-GQKVPHVF 1288
T I+ D+ P + LD+ ++W D+ LD I +DG + ++ G P
Sbjct: 70 PTTIIR--QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI 127
Query: 1289 ALTLFEDHIYWTDWNTKS--INRAD 1311
++YWTDWN + I +
Sbjct: 128 VTDPVRGNLYWTDWNRDNPKIETSH 152
Score = 83.7 bits (207), Expect = 1e-17
Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 1425 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLT 1484
+ D E + +D + I+W DS I + M + L +
Sbjct: 74 IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM--------DGTQRRVLFDTGLVNPR 125
Query: 1485 AIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKM 1544
I D + N+YWT +R K+ +H DG RR L +NL P+ + D ++
Sbjct: 126 GIVTDPVRGNLYWTDWNRD----NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQL 181
Query: 1545 FWAETGASPRIESAWMDGSHR 1565
W + G + R E R
Sbjct: 182 CWVDAG-THRAECLNPAQPGR 201
Score = 83.0 bits (205), Expect = 2e-17
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 13 ADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 72
D +Y + + I MDG+N + D++ PN LT D F+ +L W
Sbjct: 129 TDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQ--DNLGLPNGLTFDAFSSQLCW 183
Query: 73 ADAHLDYIASVDLDGKHKHIVISG 96
DA ++ + V+ G
Sbjct: 184 VDAGTHRAECLNPAQPGRRKVLEG 207
Score = 74.5 bits (183), Expect = 2e-14
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 17/96 (17%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+ F + Y+ D++ +I R+ + G T I+ D+ P
Sbjct: 41 LAFDCVDKVVYWTDISEPSIGRAS---------------LHGGEPTTIIR--QDLGSPEG 83
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG 96
+ LD+ ++W D+ LD I +DG + ++
Sbjct: 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT 119
Score = 69.1 bits (169), Expect = 1e-12
Identities = 27/159 (16%), Positives = 61/159 (38%), Gaps = 12/159 (7%)
Query: 1139 VLVMADVYSTRGSVMENRTVKMEVTKIPLCALDVRSIKLDVAELDGTNRKTL-KTAIQDP 1197
VL + + RG V + + T + + K++ + +DGTNR+ L + + P
Sbjct: 115 VLFDTGLVNPRGIVTDPVRGNLYWTDW-----NRDNPKIETSHMDGTNRRILAQDNLGLP 169
Query: 1198 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 1257
G+T + + + ++L + +P A+T + + LY+
Sbjct: 170 NGLTFDAFSSQLCWVDAGTH-RAECLNPAQPGRRKVLE---GLQYPFAVTS--YGKNLYY 223
Query: 1258 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDH 1296
D + + ++DL + K ++ +T+
Sbjct: 224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262
Score = 57.2 bits (138), Expect = 1e-08
Identities = 46/304 (15%), Positives = 77/304 (25%), Gaps = 66/304 (21%)
Query: 1255 LYWADAHLDYIASVDLDGKH------KHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 1308
L +A I + L+ K + KV A + +YWTD + SI
Sbjct: 4 LLFAQTG--KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 1309 RADKFNAREIQAGILHHCMNITG-----GSGYLCTCYQGFIIDKNNAKKCLDVDECATGI 1363
RA + E I + G + F D + I
Sbjct: 62 RAS-LHGGEPTTIIRQDLGSPEGIALDHLGRTI------FWTDSQLDR-----------I 103
Query: 1364 HHCSQVCTNLNGTYACSCNAGFTLSDGLSG----VCKANDNKL--TIVYSNGPEI-RAYE 1416
++GT GL V L T + P+I ++
Sbjct: 104 EVA-----KMDGTQRRV-----LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153
Query: 1417 THKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLG 1476
R + L D + WVD+ A G+
Sbjct: 154 DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP---------AQPGRRKV 204
Query: 1477 IKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAH-NDGRYRRSLVSENLESPSSI 1535
++ + A+ N+Y+T D V+ + + I
Sbjct: 205 LEGLQYPFAVTSY--GKNLYYT--DWK----TNSVIAMDLAISKEMDTFHPHKQTRLYGI 256
Query: 1536 ALDP 1539
+
Sbjct: 257 TIAL 260
Score = 51.4 bits (123), Expect = 8e-07
Identities = 10/69 (14%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
Query: 32 RAYIGKIGMDGSNFTRILTH---EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK 88
I ++ ++ + + L D + +YW D I L G
Sbjct: 9 TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG 68
Query: 89 HKHIVISGQ 97
+I
Sbjct: 69 EPTTIIRQD 77
Score = 45.6 bits (108), Expect = 5e-05
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 21/100 (21%)
Query: 3 FHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALT 62
F ++ + D + ++L + +P A+T
Sbjct: 174 FDAFSSQLCWVDAGTHRAEC---------------LNPAQPGRRKVLE---GLQYPFAVT 215
Query: 63 LDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKGWL 101
+ + LY+ D + + ++DL K ++ L
Sbjct: 216 S--YGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 170 bits (431), Expect = 4e-46
Identities = 96/407 (23%), Positives = 140/407 (34%), Gaps = 70/407 (17%)
Query: 1028 SDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQ 1087
+ E C+ N C+ +C + C+ +D N ECA E
Sbjct: 1 TGEENCNVNNGGCAQ---KCQMIR-GAVQCTCHTGYRLTEDGRTCQDVN--ECA--EEGY 52
Query: 1088 CGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSNKVLTRSTVIYHVRIWSSNVLVMADVYS 1147
C C ++ + C C GY + +
Sbjct: 53 CSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLL 112
Query: 1148 TRGSVMENRTVKMEVTKIPLCALDVRSI-------------------------------- 1175
+ + + I
Sbjct: 113 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK 172
Query: 1176 ---------KLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM 1225
+++VA LDG +RK L +++ PR I LHP G +Y++ W I M
Sbjct: 173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232
Query: 1226 DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP 1285
DGS I + WPN LT+DY R+YW DA I +LDG H+ VIS +P
Sbjct: 233 DGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LP 289
Query: 1286 HVFALTLFEDHIYWTDWNTKSINRADKFNAREIQ--AGILHHCMNITGGSGYLCTCYQGF 1343
H FA+T+FED +YWTDW+TKSIN A+KF + + LH M+I +
Sbjct: 290 HPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNR 349
Query: 1344 IIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDG 1390
D N C+ +C Y C+C GF +
Sbjct: 350 CGDNN---------------GGCTHLCLPSGQNYTCACPTGFRKINS 381
Score = 136 bits (342), Expect = 2e-34
Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 19/243 (7%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
C I G CTC+ G+ + ++ + C DV+ECA +CSQ CTN G + C C A
Sbjct: 15 QKCQMIRGA--VQCTCHTGYRLTEDG-RTCQDVNECAEE-GYCSQGCTNSEGAFQCWCEA 70
Query: 1384 GFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEI 1443
G+ L CKA + ++++N +IR H+ + ++++ ALD E+
Sbjct: 71 GYEL-RPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRREL 129
Query: 1444 IYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRS 1503
++W D I R+ + + +++ + +AVDW+ +YWT S
Sbjct: 130 VFWSDVTLDRILRANLNGSNV--------EEVVSTGLESPGGLAVDWVHDKLYWTDSGT- 180
Query: 1504 GSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGS 1563
++ VA+ DG +R+ L+ ++LE P +IAL P G ++W + G +PRIE++ MDGS
Sbjct: 181 -----SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235
Query: 1564 HRS 1566
R
Sbjct: 236 GRR 238
Score = 72.1 bits (176), Expect = 4e-13
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 31 ERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK 90
I MDGS I + WPN LT+DY R+YW DA I +LDG H+
Sbjct: 223 NTPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 280
Query: 91 HIVISGQ 97
VIS
Sbjct: 281 KAVISQG 287
Score = 54.0 bits (129), Expect = 2e-07
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 19/86 (22%)
Query: 211 SRDYRVLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYAD 270
++ ++RN H P DIH HP +Q A N C +NGGC+HLCL
Sbjct: 319 GKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLP--------------- 363
Query: 271 ARSPVSYTCACPNQFYLDPRDNKTCV 296
S +YTCACP F ++ C
Sbjct: 364 --SGQNYTCACPTGFRKI--NSHACA 385
Score = 49.0 bits (116), Expect = 9e-06
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DFH++ +++DV I R+ ++GSN +++ + P
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRAN---------------LNGSNVEEVVST--GLESPGG 163
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS 95
L +D+ ++LYW D+ I +LDG H+ +++
Sbjct: 164 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW 198
Score = 39.8 bits (92), Expect = 0.006
Identities = 18/162 (11%), Positives = 34/162 (20%), Gaps = 18/162 (11%)
Query: 240 NPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVANC 299
C+ +NGGC+ C + + C C + L D +TC
Sbjct: 4 ENCNVNNGGCAQKCQM-----------------IRGAVQCTCHTGYRLTE-DGRTCQDVN 45
Query: 300 TQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSASI 359
+ ++C E D F
Sbjct: 46 ECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 360 CDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWKCDG 401
+ + + D + + +G
Sbjct: 106 SEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG 147
Score = 39.0 bits (90), Expect = 0.010
Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 20/154 (12%)
Query: 1425 VISDERRIEALDIDPVDEIIYWVDSYDRN-IRRSFMLEAQKGQVQAGFGQDLGIKS-IGK 1482
+ + A+ + P++ IYW D + I S M G G+ + + +
Sbjct: 197 LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM---------DGSGRRIIADTHLFW 247
Query: 1483 LTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLG 1542
+ +D+ +YW + + A+ DG +R++++S+ L P +I +
Sbjct: 248 PNGLTIDYAGRRMYWVDAKH------HVIERANLDGSHRKAVISQGLPHPFAITVFE--D 299
Query: 1543 KMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
++W + + I SA + P
Sbjct: 300 SLYWTDWH-TKSINSANKFTGKNQEIIRNKLHFP 332
Score = 34.4 bits (78), Expect = 0.30
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 20/123 (16%)
Query: 5 YKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 64
Y R Y+ D I R+ +DGS+ ++ + P A+T+
Sbjct: 255 YAGRRMYWVDAKHHVIERAN---------------LDGSHRKAVI--SQGLPHPFAITV- 296
Query: 65 YFTERLYWADAHLDYIASVD-LDGKHKHIVISGQKGWLCDHDNDCGDGSDEGKECHDKYR 123
F + LYW D H I S + GK++ I+ + + H C D
Sbjct: 297 -FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 355
Query: 124 TCS 126
C+
Sbjct: 356 GCT 358
Score = 30.9 bits (69), Expect = 3.4
Identities = 16/130 (12%), Positives = 30/130 (23%), Gaps = 12/130 (9%)
Query: 341 CRAGSFQCDNG-NCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRC------I 393
C + C A C R D + C +CA G C
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQD-----VNECAEEGYCSQGCTNS 60
Query: 394 LNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 453
+++C E + D +P + +++
Sbjct: 61 EGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 454 PAYMCRQRNC 463
+ R+
Sbjct: 121 LDFHHRRELV 130
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 158 bits (401), Expect = 6e-42
Identities = 75/410 (18%), Positives = 147/410 (35%), Gaps = 47/410 (11%)
Query: 1006 CSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRC-NNGKC------IDYHLV 1058
C ++ + +CN + + G C + C ++
Sbjct: 3 CLDNNGG-CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYK 61
Query: 1059 CNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPS 1118
C E + D V A + TL + N ++ +
Sbjct: 62 CQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTE 120
Query: 1119 SNKVLTRSTVIYHVRIWSSN-----------VLVMADVYSTRGSVMENRTVKMEVTKIPL 1167
+ + I S+ ++ D+ + G ++ + T
Sbjct: 121 VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT---- 176
Query: 1168 CALDVRSIKLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 1226
D + VA+ G RKTL + PR I + P G++Y++ W A I K G++
Sbjct: 177 ---DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233
Query: 1227 GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVP 1285
G + ++T ++I WPN +TLD + RLYW D+ L I+S+D++G ++ ++ +++
Sbjct: 234 GVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 291
Query: 1286 HVFALTLFEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFII 1345
H F+L +FED ++WTD ++I A++ ++ + +
Sbjct: 292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN-------LLAENLLSPEDMVLFHNLT 344
Query: 1346 DKNNAKKCLDVDECATGIHHCSQVC------TNLNGTYACSCNAGFTLSD 1389
C + C +C + + C+C G L+
Sbjct: 345 QPRGVNWC---ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR 391
Score = 134 bits (337), Expect = 1e-33
Identities = 75/243 (30%), Positives = 109/243 (44%), Gaps = 16/243 (6%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
H C ++ G Y C C GF + ++C D+DEC CSQ+C NL G Y C C
Sbjct: 12 HVCNDLKIG--YECLCPDGFQLVAQ--RRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEE 66
Query: 1384 GFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEI 1443
GF L D + CKA + + ++N E+R + + +I + R + ALD +
Sbjct: 67 GFQL-DPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNR 125
Query: 1444 IYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRS 1503
IYW D R I + + + + I +AVDWI NIYWT S
Sbjct: 126 IYWSDLSQRMICSTQL----DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVL- 180
Query: 1504 GSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGS 1563
G V VA G R++L EN P +I +DP G M+W + G +I+ ++G
Sbjct: 181 -----GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235
Query: 1564 HRS 1566
Sbjct: 236 DIY 238
Score = 76.8 bits (188), Expect = 1e-14
Identities = 52/247 (21%), Positives = 98/247 (39%), Gaps = 22/247 (8%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
C+N+ GG Y C C +GF +D + K C V A + + +
Sbjct: 51 QLCVNLEGG--YKCQCEEGFQLDPHT-KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 107
Query: 1384 GFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRD-----VISDERRIEALDID 1438
L + ++ + N++ + I + + + + D + + L +D
Sbjct: 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 167
Query: 1439 PVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWT 1498
+ IYW DS + + + + L ++ K AI VD + +YWT
Sbjct: 168 WIHSNIYWTDSVLGTVSVA--------DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219
Query: 1499 VSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIESA 1558
G+ K + +G SLV+EN++ P+ I LD G+++W ++ I S
Sbjct: 220 ---DWGTPAK--IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH-SISSI 273
Query: 1559 WMDGSHR 1565
++G +R
Sbjct: 274 DVNGGNR 280
Score = 73.0 bits (178), Expect = 2e-13
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 31 ERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK 90
A I K G++G + ++T ++I WPN +TLD + RLYW D+ L I+S+D++G ++
Sbjct: 223 TPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 280
Query: 91 HIVISGQKGW 100
++ +K
Sbjct: 281 KTILEDEKRL 290
Score = 59.1 bits (142), Expect = 5e-09
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 15/90 (16%)
Query: 211 SRDYRVLRNTTHRPYDIHVYHPLKQLAYPNPCD---GDNGGCSHLCLLSPVPGVDRAPDM 267
D +L P D+ ++H L Q N C+ NGGC +LCL +P
Sbjct: 321 GSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQIN------- 373
Query: 268 YADARSPVSYTCACPNQFYLDPRDNKTCVA 297
+TCACP+ L D ++C+
Sbjct: 374 ----PHSPKFTCACPDGMLLAR-DMRSCLT 398
Score = 43.3 bits (101), Expect = 5e-04
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+D NR Y++D++ + I +++ G + + DI P+
Sbjct: 117 LDTEVASNRIYWSDLSQRMICSTQLD------------RAHGVSSYDTV-ISRDIQAPDG 163
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS 95
L +D+ +YW D+ L ++ D G + +
Sbjct: 164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR 198
Score = 41.8 bits (97), Expect = 0.002
Identities = 23/162 (14%), Positives = 40/162 (24%), Gaps = 19/162 (11%)
Query: 240 NPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVANC 299
N C +NGGCSH+C + Y C CP+ F L + C
Sbjct: 1 NECLDNNGGCSHVCND-----------------LKIGYECLCPDGFQL--VAQRRCEDID 41
Query: 300 TQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSASI 359
+ +KC E F + +
Sbjct: 42 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDR 101
Query: 360 CDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWKCDG 401
+ + + D + + ++ S + D
Sbjct: 102 SEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143
Score = 39.8 bits (92), Expect = 0.006
Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 1425 VISDERRIEALDIDPVDEIIYWVDSYDRN-IRRSFMLEAQKGQVQAGFGQDLGIKSIGKL 1483
+ + A+ +DPV +YW D I++ + L ++I
Sbjct: 197 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--------YSLVTENIQWP 248
Query: 1484 TAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGK 1543
I +D ++ +YW S + +G R++++ + +L K
Sbjct: 249 NGITLDLLSGRLYWVDSKL------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 302
Query: 1544 MFWAETGASPRIESAWMDGSHRS 1566
+FW + + + GS +
Sbjct: 303 VFWTDIINEAIFSANRLTGSDVN 325
Score = 32.9 bits (74), Expect = 0.87
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 28 TEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD-YIASVDLD 86
T+ + G + ++ + P A+ +D +YW D I L+
Sbjct: 176 TDSVLGTVSVADTKGVKRKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233
Query: 87 GKHKHIVISGQKGW 100
G + +++ W
Sbjct: 234 GVDIYSLVTENIQW 247
Score = 32.1 bits (72), Expect = 1.4
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 18/93 (19%)
Query: 5 YKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 64
R Y+ D +I ++G N IL E +A P +L +
Sbjct: 255 LLSGRLYWVDSKLHSISSID---------------VNGGNRKTILEDEKRLAHPFSLAV- 298
Query: 65 YFTERLYWADAHLDYIASVD-LDGKHKHIVISG 96
F ++++W D + I S + L G +++
Sbjct: 299 -FEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 154 bits (389), Expect = 3e-41
Identities = 78/227 (34%), Positives = 110/227 (48%), Gaps = 26/227 (11%)
Query: 1179 VAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE 1237
V+ LDG+ RK L + PR I L P G++Y++ W I + GMDGS+ I+
Sbjct: 105 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-- 162
Query: 1238 DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHI 1297
+I WPN LTLDY ++LYWADA L++I +LDG ++ V+ G +PH FALTLFED +
Sbjct: 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDIL 221
Query: 1298 YWTDWNTKSINRADKFN--AREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLD 1355
YWTDW+T SI +K+ + M+I S N
Sbjct: 222 YWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG------ 275
Query: 1356 VDECATGIHHCSQVCTN--LNGTYACSCNAGFTLS-DGLSGVCKAND 1399
CS +C + Y C+C G L +G + CK +
Sbjct: 276 ---------GCSHLCLMSPVKPFYQCACPTGVKLLENGKT--CKDGN 311
Score = 114 bits (285), Expect = 2e-27
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 1404 IVYSNGPEIRAY--ETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 1461
++Y+N ++R K V+ A+D +IYW D + I+R+ +
Sbjct: 7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66
Query: 1462 AQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYR 1521
+ Q + + + +A DW+ +YWT S+ ++ V++ DG R
Sbjct: 67 TESVQN-------VVVSGLLSPDGLACDWLGEKLYWTDSET------NRIEVSNLDGSLR 113
Query: 1522 RSLVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHR 1565
+ L + L+ P +IALDP+ G M+W + G P+IE A MDGS R
Sbjct: 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 157
Score = 112 bits (282), Expect = 4e-27
Identities = 67/321 (20%), Positives = 113/321 (35%), Gaps = 59/321 (18%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DF + Y++DV+ + I R+ + + + + + P+
Sbjct: 40 VDFVFSHGLIYWSDVSEEAIKRTE---------------FNKTESVQNVV-VSGLLSPDG 83
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKGW----LCDHDNDCGDGSDEGK 116
L D+ E+LYW D+ + I +LDG + ++ + D + +D G+
Sbjct: 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE 143
Query: 117 ECHDKY--------RTCSSEEFACQNFKCI----RKTYHCDGEDDCGDRSDEFNCRDGSD 164
+ + E N + +K Y D + + +S+
Sbjct: 144 VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN--------L 195
Query: 165 EGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRP 224
+G + FA F+ Y D +++ R + + P
Sbjct: 196 DGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE-GLREIHSDIFSP 252
Query: 225 YDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQ 284
DIH + +Q NPC DNGGCSHLCL+SPV Y CACP
Sbjct: 253 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKP---------------FYQCACPTG 297
Query: 285 FYLDPRDNKTCVANCTQGQHH 305
L + KTC + HH
Sbjct: 298 VKLLE-NGKTCKDGNSHHHHH 317
Score = 78.2 bits (192), Expect = 2e-15
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 1171 DVRSIKLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF 1230
D+R + N + ++D + G +Y+S + +A I + + +
Sbjct: 14 DLRLVDAT---NGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKTES 69
Query: 1231 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS-GQKVPHVFA 1289
+ + + P+ L D+ E+LYW D+ + I +LDG + ++ P A
Sbjct: 70 VQNVV-VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIA 128
Query: 1290 LTLFEDHIYWTDWNTK-SINRADK 1312
L +YWTDW I RA
Sbjct: 129 LDPSSGFMYWTDWGEVPKIERAGM 152
Score = 70.9 bits (173), Expect = 5e-13
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 1425 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLT 1484
V+S + L D + E +YW DS I S + + L + + +
Sbjct: 74 VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS--------NLDGSLRKVLFWQELDQPR 125
Query: 1485 AIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKM 1544
AIA+D + +YWT K+ A DG R +++ + P+ + LD K+
Sbjct: 126 AIALDPSSGFMYWTDWGEVP-----KIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 1545 FWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
+WA+ + I + +DG++R A + P
Sbjct: 181 YWADAKLN-FIHKSNLDGTNRQAVVKGSLPHP 211
Score = 40.8 bits (95), Expect = 0.003
Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 32 RAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 91
R + + + + A+ + +YW+D + I + +
Sbjct: 12 RRDLRLVDATNGKENATIVV-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV 70
Query: 92 IVI 94
+
Sbjct: 71 QNV 73
Score = 40.1 bits (93), Expect = 0.005
Identities = 40/291 (13%), Positives = 88/291 (30%), Gaps = 52/291 (17%)
Query: 1255 LYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFN 1314
L +A+ + ++ IV+ G + IYW+D + ++I R +
Sbjct: 7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66
Query: 1315 AREIQAGILHHCMNITG-----GSGYL-CTCYQGFIIDKNNAKKCLDVDECAT----GIH 1364
+Q ++ ++ G L T + I+ +N LD +
Sbjct: 67 TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSN----LDGSLRKVLFWQELD 122
Query: 1365 HCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRD 1424
+ + + + + G +G ++ I+ S
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAG--MDGSSRFIIINSEIYWPN----------- 169
Query: 1425 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLT 1484
L +D ++ +YW D+ I +S + + V G S+
Sbjct: 170 ---------GLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--------SLPHPF 212
Query: 1485 AIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSI 1535
A+ + +YWT ++ + + ++ SP I
Sbjct: 213 ALTLF--EDILYWTDWST------HSILACNKYTGEGLREIHSDIFSPMDI 255
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid
transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Length = 316
Score = 152 bits (384), Expect = 1e-40
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 20/219 (9%)
Query: 1179 VAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE 1237
VA+ G RKTL + PR I + P G++Y++ W A I K G++G + ++T
Sbjct: 103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-- 160
Query: 1238 DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDH 1296
++I WPN +TLD + RLYW D+ L I+S+D++G ++ ++ +K + H F+L +FED
Sbjct: 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 220
Query: 1297 IYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDV 1356
++WTD ++I A++ ++ +L + + + N C
Sbjct: 221 VFWTDIINEAIFSANRLTGSDVN--LLAENLL---SPEDMVLFHNLTQPRGVNW--C--- 270
Query: 1357 DECATGIHHCSQVC------TNLNGTYACSCNAGFTLSD 1389
+ C +C + + C+C G L+
Sbjct: 271 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR 309
Score = 129 bits (326), Expect = 7e-33
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 10/173 (5%)
Query: 1404 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 1463
+ ++N E+R + + +I + R + ALD + IYW D R I + +
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL---- 59
Query: 1464 KGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRS 1523
+ + I +AVDWI NIYWT S G V VA G R++
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV------LGTVSVADTKGVKRKT 113
Query: 1524 LVSENLESPSSIALDPTLGKMFWAETGASPRIESAWMDGSHRSATQISNRQAP 1576
L EN P +I +DP G M+W + G +I+ ++G + N Q P
Sbjct: 114 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166
Score = 104 bits (261), Expect = 3e-24
Identities = 59/321 (18%), Positives = 108/321 (33%), Gaps = 65/321 (20%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFT--RILTHEDDIAWP 58
+D NR Y++D++ + I ++ +D ++ DI P
Sbjct: 35 LDTEVASNRIYWSDLSQRMICSTQ---------------LDRAHGVSSYDTVISRDIQAP 79
Query: 59 NALTLDYFTERLYWADAHLDYIASVDLDGKHKH------------IVISGQKGWL--CDH 104
+ L +D+ +YW D+ L ++ D G + IV+ G++ D
Sbjct: 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW 139
Query: 105 DNDCG------DGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFN 158
+G D + + + + + Y D + D
Sbjct: 140 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS----GRLYWVDSKLHSISSID--- 192
Query: 159 CRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLR 218
+G + D+ R A K + D ++ ++ S D +L
Sbjct: 193 -VNGGNRKTILEDEKRLAHPFSLAVFEDKV----FWTDIINEAIFSANRLTGS-DVNLLA 246
Query: 219 NTTHRPYDIHVYHPLKQLAYPNPCD---GDNGGCSHLCLLSPVPGVDRAPDMYADARSPV 275
P D+ ++H L Q N C+ NGGC +LCL +P
Sbjct: 247 ENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSP----------- 295
Query: 276 SYTCACPNQFYLDPRDNKTCV 296
+TCACP+ L D ++C+
Sbjct: 296 KFTCACPDGMLLAR-DMRSCL 315
Score = 82.8 bits (204), Expect = 5e-17
Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 5/134 (3%)
Query: 1182 LDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT--RILTHEDD 1239
LD + +L +++ + +Y+S + + I +D ++ D
Sbjct: 17 LDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM-ICSTQLDRAHGVSSYDTVISRD 75
Query: 1240 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS-GQKVPHVFALTLFEDHIY 1298
I P+ L +D+ +YW D+ L ++ D G + + P + +Y
Sbjct: 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 135
Query: 1299 WTDWNTKS-INRAD 1311
WTDW T + I +
Sbjct: 136 WTDWGTPAKIKKGG 149
Score = 70.1 bits (171), Expect = 1e-12
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 14/150 (9%)
Query: 1427 SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAI 1486
D + + L +D + IYW DS + + + + L ++ K AI
Sbjct: 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA--------DTKGVKRKTLFRENGSKPRAI 125
Query: 1487 AVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFW 1546
VD + +YWT K+ +G SLV+EN++ P+ I LD G+++W
Sbjct: 126 VVDPVHGFMYWTDWG-----TPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYW 180
Query: 1547 AETGASPRIESAWMDGSHRSATQISNRQAP 1576
++ I S ++G +R ++
Sbjct: 181 VDSK-LHSISSIDVNGGNRKTILEDEKRLA 209
Score = 46.6 bits (110), Expect = 3e-05
Identities = 41/293 (13%), Positives = 84/293 (28%), Gaps = 53/293 (18%)
Query: 1255 LYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFN 1314
L++ + H + + LD +I + + + IYW+D + + I
Sbjct: 4 LFFTNRH--EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICST---- 57
Query: 1315 AREIQAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGI------HHCSQ 1368
+ G + Y I A L VD + I
Sbjct: 58 -------------QLDRAHGV--SSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102
Query: 1369 VCTNLNGTYACSCNAGFTLSDGLSGVCK-ANDNKLTIVY----SNGPEI-RAYETHKRRF 1422
V + G + + S D +Y +I + +
Sbjct: 103 VA-DTKGVKRKT-----LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156
Query: 1423 RDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGK 1482
V + + + +D + +YWVDS +I + + + +
Sbjct: 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP----- 211
Query: 1483 LTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSI 1535
++ ++WT + A+ +L++ENL SP +
Sbjct: 212 ---FSLAVFEDKVFWTDIIN------EAIFSANRLTGSDVNLLAENLLSPEDM 255
Score = 44.7 bits (105), Expect = 1e-04
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 32 RAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK 90
R + K+ +D S +T ++ ++ AL + + R+YW+D I S LD H
Sbjct: 9 RHEVRKMTLDRSEYTSLIP---NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64
Score = 43.9 bits (103), Expect = 3e-04
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 1425 VISDERRIEALDIDPVDEIIYWVDSYDRN-IRRSFMLEAQKGQVQAGFGQDLGIKSIGKL 1483
+ + A+ +DPV +YW D I++ + L ++I
Sbjct: 115 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--------NGVDIYSLVTENIQWP 166
Query: 1484 TAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGK 1543
I +D ++ +YW S + +G R++++ + +L K
Sbjct: 167 NGITLDLLSGRLYWVDSKL------HSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK 220
Query: 1544 MFWAE 1548
+FW +
Sbjct: 221 VFWTD 225
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 151 bits (381), Expect = 7e-40
Identities = 93/356 (26%), Positives = 147/356 (41%), Gaps = 60/356 (16%)
Query: 1077 VDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSNK-----VLTRSTVIYH 1131
V+ECA E C C ++ + C C GY + R +
Sbjct: 1 VNECA--EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 1132 VRIWSSNVLVMAD---------------VYSTRGSVMENRTVKMEVTKIPLC-------- 1168
+ S L++ + V+ + ++ + + +
Sbjct: 59 LPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 118
Query: 1169 ---ALDVRSIKL----------DVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSW 1214
A+D KL +VA LDG +RK L +++ PR I LHP G +Y++ W
Sbjct: 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178
Query: 1215 NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 1274
I MDGS R + + + WPN LT+DY R+YW DA I +LDG H
Sbjct: 179 GNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH 236
Query: 1275 KHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGGSG 1334
+ VIS +PH FA+T+FED +YWTDW+TKSIN A+KF + + I+ + ++
Sbjct: 237 RKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQE--IIRNKLH------ 287
Query: 1335 YLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDG 1390
+ I + ++ + C C+ +C Y C+C GF +
Sbjct: 288 -----FPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINS 338
Score = 125 bits (314), Expect = 5e-31
Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 16/212 (7%)
Query: 1356 VDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAY 1415
V+ECA +CSQ CTN G + C C AG+ L CKA + ++++N +IR
Sbjct: 1 VNECAEE-GYCSQGCTNSEGAFQCWCEAGYEL-RPDRRSCKALGPEPVLLFANRIDIRQV 58
Query: 1416 ETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDL 1475
H+ + ++++ ALD E+++W D I R+ + + +++
Sbjct: 59 LPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV--------EEV 110
Query: 1476 GIKSIGKLTAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSI 1535
+ +AVDW+ +YWT S ++ VA+ DG +R+ L+ ++LE P +I
Sbjct: 111 VSTGLESPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLLWQSLEKPRAI 164
Query: 1536 ALDPTLGKMFWAETGASPRIESAWMDGSHRSA 1567
AL P G ++W + G +PRIE++ MDGS R
Sbjct: 165 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 196
Score = 82.6 bits (203), Expect = 1e-16
Identities = 64/312 (20%), Positives = 109/312 (34%), Gaps = 57/312 (18%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNA 60
+DFH++ +++DV I R+ ++GSN +++ + P
Sbjct: 78 LDFHHRRELVFWSDVTLDRILRAN---------------LNGSNVEEVVST--GLESPGG 120
Query: 61 LTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG------------QKGWLCDHD-ND 107
L +D+ ++LYW D+ I +LDG H+ +++ +G + D +
Sbjct: 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180
Query: 108 CGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGK 167
+ + + F D + N +G
Sbjct: 181 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL-----DGS 235
Query: 168 ECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRPYDI 227
FA F+ Y D + +++F + ++RN H P DI
Sbjct: 236 HRKAVISQGLPHPFAITVFE--DSLYWTDWHTKSINSANKFTGK-NQEIIRNKLHFPMDI 292
Query: 228 HVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYL 287
H HP +Q A N C +NGGC+HLCL S +YTCACP F
Sbjct: 293 HTLHPQRQPAGKNRCGDNNGGCTHLCLP-----------------SGQNYTCACPTGFRK 335
Query: 288 DPRDNKTCVANC 299
++ C
Sbjct: 336 I--NSHACALEV 345
Score = 34.1 bits (77), Expect = 0.36
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 19/59 (32%)
Query: 240 NPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVAN 298
N C + G CS C S ++ C C + L P D ++C A
Sbjct: 2 NECA-EEGYCSQGCTNSEG-----------------AFQCWCEAGYELRP-DRRSCKAL 41
Score = 30.6 bits (68), Expect = 4.1
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 32 RAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 91
R I ++ S +T +L + + AL + E ++W+D LD I +L+G +
Sbjct: 52 RIDIRQVLPHRSEYTLLLNN---LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108
Query: 92 IVISGQKGWLCDHDNDCGDG 111
V+S D
Sbjct: 109 EVVSTGLESPGGLAVDWVHD 128
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 109 bits (274), Expect = 1e-28
Identities = 37/76 (48%), Positives = 46/76 (60%)
Query: 547 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFR 606
+ CS++EF+C +GKCI Q+ CD D DC DGSDE C C +FQC+S CI +
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWA 60
Query: 607 CDGDRDCRDLSDEMNC 622
CD D DC D SDE
Sbjct: 61 CDNDPDCEDGSDEWPQ 76
Score = 96.6 bits (241), Expect = 4e-24
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 339 RQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLP-CPDLEFKCASNGRCILNSW 397
+ C F+C +G C +CD DC DGSDE C + C F+C ++ CI W
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQC-NSSTCIPQLW 59
Query: 398 KCDGEPDCKDGSDEDPAMC 416
CD +PDC+DGSDE P C
Sbjct: 60 ACDNDPDCEDGSDEWPQRC 78
Score = 93.5 bits (233), Expect = 5e-23
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 510 DFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCD 569
+F+C + +CI ++++CD + DC D SDEA C C + FQC + CIP W CD
Sbjct: 7 EFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CP--VLTCGPASFQCNSSTCIPQLWACD 62
Query: 570 HDEDCTDGSDEMEC 583
+D DC DGSDE
Sbjct: 63 NDPDCEDGSDEWPQ 76
Score = 93.5 bits (233), Expect = 5e-23
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 712 DFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCD 771
+F+C + +CI ++++CD + DC D SDEA C C + FQC + CIP W CD
Sbjct: 7 EFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CP--VLTCGPASFQCNSSTCIPQLWACD 62
Query: 772 HDEDCTDGSDEMEC 785
+D DC DGSDE
Sbjct: 63 NDPDCEDGSDEWPQ 76
Score = 92.3 bits (230), Expect = 1e-22
Identities = 36/77 (46%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSAS 358
C+Q + C D KCI + CD +RDC DGSDE SCP C SFQC++ C P
Sbjct: 3 CSQAEFRCH--DGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQLW 59
Query: 359 ICDGVDDCRDGSDEKHC 375
CD DC DGSDE
Sbjct: 60 ACDNDPDCEDGSDEWPQ 76
Score = 92.3 bits (230), Expect = 1e-22
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFA 182
+TCS EF C + KCI + + CD + DC D SDE +C TC F
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC------------PVLTCGPASFQ 48
Query: 183 CQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
C + CI + + CD + DC D SDE+
Sbjct: 49 CNSSTCIPQLWACDNDPDCEDGSDEWPQR 77
Score = 91.6 bits (228), Expect = 2e-22
Identities = 37/81 (45%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKL 438
C EF+C +G+CI + CD + DC DGSDE A C C F C + CIP+L
Sbjct: 3 CSQAEFRCH-DGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPA-SFQCNSSTCIPQL 58
Query: 439 WVCDFDNDCGDDSDEPAYMCR 459
W CD D DC D SDE CR
Sbjct: 59 WACDNDPDCEDGSDEWPQRCR 79
Score = 84.3 bits (209), Expect = 8e-20
Identities = 35/82 (42%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVE 647
C F+C G CI+ F CD DRDC D SDE +CP C FQC S+ C+
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV-----LTCGPASFQCNSST-CIP 56
Query: 648 QSELCDGTDDCGDNSDETSSLC 669
Q CD DC D SDE C
Sbjct: 57 QLWACDNDPDCEDGSDEWPQRC 78
Score = 81.6 bits (202), Expect = 8e-19
Identities = 34/79 (43%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSE 927
F+C G CI+ F CD DRDC D SDE +CP C FQC S+ C+ Q
Sbjct: 6 AEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV-----LTCGPASFQCNSST-CIPQLW 59
Query: 928 LCDGTDDCGDNSDETSSLC 946
CD DC D SDE C
Sbjct: 60 ACDNDPDCEDGSDEWPQRC 78
Score = 79.6 bits (197), Expect = 3e-18
Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 26/92 (28%)
Query: 749 RQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQC----------KCVTMTRI 798
+ CS++EF+C +GKCI Q+ CD D DC DGSDE C C C+
Sbjct: 1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCI----- 55
Query: 799 VQMEVMKWNAAASNWRCDHDEDCTDGSDETEC 830
W CD+D DC DGSDE
Sbjct: 56 -----------PQLWACDNDPDCEDGSDEWPQ 76
Score = 79.2 bits (196), Expect = 4e-18
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 475 NYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQ 534
+ +CI + CD DC DGSDE C FQC ++ CIP+ W CD + DC D
Sbjct: 12 DGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDG 70
Query: 535 SDEAEDLCAG 544
SDE C G
Sbjct: 71 SDEWPQRCRG 80
Score = 78.9 bits (195), Expect = 6e-18
Identities = 31/74 (41%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLS-ELN--------GTFQCSSGHCIAAYFRCD 885
C F+C G CI+ F CD DRDC D S E + +FQC+S CI + CD
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACD 62
Query: 886 GDRDCRDLSDEMNC 899
D DC D SDE
Sbjct: 63 NDPDCEDGSDEWPQ 76
Score = 78.5 bits (194), Expect = 7e-18
Identities = 30/68 (44%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSD 738
KCI + CD DC DGSDE C FQC ++ CIP+ W CD + DC D SD
Sbjct: 14 KCISRQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSD 72
Query: 739 EAEDLCAG 746
E C G
Sbjct: 73 EWPQRCRG 80
Score = 77.3 bits (191), Expect = 2e-17
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNK 1061
+++ C + KCI R +C+ DC D SDE C TC + F+CN+ CI C+
Sbjct: 6 AEFRCHDGKCISRQFVCDSDRDCLDGSDEASC--PVLTCGPASFQCNSSTCIPQLWACDN 63
Query: 1062 ESDCEDDSDE 1071
+ DCED SDE
Sbjct: 64 DPDCEDGSDE 73
Score = 72.7 bits (179), Expect = 1e-15
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 957 YQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAA 1016
++C +G+CI+ +CD +C DGSDE + C V T C + + C++ CI +
Sbjct: 8 FRCHDGKCISRQFVCDSDRDCLDGSDEAS---CPVLT----CG-PASFQCNSSTCIPQLW 59
Query: 1017 LCNHVDDCGDLSDELGCH 1034
C++ DC D SDE
Sbjct: 60 ACDNDPDCEDGSDEWPQR 77
Score = 72.3 bits (178), Expect = 1e-15
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 157
+ ++CD D DC DGSDE C TC F C + CI + + CD + DC D SDE+
Sbjct: 18 RQFVCDSDRDCLDGSDE-ASCP--VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 74
Query: 158 NCR 160
R
Sbjct: 75 PQR 77
Score = 50.7 bits (122), Expect = 5e-08
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVE 1084
TCS ++FRC++GKCI VC+ + DC D SDE C V C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPAS 46
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 101 bits (254), Expect = 6e-26
Identities = 34/80 (42%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 545 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQ--CKNGTFQCSSGHCIA 602
+ R C ++F C +G+CIP W CD D+DC D SDE + F C++G CI
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Query: 603 AYFRCDGDRDCRDLSDEMNC 622
+RCD D DC D SDE C
Sbjct: 61 INWRCDNDNDCGDNSDEAGC 80
Score = 95.8 bits (239), Expect = 8e-24
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDH 570
F C + RCIP W CD ++DCGD+SDE+ ++F C NG+CI WRCD+
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESA--SCAYPTCFPLTQFTCNNGRCININWRCDN 67
Query: 571 DEDCTDGSDEMEC 583
D DC D SDE C
Sbjct: 68 DNDCGDNSDEAGC 80
Score = 95.8 bits (239), Expect = 8e-24
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDH 772
F C + RCIP W CD ++DCGD+SDE+ ++F C NG+CI WRCD+
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESA--SCAYPTCFPLTQFTCNNGRCININWRCDN 67
Query: 773 DEDCTDGSDEMEC 785
D DC D SDE C
Sbjct: 68 DNDCGDNSDEAGC 80
Score = 92.0 bits (229), Expect = 2e-22
Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 10/89 (11%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFA 182
RTC +F+C + +CI ++ CD +DDCGDRSDE +F
Sbjct: 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYP----------TCFPLTQFT 52
Query: 183 CQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
C N +CI + CD ++DCGD SDE CS
Sbjct: 53 CNNGRCININWRCDNDNDCGDNSDEAGCS 81
Score = 91.6 bits (228), Expect = 2e-22
Identities = 36/76 (47%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 378 PCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPK 437
CP +F C ++GRCI SW CD + DC D SDE + + +F C NG CI
Sbjct: 4 TCPPNQFSC-ASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLT-QFTCNNGRCINI 61
Query: 438 LWVCDFDNDCGDDSDE 453
W CD DNDCGD+SDE
Sbjct: 62 NWRCDNDNDCGDNSDE 77
Score = 91.6 bits (228), Expect = 2e-22
Identities = 34/77 (44%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 338 ARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLP---CPDLEFKCASNGRCIL 394
AR C F C +G C P + CD DDC D SDE P +F C +NGRCI
Sbjct: 2 ARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTC-NNGRCIN 60
Query: 395 NSWKCDGEPDCKDGSDE 411
+W+CD + DC D SDE
Sbjct: 61 INWRCDNDNDCGDNSDE 77
Score = 88.5 bits (220), Expect = 2e-21
Identities = 32/78 (41%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQ-CRAGSFQCDNGNCTPSA 357
C Q C +CIP W CD + DCGD SDE SC F C+NG C
Sbjct: 5 CPPNQFSCA--SGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININ 62
Query: 358 SICDGVDDCRDGSDEKHC 375
CD +DC D SDE C
Sbjct: 63 WRCDNDNDCGDNSDEAGC 80
Score = 82.7 bits (205), Expect = 3e-19
Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 419 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRC 478
R C + +F+C +G CIP W CD D+DCGD SDE A C N RC
Sbjct: 3 RTCPPN-QFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCN---NGRC 58
Query: 479 IPKWLFCDGKDDCRDGSDELPQNC 502
I CD +DC D SDE C
Sbjct: 59 ININWRCDNDNDCGDNSDE--AGC 80
Score = 80.8 bits (200), Expect = 2e-18
Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 587 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCV 646
C F C+SG CI + CD D DC D SDE P +F C + C+
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAY---PTCFPLTQFTCNNGR-CI 59
Query: 647 EQSELCDGTDDCGDNSDETSSLCSN 671
+ CD +DCGDNSDE CS+
Sbjct: 60 NINWRCDNDNDCGDNSDEAG--CSH 82
Score = 79.6 bits (197), Expect = 3e-18
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNK 1061
+Q++C++ +CI + C+ DDCGD SDE + +QF CNNG+CI+ + C+
Sbjct: 8 NQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDN 67
Query: 1062 ESDCEDDSDEPLHCN 1076
++DC D+SDE C+
Sbjct: 68 DNDCGDNSDE-AGCS 81
Score = 78.5 bits (194), Expect = 8e-18
Identities = 33/65 (50%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 475 NYRCIPKWLFCDGKDDCRDGSDELPQNCPK-CHETTDFQCKNNRCIPKRWMCDFENDCGD 533
+ RCIP CD DDC D SDE C T F C N RCI W CD +NDCGD
Sbjct: 14 SGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGD 73
Query: 534 QSDEA 538
SDEA
Sbjct: 74 NSDEA 78
Score = 78.1 bits (193), Expect = 1e-17
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASY 968
CP +F CAS C+ S CD DDCGD SDE++S C+ C L ++ C+NGRCI
Sbjct: 5 CPPNQFSCASGR-CIPISWTCDLDDDCGDRSDESAS-CAYPTCFPLTQFTCNNGRCININ 62
Query: 969 QLCDGVDNCGDGSDENN 985
CD ++CGD SDE
Sbjct: 63 WRCDNDNDCGDNSDEAG 79
Score = 78.1 bits (193), Expect = 1e-17
Identities = 32/63 (50%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNCPK-CHETTDFQCKNNRCIPKRWMCDFENDCGDQS 737
+CIP CD DDC D SDE C T F C N RCI W CD +NDCGD S
Sbjct: 16 RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNS 75
Query: 738 DEA 740
DEA
Sbjct: 76 DEA 78
Score = 77.7 bits (192), Expect = 1e-17
Identities = 30/77 (38%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 834 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLS-----------ELNGTFQCSSGHCIAAYF 882
C F C+SG CI + CD D DC D S F C++G CI +
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININW 63
Query: 883 RCDGDRDCRDLSDEMNC 899
RCD D DC D SDE C
Sbjct: 64 RCDNDNDCGDNSDEAGC 80
Score = 77.3 bits (191), Expect = 2e-17
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSE 927
F C+SG CI + CD D DC D SDE P +F C + C+ +
Sbjct: 8 NQFSCASGRCIPISWTCDLDDDCGDRSDESASCAY---PTCFPLTQFTCNNGR-CININW 63
Query: 928 LCDGTDDCGDNSDETSSLCSN 948
CD +DCGDNSDE CS+
Sbjct: 64 RCDNDNDCGDNSDEAG--CSH 82
Score = 76.9 bits (190), Expect = 4e-17
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 157
W CD D+DCGD SDE +F C N +CI + CD ++DCGD SDE
Sbjct: 20 ISWTCDLDDDCGDRSDE-SASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEA 78
Query: 158 NC 159
C
Sbjct: 79 GC 80
Score = 76.5 bits (189), Expect = 4e-17
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 43/118 (36%)
Query: 747 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKW 806
+ R C ++F C +G+CIP W CD D+DC D SDE
Sbjct: 1 SARTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASC-------------------- 40
Query: 807 NAAASNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLS 864
F C++G CI +RCD D DC D S
Sbjct: 41 -----------------------AYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNS 75
Score = 51.9 bits (125), Expect = 2e-08
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCG-HKCVD 1094
TC +QF C +G+CI C+ + DC D SDE C C + C +C++
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 106 bits (266), Expect = 1e-23
Identities = 59/304 (19%), Positives = 87/304 (28%), Gaps = 55/304 (18%)
Query: 375 CDLP--CPDLEFK-CASNGR-----CILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTE 426
C LP CP CA+N R C S +C +N C + +
Sbjct: 43 CKLPYQCPKNGTAVCATNRRSFPTYCQQKSLEC---------LHPGTKFLNNGTCTAEGK 93
Query: 427 FACR--NGHCIPKLWVCDFDND-------CGDDSDEPA--YMCRQRNCTKGWERCPGKTN 475
F+ +G+ + V D C C +G +
Sbjct: 94 FSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVACLDLGFQQGAD------- 146
Query: 476 YRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQS 535
+ + C + C + D D
Sbjct: 147 ---TQRRFKLSDLSINSTECLHV-----HCR---GLETSLAECTFTKRRTMGYQDFADVV 195
Query: 536 DEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQC 595
+ + FQC NGK I CD DC D SDE+ C C+ F C
Sbjct: 196 CYTQKAD-----SPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCC--KACQGKGFHC 248
Query: 596 SSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGT 655
SG CI + ++C+G+ DC DE+ C E + A + +
Sbjct: 249 KSGVCIPSQYQCNGEVDCITGEDEVGCA--GFASVAQEETEILTADMDAERRRIKSLLPK 306
Query: 656 DDCG 659
CG
Sbjct: 307 LSCG 310
Score = 99.6 bits (248), Expect = 2e-21
Identities = 69/326 (21%), Positives = 102/326 (31%), Gaps = 68/326 (20%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDH 570
F RCI +C C +CA R + Q K+ +C+ + +
Sbjct: 29 FCQPWQRCIEGTCVCKLPYQCPKN---GTAVCATNRR-SFPTYCQQKSLECLHPGTKFLN 84
Query: 571 DEDCTDGSD-EMECGGFQCKN-GTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPG 628
+ CT + + G + F C R+ +
Sbjct: 85 NGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREAN----------- 133
Query: 629 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCD 688
C + FQ + ++ D NS E + TSL +C
Sbjct: 134 -VACLDLGFQQGA------DTQRRFKLSDLSINSTECLHVHCRGLETSLAECTFTKRRTM 186
Query: 689 GKDDCRDGSDEL-PQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGA 747
G D D + P FQC N + I + CD NDCGDQSDE C
Sbjct: 187 GYQDFADVVCYTQKADSPMDDF---FQCVNGKYISQMKACDGINDCGDQSDELC--C--- 238
Query: 748 YRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSD-------------------------- 781
+ C F CK+G CIP+Q++C+ + DC G D
Sbjct: 239 -KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAER 297
Query: 782 --------EMECGGFQCKCVTMTRIV 799
++ CG + RIV
Sbjct: 298 RRIKSLLPKLSCGVKNRMHIRRKRIV 323
Score = 99.6 bits (248), Expect = 2e-21
Identities = 46/210 (21%), Positives = 58/210 (27%), Gaps = 25/210 (11%)
Query: 326 CGDGSDEPMSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFK 385
C M C FQ G T + HC
Sbjct: 123 CKSSWS--MREANVACLDLGFQ--QGADTQRRFKLSDLSINSTECLHVHCR-------GL 171
Query: 386 CASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDN 445
S C + G D D D F C NG I ++ CD N
Sbjct: 172 ETSLAECTFTKRRTMGYQDFADVVCYTQKAD----SPMDDFFQCVNGKYISQMKACDGIN 227
Query: 446 DCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPK- 504
DCGD SDE C + + CIP C+G+ DC G DE+
Sbjct: 228 DCGDQSDE-------LCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFAS 280
Query: 505 -CHETTDFQCKNNRCIPKRWMCDFEN-DCG 532
E T+ + +R CG
Sbjct: 281 VAQEETEILTADMDAERRRIKSLLPKLSCG 310
Score = 97.7 bits (243), Expect = 7e-21
Identities = 52/318 (16%), Positives = 81/318 (25%), Gaps = 51/318 (16%)
Query: 555 QCKNGKCI---PAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDR 611
+C G C+ P Q + C C Q S C+ + +
Sbjct: 35 RCIEGTCVCKLPYQCPKNGTAVCATNRRSFPT---YC-----QQKSLECLHPGTKFLNNG 86
Query: 612 DCRDLSD-EMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSD--ETSSL 668
C ++ E K + + C + E +
Sbjct: 87 TCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFI-----------CKSSWSMREANVA 135
Query: 669 CSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCD 728
C ++ + + C + C +
Sbjct: 136 CLDL-GFQQGADTQRRFKLSDLSINSTECLHV-----HCR---GLETSLAECTFTKRRTM 186
Query: 729 FENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGF 788
D D + + FQC NGK I CD DC D SDE+ C
Sbjct: 187 GYQDFADVVCYTQKAD-----SPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCC--- 238
Query: 789 QCKCVTMTRIVQMEVMKWNAAASNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCI 848
C + V S ++C+ + DC G DE C GF +
Sbjct: 239 -KACQGKGFHCKSGV----CIPSQYQCNGEVDCITGEDEVGCAGFAS----VAQEETEIL 289
Query: 849 AAYFRCDGDRDCRDLSEL 866
A + R L +L
Sbjct: 290 TADMDAERRRIKSLLPKL 307
Score = 97.7 bits (243), Expect = 8e-21
Identities = 61/341 (17%), Positives = 89/341 (26%), Gaps = 59/341 (17%)
Query: 130 FACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCI 189
F +CI T C C + C R ++ +C+
Sbjct: 29 FCQPWQRCIEGTCVCKLPYQCP-----------KNGTAVCATNRR-SFPTYCQQKSLECL 76
Query: 190 RKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRPYDIHV-YHPLKQLAYPNPCDGD--- 245
C + V + + V + Q C
Sbjct: 77 HPGTKFLNNGTC-------TAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSM 129
Query: 246 ---NGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVANCTQG 302
N C L AD + + N
Sbjct: 130 REANVACLDLGF-----------QQGADTQRRFKLSDLSINSTECL-------------- 164
Query: 303 QHHCGGHDQK---CIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSASI 359
HC G + C + G +D D + FQC NG
Sbjct: 165 HVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMD--DFFQCVNGKYISQMKA 222
Query: 360 CDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNR 419
CDG++DC D SDE C C F C +G CI + ++C+GE DC G DE
Sbjct: 223 CDGINDCGDQSDELCCK-ACQGKGFHC-KSGVCIPSQYQCNGEVDCITGEDEVGCAGFAS 280
Query: 420 PCDKDTEFACRNGHCIPKLWVCDFDN-DCGDDSDEPAYMCR 459
++TE + + CG + R
Sbjct: 281 VAQEETEILTADMDAERRRIKSLLPKLSCGVKNRMHIRRKR 321
Score = 91.9 bits (228), Expect = 5e-19
Identities = 54/311 (17%), Positives = 86/311 (27%), Gaps = 68/311 (21%)
Query: 669 CSNMNCTSLHKCIPKWLFC--------DGKDDCRDGSDELPQNCPKCHETTDFQCKNNRC 720
C + C +CI C +G C P C Q K+ C
Sbjct: 25 CDKVFCQPWQRCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYC---------QQKSLEC 75
Query: 721 IPKRWMCDFENDCGDQSDEAEDLCAGA----------YRQCSESEFQCKN---------- 760
+ C + + L G ++ F CK+
Sbjct: 76 LHPGTKFLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVA 135
Query: 761 --------GKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASN 812
G +++ + + C G + +
Sbjct: 136 CLDLGFQQGADTQRRFKLSDLSINSTECLHVHCRGLETS-------------LAECTFTK 182
Query: 813 WRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSE------- 865
R +D D T+ + FQC +G I+ CDG DC D S+
Sbjct: 183 RRTMGYQDFADVVCYTQKADS-PMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKAC 241
Query: 866 LNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQ 925
F C SG CI + ++C+G+ DC DE+ C E + A +
Sbjct: 242 QGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCA--GFASVAQEETEILTADMDAERRR 299
Query: 926 SELCDGTDDCG 936
+ CG
Sbjct: 300 IKSLLPKLSCG 310
Score = 87.3 bits (216), Expect = 1e-17
Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 937 DNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVK 996
+ S+ C +++C + C + + G + D +T+
Sbjct: 154 SDLSINSTECLHVHCRG---LETSLAECTFTKRRTMGYQDFADVVC---------YTQKA 201
Query: 997 PCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYH 1056
+ + C N K I + C+ ++DCGD SDEL C C F C +G CI
Sbjct: 202 DSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA----CQGKGFHCKSGVCIPSQ 257
Query: 1057 LVCNKESDCEDDSDEPLHCNVDECAKVETNQC 1088
CN E DC DE A+ ET
Sbjct: 258 YQCNGEVDCITGEDEVGCAGFASVAQEETEIL 289
Score = 86.5 bits (214), Expect = 3e-17
Identities = 53/323 (16%), Positives = 81/323 (25%), Gaps = 62/323 (19%)
Query: 757 QCKNGKCI---PAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNW 813
+C G C+ P Q + C C+
Sbjct: 35 RCIEGTCVCKLPYQCPKNGTAVCATNRRSFPT---YCQQ-----------KSLECLHPGT 80
Query: 814 RCDHDEDCTDGSD-ETECGGFQCKN-GTFQCSSGHCIAAYFRCDGDRD-------CRDLS 864
+ ++ CT + G + F C C DL
Sbjct: 81 KFLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVACLDLG 140
Query: 865 ELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVE 924
G F+ ++C G S C
Sbjct: 141 F-------QQGADTQRRFKLSDLSINSTECLHVHC-----RGLET--------SLAECTF 180
Query: 925 QSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDEN 984
G D D T + +QC NG+ I+ + CDG+++CGD SDE
Sbjct: 181 TKRRTMGYQDFADVVCYTQK----ADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDEL 236
Query: 985 NLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENST-CSSS 1043
C + C + CI CN DC DE+GC S +
Sbjct: 237 CCKACQ----------GKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEET 286
Query: 1044 QFRCNNGKCIDYHLV-CNKESDC 1065
+ + + + C
Sbjct: 287 EILTADMDAERRRIKSLLPKLSC 309
Score = 81.1 bits (200), Expect = 1e-15
Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 18/125 (14%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 157
D D ++ + + F C N K I + CDG +DCGD+SDE
Sbjct: 181 TKRRTMGYQDFADVVCYTQKA----DSPMDDFFQCVNGKYISQMKACDGINDCGDQSDEL 236
Query: 158 NCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVL 217
C + C + F C++ CI Y C+GE DC DE C+ V
Sbjct: 237 CC--------------KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVA 282
Query: 218 RNTTH 222
+ T
Sbjct: 283 QEETE 287
Score = 61.9 bits (150), Expect = 1e-09
Identities = 23/89 (25%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 124 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFAC 183
C E +C G D D D + F C
Sbjct: 167 HCRGLE--TSLAECTFTKRRTMGYQDFADVVCYTQKADS-------------PMDDFFQC 211
Query: 184 QNFKCIRKTYHCDGEDDCGDRSDEFNCSR 212
N K I + CDG +DCGD+SDE C
Sbjct: 212 VNGKYISQMKACDGINDCGDQSDELCCKA 240
Score = 56.5 bits (136), Expect = 6e-08
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 97 QKGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 156
+ CD NDCGD SDE C + C + F C++ CI Y C+GE DC DE
Sbjct: 218 SQMKACDGINDCGDQSDE-LCC----KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDE 272
Query: 157 FNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDR 204
C +E R+ + CG +
Sbjct: 273 VGCA--------GFASVAQEETEILTADMDAERRRIKSLLPKLSCGVK 312
Score = 29.9 bits (67), Expect = 7.6
Identities = 26/214 (12%), Positives = 52/214 (24%), Gaps = 49/214 (22%)
Query: 906 GRFCPEYKFQCASTHLCVEQSELC--------DGTDDCGDNSDETSSLCSNMN--CTSLH 955
FC + C+E + +C +GT C N + C + C
Sbjct: 27 KVFCQPW-------QRCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLHPG 79
Query: 956 KYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELY----------SQYT 1005
+NG C A + G+ ++ + V + ++ +
Sbjct: 80 TKFLNNGTCTA---EGKFSVSLKHGNTDSEGIVE-VKLVDQDKTMFICKSSWSMREANVA 135
Query: 1006 CSN-----HKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCN 1060
C + R + + + C + +C
Sbjct: 136 CLDLGFQQGADTQRRFKLSDLSINSTECLHVHCR---------GLETSLAECTFTKRRTM 186
Query: 1061 KESDCEDDSDEPLHCNVDECAKVETNQCG-HKCV 1093
D D + + QC K +
Sbjct: 187 GYQDFADVVCYT---QKADSPMDDFFQCVNGKYI 217
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG; 1.88A
{Eubacterium rectale}
Length = 302
Score = 87.1 bits (215), Expect = 2e-18
Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 13/144 (9%)
Query: 1176 KLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT 1235
+L + + + VY+ N I + ++ N +
Sbjct: 168 QLYRYDTASQSEALF---YDCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT- 223
Query: 1236 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFED 1295
E +I N + Y + V DG + G + +
Sbjct: 224 -EANIEHYN-VYGSLI---FYQRGGDNPALCVVKNDGTGFKELAKG----EFCNINVTSQ 274
Query: 1296 HIYWTDWNTKSINRADKFNAREIQ 1319
++Y+TD+ + N I+
Sbjct: 275 YVYFTDFVSNKEYCTSTQNPDTIK 298
Score = 58.2 bits (140), Expect = 7e-09
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 17/134 (12%)
Query: 1182 LDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAY--IGKIGMDGSNFTRILTHEDD 1239
+G T + I Y+Y+ ++ Q + +I +DG +I H
Sbjct: 95 RNGHG----STVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNH--- 147
Query: 1240 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYW 1299
T + Y+ + + D + + + + L + ++Y+
Sbjct: 148 ----YLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYK---PVVLDDTNVYY 200
Query: 1300 TDWNTKS-INRADK 1312
D N + I +
Sbjct: 201 MDVNRDNAIVHVNI 214
Score = 47.8 bits (113), Expect = 2e-05
Identities = 7/104 (6%), Positives = 27/104 (25%), Gaps = 11/104 (10%)
Query: 1176 KLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT 1235
+ ++ N L + + +++ + + DG+ F +
Sbjct: 208 AIVHVNINNPNPVVLT----EANIEHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAK 263
Query: 1236 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI 1279
++ ++ +Y+ D + +
Sbjct: 264 G-------EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 45.5 bits (107), Expect = 8e-05
Identities = 14/111 (12%), Positives = 42/111 (37%), Gaps = 14/111 (12%)
Query: 1207 GYVYFSSWNLQAYIGKIGMDGSNFTRILTH--------EDDIAWPNALTLDYFTERLYWA 1258
G V+FS+ N + + +DGSN ++ ++ + + + +
Sbjct: 26 GEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVR--NNNQKITSQTFF 83
Query: 1259 DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 1309
+ + + +G ++ + +L ++IY+ ++T++
Sbjct: 84 SYDRNSLCRIKRNGHGSTVLDPDPCIYA----SLIGNYIYYLHYDTQTATS 130
Score = 42.4 bits (99), Expect = 8e-04
Identities = 9/143 (6%), Positives = 31/143 (21%), Gaps = 22/143 (15%)
Query: 1434 ALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAH 1493
+ + IY++ + + + K I +
Sbjct: 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE----------EKKKIKNHYLFTCNTSDR 157
Query: 1494 NIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASP 1553
Y+ G++ + N P + +++ +
Sbjct: 158 YFYYNNPK------NGQLYRYDTASQSEALFYDCNCYKPVVLDD----TNVYYMDVNRDN 207
Query: 1554 RIESAWMDGSHRSATQISNRQAP 1576
I ++ + ++
Sbjct: 208 AIVHVNINNPNP--VVLTEANIE 228
Score = 41.6 bits (97), Expect = 0.001
Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 31/120 (25%)
Query: 2 DFHYKENRFYFADVAAKTIYRSRVGSTEKERAY-------------------------IG 36
+ + FY+ + +YR S + Y I
Sbjct: 151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDTNVYYMDVNRDNAIV 210
Query: 37 KIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG 96
+ ++ N + E +I N + Y + V DG + G
Sbjct: 211 HVNINNPNPVVLT--EANIEHYN-VYGSLI---FYQRGGDNPALCVVKNDGTGFKELAKG 264
Score = 35.9 bits (82), Expect = 0.10
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 11 YFADVAAKTIYRSRVGSTEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 70
+A + IY + Y +I +DG +I H T +
Sbjct: 109 IYASLIGNYIYYLHYDTQTATSLY--RIRIDGEEKKKIKNH-------YLFTCNTSDRYF 159
Query: 71 YWADAHLDYIASVDLDGKHKHIVISGQKGWLCDHDND 107
Y+ + + D + + + D+
Sbjct: 160 YYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLDDT 196
Score = 35.1 bits (80), Expect = 0.14
Identities = 31/285 (10%), Positives = 86/285 (30%), Gaps = 48/285 (16%)
Query: 1255 LYWAD-AHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKF 1313
+++++ + ++++DG + H + + + ++++Y+ N + I F
Sbjct: 28 VFFSNTNDNGRLYAMNIDGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFF 83
Query: 1314 NAREIQAGIL----HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQV 1369
+ + H + + +I + + AT ++
Sbjct: 84 SYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLH------YDTQTATSLY----- 132
Query: 1370 CTNLNGTYACSCNAGFTLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDE 1429
++G + + C +D ++ Y+T + + D
Sbjct: 133 RIRIDGEEK------KKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQS-EALFYDC 185
Query: 1430 RRIEALDIDPVDEIIYWVDSYDRN-IRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAV 1488
+ + +D D +Y++D N I + + ++ + +
Sbjct: 186 NCYKPVVLD--DTNVYYMDVNRDNAIVHVNI---------NNPNPVVLTEANIEHYNVYG 234
Query: 1489 DWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPS 1533
I Y D + V NDG + L + +
Sbjct: 235 SLI---FYQRGGD------NPALCVVKNDGTGFKELAKGEFCNIN 270
Score = 34.7 bits (79), Expect = 0.19
Identities = 5/68 (7%), Positives = 18/68 (26%), Gaps = 7/68 (10%)
Query: 27 STEKERAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD 86
+ + + DG+ F + ++ ++ +Y+ D +
Sbjct: 240 QRGGDNPALCVVKNDGTGFKELAKG-------EFCNINVTSQYVYFTDFVSNKEYCTSTQ 292
Query: 87 GKHKHIVI 94
+
Sbjct: 293 NPDTIKAL 300
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 66.4 bits (162), Expect = 2e-13
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 542 CAGAYRQCSESEFQCKN-GKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHC 600
+ C S F C C+P +W CD D+DC DG+DE G + SG
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGST 61
Query: 601 IAAYFRCDGDRDCRD 615
R
Sbjct: 62 EELRVRLASHLRKLR 76
Score = 57.2 bits (138), Expect = 3e-10
Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 335 SCPARQCRAGSFQCDNGN-CTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCAS-NGRC 392
+ C SF C + C P +CDG DC DG+DE C S +G
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA-GCLYNSTGSGSGSGST 61
Query: 393 ILNSWKCDGEPDCKD 407
+
Sbjct: 62 EELRVRLASHLRKLR 76
Score = 55.6 bits (134), Expect = 1e-09
Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 378 PCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNG--HCI 435
C F C C+ W CDG+ DC DG+DE +G
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE-----SIAAGCLYNSTGSGSGSGSTE 62
Query: 436 PKLWVCD 442
Sbjct: 63 ELRVRLA 69
Score = 52.6 bits (126), Expect = 1e-08
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 494 GSDELPQNCPKCHETTDFQCKN-NRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSES 552
GS + C + F C + C+P+RW+CD + DC D +DE+ C +
Sbjct: 1 GSKLEGKTCG----PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG------CLYN 50
Query: 553 EFQCKNGK--CIPAQWRCD 569
+G + R
Sbjct: 51 STGSGSGSGSTEELRVRLA 69
Score = 52.6 bits (126), Expect = 1e-08
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 696 GSDELPQNCPKCHETTDFQCKN-NRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSES 754
GS + C + F C + C+P+RW+CD + DC D +DE+ C +
Sbjct: 1 GSKLEGKTCG----PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG------CLYN 50
Query: 755 EFQCKNGK--CIPAQWRCD 771
+G + R
Sbjct: 51 STGSGSGSGSTEELRVRLA 69
Score = 51.8 bits (124), Expect = 2e-08
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 118 CHDKYRTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTC 176
+ +TC F+C C+ + + CDG+ DC D +DE +
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGST 61
Query: 177 SSEEFAC-QNFKCIRK 191
+ + +RK
Sbjct: 62 EELRVRLASHLRKLRK 77
Score = 50.2 bits (120), Expect = 7e-08
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSAS 358
C C G C+P W CDG++DC DG+DE C S +G+ +
Sbjct: 9 CGPSSFSCPG-THVCVPERWLCDGDKDCADGADE-SIAAG--CLYNSTGSGSGSGSTEEL 64
Query: 359 I--CDG 362
Sbjct: 65 RVRLAS 70
Score = 49.9 bits (119), Expect = 1e-07
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 674 CTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKC-HETTDFQCKNNRCIPKRWMCDFEND 732
C H C+P+ CDG DC DG+DE C + +T + R
Sbjct: 16 CPGTHVCVPERWLCDGDKDCADGADE--SIAAGCLYNSTGSGSGSGSTEELRVRLASHLR 73
Query: 733 CGDQ 736
+
Sbjct: 74 KLRK 77
Score = 48.7 bits (116), Expect = 3e-07
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 458 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKC-HETTDFQCKNN 516
+ C CPG + C+P+ CDG DC DG+DE C + +T +
Sbjct: 4 LEGKTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADE--SIAAGCLYNSTGSGSGSG 59
Query: 517 RCIPKRWMCDFENDCGDQ 534
R +
Sbjct: 60 STEELRVRLASHLRKLRK 77
Score = 48.3 bits (115), Expect = 3e-07
Identities = 14/52 (26%), Positives = 18/52 (34%)
Query: 811 SNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRD 862
W CD D+DC DG+DE+ G + SG R
Sbjct: 25 ERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRKLR 76
Score = 48.3 bits (115), Expect = 4e-07
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 583 CGGFQCKNGTFQC-SSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAS 641
G C +F C + C+ + CDGD+DC D +DE C S
Sbjct: 4 LEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG-------CLYNSTGSGS 56
Query: 642 THLCVEQSEL-CDG 654
E+ +
Sbjct: 57 GSGSTEELRVRLAS 70
Score = 45.6 bits (108), Expect = 3e-06
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 416 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKT 474
+ C + F+C H C+P+ W+CD D DC D +DE N T G
Sbjct: 4 LEGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST-----GSGSG 57
Query: 475 NYRCIPKWLFCDG-KDDCRD 493
+ + R
Sbjct: 58 SGSTEELRVRLASHLRKLRK 77
Score = 45.2 bits (107), Expect = 5e-06
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 169 CHDKYRTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNCS 211
+ +TC F+C C+ + + CDG+ DC D +DE +
Sbjct: 2 SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 45
Score = 44.8 bits (106), Expect = 7e-06
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSL----HKCIPKWLFC 687
C F C TH+CV + LCDG DC D +DE+ + N T +
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRL 68
Query: 688 DG-KDDCRD 695
R
Sbjct: 69 ASHLRKLRK 77
Score = 44.5 bits (105), Expect = 9e-06
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASY 968
C F C TH+CV + LCDG DC D +DE+ + N T +G
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGS---GSGSGSTEELR 65
Query: 969 QLCDG 973
Sbjct: 66 VRLAS 70
Score = 44.1 bits (104), Expect = 1e-05
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 868 GTFQC-SSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQS 926
+F C + C+ + CDGD+DC D +DE C S E+
Sbjct: 12 SSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG-------CLYNSTGSGSGSGSTEEL 64
Query: 927 EL-CDG 931
+
Sbjct: 65 RVRLAS 70
Score = 42.9 bits (101), Expect = 3e-05
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 1032 GCHKENSTCSSSQFRC-NNGKCIDYHLVCNKESDCEDDSDE 1071
G E TC S F C C+ +C+ + DC D +DE
Sbjct: 1 GSKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 42.5 bits (100), Expect = 5e-05
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 830 CGGFQCKNGTFQC-SSGHCIAAYFRCDGDRDCRDLS---------ELNGTFQCSSGHCIA 879
G C +F C + C+ + CDGD+DC D + + SG
Sbjct: 4 LEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEE 63
Query: 880 AYFRCDGDRDCRD 892
R
Sbjct: 64 LRVRLASHLRKLR 76
Score = 40.2 bits (94), Expect = 2e-04
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 1002 SQYTCSN-HKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGK--CIDYHLV 1058
S ++C H C+ LC+ DC D +DE + C + +G + +
Sbjct: 12 SSFSCPGTHVCVPERWLCDGDKDCADGADESIA----AGCLYNSTGSGSGSGSTEELRVR 67
Query: 1059 CNKESDCEDD 1068
Sbjct: 68 LASHLRKLRK 77
Score = 38.3 bits (89), Expect = 0.001
Identities = 12/57 (21%), Positives = 15/57 (26%), Gaps = 7/57 (12%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQN--FKCIRKTYHCDGEDDCGD 152
+ WLCD D DC DG+DE C +
Sbjct: 25 ERWLCDGDKDCADGADESIAA-----GCLYNSTGSGSGSGSTEELRVRLASHLRKLR 76
Score = 35.6 bits (82), Expect = 0.010
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 944 SLCSNMNCTSLHKYQCDN-GRCIASYQLCDGVDNCGDGSDENNLTLCT 990
S C + C C+ LCDG +C DG+DE+ C
Sbjct: 2 SKLEGKTCGP-SSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL 48
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 70.3 bits (171), Expect = 2e-13
Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 276 SYTCACPNQFY--LDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE- 332
P F +D R K +C + CGG++Q+CI CDG +DC + DE
Sbjct: 28 EAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED 87
Query: 333 PMSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRC 392
P C +AG+ C D K +
Sbjct: 88 PDVCDTSVVKAGNVFS----------GTSTWHGCLAREDHVTRITITASKRRKFFTARIW 137
Query: 393 ILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGD 449
+ + + E ++ + A + + + H VC F+ +
Sbjct: 138 LRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNE 194
Score = 64.5 bits (156), Expect = 2e-11
Identities = 28/170 (16%), Positives = 42/170 (24%), Gaps = 3/170 (1%)
Query: 360 CDGVDDCRDGSDEKHCDLPCPDLEFKCASN-GRCILNSWKCDGEPDCKDGSDEDPAMCHN 418
+ D K C F+C N CI + CDG DC + DEDP +C
Sbjct: 34 PEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT 93
Query: 419 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRC 478
F+ + S + R + + +
Sbjct: 94 SVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKF-FTARIWLRALVESELERHGEN 152
Query: 479 IPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFE 528
+ G + L C NR +R C
Sbjct: 153 VTSSFNAKGYYNFASRRLILLPTDDHDD-HLAVVCSFNRGDNERAECHRV 201
Score = 60.3 bits (145), Expect = 6e-10
Identities = 27/183 (14%), Positives = 47/183 (25%), Gaps = 21/183 (11%)
Query: 441 CDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQ 500
+ D +C K +C G CI L CDG DC + DE P
Sbjct: 31 KIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGN-EQECISDLLVCDGHKDCHNAHDEDPD 89
Query: 501 NCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAY-----------RQC 549
C T+ + N W + C + D + A +
Sbjct: 90 VCD----TSVVKAGNVFSGTSTW-----HGCLAREDHVTRITITASKRRKFFTARIWLRA 140
Query: 550 SESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDG 609
++G+ + + + + + + CS C
Sbjct: 141 LVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNERAECHR 200
Query: 610 DRD 612
+
Sbjct: 201 VTE 203
Score = 58.0 bits (139), Expect = 3e-09
Identities = 24/202 (11%), Positives = 48/202 (23%), Gaps = 21/202 (10%)
Query: 677 LHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNN--RCIPKRWMCDFENDCG 734
L + + D + + + + E FQC N CI +CD DC
Sbjct: 22 LRTKLDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCH 81
Query: 735 DQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVT 794
+ DE D C S + N + W C D +
Sbjct: 82 NAHDEDPD-------VCDTSVVKAGNVFSGTSTW-----HGCLAREDHVTRITITASKRR 129
Query: 795 MTRIVQMEVMKWNAAASNWRCDHDEDCTDGSDETECGGFQ-CKNGTFQCSSGHCIAAYFR 853
++ + + + + + + G+ + +
Sbjct: 130 KFFTARIWL------RALVESELERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLA 183
Query: 854 CDGDRDCRDLSELNGTFQCSSG 875
+ D +
Sbjct: 184 VVCSFNRGDNERAECHRVTEAT 205
Score = 48.4 bits (114), Expect = 6e-06
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 14/114 (12%)
Query: 100 WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
+CD DC + DE + C + N T+H C R D
Sbjct: 72 LVCDGHKDCHNAHDEDPD------VCDTSVVKAGNVFSGTSTWH-----GCLAREDHVTR 120
Query: 160 RDGSDEGKECHDKYRT---CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 210
+ + R E ++ + + +++ G + R
Sbjct: 121 ITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLP 174
Score = 47.6 bits (112), Expect = 9e-06
Identities = 25/234 (10%), Positives = 51/234 (21%), Gaps = 51/234 (21%)
Query: 566 WRCDHDEDCTDGSDEM-ECGGFQCKNGTFQC--SSGHCIAAYFRCDGDRDCRDLSDEMNC 622
+ D + ++ + + G C+ TFQC + CI+ CDG +DC + DE
Sbjct: 30 EKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 89
Query: 623 PPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIP 682
C + + C D + +
Sbjct: 90 --------VCDTSVVKAGNVF------SGTSTWHGCLAREDHVTRIT------------- 122
Query: 683 KWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAED 742
++ + + + +
Sbjct: 123 --------ITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASR----RL 170
Query: 743 LCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMT 796
+ C D + + E QC + +T
Sbjct: 171 ILLPTDDHDDHLAVVCSF---------NRGDNERAECHRVTEATLHQCADLFVT 215
Score = 46.8 bits (110), Expect = 2e-05
Identities = 20/108 (18%), Positives = 28/108 (25%), Gaps = 22/108 (20%)
Query: 105 DNDCGDGSDEGKECHDKYRTCSSEEFACQ--NFKCIRKTYHCDGEDDCGDRSDEFNCRDG 162
D + + + + C F C +CI CDG DC + DE
Sbjct: 33 DPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD--- 89
Query: 163 SDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 210
C + N T+H C R D
Sbjct: 90 ------------VCDTSVVKAGNVFSGTSTWH-----GCLAREDHVTR 120
Score = 46.4 bits (109), Expect = 2e-05
Identities = 23/164 (14%), Positives = 43/164 (26%), Gaps = 21/164 (12%)
Query: 909 CPEYKFQCASTH-LCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIAS 967
C + FQC C+ +CDG DC + DE +C + N
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDT------SVVKAGNVFSG-- 104
Query: 968 YQLCDGVDNCGDGSDENNLTLCTVHTRVKPC-------ELYSQYTCSNHKCIDRAALCNH 1020
C D T R K L + + + +
Sbjct: 105 ---TSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKG 161
Query: 1021 VDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESD 1064
+ L ++ C+ + + C++ ++
Sbjct: 162 YYNFASRRLILLPTDDH--DDHLAVVCSFNRGDNERAECHRVTE 203
Score = 46.4 bits (109), Expect = 2e-05
Identities = 21/109 (19%), Positives = 28/109 (25%), Gaps = 6/109 (5%)
Query: 1018 CNHVDDCGDLSDELGCHKENSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDEPLHC 1075
+ D E + C F+C N +CI LVC+ DC + DE
Sbjct: 31 KIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 90
Query: 1076 NVDECAKVETNQCG----HKCVDTLTGYYCECNTGYNDDDIGTVSPSSN 1120
K G H C+ T T
Sbjct: 91 CDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLR 139
Score = 45.7 bits (107), Expect = 4e-05
Identities = 19/155 (12%), Positives = 41/155 (26%), Gaps = 6/155 (3%)
Query: 922 CVEQSELCDGTD-DCGDNSDETSSLCSNMNCTSLHKYQC--DNGRCIASYQLCDGVDNCG 978
+ + + D + + + +QC + CI+ +CDG +C
Sbjct: 22 LRTKLDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCH 81
Query: 979 DGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENS 1038
+ DE+ T V T + H C+ R + + +
Sbjct: 82 NAHDEDP---DVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWL 138
Query: 1039 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPL 1073
+G+ + + L
Sbjct: 139 RALVESELERHGENVTSSFNAKGYYNFASRRLILL 173
Score = 43.3 bits (101), Expect = 3e-04
Identities = 37/231 (16%), Positives = 56/231 (24%), Gaps = 44/231 (19%)
Query: 815 CDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCSS 874
D + D E + + HC F+C G+
Sbjct: 22 LRTKLDEAEKIDP-EHFVSEIDARVTKIEGTHCEKRTFQCGGN----------------E 64
Query: 875 GHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDD 934
CI+ CDG +DC + DE C + + C +D
Sbjct: 65 QECISDLLVCDGHKDCHNAHDEDPD--------VCDTSVVKAGNVFSGTSTWHGCLARED 116
Query: 935 CGDNSDETSSLCSNMNCTSLHK------YQCDNGRCIASYQLCDGVDNCGDGSDENNLTL 988
T+S + +G + S G N T
Sbjct: 117 HVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYNFASRRLILLPTD 176
Query: 989 CTVHTRVKPCELYSQYTCSNHKCIDRAALCNHV-----DDCGDLSDELGCH 1034
CS ++ + A C+ V C DL L H
Sbjct: 177 DHDDH--------LAVVCSFNRGDNERAECHRVTEATLHQCADLFVTLEEH 219
Score = 39.9 bits (92), Expect = 0.003
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 144 CDGEDDCGDRSDEFNCRD-----GSDEGKECHDKYRTCSSEEFACQ--NFKCIRKTYHCD 196
+ + DE D + + + C F C +CI CD
Sbjct: 16 DRIIEKLRTKLDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCD 75
Query: 197 GEDDCGDRSDEFNCSRDYRVLRNTTH 222
G DC + DE D V++
Sbjct: 76 GHKDCHNAHDEDPDVCDTSVVKAGNV 101
Score = 38.7 bits (89), Expect = 0.008
Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 12/110 (10%)
Query: 1002 SQYTCSNH--KCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVC 1059
+ C + +CI +C+ DC + DE + C +S + N
Sbjct: 56 RTFQCGGNEQECISDLLVCDGHKDCHNAHDE-----DPDVCDTSVVKAGNVFSG-----T 105
Query: 1060 NKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYND 1109
+ C D + + + +
Sbjct: 106 STWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTS 155
Score = 29.5 bits (65), Expect = 7.6
Identities = 10/106 (9%), Positives = 25/106 (23%), Gaps = 13/106 (12%)
Query: 102 CDHDNDCGDGSDEGKECHDK------------YRTCSSEEFACQNFKCIRKTYHCDGEDD 149
+ C D + E ++ + + +++ G +
Sbjct: 105 TSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFNAKGYYN 164
Query: 150 CGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHC 195
R D D+ + +E C + + C
Sbjct: 165 FASRRLILLPTDDHDDHLAVVCSFNRGDNERAEC-HRVTEATLHQC 209
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 64.5 bits (158), Expect = 7e-13
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
C+N G Y C C G+I+ N C+D DEC+ G + C N+ G + C+C
Sbjct: 17 GQCINTDGS--YRCECPFGYILAGNE---CVDTDECSVGNPCGNGTCKNVIGGFECTCEE 71
Query: 1384 GFTLSDGLS 1392
GF ++
Sbjct: 72 GFEPGPMMT 80
Score = 48.7 bits (117), Expect = 3e-07
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 1353 CLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLS 1388
+D+DEC C N +G+Y C C G+ L+
Sbjct: 2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA 37
Score = 32.6 bits (75), Expect = 0.13
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 1077 VDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGT 1114
DEC+ V C + + G+ C C G+ + T
Sbjct: 44 TDECS-VGNPCGNGTCKNVIGGFECTCEEGFEPGPMMT 80
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 64.2 bits (157), Expect = 9e-13
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHC-SQVCTNLNGTYACSCN 1382
C+N G + C C +G+ K C+D+DEC C VC N G+Y C C
Sbjct: 16 GQCVNTPGD--FECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECP 73
Query: 1383 AGFTLSD 1389
G LS
Sbjct: 74 PGHQLSP 80
Score = 45.7 bits (109), Expect = 3e-06
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 1355 DVDECATGIHHCSQ-VCTNLNGTYACSCNAGFTLSDGLSGVC 1395
D+DEC C + C N G + C C+ G+ + C
Sbjct: 2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43
Score = 36.5 bits (85), Expect = 0.007
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 21/80 (26%)
Query: 1040 CSSSQFRCNNGKCID------------YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQ 1087
C S C G+C++ Y +C D +DEC +
Sbjct: 6 CRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMD---------IDECQRDPLLC 56
Query: 1088 CGHKCVDTLTGYYCECNTGY 1107
G C +T Y CEC G+
Sbjct: 57 RGGVCHNTEGSYRCECPPGH 76
Score = 32.3 bits (74), Expect = 0.18
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 1077 VDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIG 1113
+DEC +CV+T + C+C+ GY +
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMM 39
Score = 27.6 bits (62), Expect = 7.1
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 276 SYTCACPNQFYLDPRDNKTC--VANCTQGQHHCGGH 309
+ C C + K C + C + C G
Sbjct: 24 DFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGG 59
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 68.0 bits (165), Expect = 1e-12
Identities = 29/191 (15%), Positives = 47/191 (24%), Gaps = 26/191 (13%)
Query: 359 ICDGVDDCRDGSDEKHCDL------------------PCPDLEFKCASN-GRCILNSWKC 399
+ + D + ++ D+ C + E +C + CI + C
Sbjct: 16 LAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFC 75
Query: 400 DGEPDCKDGSDEDPAMCHNRPCDKDTEFACR--NGHCIPKLWVCDFDNDCGDDSDEPAYM 457
DGE DC+DGSDEDP C + + C D+ +
Sbjct: 76 DGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNP----DHAIVTITAAHRKS 131
Query: 458 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNR 517
+ G + L + E C N
Sbjct: 132 FFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQS-EGYGVICDFNL 190
Query: 518 CIPKRWMCDFE 528
C
Sbjct: 191 GDDDHADCKIV 201
Score = 66.8 bits (162), Expect = 3e-12
Identities = 28/193 (14%), Positives = 49/193 (25%), Gaps = 16/193 (8%)
Query: 687 CDGKDDCRDGSDELPQNCPKCH-ETTDFQCKNN--RCIPKRWMCDFENDCGDQSDEAEDL 743
D N + H + + +C+ + CI CD E DC D SDE +
Sbjct: 32 HDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 91
Query: 744 CAGAYRQC-SESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQME 802
C+ S C DH + + + E
Sbjct: 92 CSLNITHVGSSYTGLATWTSCED--LNPDHAIVTITAAHRKSFFPNRVWL---RATLSYE 146
Query: 803 VMKWNAAASNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRD 862
+ + + S + + Q + C + D D
Sbjct: 147 LDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICD-------FNLGDDDHADCK 199
Query: 863 LSELNGTFQCSSG 875
+ + F C+
Sbjct: 200 IVVPSSLFVCAHF 212
Score = 66.5 bits (161), Expect = 4e-12
Identities = 35/204 (17%), Positives = 48/204 (23%), Gaps = 18/204 (8%)
Query: 394 LNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRN--GHCIPKLWVCDFDNDCGDDS 451
N D + + CD+ E CR CI L CD + DC D S
Sbjct: 27 YNKLTHDVDKKTIRQLKARISNLEEHHCDEH-ESECRGDVPECIHDLLFCDGEKDCRDGS 85
Query: 452 DEPAYMCRQRNCTKGWERCPGKTNYRCIPK-WLFCDGKDDCRDGSDELPQNCPKCHETTD 510
DE C G T C P +
Sbjct: 86 DEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLS- 144
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDH 570
++ + + G + E L A Q C
Sbjct: 145 YELDEHDHTVSTTQLRGFYNFGKR----ELLLAPLKGQSEGYGVICDFN---------LG 191
Query: 571 DEDCTDGSDEMECGGFQCKNGTFQ 594
D+D D + F C + Q
Sbjct: 192 DDDHADCKIVVPSSLFVCAHFNAQ 215
Score = 62.2 bits (150), Expect = 1e-10
Identities = 26/163 (15%), Positives = 44/163 (26%), Gaps = 8/163 (4%)
Query: 510 DFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKN--GKCIPAQWR 567
K + + + D + C E E +C+ +CI
Sbjct: 15 YLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLF 74
Query: 568 CDHDEDCTDGSDEMECGGFQCKNGTFQC-SSGHCIAAYFRCDGDRD--CRDLSDEMNCPP 624
CD ++DC DGSDE C SS +A + C+ +
Sbjct: 75 CDGEKDCRDGSDEDPE---TCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKS 131
Query: 625 RYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSS 667
+P + H + G + G +
Sbjct: 132 FFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAP 174
Score = 62.2 bits (150), Expect = 1e-10
Identities = 28/163 (17%), Positives = 47/163 (28%), Gaps = 8/163 (4%)
Query: 287 LDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE-PMSCPARQCRAGS 345
L R + +C + + C G +CI CDGE+DC DGSDE P +C GS
Sbjct: 42 LKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGS 101
Query: 346 FQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCAS----NGRCILNSWKCDG 401
T + + + P S +++ + G
Sbjct: 102 SYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRG 161
Query: 402 EPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFD 444
+ + + + + C C
Sbjct: 162 ---FYNFGKRELLLAPLKGQSEGYGVICDFNLGDDDHADCKIV 201
Score = 57.6 bits (138), Expect = 4e-09
Identities = 28/202 (13%), Positives = 46/202 (22%), Gaps = 30/202 (14%)
Query: 652 CDGTDDCGDNSDETSSLCSNMNCTSLH--------KCIPKWLFCDGKDDCRDGSDELPQN 703
D S +C +CI LFCDG+ DCRDGSDE P+
Sbjct: 32 HDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 91
Query: 704 CPK----CHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCK 759
C + C + + + ++
Sbjct: 92 CSLNITHVGSSYTGLATWTSCEDLNP---DHAIVTITAAHRKSFFPNRVWLRATLSYELD 148
Query: 760 NGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNWRCDHDE 819
+ + + + Q + + D+
Sbjct: 149 EHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFN---------------LGDD 193
Query: 820 DCTDGSDETECGGFQCKNGTFQ 841
D D F C + Q
Sbjct: 194 DHADCKIVVPSSLFVCAHFNAQ 215
Score = 56.8 bits (136), Expect = 7e-09
Identities = 31/194 (15%), Positives = 44/194 (22%), Gaps = 13/194 (6%)
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTH-LCVEQSEL 928
Y + D D + + C E++ +C C+
Sbjct: 16 LAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHH-CDEHESECRGDVPECIHDLLF 74
Query: 929 CDGTDDCGDNSDETSSLCSN--MNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNL 986
CDG DC D SDE CS + S + C D + +
Sbjct: 75 CDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLN--PDHAIVTITAAHRKSF 132
Query: 987 TLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFR 1046
V Y H + G L K
Sbjct: 133 FPNRVW-----LRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQ--SEGYGVI 185
Query: 1047 CNNGKCIDYHLVCN 1060
C+ D H C
Sbjct: 186 CDFNLGDDDHADCK 199
Score = 54.9 bits (131), Expect = 3e-08
Identities = 34/215 (15%), Positives = 56/215 (26%), Gaps = 24/215 (11%)
Query: 593 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTH-LCVEQSEL 651
Y + D D + + C E++ +C C+
Sbjct: 16 LAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHH-CDEHESECRGDVPECIHDLLF 74
Query: 652 CDGTDDCGDNSDETSSLCSN--MNCTSLHKCIPKWLFCDGKDD---CRDGSDELPQNCPK 706
CDG DC D SDE CS + S + + W C+ + + ++
Sbjct: 75 CDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFP 134
Query: 707 CHE----TTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGK 762
T ++ + + G + E L A Q C
Sbjct: 135 NRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKR----ELLLAPLKGQSEGYGVICDFN- 189
Query: 763 CIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTR 797
D+D D + F C R
Sbjct: 190 --------LGDDDHADCKIVVPSSLFVCAHFNAQR 216
Score = 54.5 bits (130), Expect = 5e-08
Identities = 31/216 (14%), Positives = 55/216 (25%), Gaps = 23/216 (10%)
Query: 552 SEFQCKNGKCIPAQWRCDHDEDCTDGSDEME----CGGFQCKNGTFQC--SSGHCIAAYF 605
K + HD D C +C CI
Sbjct: 14 DYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLL 73
Query: 606 RCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDET 665
CDG++DCRD SDE C S++ + C+ + T
Sbjct: 74 FCDGEKDCRDGSDEDPE--------TCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTIT 125
Query: 666 SSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRW 725
++ + P ++ + + + +F + P +
Sbjct: 126 AAHRKS--------FFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKG 177
Query: 726 MCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNG 761
+ D + +D S S F C +
Sbjct: 178 QSEGYGVICDFNLGDDDHADCKIVVPS-SLFVCAHF 212
Score = 47.6 bits (112), Expect = 1e-05
Identities = 30/184 (16%), Positives = 43/184 (23%), Gaps = 17/184 (9%)
Query: 102 CDHDNDCGDGSDEGKECHD-KYRTCSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEFN 158
HD D + + C E C+ +CI CDGE DC D SDE
Sbjct: 30 LTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP 89
Query: 159 CRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLR 218
C S ++ + C+ + R
Sbjct: 90 ET--------CSLNITHVGS------SYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPN 135
Query: 219 NTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYT 278
R + G LL+P+ G + D
Sbjct: 136 RVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFNLGDDDH 195
Query: 279 CACP 282
C
Sbjct: 196 ADCK 199
Score = 46.8 bits (110), Expect = 2e-05
Identities = 21/148 (14%), Positives = 35/148 (23%), Gaps = 9/148 (6%)
Query: 929 CDGTDDCGDNSDETSSLCSNMNCTSLHKYQC--DNGRCIASYQLCDGVDNCGDGSDENNL 986
D S +C H+ +C D CI CDG +C DGSDE+
Sbjct: 32 HDVDKKTIRQLKARISNLEEHHCDE-HESECRGDVPECIHDLLFCDGEKDCRDGSDEDP- 89
Query: 987 TLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSS-QF 1045
T + + C D +H + ++ +
Sbjct: 90 --ETCSLNITHVGSSYTGLATWTSCEDLN--PDHAIVTITAAHRKSFFPNRVWLRATLSY 145
Query: 1046 RCNNGKCIDYHLVCNKESDCEDDSDEPL 1073
+ +
Sbjct: 146 ELDEHDHTVSTTQLRGFYNFGKRELLLA 173
Score = 40.3 bits (93), Expect = 0.003
Identities = 35/244 (14%), Positives = 55/244 (22%), Gaps = 56/244 (22%)
Query: 754 SEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNW 813
K + HD D
Sbjct: 14 DYLAKKLHDIEEEYNKLTHDVDKKTIRQLKA----------------------------- 44
Query: 814 RCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLS-------EL 866
R + E+ E +C+ CI CDG++DCRD S L
Sbjct: 45 RISNLEEHHCDEHE-----SECRGD-----VPECIHDLLFCDGEKDCRDGSDEDPETCSL 94
Query: 867 NGTFQCSSGHCIAAYFRCDGDRD--CRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVE 924
N T SS +A + C+ + +P + H
Sbjct: 95 NITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTV 154
Query: 925 QSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGV-----DNCGD 979
+ G + G L + + CD + C V C
Sbjct: 155 STTQLRGFYNFGKRELL---LAPLKGQSEGYGVICDFNLGDDDHADCKIVVPSSLFVCAH 211
Query: 980 GSDE 983
+ +
Sbjct: 212 FNAQ 215
Score = 39.9 bits (92), Expect = 0.004
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 13/116 (11%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 157
CD + DC DGSDE E TCS + T+ C D + +
Sbjct: 71 DLLFCDGEKDCRDGSDEDPE------TCSLNITHVGSSYTGLATW-----TSCEDLNPDH 119
Query: 158 NCRDGSDEGKECHDKYRT--CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
+ ++ R ++ + T G + G R
Sbjct: 120 AIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPL 175
Score = 35.2 bits (80), Expect = 0.10
Identities = 29/215 (13%), Positives = 54/215 (25%), Gaps = 19/215 (8%)
Query: 132 CQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRK 191
+ I + Y+ D + R + E C + C + +CI
Sbjct: 17 AKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGD-----VPECIHD 71
Query: 192 TYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRPYDIHVYHPLKQLAYPNPCDGDNGGCSH 251
CDGE DC D SDE + + + C+ N +
Sbjct: 72 LLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTS----------CEDLNPDHAI 121
Query: 252 LCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQ 311
+ + R + + + N + +
Sbjct: 122 VT----ITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKG 177
Query: 312 KCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSF 346
+ + CD D +D + P+ F
Sbjct: 178 QSEGYGVICDFNLGDDDHADCKIVVPSSLFVCAHF 212
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 67.6 bits (164), Expect = 2e-12
Identities = 33/163 (20%), Positives = 46/163 (28%), Gaps = 14/163 (8%)
Query: 287 LDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQCRAGSF 346
L R + +C + +H CGG D +CI + CDG DC +G DE C F
Sbjct: 43 LRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKF 101
Query: 347 QCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWKCDGEPDCK 406
D D C E + + + + E D
Sbjct: 102 IGDVCF-----------DHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDED 150
Query: 407 DGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGD 449
+ PA D V +FD D
Sbjct: 151 ESEVSMPADGE--YSFADHRLTIHPPEEDGLGLVGEFDGYNFD 191
Score = 65.6 bits (159), Expect = 8e-12
Identities = 32/213 (15%), Positives = 57/213 (26%), Gaps = 17/213 (7%)
Query: 496 DELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQ 555
D+L + K + + +E ED C E E Q
Sbjct: 8 DKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELED------PSCDEHEHQ 61
Query: 556 CK--NGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDC 613
C + +CI + CD DC +G DE +C F R +
Sbjct: 62 CGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLA 121
Query: 614 RDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNS-------DETS 666
+ S E + + E S DG D+ ++
Sbjct: 122 FESSSIAAFFTPIADLHVHIEI--ESETDEDESEVSMPADGEYSFADHRLTIHPPEEDGL 179
Query: 667 SLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDE 699
L + + + + + ++ C +
Sbjct: 180 GLVGEFDGYNFDRFVGHIVHELSEEVCAEFIFH 212
Score = 56.0 bits (134), Expect = 2e-08
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 8/97 (8%)
Query: 698 DELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQ 757
D+L + K + + +E ED C E E Q
Sbjct: 8 DKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELED------PSCDEHEHQ 61
Query: 758 CK--NGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKC 792
C + +CI + CD DC +G DE +C
Sbjct: 62 CGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAG 98
Score = 53.3 bits (127), Expect = 1e-07
Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 17/149 (11%)
Query: 100 WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEF 157
D GS + + +C E C + +CI K + CDG +DC + DE
Sbjct: 30 DRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEK 89
Query: 158 NCRDGSDEGKECHDKYRTCSSEEFACQN--FKCI-RKTYHCDGEDDCGDRSDEFNCSRDY 214
+C T + ++F C R+ H + + F D
Sbjct: 90 DCT------------LPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIADL 137
Query: 215 RVLRNTTHRPYDIHVYHPLKQLAYPNPCD 243
V + + + D
Sbjct: 138 HVHIEIESETDEDESEVSMPADGEYSFAD 166
Score = 53.3 bits (127), Expect = 1e-07
Identities = 30/215 (13%), Positives = 52/215 (24%), Gaps = 15/215 (6%)
Query: 410 DEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWER 469
D+ + + + PK + +C + +
Sbjct: 8 DKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEE------LEDPSCDEHEHQ 61
Query: 470 CPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKN--NRCIPKRWMCDF 527
C G + +CI K CDG +DCR+G DE P F + C +R +
Sbjct: 62 C-GGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDK-FIGDVCFDHCTKRR--PEH 117
Query: 528 ENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGS---DEMECG 584
+ S A A + D + D E
Sbjct: 118 MTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEED 177
Query: 585 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDE 619
G + + + C +
Sbjct: 178 GLGLVGEFDGYNFDRFVGHIVHELSEEVCAEFIFH 212
Score = 51.4 bits (122), Expect = 4e-07
Identities = 37/218 (16%), Positives = 63/218 (28%), Gaps = 27/218 (12%)
Query: 383 EFKCASNGRCILNSWKCDGEPDCKDGS-DEDPAMCHNRPCDKDTEFAC--RNGHCIPKLW 439
+ + + L + D + K GS + CD+ E C + CI KL+
Sbjct: 16 KITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEH-EHQCGGDDPQCISKLF 74
Query: 440 VCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELP 499
VCD NDC + DE ++CT + K++ D C E
Sbjct: 75 VCDGHNDCRNGEDE-------KDCT---------LPTKAGDKFIGDVCFDHCTKRRPEHM 118
Query: 500 QNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNG 559
+ F + E++ + E G Y ++
Sbjct: 119 TLAFESSSIAAFFTPIADL---HVHIEIESETDEDESEVSMPADGEY-SFADHRLTIHPP 174
Query: 560 KCIPAQWRCD---HDEDCTDGSDEMECGGFQCKNGTFQ 594
+ + ++ D G E C F
Sbjct: 175 EEDGLGLVGEFDGYNFDRFVGHIVHELSEEVCAEFIFH 212
Score = 48.7 bits (115), Expect = 4e-06
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 132 CQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFAC--QNFKCI 189
+ I + + + GS + + +C E C + +CI
Sbjct: 11 IERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCI 70
Query: 190 RKTYHCDGEDDCGDRSDEFNCSRDY 214
K + CDG +DC + DE +C+
Sbjct: 71 SKLFVCDGHNDCRNGEDEKDCTLPT 95
Score = 47.9 bits (113), Expect = 8e-06
Identities = 28/183 (15%), Positives = 42/183 (22%), Gaps = 19/183 (10%)
Query: 814 RCDHDEDCTDGSDETECGGFQCKNGTFQCS--SGHCIAAYFRCDGDRDCRDLS-ELNGTF 870
R +E C QC CI+ F CDG DCR+ E +
Sbjct: 36 RIRKAGSLRHRVEE--LEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD--- 90
Query: 871 QCSSGHCIAAYFRCDGDRD-CRDLSDEMNCPPRYPGGRFC---------PEYKFQCASTH 920
C+ F D D C E + + +
Sbjct: 91 -CTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDE 149
Query: 921 LCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDG 980
E S DG D+ + + R + + C +
Sbjct: 150 DESEVSMPADGEYSFADHRLTIHPPEEDGLGLVGEFDGYNFDRFVGHIVHELSEEVCAEF 209
Query: 981 SDE 983
Sbjct: 210 IFH 212
Score = 46.8 bits (110), Expect = 2e-05
Identities = 33/216 (15%), Positives = 55/216 (25%), Gaps = 29/216 (13%)
Query: 636 KFQCASTHLCVEQSELCDGTDDCGDNS-DETSSLCSNMNCTSLH--------KCIPKWLF 686
K + +H+ + D S + +C +CI K
Sbjct: 16 KITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFV 75
Query: 687 CDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFEND-CGDQSDEAEDLCA 745
CDG +DCR+G DE C +++ D D C + E L
Sbjct: 76 CDGHNDCRNGEDEK-------------DCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAF 122
Query: 746 GAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMK 805
+ + + + + D + M G I E +
Sbjct: 123 ESSSIAAFF----TPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPE--E 176
Query: 806 WNAAASNWRCDHDEDCTDGSDETECGGFQCKNGTFQ 841
++ D G E C F
Sbjct: 177 DGLGLVGEFDGYNFDRFVGHIVHELSEEVCAEFIFH 212
Score = 44.8 bits (105), Expect = 8e-05
Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 8/113 (7%)
Query: 1002 SQYTCS--NHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCI---DYH 1056
++ C + +CI + +C+ +DC + DE C C H
Sbjct: 58 HEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEH 117
Query: 1057 LVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL--TGYYCECNTGY 1107
+ ES ++ ++E+ + ++ G Y +
Sbjct: 118 MTLAFESSSIAAFF-TPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRL 169
Score = 39.8 bits (92), Expect = 0.003
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 98 KGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCI-RKTYHCDGEDDCGDRSDE 156
K ++CD NDC +G DE K+C + C R+ H + +
Sbjct: 72 KLFVCDGHNDCRNGEDE-KDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAF 130
Query: 157 F----NCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCG 202
F + + E + S +F R T H ED G
Sbjct: 131 FTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEEDGLG 180
Score = 37.9 bits (87), Expect = 0.015
Identities = 28/186 (15%), Positives = 53/186 (28%), Gaps = 31/186 (16%)
Query: 883 RCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAST-HLCVEQSELCDGTDDCGDNSDE 941
R R +E+ P C E++ QC C+ + +CDG +DC + DE
Sbjct: 36 RIRKAGSLRHRVEELEDPS-------CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88
Query: 942 TSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELY 1001
C+ K+ D D+C E+ +
Sbjct: 89 KD--CTLPTKAG-DKFIGDVCF-----------DHCTKRRPEHMTLAFESSSI------A 128
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNK 1061
+ +T + +D ++S + + + + LV
Sbjct: 129 AFFTPIADLHVHIEIESETDEDESEVSMPADGEYS---FADHRLTIHPPEEDGLGLVGEF 185
Query: 1062 ESDCED 1067
+ D
Sbjct: 186 DGYNFD 191
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 62.3 bits (152), Expect = 2e-12
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 544 GAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583
G+ QC EF C N +CI +W+CD D DC D SDE
Sbjct: 1 GSPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 62.3 bits (152), Expect = 2e-12
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 746 GAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785
G+ QC EF C N +CI +W+CD D DC D SDE
Sbjct: 1 GSPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 56.5 bits (137), Expect = 2e-10
Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 375 CDLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCH 417
C EF C +N RCI WKCDG+ DC D SDE PA+CH
Sbjct: 2 SPPQCQPGEFAC-ANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 53.5 bits (129), Expect = 2e-09
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 502 CPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCA 543
P + +F C N+RCI +RW CD +NDC D SDEA LC
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 53.5 bits (129), Expect = 2e-09
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 704 CPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCA 745
P + +F C N+RCI +RW CD +NDC D SDEA LC
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 53.1 bits (128), Expect = 3e-09
Identities = 20/38 (52%), Positives = 24/38 (63%)
Query: 423 KDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQ 460
+ EFAC N CI + W CD DNDC D+SDE +C Q
Sbjct: 7 QPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQ 44
Score = 51.9 bits (125), Expect = 8e-09
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
C EFAC N +CI++ + CDG++DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 51.9 bits (125), Expect = 8e-09
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 174 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 210
C EFAC N +CI++ + CDG++DC D SDE
Sbjct: 4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 51.1 bits (123), Expect = 1e-08
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 337 PARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
QC+ G F C N C CDG +DC D SDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 51.1 bits (123), Expect = 1e-08
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 587 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
QC+ G F C++ CI ++CDGD DC D SDE
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 48.1 bits (115), Expect = 2e-07
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
G F C++ CI ++CDGD DC D SDE
Sbjct: 9 GEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 46.9 bits (112), Expect = 5e-07
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 295 CVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C G+ C + +CI WKCDG+ DC D SDE
Sbjct: 2 SPPQCQPGEFACA--NSRCIQERWKCDGDNDCLDNSDE 37
Score = 46.1 bits (110), Expect = 7e-07
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 1036 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
C +F C N +CI C+ ++DC D+SDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 43.4 bits (103), Expect = 8e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 957 YQCDNGRCIASYQLCDGVDNCGDGSDENN 985
+ C N RCI CDG ++C D SDE
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAP 39
Score = 43.1 bits (102), Expect = 1e-05
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 834 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLS 864
QC+ G F C++ CI ++CDGD DC D S
Sbjct: 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNS 35
Score = 42.7 bits (101), Expect = 1e-05
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCS 670
C +F CA++ C+++ CDG +DC DNSDE +LC
Sbjct: 6 CQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 42.7 bits (101), Expect = 1e-05
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCS 947
C +F CA++ C+++ CDG +DC DNSDE +LC
Sbjct: 6 CQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPALCH 43
Score = 41.1 bits (97), Expect = 4e-05
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 474 TNYRCIPKWLFCDGKDDCRDGSDELPQNCPK 504
N RCI + CDG +DC D SDE P C +
Sbjct: 14 ANSRCIQERWKCDGDNDCLDNSDEAPALCHQ 44
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNCPK 706
+CI + CDG +DC D SDE P C +
Sbjct: 17 RCIQERWKCDGDNDCLDNSDEAPALCHQ 44
Score = 38.8 bits (91), Expect = 4e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCH 1034
++ C+N +CI C+ +DC D SDE
Sbjct: 9 GEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41
Score = 32.7 bits (75), Expect = 0.052
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 98 KGWLCDHDNDCGDGSDE 114
+ W CD DNDC D SDE
Sbjct: 21 ERWKCDGDNDCLDNSDE 37
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 61.8 bits (151), Expect = 2e-12
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG 584
CS EF C +G+CI + WRCD DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 61.8 bits (151), Expect = 2e-12
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 751 CSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG 786
CS EF C +G+CI + WRCD DC D SDE C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 53.3 bits (129), Expect = 2e-09
Identities = 21/34 (61%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 378 PCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDE 411
PC EF C +G CI +SW+CDG PDCKD SDE
Sbjct: 1 PCSAFEFHCL-SGECIHSSWRCDGGPDCKDKSDE 33
Score = 53.0 bits (128), Expect = 3e-09
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 176 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
CS+ EF C + +CI ++ CDG DC D+SDE NC+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 52.6 bits (127), Expect = 3e-09
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 588 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
C F C SG CI + +RCDG DC+D SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 51.8 bits (125), Expect = 6e-09
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 125 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
CS+ EF C + +CI ++ CDG DC D+SDE NC
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 50.6 bits (122), Expect = 2e-08
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 420 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 453
PC EF C +G CI W CD DC D SDE
Sbjct: 1 PCSAF-EFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 50.6 bits (122), Expect = 2e-08
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 341 CRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
C A F C +G C S+ CDG DC+D SDE++C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 49.5 bits (119), Expect = 4e-08
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
F C SG CI + +RCDG DC+D SDE NC
Sbjct: 5 FEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 47.2 bits (113), Expect = 3e-07
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEA 538
F C + CI W CD DC D+SDE
Sbjct: 7 FHCLSGECIHSSWRCDGGPDCKDKSDEE 34
Score = 47.2 bits (113), Expect = 3e-07
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDEA 740
F C + CI W CD DC D+SDE
Sbjct: 7 FHCLSGECIHSSWRCDGGPDCKDKSDEE 34
Score = 46.0 bits (110), Expect = 8e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1040 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
CS+ +F C +G+CI C+ DC+D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 44.9 bits (107), Expect = 2e-06
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C+ + HC +CI W+CDG DC D SDE
Sbjct: 2 CSAFEFHCL--SGECIHSSWRCDGGPDCKDKSDE 33
Score = 42.6 bits (101), Expect = 1e-05
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 835 CKNGTFQCSSGHCIAAYFRCDGDRDCRDLS 864
C F C SG CI + +RCDG DC+D S
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKS 31
Score = 41.8 bits (99), Expect = 2e-05
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 957 YQCDNGRCIASYQLCDGVDNCGDGSDENN 985
+ C +G CI S CDG +C D SDE N
Sbjct: 7 FHCLSGECIHSSWRCDGGPDCKDKSDEEN 35
Score = 37.9 bits (89), Expect = 5e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 997 PCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGC 1033
PC ++ C + +CI + C+ DC D SDE C
Sbjct: 1 PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 37.5 bits (88), Expect = 9e-04
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 664
C ++F C S C+ S CDG DC D SDE
Sbjct: 2 CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDE 33
Score = 37.5 bits (88), Expect = 9e-04
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 941
C ++F C S C+ S CDG DC D SDE
Sbjct: 2 CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDE 33
Score = 35.6 bits (83), Expect = 0.004
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 477 RCIPKWLFCDGKDDCRDGSDELPQNC 502
CI CDG DC+D SDE +NC
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDE--ENC 36
Score = 34.9 bits (81), Expect = 0.007
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNC 704
+CI CDG DC+D SDE +NC
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDE--ENC 36
Score = 32.2 bits (74), Expect = 0.068
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 98 KGWLCDHDNDCGDGSDE 114
W CD DC D SDE
Sbjct: 17 SSWRCDGGPDCKDKSDE 33
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 61.5 bits (150), Expect = 3e-12
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 544 GAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583
G ++C + +FQC+N +CIP+ WRCD D+DC D SDE +C
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 61.5 bits (150), Expect = 3e-12
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 746 GAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785
G ++C + +FQC+N +CIP+ WRCD D+DC D SDE +C
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 55.4 bits (134), Expect = 5e-10
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 335 SCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
S PA++C FQC N C PS CD DDC D SDE C
Sbjct: 2 SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 55.0 bits (133), Expect = 7e-10
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 414 AMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTK 465
+ C+KD +F CRN CIP +W CD D+DC D SDE +C K
Sbjct: 1 GSGPAKECEKD-QFQCRNERCIPSVWRCDEDDDCLDHSDE-------DDCPK 44
Score = 53.8 bits (130), Expect = 2e-09
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 174 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSR 212
+ C ++F C+N +CI + CD +DDC D SDE +C +
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 53.4 bits (129), Expect = 2e-09
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 583 CGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCP 623
+C+ FQC + CI + +RCD D DC D SDE +CP
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 52.7 bits (127), Expect = 4e-09
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
+ C ++F C+N +CI + CD +DDC D SDE +C
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 49.6 bits (119), Expect = 5e-08
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 870 FQCSSGHCIAAYFRCDGDRDCRDLSDEMNCP 900
FQC + CI + +RCD D DC D SDE +CP
Sbjct: 13 FQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43
Score = 49.2 bits (118), Expect = 7e-08
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 378 PCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDED 412
C +F+C N RCI + W+CD + DC D SDED
Sbjct: 7 ECEKDQFQC-RNERCIPSVWRCDEDDDCLDHSDED 40
Score = 48.0 bits (115), Expect = 2e-07
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 511 FQCKNNRCIPKRWMCDFENDCGDQSDEA 538
FQC+N RCIP W CD ++DC D SDE
Sbjct: 13 FQCRNERCIPSVWRCDEDDDCLDHSDED 40
Score = 48.0 bits (115), Expect = 2e-07
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 713 FQCKNNRCIPKRWMCDFENDCGDQSDEA 740
FQC+N RCIP W CD ++DC D SDE
Sbjct: 13 FQCRNERCIPSVWRCDEDDDCLDHSDED 40
Score = 46.5 bits (111), Expect = 5e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 1038 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
C QF+C N +CI C+++ DC D SDE
Sbjct: 6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 46.1 bits (110), Expect = 8e-07
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 295 CVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCP 337
C + Q C +++CIP W+CD + DC D SDE CP
Sbjct: 4 PAKECEKDQFQCR--NERCIPSVWRCDEDDDCLDHSDE-DDCP 43
Score = 44.6 bits (106), Expect = 3e-06
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 946 CSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENN 985
C ++QC N RCI S CD D+C D SDE++
Sbjct: 3 GPAKECEK-DQFQCRNERCIPSVWRCDEDDDCLDHSDEDD 41
Score = 42.6 bits (101), Expect = 1e-05
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 458 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPK 504
+ C K +C N RCIP CD DDC D SDE +CPK
Sbjct: 3 GPAKECEKDQFQC---RNERCIPSVWRCDEDDDCLDHSDE--DDCPK 44
Score = 42.3 bits (100), Expect = 2e-05
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 830 CGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLS 864
+C+ FQC + CI + +RCD D DC D S
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHS 37
Score = 41.1 bits (97), Expect = 5e-05
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHK 1035
Q+ C N +CI C+ DDC D SDE C K
Sbjct: 11 DQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44
Score = 39.2 bits (92), Expect = 3e-04
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNCPK 706
+CIP CD DDC D SDE +CPK
Sbjct: 19 RCIPSVWRCDEDDDCLDHSDE--DDCPK 44
Score = 38.0 bits (89), Expect = 5e-04
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETS 666
C + +FQC + C+ CD DDC D+SDE
Sbjct: 8 CEKDQFQCRNER-CIPSVWRCDEDDDCLDHSDEDD 41
Score = 38.0 bits (89), Expect = 5e-04
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETS 943
C + +FQC + C+ CD DDC D+SDE
Sbjct: 8 CEKDQFQCRNER-CIPSVWRCDEDDDCLDHSDEDD 41
Score = 32.6 bits (75), Expect = 0.049
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 98 KGWLCDHDNDCGDGSDE 114
W CD D+DC D SDE
Sbjct: 23 SVWRCDEDDDCLDHSDE 39
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 61.6 bits (150), Expect = 2e-11
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
+ C ++ G Y C C GF + ++C D+DEC CSQ+C NL G Y C C
Sbjct: 41 YVCNDLKIG--YECLCPDGFQL--VAQRRCEDIDECQDP-DTCSQLCVNLEGGYKCQCEE 95
Query: 1384 GFTLSD 1389
GF L
Sbjct: 96 GFQLDP 101
Score = 57.0 bits (138), Expect = 6e-10
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
HH + Y + + +EC CS VC +L Y C C
Sbjct: 4 HHHHHPMSD--YDIPTTENLYFQG-----AMGTNECLDNNGGCSYVCNDLKIGYECLCPD 56
Query: 1384 GFTLSD 1389
GF L
Sbjct: 57 GFQLVA 62
Score = 38.5 bits (90), Expect = 0.002
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 1064 DCEDDSDEPLH--CNVDECAKVETNQCGHKCVDTLTGYYCECNTGY 1107
D + +EC C + C D GY C C G+
Sbjct: 14 DIPTTENLYFQGAMGTNECL-DNNGGCSYVCNDLKIGYECLCPDGF 58
Score = 32.3 bits (74), Expect = 0.28
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 1077 VDECAKVETNQCGHKCVDTLTGYYCECNTGY 1107
+DEC + + C CV+ GY C+C G+
Sbjct: 69 IDECQ--DPDTCSQLCVNLEGGYKCQCEEGF 97
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 59.2 bits (144), Expect = 2e-11
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 545 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 583
CS ++F+C +G+CIP W CD D DC D SDE
Sbjct: 1 GSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 59.2 bits (144), Expect = 2e-11
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 747 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMEC 785
CS ++F+C +G+CIP W CD D DC D SDE
Sbjct: 1 GSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 54.6 bits (132), Expect = 9e-10
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNR 419
C +FKC ++GRCI W CDG+ DC D SDE A C N+
Sbjct: 5 CSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 52.7 bits (127), Expect = 4e-09
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 418 NRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQR 461
+ C T+F C +G CIP+ W CD DNDCGD SDE C +
Sbjct: 2 SHSCS-STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 52.3 bits (126), Expect = 6e-09
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 174 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCS 211
+CSS +F C + +CI + + CDG++DCGD SDE + +
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 51.9 bits (125), Expect = 6e-09
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
+CSS +F C + +CI + + CDG++DCGD SDE +
Sbjct: 3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 51.5 bits (124), Expect = 9e-09
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 338 ARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCD 376
+ C + F+C++G C P CDG +DC D SDE H +
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 51.1 bits (123), Expect = 1e-08
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 502 CPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCA 543
C T F+C + RCIP+ W CD +NDCGD SDE C
Sbjct: 2 SHSCSST-QFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 51.1 bits (123), Expect = 1e-08
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 704 CPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCA 745
C T F+C + RCIP+ W CD +NDCGD SDE C
Sbjct: 2 SHSCSST-QFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCT 42
Score = 50.4 bits (121), Expect = 3e-08
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 584 GGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 622
G C + F+C+SG CI ++ CDGD DC D SDE +
Sbjct: 1 GSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 48.4 bits (116), Expect = 1e-07
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 1037 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 1071
+ +CSS+QF+CN+G+CI H C+ ++DC D SDE
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 46.9 bits (112), Expect = 5e-07
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 868 GTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNC 899
F+C+SG CI ++ CDGD DC D SDE +
Sbjct: 8 TQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 45.7 bits (109), Expect = 1e-06
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 298 NCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
+C+ Q C +CIP W CDG+ DCGD SDE
Sbjct: 4 SCSSTQFKCN--SGRCIPEHWTCDGDNDCGDYSDE 36
Score = 43.8 bits (104), Expect = 5e-06
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 628 GGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSN 671
G C +F+C S C+ + CDG +DCGD SDET + C+N
Sbjct: 1 GSHSCSSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 43.8 bits (104), Expect = 5e-06
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 905 GGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSN 948
G C +F+C S C+ + CDG +DCGD SDET + C+N
Sbjct: 1 GSHSCSSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 43.8 bits (104), Expect = 5e-06
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 955 HKYQCDNGRCIASYQLCDGVDNCGDGSDENN 985
+++C++GRCI + CDG ++CGD SDE +
Sbjct: 8 TQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38
Score = 41.9 bits (99), Expect = 2e-05
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 831 GGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLS 864
G C + F+C+SG CI ++ CDGD DC D S
Sbjct: 1 GSHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYS 34
Score = 41.5 bits (98), Expect = 3e-05
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKEN 1037
+Q+ C++ +CI C+ +DCGD SDE + N
Sbjct: 8 TQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 41.5 bits (98), Expect = 4e-05
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 460 QRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPK 504
+C+ +C + RCIP+ CDG +DC D SDE NC
Sbjct: 2 SHSCSSTQFKC---NSGRCIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 40.7 bits (96), Expect = 7e-05
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNCPK 706
+CIP+ CDG +DC D SDE NC
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDETHANCTN 43
Score = 32.7 bits (75), Expect = 0.047
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 98 KGWLCDHDNDCGDGSDEGK-ECHDK 121
+ W CD DNDCGD SDE C ++
Sbjct: 20 EHWTCDGDNDCGDYSDETHANCTNQ 44
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo
sapiens}
Length = 87
Score = 59.6 bits (145), Expect = 4e-11
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
C NI G + C C +G+ + + K C D+DEC+ + C+Q+C N G Y C C+
Sbjct: 16 AVCKNIPGD--FECECPEGYRYNLKS-KSCEDIDECSE--NMCAQLCVNYPGGYTCYCDG 70
Query: 1384 --GFTLSD 1389
GF L+
Sbjct: 71 KKGFKLAQ 78
Score = 45.3 bits (108), Expect = 4e-06
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 1355 DVDECATGIHHC-SQVCTNLNGTYACSCNAGFTLSD 1389
DVDEC+ C + VC N+ G + C C G+ +
Sbjct: 2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNL 37
Score = 39.2 bits (92), Expect = 8e-04
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 1077 VDECAKVETNQCGHKCVDTLTGYYCECNTGY 1107
VDEC+ + C + + CEC GY
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGY 33
Score = 32.2 bits (74), Expect = 0.23
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 23/76 (30%)
Query: 1040 CSSSQFRCNNGKCID----YHLVCNK-------ESDCEDDSDEPLHCNVDECAKVETNQC 1088
CS C C + + C + CED +DEC+ N C
Sbjct: 6 CSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED---------IDECS---ENMC 53
Query: 1089 GHKCVDTLTGYYCECN 1104
CV+ GY C C+
Sbjct: 54 AQLCVNYPGGYTCYCD 69
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 57.0 bits (138), Expect = 1e-10
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 583 CGGFQCKNGTFQCSSGH-CIAAYFRCDGDRDCRDLSDEMNCPPRYPG 628
C + F+C+ G CI + +RCDG DCRD SDE CP R PG
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48
Score = 54.3 bits (131), Expect = 1e-09
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 375 CDLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDE 411
L C +FKCA CI + ++CDG DC+D SDE
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 53.5 bits (129), Expect = 2e-09
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 547 RQCSESEFQCKNGK-CIPAQWRCDHDEDCTDGSDEMEC 583
C+ ++F+C +G CI +++RCD DC D SDE C
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 53.5 bits (129), Expect = 2e-09
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 749 RQCSESEFQCKNGK-CIPAQWRCDHDEDCTDGSDEMEC 785
C+ ++F+C +G CI +++RCD DC D SDE C
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 52.3 bits (126), Expect = 6e-09
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 868 GTFQCSSGH-CIAAYFRCDGDRDCRDLSDEMNCPPRYPG 905
F+C+ G CI + +RCDG DCRD SDE CP R PG
Sbjct: 10 AQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48
Score = 51.6 bits (124), Expect = 1e-08
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 336 CPARQCRAGSFQCDNGN-CTPSASICDGVDDCRDGSDEKHCDLPCP 380
C + F+C +G+ C S CDGV DCRD SDE C P
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPP 47
Score = 49.2 bits (118), Expect = 7e-08
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 174 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNCS 211
C+S +F C + CI Y CDG DC D SDE C
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43
Score = 48.9 bits (117), Expect = 9e-08
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 123 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 159
C+S +F C + CI Y CDG DC D SDE C
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 47.7 bits (114), Expect = 2e-07
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 295 CVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPAR 339
V NCT Q C CI ++CDG DC D SDE CP R
Sbjct: 3 MVLNCTSAQFKCA-DGSSCINSRYRCDGVYDCRDNSDE-AGCPTR 45
Score = 44.6 bits (106), Expect = 3e-06
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 416 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDE 453
C +F C +G CI + CD DC D+SDE
Sbjct: 2 AMVLNC-TSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 43.9 bits (104), Expect = 6e-06
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 674 CTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKC 707
C CI CDG DCRD SDE CP
Sbjct: 14 CADGSSCINSRYRCDGVYDCRDNSDE--AGCPTR 45
Score = 43.5 bits (103), Expect = 9e-06
Identities = 18/48 (37%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 458 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKC 505
NCT +C CI CDG DCRD SDE CP
Sbjct: 2 AMVLNCTSAQFKC--ADGSSCINSRYRCDGVYDCRDNSDE--AGCPTR 45
Score = 42.7 bits (101), Expect = 2e-05
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 664
C +F+CA C+ CDG DC DNSDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 42.7 bits (101), Expect = 2e-05
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 941
C +F+CA C+ CDG DC DNSDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 40.8 bits (96), Expect = 7e-05
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 1032 GCHKENSTCSSSQFRCNNGK-CIDYHLVCNKESDCEDDSDE 1071
G C+S+QF+C +G CI+ C+ DC D+SDE
Sbjct: 1 GA--MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 40.4 bits (95), Expect = 1e-04
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 509 TDFQCKNNR-CIPKRWMCDFENDCGDQSDEA 538
F+C + CI R+ CD DC D SDEA
Sbjct: 10 AQFKCADGSSCINSRYRCDGVYDCRDNSDEA 40
Score = 40.4 bits (95), Expect = 1e-04
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 711 TDFQCKNNR-CIPKRWMCDFENDCGDQSDEA 740
F+C + CI R+ CD DC D SDEA
Sbjct: 10 AQFKCADGSSCINSRYRCDGVYDCRDNSDEA 40
Score = 39.6 bits (93), Expect = 2e-04
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 946 CSNMNCTSLHKYQCDNGR-CIASYQLCDGVDNCGDGSDENN 985
+NCTS ++C +G CI S CDGV +C D SDE
Sbjct: 2 AMVLNCTSAQ-FKCADGSSCINSRYRCDGVYDCRDNSDEAG 41
Score = 34.2 bits (79), Expect = 0.015
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 811 SNWRCDHDEDCTDGSDETEC 830
S +RCD DC D SDE C
Sbjct: 23 SRYRCDGVYDCRDNSDEAGC 42
Score = 32.7 bits (75), Expect = 0.048
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1002 SQYTCSN-HKCIDRAALCNHVDDCGDLSDELGC 1033
+Q+ C++ CI+ C+ V DC D SDE GC
Sbjct: 10 AQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42
Score = 30.0 bits (68), Expect = 0.56
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 98 KGWLCDHDNDCGDGSDE 114
+ CD DC D SDE
Sbjct: 23 SRYRCDGVYDCRDNSDE 39
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 56.5 bits (137), Expect = 1e-10
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 549 CSESEFQCK-NGKCIPAQWRCDHDEDCTDGSDEMECGG 585
C EFQC+ +G CIP +WRCD D DC D SDE C G
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41
Score = 56.5 bits (137), Expect = 1e-10
Identities = 22/38 (57%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 751 CSESEFQCK-NGKCIPAQWRCDHDEDCTDGSDEMECGG 787
C EFQC+ +G CIP +WRCD D DC D SDE C G
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41
Score = 55.4 bits (134), Expect = 4e-10
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 378 PCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDED 412
C EF+C +G CI W+CDG+ DC D SDE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37
Score = 49.2 bits (118), Expect = 6e-08
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 588 CKNGTFQC-SSGHCIAAYFRCDGDRDCRDLSDEMNCP 623
C FQC G CI +RCDGD DC D SDE +C
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 47.6 bits (114), Expect = 2e-07
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 175 TCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCSR 212
C ++EF C+ + CI + CDG+ DC D SDE +C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEG 41
Score = 47.3 bits (113), Expect = 3e-07
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 124 TCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNC 159
C ++EF C+ + CI + CDG+ DC D SDE +C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 46.9 bits (112), Expect = 4e-07
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 297 ANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPA 338
C + C D CIP W+CDG+ DC D SDE SC
Sbjct: 2 GGCHTDEFQCRL-DGLCIPLRWRCDGDTDCMDSSDE-KSCEG 41
Score = 46.1 bits (110), Expect = 7e-07
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 341 CRAGSFQC-DNGNCTPSASICDGVDDCRDGSDEKHCD 376
C FQC +G C P CDG DC D SDEK C+
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 45.7 bits (109), Expect = 1e-06
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 868 GTFQC-SSGHCIAAYFRCDGDRDCRDLSDEMNCP 900
FQC G CI +RCDGD DC D SDE +C
Sbjct: 7 DEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40
Score = 45.3 bits (108), Expect = 2e-06
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 413 PAMCHNRPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDE 453
P CH EF CR +G CIP W CD D DC D SDE
Sbjct: 1 PGGCH------TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 43.0 bits (102), Expect = 1e-05
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 505 CHETTDFQCK-NNRCIPKRWMCDFENDCGDQSDEA 538
CH +FQC+ + CIP RW CD + DC D SDE
Sbjct: 4 CHTD-EFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37
Score = 43.0 bits (102), Expect = 1e-05
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 707 CHETTDFQCK-NNRCIPKRWMCDFENDCGDQSDEA 740
CH +FQC+ + CIP RW CD + DC D SDE
Sbjct: 4 CHTD-EFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37
Score = 41.1 bits (97), Expect = 5e-05
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 1038 STCSSSQFRCN-NGKCIDYHLVCNKESDCEDDSDE 1071
C + +F+C +G CI C+ ++DC D SDE
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 40.3 bits (95), Expect = 8e-05
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM 672
C +FQC LC+ CDG DC D+SDE S C +
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS--CEGV 42
Score = 40.3 bits (95), Expect = 8e-05
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM 949
C +FQC LC+ CDG DC D+SDE S C +
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS--CEGV 42
Score = 39.2 bits (92), Expect = 2e-04
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 674 CTSLHKCIPKWLFCDGKDDCRDGSDELPQNCP 705
C CIP CDG DC D SDE ++C
Sbjct: 11 CRLDGLCIPLRWRCDGDTDCMDSSDE--KSCE 40
Score = 38.4 bits (90), Expect = 4e-04
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 463 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 503
C +C + + CIP CDG DC D SDE ++C
Sbjct: 4 CHTDEFQC--RLDGLCIPLRWRCDGDTDCMDSSDE--KSCE 40
Score = 38.0 bits (89), Expect = 5e-04
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 835 CKNGTFQC-SSGHCIAAYFRCDGDRDCRDLS 864
C FQC G CI +RCDGD DC D S
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSS 34
Score = 36.5 bits (85), Expect = 0.002
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 811 SNWRCDHDEDCTDGSDETECGG 832
WRCD D DC D SDE C G
Sbjct: 20 LRWRCDGDTDCMDSSDEKSCEG 41
Score = 36.1 bits (84), Expect = 0.003
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 957 YQC-DNGRCIASYQLCDGVDNCGDGSDENN 985
+QC +G CI CDG +C D SDE +
Sbjct: 9 FQCRLDGLCIPLRWRCDGDTDCMDSSDEKS 38
Score = 33.0 bits (76), Expect = 0.038
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 1002 SQYTC-SNHKCIDRAALCNHVDDCGDLSDELGC 1033
++ C + CI C+ DC D SDE C
Sbjct: 7 DEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 31.5 bits (72), Expect = 0.13
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 100 WLCDHDNDCGDGSDE 114
W CD D DC D SDE
Sbjct: 22 WRCDGDTDCMDSSDE 36
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 54.3 bits (131), Expect = 1e-09
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 547 RQCSESEFQCKNG-KCIPAQWRCDHDEDCTDGSDEMECGG 585
+ C S F C C+P +W CD D+DC DG+DE G
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 54.3 bits (131), Expect = 1e-09
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 749 RQCSESEFQCKNG-KCIPAQWRCDHDEDCTDGSDEMECGG 787
+ C S F C C+P +W CD D+DC DG+DE G
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 50.5 bits (121), Expect = 2e-08
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 379 CPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDP 413
C F C C+ W CDG+ DC DG+DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI 41
Score = 48.5 bits (116), Expect = 1e-07
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 336 CPARQCRAGSFQCDNGN-CTPSASICDGVDDCRDGSDEKHC 375
+ C SF C + C P +CDG DC DG+DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 47.0 bits (112), Expect = 4e-07
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 174 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNCS 211
+TC F+C C+ + + CDG+ DC D +DE +
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 47.0 bits (112), Expect = 5e-07
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 123 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 159
+TC F+C C+ + + CDG+ DC D +DE
Sbjct: 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 46.6 bits (111), Expect = 6e-07
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 416 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCT 464
+ C + F+C H C+P+ W+CD D DC D +DE N T
Sbjct: 2 SEGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
Score = 46.2 bits (110), Expect = 8e-07
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 298 NCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSC 336
C C G C+P W CDG++DC DG+DE ++
Sbjct: 6 TCGPSSFSCPG-THVCVPERWLCDGDKDCADGADESIAA 43
Score = 46.2 bits (110), Expect = 1e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 583 CGGFQCKNGTFQCSSGH-CIAAYFRCDGDRDCRDLSDEMNCP 623
G C +F C H C+ + CDGD+DC D +DE
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCT 675
C F C TH+CV + LCDG DC D +DE+ + N T
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
Score = 45.4 bits (108), Expect = 2e-06
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCT 952
C F C TH+CV + LCDG DC D +DE+ + N T
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
Score = 43.9 bits (104), Expect = 5e-06
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 509 TDFQCKN-NRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCS 550
+ F C + C+P+RW+CD + DC D +DE+ AG +
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADESI--AAGCLYNST 50
Score = 43.9 bits (104), Expect = 5e-06
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 711 TDFQCKN-NRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCS 752
+ F C + C+P+RW+CD + DC D +DE+ AG +
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADESI--AAGCLYNST 50
Score = 41.6 bits (98), Expect = 3e-05
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 868 GTFQCSSGH-CIAAYFRCDGDRDCRDLSDEMNCP 900
+F C H C+ + CDGD+DC D +DE
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 41.2 bits (97), Expect = 5e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1036 ENSTCSSSQFRCNNG-KCIDYHLVCNKESDCEDDSDEPLHCN 1076
E TC S F C C+ +C+ + DC D +DE +
Sbjct: 3 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 674 CTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKC 707
C H C+P+ CDG DC DG+DE C
Sbjct: 14 CPGTHVCVPERWLCDGDKDCADGADE--SIAAGC 45
Score = 40.1 bits (94), Expect = 2e-04
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 458 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKC 505
+ C CPG + C+P+ CDG DC DG+DE C
Sbjct: 2 SEGKTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADE--SIAAGC 45
Score = 37.7 bits (88), Expect = 8e-04
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 946 CSNMNCTSLHKYQCDNG-RCIASYQLCDGVDNCGDGSDENNLTLCT 990
C + C C+ LCDG +C DG+DE+ C
Sbjct: 2 SEGKTCGP-SSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL 46
Score = 37.4 bits (87), Expect = 0.001
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 830 CGGFQCKNGTFQCSSGH-CIAAYFRCDGDRDCRDLS 864
G C +F C H C+ + CDGD+DC D +
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGA 37
Score = 35.4 bits (82), Expect = 0.005
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 811 SNWRCDHDEDCTDGSDETECGG 832
W CD D+DC DG+DE+ G
Sbjct: 23 ERWLCDGDKDCADGADESIAAG 44
Score = 33.5 bits (77), Expect = 0.029
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 1002 SQYTCSN-HKCIDRAALCNHVDDCGDLSDELGCHKENSTCS 1041
S ++C H C+ LC+ DC D +DE +
Sbjct: 10 SSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
Score = 31.6 bits (72), Expect = 0.13
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 98 KGWLCDHDNDCGDGSDEGKEC 118
+ WLCD D DC DG+DE
Sbjct: 23 ERWLCDGDKDCADGADESIAA 43
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 55.8 bits (135), Expect = 2e-09
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
C + C C +G+I+D + C D+DEC G CS VC NL GT+ C C
Sbjct: 53 ADCDP---NTQASCECPEGYILD--DGFICTDIDECENG-GFCSGVCHNLPGTFECICGP 106
Query: 1384 GFTLS 1388
L+
Sbjct: 107 DSALA 111
Score = 53.9 bits (130), Expect = 9e-09
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
+ C + S YLC C +GF + +C C C N +C C
Sbjct: 14 YQCQPLDQTS-YLCVCAEGFAPIPHEPHRCQMFCNQ----TACPADCDP-NTQASCECPE 67
Query: 1384 GFTLSDGLS 1392
G+ L DG
Sbjct: 68 GYILDDGFI 76
Score = 37.0 bits (86), Expect = 0.009
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 1355 DVDECATGIHHCSQVCTNLN-GTYACSCNAGFTLSDGLSGVCKANDN 1400
VD C +C C L+ +Y C C GF C+ N
Sbjct: 3 PVDPCFRA--NCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCN 47
Score = 33.5 bits (77), Expect = 0.13
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 17/91 (18%)
Query: 1017 LCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 1076
+ + C ++ C + + + C G Y L C D
Sbjct: 35 IPHEPHRCQMFCNQTACPADCDPNTQASCECPEG----YILDDGFI--CTD--------- 79
Query: 1077 VDECAKVETNQCGHKCVDTLTGYYCECNTGY 1107
+DEC C C + + C C
Sbjct: 80 IDECE--NGGFCSGVCHNLPGTFECICGPDS 108
Score = 28.5 bits (64), Expect = 7.5
Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 21/91 (23%)
Query: 1021 VDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDEC 1080
VD C + E C +S C G + + ++ C+
Sbjct: 4 VDPCFRANCEYQCQ--PLDQTSYLCVCAEG----FAPIPHEPHRCQMFC----------- 46
Query: 1081 AKVETNQCGHKCVDTLTGYYCECNTGYNDDD 1111
C C T CEC GY DD
Sbjct: 47 ---NQTACPADCDPN-TQASCECPEGYILDD 73
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 53.3 bits (128), Expect = 3e-09
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 546 YRQCSESEFQCK-----NGKCIPAQWRCDHDEDCTDGSDEMECG 584
+ C +F+C +G+C P W CD DC DG DE CG
Sbjct: 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47
Score = 53.3 bits (128), Expect = 3e-09
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 748 YRQCSESEFQCK-----NGKCIPAQWRCDHDEDCTDGSDEMECG 786
+ C +F+C +G+C P W CD DC DG DE CG
Sbjct: 4 FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47
Score = 46.7 bits (111), Expect = 6e-07
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 378 PCPDLEFKCAS----NGRCILNSWKCDGEPDCKDGSDE 411
CP +F+C+ +G C W CDG PDC DG DE
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 44.0 bits (104), Expect = 5e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 121 KYRTCSSEEFACQNF-----KCIRKTYHCDGEDDCGDRSDEFNC 159
++ +C +F C +C + + CDG DC D DE+ C
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 44.0 bits (104), Expect = 5e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 172 KYRTCSSEEFACQNF-----KCIRKTYHCDGEDDCGDRSDEFNC 210
++ +C +F C +C + + CDG DC D DE+ C
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 43.2 bits (102), Expect = 9e-06
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 587 QCKNGTFQCSS-----GHCIAAYFRCDGDRDCRDLSDEMNC 622
C G F+CS G C + CDG DC D DE C
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 43.2 bits (102), Expect = 1e-05
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 297 ANCTQGQHHC---GGHDQKCIPWFWKCDGERDCGDGSDE 332
+C GQ C G +C P W CDG DC DG DE
Sbjct: 5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 42.9 bits (101), Expect = 1e-05
Identities = 19/44 (43%), Positives = 21/44 (47%)
Query: 332 EPMSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
E SCP Q R +G C P +CDG DC DG DE C
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 40.5 bits (95), Expect = 9e-05
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 415 MCHNRPCDKDTEFACR-----NGHCIPKLWVCDFDNDCGDDSDE 453
+ C +F C +G C P+ W+CD DC D DE
Sbjct: 1 ISEFGSCPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 40.2 bits (94), Expect = 1e-04
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 868 GTFQCSS-----GHCIAAYFRCDGDRDCRDLSDEMNC 899
G F+CS G C + CDG DC D DE C
Sbjct: 10 GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 39.4 bits (92), Expect = 2e-04
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 1036 ENSTCSSSQFRC-----NNGKCIDYHLVCNKESDCEDDSDE 1071
E +C QFRC +G+C +C+ DC+D DE
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 39.4 bits (92), Expect = 2e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 502 CPKCHETTDFQCK-----NNRCIPKRWMCDFENDCGDQSDEA 538
C F+C + C P+ W+CD DC D DE
Sbjct: 4 FGSCPPGQ-FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEW 44
Score = 39.4 bits (92), Expect = 2e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 704 CPKCHETTDFQCK-----NNRCIPKRWMCDFENDCGDQSDEA 740
C F+C + C P+ W+CD DC D DE
Sbjct: 4 FGSCPPGQ-FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEW 44
Score = 35.9 bits (83), Expect = 0.004
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 457 MCRQRNCTKGWERC--PGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 502
+ +C G RC P + C P+ CDG DC DG DE C
Sbjct: 1 ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGC 46
Score = 35.5 bits (82), Expect = 0.005
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 813 WRCDHDEDCTDGSDETECG 831
W CD DC DG DE CG
Sbjct: 29 WLCDGHPDCDDGRDEWGCG 47
Score = 34.8 bits (80), Expect = 0.008
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 945 LCSNMNCTSLH----KYQCDNGRCIASYQLCDGVDNCGDGSDENN 985
+ +C + +G C LCDG +C DG DE
Sbjct: 1 ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG 45
Score = 34.4 bits (79), Expect = 0.013
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNC 704
+C P+ CDG DC DG DE C
Sbjct: 23 ECYPQDWLCDGHPDCDDGRDE--WGC 46
Score = 33.6 bits (77), Expect = 0.025
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 632 CPEYKFQCASTH----LCVEQSELCDGTDDCGDNSDE 664
CP +F+C+ C Q LCDG DC D DE
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 33.6 bits (77), Expect = 0.025
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 909 CPEYKFQCASTH----LCVEQSELCDGTDDCGDNSDE 941
CP +F+C+ C Q LCDG DC D DE
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 33.6 bits (77), Expect = 0.028
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 834 QCKNGTFQCSS-----GHCIAAYFRCDGDRDCRDLS 864
C G F+CS G C + CDG DC D
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGR 41
Score = 30.9 bits (70), Expect = 0.26
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 1002 SQYTCSNHKCIDRAALCNHVDDCGDLSDELGC 1033
S+ ++ +C + LC+ DC D DE GC
Sbjct: 15 SEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 30.1 bits (68), Expect = 0.50
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 100 WLCDHDNDCGDGSDE 114
WLCD DC DG DE
Sbjct: 29 WLCDGHPDCDDGRDE 43
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A
2box_A
Length = 143
Score = 56.0 bits (135), Expect = 4e-09
Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 1324 HHCMNITGGSGYLCTCYQGFI-------IDKNNAKKCLDVDECATGIHHC--SQVCTNLN 1374
C N G Y C C G+ + C DVDEC++G H C S VC N
Sbjct: 59 SDCWNTEGS--YDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTV 116
Query: 1375 GTYACSCNAGFTLSDG 1390
G+Y+C C G+ G
Sbjct: 117 GSYSCRCRPGWKPRHG 132
Score = 48.3 bits (115), Expect = 2e-06
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 1334 GYLCTCYQGFIID----KNNAKKCLDVDECATGIHHC---SQVCTNLNGTYACSCNAGFT 1386
C C GF + C D++ECAT C N G+Y C C+ G+
Sbjct: 18 ATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYE 77
Query: 1387 LSDGLSGVCKANDN 1400
G ++N
Sbjct: 78 PVSGAKTFKNESEN 91
Score = 35.2 bits (81), Expect = 0.052
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 1032 GCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCG-- 1089
C +++S +++ RCN G ++ C+D ++ECA + CG
Sbjct: 8 WCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDD---------INECATLSKVSCGKF 58
Query: 1090 HKCVDTLTGYYCECNTGYNDDDIGTVSPSSN 1120
C +T Y C C+ GY + +
Sbjct: 59 SDCWNTEGSYDCVCSPGYEPVSGAKTFKNES 89
Score = 30.9 bits (70), Expect = 1.4
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 1004 YTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCS----SSQFRCNNG---KCIDYH 1056
++ + C+ +++C LS + S C S C+ G
Sbjct: 27 FSSFSEIITTPMETCDDINECATLSK--VSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKT 84
Query: 1057 LVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH--KCVDTLTGYYCECNTGYNDDDIG 1113
E+ C+D VDEC+ +QC C +T+ Y C C G+
Sbjct: 85 FKNESENTCQD---------VDECS-SGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGI 133
Score = 28.6 bits (64), Expect = 7.9
Identities = 11/36 (30%), Positives = 12/36 (33%), Gaps = 4/36 (11%)
Query: 1355 DVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDG 1390
D CA C N AC CN GF+
Sbjct: 1 DSRGCARW-CPQDSSCVN---ATACRCNPGFSSFSE 32
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain,
disease mutation, extracellular matrix, polymorphism,
cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 55.4 bits (134), Expect = 7e-09
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCS-QVCTNLNGTYACSCN 1382
LC +GF + D+DEC C C N G++ C C
Sbjct: 93 PAVNTSEYK--ILCPGGEGFRPNPIT-VILEDIDECQELPGLCQGGKCINTFGSFQCRCP 149
Query: 1383 AGFTLSD 1389
G+ L++
Sbjct: 150 TGYYLNE 156
Score = 53.5 bits (129), Expect = 4e-08
Identities = 8/66 (12%), Positives = 14/66 (21%), Gaps = 4/66 (6%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
G C+ G + K + C + + C
Sbjct: 53 IRPRGDNGD--TACSNEIGVGVSKAS--CCCSLGKAWGTPCEMCPAVNTSEYKILCPGGE 108
Query: 1384 GFTLSD 1389
GF +
Sbjct: 109 GFRPNP 114
Score = 52.4 bits (126), Expect = 9e-08
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNA 1383
+C+N G Y+C C F ++ C+D + NG ACS
Sbjct: 15 GNCVNTPGS--YICDCPPDFELN-PTRVGCVDTRSGN---CYLDIRPRGDNGDTACSNEI 68
Query: 1384 GFTLSDG 1390
G +S
Sbjct: 69 GVGVSKA 75
Score = 46.2 bits (110), Expect = 1e-05
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 1355 DVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSD 1389
DV+EC S C N G+Y C C F L+
Sbjct: 2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36
Score = 33.5 bits (77), Expect = 0.25
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 14/97 (14%)
Query: 1018 CNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 1077
C + C N++ G + ED +
Sbjct: 77 CCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEG----FRPNPITVI-LED---------I 122
Query: 1078 DECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGT 1114
DEC ++ G KC++T + C C TGY ++
Sbjct: 123 DECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTR 159
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 51.6 bits (124), Expect = 1e-08
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C + CG H +CIP W+CDGE DC G DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 51.2 bits (123), Expect = 1e-08
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 549 CSESEFQCKNG--KCIPAQWRCDHDEDCTDGSDEMECG 584
C E C +CIP WRCD + DC G DE CG
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 51.2 bits (123), Expect = 1e-08
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 751 CSESEFQCKNG--KCIPAQWRCDHDEDCTDGSDEMECG 786
C E C +CIP WRCD + DC G DE CG
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 45.4 bits (108), Expect = 1e-06
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 379 CPDLEFKCASN-GRCILNSWKCDGEPDCKDGSDE 411
C E C ++ +CI SW+CDGE DC G DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 45.4 bits (108), Expect = 1e-06
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 176 CSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEFNCS 211
C E +C +CI ++ CDGE+DC DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 125 CSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEFNCRD 161
C E +C +CI ++ CDGE+DC DE NC +
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39
Score = 42.3 bits (100), Expect = 2e-05
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 588 CKNGTFQCSSGH--CIAAYFRCDGDRDCRDLSDEMNCP 623
C+ C + CI +RCDG+ DC DE NC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 41.6 bits (98), Expect = 3e-05
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 341 CRAGSFQCDNGN--CTPSASICDGVDDCRDGSDEKHC 375
CR C + C P + CDG +DC G DE++C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 511 FQCKNN--RCIPKRWMCDFENDCGDQSDEA 538
C + +CIP W CD ENDC DE
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35
Score = 39.6 bits (93), Expect = 2e-04
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 713 FQCKNN--RCIPKRWMCDFENDCGDQSDEA 740
C + +CIP W CD ENDC DE
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35
Score = 39.3 bits (92), Expect = 2e-04
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 868 GTFQCSSGH--CIAAYFRCDGDRDCRDLSDEMNCP 900
C + CI +RCDG+ DC DE NC
Sbjct: 4 HEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 38.1 bits (89), Expect = 5e-04
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 426 EFACRNGH--CIPKLWVCDFDNDCGDDSDE 453
E +C CIP W CD +NDC DE
Sbjct: 5 EISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 34.6 bits (80), Expect = 0.009
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 1040 CSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDE 1071
C + C ++ +CI C+ E+DC+ DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 34.6 bits (80), Expect = 0.009
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 463 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 503
C C + +CIP CDG++DC G DE +NC
Sbjct: 1 CRIHEISCGAHST-QCIPVSWRCDGENDCDSGEDE--ENCG 38
Score = 34.2 bits (79), Expect = 0.013
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 632 CPEYKFQCAS-THLCVEQSELCDGTDDCGDNSDETSSLCSN 671
C ++ C + + C+ S CDG +DC DE + C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN--CGN 39
Score = 34.2 bits (79), Expect = 0.013
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 909 CPEYKFQCAS-THLCVEQSELCDGTDDCGDNSDETSSLCSN 948
C ++ C + + C+ S CDG +DC DE + C N
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN--CGN 39
Score = 33.9 bits (78), Expect = 0.019
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 813 WRCDHDEDCTDGSDETECG 831
WRCD + DC G DE CG
Sbjct: 20 WRCDGENDCDSGEDEENCG 38
Score = 33.5 bits (77), Expect = 0.019
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 678 HKCIPKWLFCDGKDDCRDGSDELPQNCP 705
+CIP CDG++DC G DE +NC
Sbjct: 13 TQCIPVSWRCDGENDCDSGEDE--ENCG 38
Score = 32.3 bits (74), Expect = 0.050
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 835 CKNGTFQCSSGH--CIAAYFRCDGDRDCRDLS 864
C+ C + CI +RCDG+ DC
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGE 32
Score = 31.9 bits (73), Expect = 0.083
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 960 DNGRCIASYQLCDGVDNCGDGSDENN 985
+ +CI CDG ++C G DE N
Sbjct: 11 HSTQCIPVSWRCDGENDCDSGEDEEN 36
Score = 30.0 bits (68), Expect = 0.38
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 1003 QYTCSN--HKCIDRAALCNHVDDCGDLSDELGC 1033
+ +C +CI + C+ +DC DE C
Sbjct: 5 EISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 28.9 bits (65), Expect = 0.88
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 100 WLCDHDNDCGDGSDE 114
W CD +NDC G DE
Sbjct: 20 WRCDGENDCDSGEDE 34
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 51.7 bits (124), Expect = 1e-08
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 548 QCSESEFQCK-----NGKCIPAQWRCDHDEDCTDGSDEMECG 584
+C +F+C +G+C P W CD DC DG DE CG
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45
Score = 51.7 bits (124), Expect = 1e-08
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 750 QCSESEFQCK-----NGKCIPAQWRCDHDEDCTDGSDEMECG 786
+C +F+C +G+C P W CD DC DG DE CG
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45
Score = 46.7 bits (111), Expect = 5e-07
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 378 PCPDLEFKCAS----NGRCILNSWKCDGEPDCKDGSDE 411
CP +F+C+ +G C W CDG PDC DG DE
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 46.3 bits (110), Expect = 8e-07
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 584 GGFQCKNGTFQCSS-----GHCIAAYFRCDGDRDCRDLSDEMNCPP 624
G +C G F+CS G C + CDG DC D DE C
Sbjct: 1 GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 44.4 bits (105), Expect = 4e-06
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 299 CTQGQHHCGGHDQ---KCIPWFWKCDGERDCGDGSDEPMSCPA 338
C GQ C +C P W CDG DC DG DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE-WGCGT 46
Score = 44.4 bits (105), Expect = 4e-06
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 124 TCSSEEFAC-----QNFKCIRKTYHCDGEDDCGDRSDEFNC 159
C +F C + +C + + CDG DC D DE+ C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 44.4 bits (105), Expect = 4e-06
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 175 TCSSEEFAC-----QNFKCIRKTYHCDGEDDCGDRSDEFNC 210
C +F C + +C + + CDG DC D DE+ C
Sbjct: 4 RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 42.1 bits (99), Expect = 3e-05
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 333 PMSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
CP Q R +G C P +CDG DC DG DE C
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 42.1 bits (99), Expect = 3e-05
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 868 GTFQCSS-----GHCIAAYFRCDGDRDCRDLSDEMNCPP 901
G F+CS G C + CDG DC D DE C
Sbjct: 8 GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 39.8 bits (93), Expect = 1e-04
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 1037 NSTCSSSQFRC-----NNGKCIDYHLVCNKESDCEDDSDE 1071
+S C QFRC +G+C +C+ DC+D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 39.4 bits (92), Expect = 2e-04
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 418 NRPCDKDTEFACR-----NGHCIPKLWVCDFDNDCGDDSDE 453
+ C +F C +G C P+ W+CD DC D DE
Sbjct: 2 SSRCPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 39.0 bits (91), Expect = 3e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 509 TDFQCKNNRCIPKRWMCDFENDCGDQSDEA 538
++ + C P+ W+CD DC D DE
Sbjct: 13 SEPPGAHGECYPQDWLCDGHPDCDDGRDEW 42
Score = 39.0 bits (91), Expect = 3e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 711 TDFQCKNNRCIPKRWMCDFENDCGDQSDEA 740
++ + C P+ W+CD DC D DE
Sbjct: 13 SEPPGAHGECYPQDWLCDGHPDCDDGRDEW 42
Score = 37.5 bits (87), Expect = 0.001
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 469 RCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 503
P + C P+ CDG DC DG DE C
Sbjct: 13 SEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGCG 45
Score = 36.3 bits (84), Expect = 0.003
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 679 KCIPKWLFCDGKDDCRDGSDELPQNCP 705
+C P+ CDG DC DG DE C
Sbjct: 21 ECYPQDWLCDGHPDCDDGRDE--WGCG 45
Score = 34.0 bits (78), Expect = 0.016
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 813 WRCDHDEDCTDGSDETECG 831
W CD DC DG DE CG
Sbjct: 27 WLCDGHPDCDDGRDEWGCG 45
Score = 34.0 bits (78), Expect = 0.017
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 628 GGRFCPEYKFQCASTHL----CVEQSELCDGTDDCGDNSDE 664
G CP +F+C+ C Q LCDG DC D DE
Sbjct: 1 GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 34.0 bits (78), Expect = 0.017
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 905 GGRFCPEYKFQCASTHL----CVEQSELCDGTDDCGDNSDE 941
G CP +F+C+ C Q LCDG DC D DE
Sbjct: 1 GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 34.0 bits (78), Expect = 0.021
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 958 QCDNGRCIASYQLCDGVDNCGDGSDENN 985
+G C LCDG +C DG DE
Sbjct: 16 PGAHGECYPQDWLCDGHPDCDDGRDEWG 43
Score = 31.7 bits (72), Expect = 0.12
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 1002 SQYTCS-----NHKCIDRAALCNHVDDCGDLSDELGC 1033
Q+ CS + +C + LC+ DC D DE GC
Sbjct: 8 GQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 30.5 bits (69), Expect = 0.32
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 100 WLCDHDNDCGDGSDE 114
WLCD DC DG DE
Sbjct: 27 WLCDGHPDCDDGRDE 41
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 49.7 bits (119), Expect = 5e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 548 QCSESEFQCKNG-KCIPAQWRCDHDEDCTDGSDEMECG 584
+CS F C N KC+P C+ +DC + +DE CG
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43
Score = 49.7 bits (119), Expect = 5e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 750 QCSESEFQCKNG-KCIPAQWRCDHDEDCTDGSDEMECG 786
+CS F C N KC+P C+ +DC + +DE CG
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43
Score = 48.2 bits (115), Expect = 1e-07
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 376 DLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDED 412
D+ C F C + +C+ C+G DC + +DED
Sbjct: 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40
Score = 46.2 bits (110), Expect = 7e-07
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 336 CPARQCRAGSFQCDNGN-CTPSASICDGVDDCRDGSDEKHC 375
+C G F C N C P C+GVDDC + +DE +C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 45.1 bits (107), Expect = 2e-06
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 124 TCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 159
CS F C N KC+ + HC+G DDCG+++DE NC
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 45.1 bits (107), Expect = 2e-06
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 175 TCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 210
CS F C N KC+ + HC+G DDCG+++DE NC
Sbjct: 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 43.9 bits (104), Expect = 5e-06
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 583 CGGFQCKNGTFQCSSG-HCIAAYFRCDGDRDCRDLSDEMNC 622
+C G F C + C+ C+G DC + +DE NC
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 43.9 bits (104), Expect = 5e-06
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 297 ANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDE 332
C+ G CG + KC+P C+G DCG+ +DE
Sbjct: 5 VKCSLGYFPCG-NITKCLPQLLHCNGVDDCGNQADE 39
Score = 42.8 bits (101), Expect = 1e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 632 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 664
C F C + C+ Q C+G DDCG+ +DE
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 42.8 bits (101), Expect = 1e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 909 CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 941
C F C + C+ Q C+G DDCG+ +DE
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 40.5 bits (95), Expect = 7e-05
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 674 CTSLHKCIPKWLFCDGKDDCRDGSDELPQNC 704
C ++ KC+P+ L C+G DDC + +DE NC
Sbjct: 14 CGNITKCLPQLLHCNGVDDCGNQADE--DNC 42
Score = 40.5 bits (95), Expect = 9e-05
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 458 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 502
+ C+ G+ C +C+P+ L C+G DDC + +DE NC
Sbjct: 2 SQDVKCSLGYFPCG--NITKCLPQLLHCNGVDDCGNQADE--DNC 42
Score = 40.1 bits (94), Expect = 1e-04
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 868 GTFQCSSG-HCIAAYFRCDGDRDCRDLSDEMNC 899
G F C + C+ C+G DC + +DE NC
Sbjct: 10 GYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 39.3 bits (92), Expect = 2e-04
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 416 CHNRPCDKDTEFACRNG-HCIPKLWVCDFDNDCGDDSDE 453
+ C F C N C+P+L C+ +DCG+ +DE
Sbjct: 2 SQDVKCSLG-YFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 38.5 bits (90), Expect = 4e-04
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 1036 ENSTCSSSQFRCNNG-KCIDYHLVCNKESDCEDDSDE 1071
++ CS F C N KC+ L CN DC + +DE
Sbjct: 3 QDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 38.1 bits (89), Expect = 5e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 503 PKCHETTDFQCKN-NRCIPKRWMCDFENDCGDQSDEA 538
KC F C N +C+P+ C+ +DCG+Q+DE
Sbjct: 5 VKCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADED 40
Score = 38.1 bits (89), Expect = 5e-04
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 705 PKCHETTDFQCKN-NRCIPKRWMCDFENDCGDQSDEA 740
KC F C N +C+P+ C+ +DCG+Q+DE
Sbjct: 5 VKCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADED 40
Score = 36.6 bits (85), Expect = 0.002
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 946 CSNMNCTSLHKYQCDNG-RCIASYQLCDGVDNCGDGSDENN 985
++ C+ + + C N +C+ C+GVD+CG+ +DE+N
Sbjct: 2 SQDVKCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADEDN 41
Score = 34.3 bits (79), Expect = 0.012
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 830 CGGFQCKNGTFQCSSG-HCIAAYFRCDGDRDCRD 862
+C G F C + C+ C+G DC +
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGN 35
Score = 33.9 bits (78), Expect = 0.017
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 1003 QYTCSN-HKCIDRAALCNHVDDCGDLSDELGC 1033
+ C N KC+ + CN VDDCG+ +DE C
Sbjct: 11 YFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 33.1 bits (76), Expect = 0.034
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 811 SNWRCDHDEDCTDGSDETECG 831
C+ +DC + +DE CG
Sbjct: 23 QLLHCNGVDDCGNQADEDNCG 43
Score = 28.1 bits (63), Expect = 2.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 100 WLCDHDNDCGDGSDE 114
C+ +DCG+ +DE
Sbjct: 25 LHCNGVDDCGNQADE 39
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 56.1 bits (134), Expect = 7e-08
Identities = 29/161 (18%), Positives = 44/161 (27%), Gaps = 6/161 (3%)
Query: 325 DCGDGSDEPMSCPARQCRAGSFQCDNGNCTPS--ASICDGVD-DCRDGSDEKHCDLP-CP 380
C + + C+ ++ + +IC G D S C
Sbjct: 8 TCQLSNWSEWT-DCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQC 66
Query: 381 DLEFKCASNGRCILNSWKCDGEPDCKDGSDEDP-AMCHNRPCDKDTEFACRNGHCIPKLW 439
+F+C GRC+ C+G+ DC DGSDED D +
Sbjct: 67 GQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGY 126
Query: 440 VCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIP 480
D D Y + G R +
Sbjct: 127 NILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERL 167
Score = 51.5 bits (122), Expect = 2e-06
Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 14/195 (7%)
Query: 530 DCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQ--WRCD-HDEDCTDGSDEMECGGF 586
C + C C + +++ ++ C D S C
Sbjct: 8 TCQLSNWSEWTDCFP----CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQ 63
Query: 587 QCKNGTFQCS-SGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLC 645
FQC +G C+ + C+GD+DC D SDE +C C +Y+ S
Sbjct: 64 AQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQ--K 121
Query: 646 VEQSELCDGTDDCGDNSDETSSLCSNMNC-TSLHKCIPKWLFCDGKDDCRDGSDELPQNC 704
+D D + + + C+ G DE
Sbjct: 122 AALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCER---LYYGDDEKYFRK 178
Query: 705 PKCHETTDFQCKNNR 719
P F+ +
Sbjct: 179 PYNFLKYHFEALADT 193
Score = 48.8 bits (115), Expect = 1e-05
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 5/120 (4%)
Query: 485 CDGKD-DCRDGSDELPQNCPKCHETTDFQCKNN-RCIPKRWMCDFENDCGDQSDEAEDLC 542
C G D S + DFQCK RC+ + +C+ + DC D SDE +
Sbjct: 44 CSGDIWDQASCSSSTT-CVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCED 102
Query: 543 AGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQ--CKNGTFQCSSGHC 600
A + + + ED D GG NG ++
Sbjct: 103 VRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDS 162
Score = 46.1 bits (108), Expect = 8e-05
Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 3/112 (2%)
Query: 687 CDGKD-DCRDGSDELPQNCPKCHETTDFQCKNN-RCIPKRWMCDFENDCGDQSDEAEDLC 744
C G D S + DFQCK RC+ + +C+ + DC D SDE +
Sbjct: 44 CSGDIWDQASCSSSTT-CVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCED 102
Query: 745 AGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMT 796
A + + + ED D GG
Sbjct: 103 VRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGE 154
Score = 44.6 bits (104), Expect = 3e-04
Identities = 25/123 (20%), Positives = 37/123 (30%), Gaps = 13/123 (10%)
Query: 866 LNGTFQCSSGHCIAAY--FRCDGD-RDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLC 922
+ ++ S + C GD D S C + FQC T C
Sbjct: 24 QDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQA-----QCGQDFQCKETGRC 78
Query: 923 VEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSD 982
+++ +C+G DC D SDE + C I Q N D
Sbjct: 79 LKRHLVCNGDQDCLDGSDED-----DCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQED 133
Query: 983 ENN 985
+
Sbjct: 134 AQS 136
Score = 43.8 bits (102), Expect = 4e-04
Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 13/162 (8%)
Query: 692 DCRDGSDELPQNCPKCHETTDFQCKNNRCIPK--RWMCDFE-NDCGDQSDEAEDLCAGAY 748
C+ + +C C + ++ ++ K +C + D S +
Sbjct: 8 TCQLSNWSEWTDCFPCQDKK-YRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQA-- 64
Query: 749 RQCSESEFQCK-NGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWN 807
+FQCK G+C+ C+ D+DC DGSDE +C + + +
Sbjct: 65 --QCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCED--VRAIDEDCSQYEPIPGSQ 120
Query: 808 AAASNWRCDHDEDCTDGSDETECGGFQ--CKNGTFQCSSGHC 847
AA + ED D + GG NG ++
Sbjct: 121 KAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDS 162
Score = 43.1 bits (100), Expect = 8e-04
Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 13/130 (10%)
Query: 99 GWLCD-HDNDCGDGSDEGKECHDKYRTCSSEEFAC-QNFKCIRKTYHCDGEDDCGDRSDE 156
G +C D S ++F C + +C+++ C+G+ DC D SDE
Sbjct: 41 GTICSGDIWDQASCSSSTTCVRQ---AQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDE 97
Query: 157 FNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRV 216
+C D ++C S+ Y+ ++D D
Sbjct: 98 DDCEDVRAIDEDCSQYEPIPGSQ--------KAALGYNILTQEDAQSVYDASYYGGQCET 149
Query: 217 LRNTTHRPYD 226
+ N R
Sbjct: 150 VYNGEWRELR 159
Score = 41.9 bits (97), Expect = 0.002
Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 7/142 (4%)
Query: 299 CTQGQHHCGGHDQKCIPWFWKCDGE-RDCGDGSDEPMSCPARQCRAGSFQC-DNGNCTPS 356
C ++ Q C G+ D S +C + FQC + G C
Sbjct: 23 CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSS-TTCVRQAQCGQDFQCKETGRCLKR 81
Query: 357 ASICDGVDDCRDGSDEKHCD----LPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDED 412
+C+G DC DGSDE C+ + +++ + + + D + D
Sbjct: 82 HLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDAS 141
Query: 413 PAMCHNRPCDKDTEFACRNGHC 434
R
Sbjct: 142 YYGGQCETVYNGEWRELRYDST 163
Score = 34.6 bits (78), Expect = 0.31
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 124 TCSSEEFACQNFKCIRKTY--HCDGED-DCGDRSDEFNCRDGSDEGKECHDKYRTCSSEE 180
C +++ ++ K C G+ D S C + C +
Sbjct: 22 PCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQ-----------CGQDF 70
Query: 181 FACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRPYDIHVYH 231
+ +C+++ C+G+ DC D SDE +C + + +
Sbjct: 71 QCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQK 121
Score = 32.7 bits (73), Expect = 1.0
Identities = 23/174 (13%), Positives = 44/174 (25%), Gaps = 16/174 (9%)
Query: 732 DCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQ--WRCD-HDEDCTDGSDEMECGGF 788
C + C C + +++ ++ C D S C
Sbjct: 8 TCQLSNWSEWTDCFP----CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQ 63
Query: 789 QCKCVTMTRIVQMEVMKWNAAASNWRCDHDEDCTDGSDETECGGFQCKN----GTFQCSS 844
+K + C+ D+DC DGSDE +C + +
Sbjct: 64 AQCGQDFQCKETGRCLKRH-----LVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPG 118
Query: 845 GHCIAAYFRCDGDRDCRDLSELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMN 898
A + D + + + + + D C L +
Sbjct: 119 SQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDD 172
Score = 31.1 bits (69), Expect = 3.2
Identities = 31/181 (17%), Positives = 53/181 (29%), Gaps = 19/181 (10%)
Query: 934 DCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASY--QLCDGVDNCGDGSDENNLTLCTV 991
C ++ + C C KY+ + + +C G D + ++ T C
Sbjct: 8 TCQLSNWSEWTDCFP--CQD-KKYRHRSLLQPNKFGGTICSGDI--WDQASCSSSTTCVR 62
Query: 992 HTRVKPCELYSQYTCSNH-KCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNG 1050
+ + C +C+ R +CN DC D SDE C + C+
Sbjct: 63 -----QAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCED----VRAIDEDCSQY 113
Query: 1051 KCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDD 1110
+ I + + E D + + Y C Y D
Sbjct: 114 EPIPGSQKAALGYNI--LTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGD 171
Query: 1111 D 1111
D
Sbjct: 172 D 172
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 53.3 bits (128), Expect = 4e-07
Identities = 20/150 (13%), Positives = 30/150 (20%), Gaps = 20/150 (13%)
Query: 652 CDGTDDCGDNSDETSSLCSNMN-CTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHET 710
C + ++ FC D +G C+
Sbjct: 36 CLAWASAQAKALSKHQDFNSAVQLVEN--------FCRNPDGDEEG--------VWCY-V 78
Query: 711 TDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQ-WR 769
C E + GD DE D + N +
Sbjct: 79 AGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEG-ATATSEYQTFFNPATFGSGEAD 137
Query: 770 CDHDEDCTDGSDEMECGGFQCKCVTMTRIV 799
C S E + + RIV
Sbjct: 138 CGLRPLFEKKSLEDKTERELLESYIDGRIV 167
Score = 45.2 bits (107), Expect = 1e-04
Identities = 16/134 (11%), Positives = 26/134 (19%), Gaps = 12/134 (8%)
Query: 814 RCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCS 873
C + + Q C + D D +
Sbjct: 35 PCLAWASAQAKALSKHQ---DFNSA-VQLVENFC------RNPDGDEEGVWCYVAGKPGD 84
Query: 874 SGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTD 933
G+C Y + + D DE + R G + C
Sbjct: 85 FGYCDLNYCEEAVEEETGDGLDEDSD--RAIEGATATSEYQTFFNPATFGSGEADCGLRP 142
Query: 934 DCGDNSDETSSLCS 947
S E +
Sbjct: 143 LFEKKSLEDKTERE 156
Score = 44.9 bits (106), Expect = 2e-04
Identities = 30/186 (16%), Positives = 42/186 (22%), Gaps = 27/186 (14%)
Query: 328 DGSDEPMSCPARQCRAGSFQCDNG--NCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFK 385
+GS +S P QC Q G T C + + KH D +
Sbjct: 2 EGSSVNLSPPLEQCVPDRGQQYQGRLAVTTHGLPCLAWASAQAKALSKHQDFNSAV---Q 58
Query: 386 CASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDN 445
N C DE+ C+ G+C +
Sbjct: 59 LVEN--------FC-----RNPDGDEEGVWCYVAGKP------GDFGYCDLNYCEEAVEE 99
Query: 446 DCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLF-CDGKDDCRDGSDELPQNCPK 504
+ GD DE + R N C + S E
Sbjct: 100 ETGDGLDEDS--DRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTEREL 157
Query: 505 CHETTD 510
D
Sbjct: 158 LESYID 163
Score = 42.2 bits (99), Expect = 0.001
Identities = 13/89 (14%), Positives = 20/89 (22%), Gaps = 3/89 (3%)
Query: 294 TCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPM--SCPARQCRAGSFQCDNG 351
G C + + E + GDG DE + + N
Sbjct: 69 GDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNP 128
Query: 352 NCTPSA-SICDGVDDCRDGSDEKHCDLPC 379
S + C S E +
Sbjct: 129 ATFGSGEADCGLRPLFEKKSLEDKTEREL 157
Score = 40.2 bits (94), Expect = 0.005
Identities = 17/146 (11%), Positives = 26/146 (17%), Gaps = 25/146 (17%)
Query: 525 CDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG 584
C ++ S Q C DE
Sbjct: 36 CLAWASAQAKALSKHQDF--------NSAVQLVENFC------------RNPDGDEEGVW 75
Query: 585 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHL 644
+ G+C Y + + D DE + R G +
Sbjct: 76 CYVA---GKPGDFGYCDLNYCEEAVEEETGDGLDEDSD--RAIEGATATSEYQTFFNPAT 130
Query: 645 CVEQSELCDGTDDCGDNSDETSSLCS 670
C S E +
Sbjct: 131 FGSGEADCGLRPLFEKKSLEDKTERE 156
Score = 39.5 bits (92), Expect = 0.008
Identities = 21/146 (14%), Positives = 30/146 (20%), Gaps = 32/146 (21%)
Query: 929 CDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTL 988
C + ++ Q C DE +
Sbjct: 36 CLAWASAQAKALSKHQDFNSAV-------QLVENFC------------RNPDGDEEGVW- 75
Query: 989 CTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGC-HKENSTCSSSQFRC 1047
C V Y N+ ++ GD DE E +T +S
Sbjct: 76 C----YVAGKPGDFGYCDLNYCEEAV------EEETGDGLDEDSDRAIEGATATSEYQTF 125
Query: 1048 NNGKCID-YHLVCNKESDCEDDSDEP 1072
N C E S E
Sbjct: 126 FNPATFGSGEADCGLRPLFEKKSLED 151
Score = 39.5 bits (92), Expect = 0.008
Identities = 14/90 (15%), Positives = 19/90 (21%), Gaps = 4/90 (4%)
Query: 340 QCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDL----PCPDLEFKCASNGRCILN 395
C D G C + ++ DG DE +
Sbjct: 75 WCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSG 134
Query: 396 SWKCDGEPDCKDGSDEDPAMCHNRPCDKDT 425
C P + S ED D
Sbjct: 135 EADCGLRPLFEKKSLEDKTERELLESYIDG 164
Score = 39.5 bits (92), Expect = 0.009
Identities = 16/102 (15%), Positives = 22/102 (21%), Gaps = 11/102 (10%)
Query: 484 FCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCA 543
FC D +G C+ C E + GD DE D
Sbjct: 63 FCRNPDGDEEG--------VWCY-VAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAI 113
Query: 544 GAYRQCSESEFQCKNGKCIPAQ-WRCDHDEDCTDGSDEMECG 584
+ N + C S E +
Sbjct: 114 EG-ATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTE 154
Score = 39.1 bits (91), Expect = 0.012
Identities = 20/151 (13%), Positives = 32/151 (21%), Gaps = 27/151 (17%)
Query: 853 RCDGDRDCRDLSEL-----NGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGR 907
C + + N Q C + D D + C G
Sbjct: 35 PCLAWASAQAKALSKHQDFNSAVQLVENFC------RNPDGDEEGVW----CYVAGKPGD 84
Query: 908 FCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIAS 967
F C ++ GD DE S + N S
Sbjct: 85 FGYCDLNYCE-----------EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGS 133
Query: 968 YQL-CDGVDNCGDGSDENNLTLCTVHTRVKP 997
+ C S E+ + + +
Sbjct: 134 GEADCGLRPLFEKKSLEDKTERELLESYIDG 164
Score = 38.3 bits (89), Expect = 0.017
Identities = 19/145 (13%), Positives = 30/145 (20%), Gaps = 28/145 (19%)
Query: 485 CDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAG 544
C + + Q+ + Q N C D E+
Sbjct: 36 CLAWASAQAKALSKHQDF-----NSAVQLVENFCRN--------------PDGDEEGV-- 74
Query: 545 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG---GFQCKNGTFQCSSGHCI 601
C + G C +E+ DG DE G + +
Sbjct: 75 ---WCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATF 131
Query: 602 AAY-FRCDGDRDCRDLSDEMNCPPR 625
+ C S E
Sbjct: 132 GSGEADCGLRPLFEKKSLEDKTERE 156
Score = 37.9 bits (88), Expect = 0.025
Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 9/123 (7%)
Query: 99 GWLCDHDNDCGDGSDE-GKECHDKYRTCS-------SEEFACQNFKCIRKTYHCDGEDDC 150
G C + ++ + + +E + + + +
Sbjct: 33 GLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNY 92
Query: 151 GDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRK-TYHCDGEDDCGDRSDEFN 209
+ + E DG DE + + T +SE N C +S E
Sbjct: 93 CEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDK 152
Query: 210 CSR 212
R
Sbjct: 153 TER 155
Score = 36.8 bits (85), Expect = 0.052
Identities = 17/156 (10%), Positives = 30/156 (19%), Gaps = 30/156 (19%)
Query: 398 KCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYM 457
C + + + D ++ C D DE
Sbjct: 35 PCLAWASAQAKALS-------KHQDFNSAVQLVENFC------------RNPDGDEEGVW 75
Query: 458 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTD--FQCKN 515
C + C + +++ DG DE + T N
Sbjct: 76 CYVAGKPGDFGYCD--------LNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFN 127
Query: 516 NRCIPK-RWMCDFENDCGDQSDEAEDLCAGAYRQCS 550
C +S E +
Sbjct: 128 PATFGSGEADCGLRPLFEKKSLEDKTERELLESYID 163
Score = 34.8 bits (80), Expect = 0.23
Identities = 18/154 (11%), Positives = 26/154 (16%), Gaps = 33/154 (21%)
Query: 567 RCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRY 626
C + + Q C + D D + C
Sbjct: 35 PCLAWASAQAKALSKHQ---DFNSA-VQLVENFC------RNPDGDEEGVW----CYVAG 80
Query: 627 PGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLH-------K 679
G F C ++ GD DE S +
Sbjct: 81 KPGDFGYCDLNYCE-----------EAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPA 129
Query: 680 CIPKWLF-CDGKDDCRDGSDELPQNCPKCHETTD 712
C + S E D
Sbjct: 130 TFGSGEADCGLRPLFEKKSLEDKTERELLESYID 163
Score = 33.7 bits (77), Expect = 0.56
Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 100 WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 159
+ + GDG DE + + T +SE N GE DCG R
Sbjct: 93 CEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGS-----GEADCGLRPLFEKK 147
Query: 160 RDGSDEGKECHDKYRT 175
+E + Y
Sbjct: 148 SLEDKTERELLESYID 163
Score = 31.0 bits (70), Expect = 3.2
Identities = 7/93 (7%), Positives = 18/93 (19%), Gaps = 1/93 (1%)
Query: 1018 CNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 1077
C + ++ F N + + C D L+
Sbjct: 36 CLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEE-GVWCYVAGKPGDFGYCDLNYCE 94
Query: 1078 DECAKVETNQCGHKCVDTLTGYYCECNTGYNDD 1110
+ + + + G +
Sbjct: 95 EAVEEETGDGLDEDSDRAIEGATATSEYQTFFN 127
Score = 29.8 bits (67), Expect = 8.5
Identities = 16/148 (10%), Positives = 26/148 (17%), Gaps = 35/148 (23%)
Query: 727 CDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECG 786
C ++ S Q C DE
Sbjct: 36 CLAWASAQAKALSKHQDF--------NSAVQLVENFC------------RNPDGDEEGVW 75
Query: 787 GFQCKCVTMTRIVQMEVMKWNAAASN-WRCDHDEDCTDGSDETECG---GFQCKNGTFQC 842
+ + N +E+ DG DE G +
Sbjct: 76 CYVAGK----------PGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTF 125
Query: 843 SSGHCIAAY-FRCDGDRDCRDLSELNGT 869
+ + C S + T
Sbjct: 126 FNPATFGSGEADCGLRPLFEKKSLEDKT 153
Score = 29.4 bits (66), Expect = 9.3
Identities = 23/154 (14%), Positives = 32/154 (20%), Gaps = 32/154 (20%)
Query: 883 RCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDET 942
C + + + S VE C + DE
Sbjct: 35 PCLAWASAQAKALSKHQ---------------DFNSAVQLVEN--FC-----RNPDGDEE 72
Query: 943 SSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYS 1002
C D G C +Y + GDG DE+
Sbjct: 73 GVWCYVAGK------PGDFGYCDLNYCEEAVEEETGDGLDED----SDRAIEGATATSEY 122
Query: 1003 QYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKE 1036
Q + A C S E +E
Sbjct: 123 QTFFNPATFGSGEADCGLRPLFEKKSLEDKTERE 156
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 48.9 bits (117), Expect = 1e-06
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCS-QVCTNLNGTYACSCNAGFTLSD 1389
C +G+ + +C D+DEC C +C N G++ C C +G TL
Sbjct: 87 QVDPICGKGYS--RIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDA 141
Score = 38.9 bits (91), Expect = 0.003
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 1355 DVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSD 1389
D+DEC + + VC N G++ C C++ TL
Sbjct: 3 DIDECESS-PCINGVCKNSPGSFICECSSESTLDP 36
Score = 37.7 bits (88), Expect = 0.008
Identities = 11/92 (11%), Positives = 19/92 (20%), Gaps = 26/92 (28%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVC------------- 1370
C N G ++C C +D C++ + C
Sbjct: 15 GVCKNSPGS--FICECSSESTLD-PTKTICIETIKGTCWQTVIDGRCEININGATLKSQC 71
Query: 1371 ----------TNLNGTYACSCNAGFTLSDGLS 1392
C G++ G
Sbjct: 72 CSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQ 103
Score = 31.2 bits (71), Expect = 1.2
Identities = 25/116 (21%), Positives = 34/116 (29%), Gaps = 18/116 (15%)
Query: 1008 NHKCID-RAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCID--YHLVCNK--- 1061
CI+ C G + S C SS C +C K
Sbjct: 38 KTICIETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYS 97
Query: 1062 ---ESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGT 1114
+ CED +DEC CV+T + C+C +G D G
Sbjct: 98 RIKGTQCED---------IDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGR 144
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 46.9 bits (112), Expect = 3e-05
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 1189 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 1248
L P GIT G ++F+ N IGK+ DG + ++P +TL
Sbjct: 98 PLPQPDSGPYGITEGLN-GDIWFTQLN-GDRIGKLTADG-TIYEY-DLPNKGSYPAFITL 153
Query: 1249 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFED-HIYWTDWNTKS 1306
L++ + + I + GK + + P +T D +++ +
Sbjct: 154 G-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPV--GITSGNDGALWFVEIMGNK 210
Query: 1307 INRAD 1311
I R
Sbjct: 211 IGRIT 215
Score = 40.8 bits (96), Expect = 0.003
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 7/124 (5%)
Query: 1189 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 1248
L P GIT G V+F+ I + G D A L +
Sbjct: 14 NLSIPDSGPYGITSSED-GKVWFTQHK-ANKISSLDQSG-RIKEFEVPTPD-AKVMCLIV 69
Query: 1249 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFEDHIYWTDWNTKSI 1307
+++ + + I + G + P+ L I++T N I
Sbjct: 70 S-SLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRI 127
Query: 1308 NRAD 1311
+
Sbjct: 128 GKLT 131
Score = 34.2 bits (79), Expect = 0.32
Identities = 14/122 (11%), Positives = 34/122 (27%), Gaps = 17/122 (13%)
Query: 1434 ALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAH 1493
+ D +++V+ I R G++ + AI
Sbjct: 192 GITSGN-DGALWFVEIMGNKIGR-I---TTTGEISEYDIPTPN----ARPHAITAG-KNS 241
Query: 1494 NIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASP 1553
I+ ++ ++ ND + + P I G +++A
Sbjct: 242 EIW--FTEWGA----NQIGRITNDNTIQEYQLQTENAEPHGITFGKD-GSVWFALKCKIG 294
Query: 1554 RI 1555
++
Sbjct: 295 KL 296
Score = 31.5 bits (72), Expect = 2.2
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 8/69 (11%)
Query: 1484 TAIAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGK 1543
I + + ++ ++ + N G+ + N +P I G
Sbjct: 149 AFITLGS-DNALW--FTENQN----NSIGRITNTGKLEEYPLPTNAAAPVGITSGND-GA 200
Query: 1544 MFWAETGAS 1552
+++ E +
Sbjct: 201 LWFVEIMGN 209
Score = 31.1 bits (71), Expect = 2.4
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 35 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI 94
IGK+ DG + ++P +TL L++ + + I + GK + +
Sbjct: 127 IGKLTADG-TIYEY-DLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPL 183
Query: 95 SGQ 97
Sbjct: 184 PTN 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 4e-05
Identities = 75/576 (13%), Positives = 149/576 (25%), Gaps = 178/576 (30%)
Query: 934 DCGDNSDETSSLCSNMNCTSLHKYQCDNGR------CIASYQLCDGVDNCGDGSDENN-- 985
DC D D S+ S + + + S Q + V + N
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLRINYK 92
Query: 986 ---------------LTLCTVHTRVKPC---ELYSQYTCSNHKCID--RAALCNHVDDCG 1025
+T + R + +++++Y S + R AL
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE------ 146
Query: 1026 DLSDE--------LGCHKE---NSTCSSSQFRCNN---------GKCID----------- 1054
L LG K C S + +C C
Sbjct: 147 -LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 1055 -YHLVCNKESDCEDDSDEPLHCNV--DECAKVETNQCGHKCVDTLTGYYCECNTGYNDD- 1110
Y + N S + S+ L + E ++ ++ C+ L +
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL------------LNV 253
Query: 1111 ---------DIGTVSPSSNKVL--TR-STVIYHVRIWSSNVLVMADVYS--TRGSVME-- 1154
++ K+L TR V + ++ + + T V
Sbjct: 254 QNAKAWNAFNLSC------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 1155 NRTVKMEVTKIPLCALDV--RSIKLDVAEL--DGTNR---------KTLKTAIQDPRGI- 1200
+ + +P L R + + +AE DG L T I+ +
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCDKLTTIIE--SSLN 364
Query: 1201 TLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT-RILTHEDDIAWPN--------------- 1244
L P F L + ++ +L+ + W +
Sbjct: 365 VLEPAEYRKMF--DRLS-----VFPPSAHIPTILLS----LIWFDVIKSDVMVVVNKLHK 413
Query: 1245 --ALTLDYFTERLYWADAHLDYIASVDLDGK-HKHIV----ISGQKVPHVFALTLFEDHI 1297
+ + +L+ ++ + H+ IV I + +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 1298 YW-TDWNTKSINRADKF--------NAREIQAGILHHCMNITGGSGYLCTC-----YQGF 1343
Y + K+I ++ + R ++ I H L T Y+ +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 1344 IIDKNNAKKCLDVD------ECATGIHHCSQVCTNL 1373
I D + + L + + T+L
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSK--YTDL 567
Score = 43.7 bits (102), Expect = 6e-04
Identities = 73/517 (14%), Positives = 140/517 (27%), Gaps = 152/517 (29%)
Query: 1061 KESDCEDDSDEPLHC----NVDECAKVETN------------QCGHKCVDTLTGYYCECN 1104
DC+D D P +D + + V N
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 1105 TGYNDDDIGTVS--PSSNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEV 1162
+ I T PS TR + R+++ N + K V
Sbjct: 91 YKFLMSPIKTEQRQPSMM---TRMYIEQRDRLYNDNQVF----------------AKYNV 131
Query: 1163 TKIPLCALDVRSIKLDVAELDGTNRKTLKTAIQDPRGITLH--PGIGYVYFSSW----NL 1216
+++ +L R+ L ++ + + + G G +W
Sbjct: 132 SRLQP-----------YLKL----RQALLE-LRPAKNVLIDGVLGSG----KTWVALDVC 171
Query: 1217 QAYIGKIGMDGS----NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG 1272
+Y + MD N + E + L +D + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 1273 KHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNAREIQAGILHHCMNITGG 1332
++ + + L L ++ N K+ + FN + IL +T
Sbjct: 232 AELRRLLKSKPYENCL-LVL--LNV----QNAKAW---NAFN---LSCKIL-----LT-- 271
Query: 1333 SGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLS 1392
T ++ + D +A + + HH + T + S
Sbjct: 272 -----TRFKQ-VTDFLSAATTTHI----SLDHH----------------SMTLTPDEVKS 305
Query: 1393 GVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYW----VD 1448
+ K L + P T+ R +S I D + W D
Sbjct: 306 LLLKY----LDCRPQDLPR-EVLTTNPR----RLS---IIAESIRDGLATWDNWKHVNCD 353
Query: 1449 SYDRNIRRSFMLEAQK-GQVQAGFGQDLGI--KSIGKLTAIAVDWIAHNIYWTVSDRSGS 1505
I S L + + + F L + S + I + + W +S
Sbjct: 354 KLTTIIESS--LNVLEPAEYRKMF-DRLSVFPPSA-HIPTILLS-----LIWFDVIKSDV 404
Query: 1506 KPKGKVMVAHNDGRYRRSLVSENLESPS----SIALD 1538
V+ + ++ SLV + + + SI L+
Sbjct: 405 M---VVV----NKLHKYSLVEKQPKESTISIPSIYLE 434
Score = 37.5 bits (86), Expect = 0.042
Identities = 81/565 (14%), Positives = 145/565 (25%), Gaps = 195/565 (34%)
Query: 999 ELYSQYTCSNHKCID--RAALCNHVDDCGDLSDE--------LGCHKE---NSTCSSSQF 1045
+++++Y S + R AL L LG K C S +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLE-------LRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 1046 RCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNT 1105
+C I + K + + E L +++ N
Sbjct: 177 QCKMDFKI--FWLNLKNCNSPETVLEML---QKLLYQIDPNWTS---------------- 215
Query: 1106 GYNDDDIGTVSPSSNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEVTKI 1165
D + + + + + + + +LV+ +V + +
Sbjct: 216 --RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-------AWN------ 260
Query: 1166 PLCALDVRSIKL----DVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIG 1221
A ++ L D + T D +TL P +
Sbjct: 261 ---AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY------- 310
Query: 1222 KIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG 1281
+ + L E P L++ E + A D V+ D K I+ S
Sbjct: 311 -LDCRPQD----LPREVLTTNPRRLSI--IAESIRDGLATWDNWKHVNCD-KLTTIIESS 362
Query: 1282 QKV--P----HVF-ALTLFEDH---------IYWTDWNT------------KS-INRADK 1312
V P +F L++F + W D S + + K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1313 FNAREI---QAGILHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGI------ 1363
+ I + N L I+D N K D D+
Sbjct: 423 ESTISIPSIYLELKVKLENEY----AL----HRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1364 ----HHCSQ------------VCTNLN--------GTYACSCNAGF--TLSDGLSGVCKA 1397
HH V + + A + + TL
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-------- 526
Query: 1398 NDNKLTIVYSNGPEIRAYETHKRRFRDVISD-----ERRIEALD--IDPVDEIIYWVDSY 1450
++ Y+ + I D ER + A+ + ++E + Y
Sbjct: 527 --------------LKFYKPY-------ICDNDPKYERLVNAILDFLPKIEENLI-CSKY 564
Query: 1451 DRNIRRSFM-------LEAQKGQVQ 1468
+R + M EA K QVQ
Sbjct: 565 TDLLRIALMAEDEAIFEEAHK-QVQ 588
Score = 34.8 bits (79), Expect = 0.27
Identities = 32/196 (16%), Positives = 55/196 (28%), Gaps = 54/196 (27%)
Query: 64 DYFTERLYWADAHLDYIASVDLDGK-HKHIVISGQKGWLCDHDN--DCGDGSDEGKECHD 120
T + +L+ ++ + H+ IV DH N D D D
Sbjct: 422 KESTISIP--SIYLELKVKLENEYALHRSIV---------DHYNIPKTFDSDDLIPPYLD 470
Query: 121 KYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSD----EGKECHDKYRTC 176
+Y F + I +H + +R F D E K HD
Sbjct: 471 QY-------F----YSHI--GHHLKNIEH-PERMTLFR-MVFLDFRFLEQKIRHDSTAWN 515
Query: 177 SSEEFA--CQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTH--RPYDIHVYHP 232
+S Q K + Y CD N + R++ + ++
Sbjct: 516 ASGSILNTLQQLKFYKP-YICD------------NDPKYERLVNAILDFLPKIEENLICS 562
Query: 233 ----LKQLAYPNPCDG 244
L ++A +
Sbjct: 563 KYTDLLRIALMAEDEA 578
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 43.2 bits (102), Expect = 5e-05
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1331 GGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSD 1389
G + C C G+ + ++ + C+ C+ C G CSC G+ L D
Sbjct: 31 GIGSFSCDCRSGW--EGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGD 87
Score = 35.5 bits (82), Expect = 0.028
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 14/86 (16%)
Query: 1033 CHKENSTCSSSQFRCNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVET 1085
C + C +G CID + C C+ + + C+ ++
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE------VSFLNCS-LDN 61
Query: 1086 NQCGHKCVDTLTGYYCECNTGYNDDD 1111
C H C++ + C C GY D
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPGYKLGD 87
Score = 28.5 bits (64), Expect = 6.5
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 1352 KCLDVDECATGIHHCSQ--------VCTNLNGTYACSCNAGFT 1386
K +D D+C C + G+++C C +G+
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWE 44
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 40.5 bits (95), Expect = 9e-05
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 11/52 (21%)
Query: 1355 DVDECAT--------GIHHCSQVCTNLNGTYACSCNAGFTL-SDGLSGVCKA 1397
D+DECA+ C +C N G Y CSC G+ L D S C+A
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS--CQA 52
Score = 34.7 bits (80), Expect = 0.012
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 7/38 (18%)
Query: 1077 VDECA-------KVETNQCGHKCVDTLTGYYCECNTGY 1107
+DECA + QC H C + + GY+C C GY
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGY 41
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 44.2 bits (105), Expect = 2e-04
Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 7/124 (5%)
Query: 1189 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 1248
L P GIT+ G V+ + I I +DG T D A LT+
Sbjct: 9 NLTNQDTGPYGITVSDK-GKVWITQHK-ANMISCINLDG-KITEYPLPTPD-AKVMCLTI 64
Query: 1249 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFEDHIYWTDWNTKSI 1307
+++ + + I + G K + P+ I++T+ N I
Sbjct: 65 SS-DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRI 122
Query: 1308 NRAD 1311
R
Sbjct: 123 GRIT 126
Score = 43.9 bits (104), Expect = 2e-04
Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 7/124 (5%)
Query: 1189 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 1248
TL P GIT P G ++F+ N IG+I DG + ++P+ +TL
Sbjct: 93 TLPNPDSAPYGITEGPN-GDIWFTEMN-GNRIGRITDDG-KIREY-ELPNKGSYPSFITL 148
Query: 1249 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFEDHIYWTDWNTKSI 1307
L++ + + I + G I P +D +++ + I
Sbjct: 149 G-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKI 206
Query: 1308 NRAD 1311
R
Sbjct: 207 GRIT 210
Score = 41.9 bits (99), Expect = 0.001
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 1197 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLY 1256
P ITL ++F+ IG+I G + P +T + L+
Sbjct: 143 PSFITLGSD-NALWFTENQ-NNAIGRITESGD--ITEFKIPTPASGPVGITKGN-DDALW 197
Query: 1257 WADAHLDYIASVDLDGKHKHIVISGQKV-PHVFALTLFEDHIYWTDWNTKSINRAD 1311
+ + + I + G+ I PH +++T+W I R
Sbjct: 198 FVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLT 252
Score = 31.9 bits (73), Expect = 1.4
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 23/121 (19%)
Query: 1434 ALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQ--AGFGQDLGIKSIGKLTAIAVDWI 1491
L I D +++ ++ I R +KG ++ D I
Sbjct: 61 CLTISS-DGEVWFTENAANKIGR-I---TKKGIIKEYTLPNPDSA------PYGITEG-- 107
Query: 1492 AH-NIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETG 1550
+ +I+ ++ +G ++ +DG+ R + PS I L +++ E
Sbjct: 108 PNGDIW--FTEMNG----NRIGRITDDGKIREYELPNKGSYPSFITLGSD-NALWFTENQ 160
Query: 1551 A 1551
Sbjct: 161 N 161
Score = 30.4 bits (69), Expect = 4.7
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 35 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI 94
IG+I DG + ++P+ +TL L++ + + I + G I
Sbjct: 122 IGRITDDG-KIREY-ELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKI 178
Query: 95 SGQ 97
Sbjct: 179 PTP 181
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 5e-04
Identities = 83/547 (15%), Positives = 156/547 (28%), Gaps = 190/547 (34%)
Query: 1063 SDCEDDSDEPLHCNVDECAK--------VETNQCGHKCVDTLTGYYCECNTGY-NDDDIG 1113
++ DEP + K VE ++ G L E Y +DI
Sbjct: 45 TEGFAADDEPT-TPAELVGKFLGYVSSLVEPSKVGQFD-QVLNLCLTEFENCYLEGNDIH 102
Query: 1114 TV-----SPSSNKVLTRSTVI---YHVRI--------WSSNVLVMA-------------- 1143
+ + ++ +I RI S++ L A
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 1144 ------------DVYSTRGSVMENRTVKMEVTKIPLCALDVRSIK-----LDVAE-LDGT 1185
D+Y T ++ + T L + + K L++ E L+
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 1186 NRK----TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL----THE 1237
+ L + P I+ P IG + + + + A + +G L H
Sbjct: 223 SNTPDKDYLLSI---P--ISC-PLIGVIQLAHYVVTAKL--LGFTPGELRSYLKGATGHS 274
Query: 1238 DDI----------AWPN-------ALTLDYFTERLYW--ADAHLDY----IASVDLDGKH 1274
+ +W + A+T+ L++ + Y + L+
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITV------LFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 1275 KHIVISGQKVP----HVFALTL--FEDHIYWTDWNTKSINRADKFNAR---EIQAGI-LH 1324
++ + VP + LT +D++ +K N+ Q I L
Sbjct: 329 EN----NEGVPSPMLSISNLTQEQVQDYV-------------NKTNSHLPAGKQVEISLV 371
Query: 1325 ---HCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQ---VCTN------ 1372
+ ++G L G + AK +D+ + I S+ +N
Sbjct: 372 NGAKNLVVSGPPQSLY----GLNLTLRKAKAPSGLDQ--SRIPF-SERKLKFSNRFLPVA 424
Query: 1373 -------LNGTYACSCNAGFTLSDGLSGVCKANDNKLTI-VYS--NGPEIRAYETHKRRF 1422
L D + N + I VY +G ++R
Sbjct: 425 SPFHSHLLVPASD------LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG----- 473
Query: 1423 RDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGK 1482
+ ER ++ + PV W + + +L+ FG G +G
Sbjct: 474 -SIS--ERIVDCIIRLPVK----WETTTQFKA--THILD---------FGPG-GASGLGV 514
Query: 1483 LTAIAVD 1489
LT D
Sbjct: 515 LTHRNKD 521
Score = 38.9 bits (90), Expect = 0.019
Identities = 72/442 (16%), Positives = 104/442 (23%), Gaps = 197/442 (44%)
Query: 217 LRNTTHRPYDIHVYHP------------LKQLA---------YPNPCDGDNGGCSHLCLL 255
LR+ Y YH L +L + + +L
Sbjct: 173 LRDL----YQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN----------IL 216
Query: 256 SPVPGVDRAPDMYADARSPVSYTCACP----NQF--YLDPRDNKTC-VANCTQGQ---HH 305
+ PD P+S CP Q Y+ T + T G+ +
Sbjct: 217 EWLENPSNTPDKDYLLSIPIS----CPLIGVIQLAHYVV-----TAKLLGFTPGELRSYL 267
Query: 306 CG--GHDQ----------------------KCIPW-FWKCDGERDCGDGSDEPMSCPARQ 340
G GH Q K I F+ G
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF-------IG------------- 307
Query: 341 CRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWKCD 400
R N + SI ++D + ++ +P P +L+
Sbjct: 308 VRC---YEAYPNTSLPPSI---LEDSLENNE----GVPSP------------MLS----- 340
Query: 401 GEPDCKDGSDED-----PAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA 455
+ + E + P K E + NG K V G P
Sbjct: 341 ----ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG---AKNLVV-----SGP----PQ 384
Query: 456 YMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE-LPQNCPKCHE------- 507
+ + + G R IP F + K S+ LP P H
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSR-IP---FSERK---LKFSNRFLPVASP-FHSHLLVPAS 436
Query: 508 ---TTDFQCKNNRCIPKRWMC---DFENDCGDQSDEAEDLCAGAYRQCSES--EFQCKNG 559
D N K D + DL R S S E
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFD--------GSDL-----RVLSGSISERIV--- 480
Query: 560 KCI---PAQWRCDHDEDCTDGS 578
CI P +W E T
Sbjct: 481 DCIIRLPVKW-----ETTTQFK 497
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 41.9 bits (98), Expect = 0.001
Identities = 14/137 (10%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 1179 VAELDGTNRKTLKTAI---QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT 1235
+ ++D K + + P + + ++ + + G + + RI
Sbjct: 154 ILKIDTETDKVVDE-LTIGIQPTSLVMDKY-NKMWTIT-DGGYEGSPYGYEAPSLYRIDA 210
Query: 1236 HEDDI---------AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPH 1286
+ WP+ + L+ + LYW + + + + + +
Sbjct: 211 ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYY 270
Query: 1287 VFALTLFEDHIYWTDWN 1303
+ +Y D
Sbjct: 271 GLTVNPNNGEVYVADAI 287
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 41.7 bits (97), Expect = 0.001
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 1355 DVDECATGIHHCSQ--VCTNLNGTYACSCNAGFTLSDGLSGVCKAN 1398
CA H CS C + + C C A +T +G V + +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYT-GNGRQCVAEGS 48
Score = 31.7 bits (71), Expect = 1.7
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 1075 CNVDECAKVETN--QCGHKCVDTLTGYYCECNTGYNDD 1110
CA C D TG+ C C Y +
Sbjct: 3 LAQQTCANNRHQCSVHAE-CRDYATGFCCRCVANYTGN 39
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 41.4 bits (96), Expect = 0.003
Identities = 35/245 (14%), Positives = 53/245 (21%), Gaps = 43/245 (17%)
Query: 278 TCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCP 337
N L+ DN+ C C C C S CP
Sbjct: 138 DSVEDNHIVLNKDDNEECGDIC----PGTAKGKTNCPATVINGQFVERCWTHSHCQKVCP 193
Query: 338 ARQCRAGSFQCDNGNCTPS-ASICDGVDD------CRDGSDEKHCDLPCPDLEFKCASNG 390
C++ + C C DD CR+ + C CP +
Sbjct: 194 -TICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDW- 251
Query: 391 RCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDD 450
D C N ++ N CIP+ C
Sbjct: 252 ----RCVNFSFCQDLHHK-------CKNSRRQGCHQYVIHNNKCIPE---CPSGYTMNSS 297
Query: 451 SDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTD 510
+ CT CP + K + + C + +
Sbjct: 298 N---------LLCTPCLGPCPKVCHLLEGEKTIDSVTSAQEL-------RGCTVINGSLI 341
Query: 511 FQCKN 515
+
Sbjct: 342 INIRG 346
Score = 35.3 bits (80), Expect = 0.22
Identities = 35/247 (14%), Positives = 57/247 (23%), Gaps = 56/247 (22%)
Query: 811 SNWRCDHDEDCTDGSDETECGGFQCKNGTFQC-SSGHCIA------AYFRCDGDRDCRDL 863
N C T +C + HC C + C
Sbjct: 151 DNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHS 210
Query: 864 SELNGTFQCSS-GHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLC 922
L Q C+A CR+ + C P + ++C + C
Sbjct: 211 ECLGNCSQPDDPTKCVA----------CRNFYLDGRCVETCPPPYY-HFQDWRCVNFSFC 259
Query: 923 VEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSD 982
+ C + H+Y N +C + C G
Sbjct: 260 QDLHHKCKNS-----------------RRQGCHQYVIHNNKC---------IPECPSGYT 293
Query: 983 ENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSS 1042
N+ + PC C + +D + GC N +
Sbjct: 294 MNS-----SNLLCTPCLGPCPKVCHLLEG------EKTIDSVTSAQELRGCTVINGSLII 342
Query: 1043 SQFRCNN 1049
+ NN
Sbjct: 343 NIRGGNN 349
Score = 33.7 bits (76), Expect = 0.56
Identities = 30/239 (12%), Positives = 61/239 (25%), Gaps = 25/239 (10%)
Query: 445 NDCGDDSDEPAYMCRQRNCTKGWERCPG--KTNYRCIPKWLFCDGKDDCRDGSDELPQNC 502
+ D ++ + + + + + CPG K C + + C
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERC--------WTH 185
Query: 503 PKCHETTDFQCKNNRCIPKRWMCDFE---NDCGDQSDEAEDLCAGAY------RQCSESE 553
C + CK++ C + C E N C Y C
Sbjct: 186 SHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPY 245
Query: 554 FQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDC 613
+ ++ +C+ + C S C + N +C C + Y + C
Sbjct: 246 YHFQDWRCVNFSF-CQDLHHKCKNSRRQGCHQYVIHNN--KCIP-ECPSGYTMNSSNLLC 301
Query: 614 R--DLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCS 670
C Q + S + + ++ ++L
Sbjct: 302 TPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGL 360
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex,
blood coagulation, CL PAIR of basic residues, disulfide
bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}
Length = 317
Score = 40.5 bits (95), Expect = 0.003
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 1047 CNNGKCIDYH--LVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECN 1104
+NG C D C E + E +EC T+ C H C+ Y C C
Sbjct: 14 LHNGSCQDSIWGYTCTCSPGYEGSNCE---LAKNECHPERTDGCQHFCLPGQESYTCSCA 70
Query: 1105 TGY 1107
GY
Sbjct: 71 QGY 73
Score = 37.0 bits (86), Expect = 0.045
Identities = 18/103 (17%), Positives = 25/103 (24%), Gaps = 19/103 (18%)
Query: 815 CDHDEDCTDGSDETEC------GGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNG 868
C H+ C D C G C+ +C C E +
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT------DGCQHFCLPGQE-SY 65
Query: 869 TFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPE 911
T C+ G +R D D+ C R
Sbjct: 66 TCSCAQG------YRLGEDHKQCVPHDQCACGVLTSEKRAPDL 102
Score = 33.9 bits (78), Expect = 0.35
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 144 CDGEDDCGDRSDEFNCR--DGSDEGKECHDKYRTCSSEEFACQNFKCI--RKTYHCDGED 199
C C D + C G EG C C E C+ +++Y C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGY-EGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQ 71
Query: 200 DCGDRSDEFNC 210
D C
Sbjct: 72 GYRLGEDHKQC 82
Score = 33.5 bits (77), Expect = 0.56
Identities = 17/94 (18%), Positives = 26/94 (27%), Gaps = 2/94 (2%)
Query: 485 CDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAG 544
C C+D C +E ++ + N C P+R ++ C + CA
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGC-QHFCLPGQESYTCSCAQ 71
Query: 545 AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGS 578
YR E QC
Sbjct: 72 GYR-LGEDHKQCVPHDQCACGVLTSEKRAPDLQD 104
Score = 32.8 bits (75), Expect = 0.78
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 1331 GGSGYLCTCYQGFIIDKNNAKKC-LDVDECATGIH-HCSQVCTNLNGTYACSCNAGFTLS 1388
GY CTC G+ C L +EC C C +Y CSC G+ L
Sbjct: 22 SIWGYTCTCSPGY-----EGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLG 76
Query: 1389 DGLSGVCKANDNKLTIVYSNGPE 1411
+ + ++ S
Sbjct: 77 EDHKQCVPHDQCACGVLTSEKRA 99
Score = 32.8 bits (75), Expect = 0.90
Identities = 15/95 (15%), Positives = 20/95 (21%), Gaps = 14/95 (14%)
Query: 568 CDHDEDCTDGSDEMEC------GGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMN 621
C H+ C D C G C+ +C C +
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT------DGCQHFCLPGQESYT 66
Query: 622 CPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTD 656
C G E QC C +
Sbjct: 67 C--SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
Score = 32.0 bits (73), Expect = 1.4
Identities = 14/102 (13%), Positives = 24/102 (23%), Gaps = 17/102 (16%)
Query: 101 LCDHDNDCGDGSDEGK-ECHDKY--RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 157
C H+ C D C Y C + C + + C + +
Sbjct: 12 PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERT------DGCQHFCLPGQESY 65
Query: 158 NCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGED 199
C C YR + + +C +
Sbjct: 66 TC--------SCAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
Score = 31.6 bits (72), Expect = 2.2
Identities = 17/101 (16%), Positives = 23/101 (22%), Gaps = 21/101 (20%)
Query: 770 CDHDEDCTDGSDEMEC------GGFQCKCVTMTRIVQMEVMKWNAAASNWRCDHDEDCTD 823
C H+ C D C G C+ + C H C
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPER----------TDGCQH--FCLP 60
Query: 824 GSDETEC---GGFQCKNGTFQCSSGHCIAAYFRCDGDRDCR 861
G + C G++ QC A R
Sbjct: 61 GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101
Score = 30.8 bits (70), Expect = 3.4
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 28/119 (23%)
Query: 416 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTN 475
C ++PC NG C + + C + NC C +
Sbjct: 8 CISQPC-------LHNGSCQDSI--WGYTCTCSPGYEG-------SNCELAKNECHPERT 51
Query: 476 YRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQ 534
C + C G + C C + + +C+P +
Sbjct: 52 DGC---------QHFCLPGQES--YTCS-CAQGYRLGEDHKQCVPHDQCACGVLTSEKR 98
Score = 30.8 bits (70), Expect = 3.8
Identities = 20/132 (15%), Positives = 27/132 (20%), Gaps = 37/132 (28%)
Query: 649 SELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCH 708
S+ C C D+ C C G + NC
Sbjct: 10 SQPCLHNGSCQDSIWGY-------------TC-----------TCSPGYEG--SNC---- 39
Query: 709 ETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQW 768
E +C R ++ C + CA YR E QC
Sbjct: 40 ELAKNECHPERT------DGCQHFCLPGQESYTCSCAQGYR-LGEDHKQCVPHDQCACGV 92
Query: 769 RCDHDEDCTDGS 780
Sbjct: 93 LTSEKRAPDLQD 104
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion;
HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A
Length = 186
Score = 39.2 bits (90), Expect = 0.004
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGI--HHCSQVCTNLNGTYACSC 1381
++ C+C G + + + C E A + + ++VC N+ G Y C C
Sbjct: 107 VEYLSEIQS--AGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQC 164
Query: 1382 NAGFTLS 1388
GFT
Sbjct: 165 MEGFTFD 171
Score = 32.3 bits (72), Expect = 0.83
Identities = 10/66 (15%), Positives = 19/66 (28%)
Query: 1334 GYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSDGLSG 1393
Y C C +G+ + ++ + C + + CSC G +
Sbjct: 73 MYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEX 132
Query: 1394 VCKAND 1399
C
Sbjct: 133 XCTXTG 138
Score = 31.5 bits (70), Expect = 1.3
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 1325 HCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHH---------CSQVCTNLNG 1375
+ ++ + C C +G + N C + +EC
Sbjct: 17 QLVQMSNH--FXCMCNEGLVHLSENT--CEEXNECXXETLGXACGEFGQCIENPDPAQVN 72
Query: 1376 TYACSCNAGFTLSDG 1390
Y C C G+TL +
Sbjct: 73 MYXCGCIEGYTLXED 87
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 40.2 bits (94), Expect = 0.005
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 11/132 (8%)
Query: 503 PKCHETTDFQCKNNRCIPKRWMCDF-ENDCGDQSDEAED---LCAGAYRQCSESEFQCKN 558
P C T F + +R +C ++ G S + L + + C S +
Sbjct: 234 PGCLFFTFFSQEW-PKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCH 292
Query: 559 GKCIPAQWRCDHDEDCTDGSDEMEC-----GGFQCKNGTFQCSSGHCIAAYFRCDGDRDC 613
+ D C +C+ T+ + C +C +
Sbjct: 293 SSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYL-KLS 351
Query: 614 RDLSDEMNCPPR 625
+ S R
Sbjct: 352 SNGSPTKILHGR 363
Score = 40.2 bits (94), Expect = 0.006
Identities = 22/197 (11%), Positives = 38/197 (19%), Gaps = 41/197 (20%)
Query: 607 CDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDG--TDDCGDNSDE 664
C C + P+ C + +++S+ G C +
Sbjct: 230 CTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIP- 288
Query: 665 TSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKR 724
F + D C
Sbjct: 289 ---------VFCHSSFYHDTDFLGEELDIVAAKSH-----EAC----------------- 317
Query: 725 WMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQ-WRCDHDEDCTDGSDEM 783
+ C + A C+E + +C + H G
Sbjct: 318 -----QKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLR 372
Query: 784 ECG-GFQCKCVTMTRIV 799
C +C RIV
Sbjct: 373 LCKMDNECTTKIKPRIV 389
Score = 37.5 bits (87), Expect = 0.033
Identities = 18/158 (11%), Positives = 32/158 (20%), Gaps = 16/158 (10%)
Query: 440 VCDFDNDCGDDSDEP--------AYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDC 491
+C C + +C + G I K G
Sbjct: 229 ICTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPST-------RIKKSKALSGFSLQ 281
Query: 492 RDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSE 551
+ TDF + + + + C + A C+E
Sbjct: 282 SCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNE 341
Query: 552 SEFQCKNGKCIPAQ-WRCDHDEDCTDGSDEMECGGFQC 588
+ +C + H G C
Sbjct: 342 GKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNE 379
Score = 37.5 bits (87), Expect = 0.038
Identities = 21/175 (12%), Positives = 43/175 (24%), Gaps = 38/175 (21%)
Query: 705 PKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCI 764
P C T F + +R +C + +S + S C++ +
Sbjct: 234 PGCLFFTFFSQEW-PKESQRNLCLLKTS---ESGLPSTRIKKSKALSGFSLQSCRHSIPV 289
Query: 765 PAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNWRCDHDEDCTDG 824
HD D ++ C + CT+
Sbjct: 290 FCHSSFYHDTDFLGEELDIVAAKSHEAC-------------------------QKLCTNA 324
Query: 825 SDETECGGFQCKNGTFQCSSGHCIAAYFRCDG-DRDCRDLSELNGTFQCSSGHCI 878
C+ T+ + C +C +++ SG+ +
Sbjct: 325 VR--------CQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTL 371
Score = 35.2 bits (81), Expect = 0.21
Identities = 12/105 (11%), Positives = 21/105 (20%), Gaps = 8/105 (7%)
Query: 339 RQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCD------LPCPDLEFKCASNGRC 392
+ CR + + D + C + C + + C
Sbjct: 281 QSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTP-AQASC 339
Query: 393 ILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPK 437
KC +GS + C K
Sbjct: 340 NEGKGKCYL-KLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTK 383
Score = 34.4 bits (79), Expect = 0.32
Identities = 18/153 (11%), Positives = 34/153 (22%), Gaps = 20/153 (13%)
Query: 386 CASNGRCIL-----NSWKCD------GEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHC 434
C + C+ W + + G + ++ + +CR+
Sbjct: 230 CTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTR-IKKSKALSGFSLQSCRHSIP 288
Query: 435 IPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWE---RCPGKT----NYRCIPKWLFCDG 487
+ D D + + C K RC T C C
Sbjct: 289 VFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYL 348
Query: 488 KDDCRDGSDELPQNCPKCHETTDFQCKNNRCIP 520
K +GS + +
Sbjct: 349 K-LSSNGSPTKILHGRGGISGYTLRLCKMDNEC 380
Score = 34.4 bits (79), Expect = 0.37
Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 7/91 (7%)
Query: 123 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHDKYRTCSSEEFA 182
++C + T E D C+ C + R C +
Sbjct: 281 QSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKL------CTNAVR-CQFFTYT 333
Query: 183 CQNFKCIRKTYHCDGEDDCGDRSDEFNCSRD 213
C C + + R
Sbjct: 334 PAQASCNEGKGKCYLKLSSNGSPTKILHGRG 364
Score = 34.1 bits (78), Expect = 0.41
Identities = 18/172 (10%), Positives = 39/172 (22%), Gaps = 25/172 (14%)
Query: 884 CDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDG--TDDCGDNSDE 941
C C + P+ C + +++S+ G C +
Sbjct: 230 CTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPV 289
Query: 942 T-SSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCEL 1000
S + + + ++ C C + C+
Sbjct: 290 FCHSSFYHDTDFLGEELDIVAAKS---HEACQ--KLCTNAV---------------RCQF 329
Query: 1001 YSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKC 1052
++ YT + C + C + S H + C
Sbjct: 330 FT-YTPAQASCNEGKGKCYL-KLSSNGSPTKILHGRGGISGYTLRLCKMDNE 379
Score = 31.0 bits (70), Expect = 3.8
Identities = 9/95 (9%), Positives = 13/95 (13%), Gaps = 4/95 (4%)
Query: 1002 SQYTCSNH-KCIDRAALCNHVDDCGDLSDELGCHK---ENSTCSSSQFRCNNGKCIDYHL 1057
H D C K C + C +
Sbjct: 285 HSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKG 344
Query: 1058 VCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKC 1092
C + + LH
Sbjct: 345 KCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNE 379
Score = 29.8 bits (67), Expect = 7.7
Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 5/67 (7%)
Query: 102 CDHDNDCGDGSDEG---KECHDKYRTCSSEEFACQNFKCIRKTYHCDGED-DCGDRSDEF 157
+ D K C + R C + C C + G +
Sbjct: 302 LGEELDIVAAKSHEACQKLCTNAVR-CQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKIL 360
Query: 158 NCRDGSD 164
+ R G
Sbjct: 361 HGRGGIS 367
Score = 29.8 bits (67), Expect = 8.8
Identities = 15/132 (11%), Positives = 24/132 (18%), Gaps = 13/132 (9%)
Query: 821 CTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLS-ELNGTFQCSSGHCIA 879
G T + +G S C + + L +
Sbjct: 260 SESGLPSTRIKKSKALSGF---SLQSCRHSIP-VFCHSSFYHDTDFLGEELDIVAAKSHE 315
Query: 880 AYFR-CDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDN 938
A + C C+ + P C E K +C
Sbjct: 316 ACQKLCTNAVRCQFFT-------YTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISG 368
Query: 939 SDETSSLCSNMN 950
N
Sbjct: 369 YTLRLCKMDNEC 380
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 40.1 bits (93), Expect = 0.006
Identities = 44/288 (15%), Positives = 68/288 (23%), Gaps = 33/288 (11%)
Query: 275 VSYTCACPNQFYLDPRDNKTCVANCTQGQ----HHCGGHDQKCIPWFWKCDGERDCGDGS 330
+S+ C N + + + G Q+ F
Sbjct: 368 LSFNATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIV 427
Query: 331 DEPMSCPA---RQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCA 387
C Q S +C+NGN T +C C G C+ D
Sbjct: 428 QVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCR----CGPGWLGSQCECSEEDYRPSQQ 483
Query: 388 SNGRCILNSWKCDGEPDCKDG-----------SDEDPAMCHNRPCDKDTEFACRN-GHCI 435
C +C G C + C + C G C
Sbjct: 484 DECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS 543
Query: 436 PKLWVCDFD---NDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKW--LFCDGKDD 490
+CD D C + M G +C + P C+
Sbjct: 544 CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPT 603
Query: 491 CRDGSDELPQNCPKCHET-TDFQCKNNRCIPKRWMCDFENDCGDQSDE 537
C D + C +C + N C C E + + +
Sbjct: 604 CPDACTFKKE-CVECKKFDRGALHDENTCNRY---CRDEIESVKELKD 647
Score = 32.8 bits (74), Expect = 1.1
Identities = 47/288 (16%), Positives = 75/288 (26%), Gaps = 49/288 (17%)
Query: 869 TFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSEL 928
C + I C G + +S + R + + +
Sbjct: 371 NATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVT 430
Query: 929 CDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQ--LCD------GVDNCGDG 980
D C ++ S C+N N T ++C RC + C+ +
Sbjct: 431 FDCDCACQAQAEPNSHRCNNGNGT----FECGVCRCGPGWLGSQCECSEEDYRPSQQDEC 486
Query: 981 SDENNLTLCTVH------------------------TRVKPCELYSQYTCSNH-KCIDRA 1015
S +C+ C Y CS H +C
Sbjct: 487 SPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGD 546
Query: 1016 ALCN---HVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYH-----LVCNKESDCED 1067
LC+ C + C N S + +C G C+ C K C D
Sbjct: 547 CLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPD 606
Query: 1068 DSDEPLHC----NVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDD 1111
C D A + N C C D + +TG + +
Sbjct: 607 ACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVN 654
Score = 32.4 bits (73), Expect = 1.6
Identities = 46/306 (15%), Positives = 71/306 (23%), Gaps = 55/306 (17%)
Query: 758 CKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNWRCDH 817
C N + IP C + S +E C V ++ D
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDC 433
Query: 818 DEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCD---GDRDCRDLSELNGTFQCSS 874
D C ++ +C NG G C RC C E Q
Sbjct: 434 DCACQAQAEPNSH---RCNNGNGTFECGVC-----RCGPGWLGSQCECSEEDYRPSQQDE 485
Query: 875 GHCIAAYFRCDGDRDCRDLSDEMNCPPRYPG---GRFCPEYKFQCASTHLCVEQS----- 926
C +C L + C G G++C F C +
Sbjct: 486 CSPREGQPVCSQRGEC--LCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS 543
Query: 927 ------------ELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCI--------- 965
C+ T LCS +C+ G C+
Sbjct: 544 CGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRG-------KCECGSCVCIQPGSYGD 596
Query: 966 ------ASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCN 1019
C C + + L +T + C + A C
Sbjct: 597 TCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNCT 656
Query: 1020 HVDDCG 1025
+ ++
Sbjct: 657 YKNEDD 662
Score = 30.8 bits (69), Expect = 4.3
Identities = 27/165 (16%), Positives = 51/165 (30%), Gaps = 16/165 (9%)
Query: 959 CDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALC 1018
C N I + C G+ S ++ +V+ C + + + + +L
Sbjct: 374 CLNNEVIPGLKSCMGLKIGDTVS-------FSIEAKVRGCPQEKEKSFTIKPVGFKDSLI 426
Query: 1019 NHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCN---KESDCEDDSDEPLHC 1075
V D + + + C++ G C C S CE ++
Sbjct: 427 VQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVC-----RCGPGWLGSQCECSEEDYRPS 481
Query: 1076 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSN 1120
DEC+ E + + L G C C++ G +
Sbjct: 482 QQDECSPREGQPVCSQRGECLCG-QCVCHSSDFGKITGKYCECDD 525
Score = 30.1 bits (67), Expect = 7.0
Identities = 18/120 (15%), Positives = 28/120 (23%), Gaps = 6/120 (5%)
Query: 1005 TCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESD 1064
TC N++ I C + +S + + L+ D
Sbjct: 373 TCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFD 432
Query: 1065 CEDDSDEPLHCNVDECA----KVETNQCGHKCVDTLTGYYCECNTGYNDDDIGTVSPSSN 1120
C+ N C E C +C G CEC+
Sbjct: 433 CDCACQAQAEPNSHRCNNGNGTFECGVC--RCGPGWLGSQCECSEEDYRPSQQDECSPRE 490
Score = 29.7 bits (66), Expect = 10.0
Identities = 27/182 (14%), Positives = 48/182 (26%), Gaps = 13/182 (7%)
Query: 592 TFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSEL 651
C + I C G + +S + R + + +
Sbjct: 371 NATCLNNEVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVT 430
Query: 652 CDGTDDCGDNSDETSSLCSNMNCTSLH---KCIPKWL--FCD---GKDDCRDGSDELPQN 703
D C ++ S C+N N T +C P WL C+ + P+
Sbjct: 431 FDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPRE 490
Query: 704 CPKCHETTDFQCKNNRCI-PKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGK 762
+C +C+ G + + C + QC G
Sbjct: 491 GQPVCSQRG-ECLCGQCVCHSSDFGKI---TGKYCECDDFSCVRYKGEMCSGHGQCSCGD 546
Query: 763 CI 764
C+
Sbjct: 547 CL 548
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 35.5 bits (82), Expect = 0.006
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 20/67 (29%)
Query: 242 CDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVANCTQ 301
C+ NG C C S C+C + L + K+C
Sbjct: 2 CNIKNGRCEQFCKNSA----------------DNKVVCSCTEGYRLAE-NQKSCEP---A 41
Query: 302 GQHHCGG 308
CG
Sbjct: 42 VPFPCGR 48
Score = 29.0 bits (65), Expect = 1.5
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 1359 CATGIHHCSQVCTNL-NGTYACSCNAGFTL-SDGLS 1392
C C Q C N + CSC G+ L + S
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKS 37
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 39.4 bits (92), Expect = 0.008
Identities = 31/180 (17%), Positives = 40/180 (22%), Gaps = 43/180 (23%)
Query: 330 SDEPMSCPARQCRAGSFQCDNGNCTPSASICDGVDD----CRDGSDEKHCDLPCPDLEFK 385
+ +CP NG+ +P + D C G + LP
Sbjct: 11 TSTAHACPYPMA------PPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAV 64
Query: 386 CASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDN 445
C +G C DC D E+ G K
Sbjct: 65 CQKDGSWDRPMPACSIV-DCGPPDDLP---------SGRVEYITGPGVTTYK-------- 106
Query: 446 DCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKC 505
Y C + T Y C DG G LP P C
Sbjct: 107 ------AVIQYSCEETFYTM----KVNDGKYVCE-----ADGFWTSSKGEKSLPVCEPVC 151
Score = 36.7 bits (85), Expect = 0.055
Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 11/105 (10%)
Query: 113 DEGKECHDKYRTCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCRDGSDEGKECHD 171
+ G E + S CQ + R C DCG D G E
Sbjct: 46 ETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSI-VDCGPPDD---LPSGRVEYITGPG 101
Query: 172 KYRTCSSEEFACQNFKCIRK----TYHC--DGEDDCGDRSDEFNC 210
+ +++C+ K Y C DG
Sbjct: 102 VTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPV 146
Score = 35.5 bits (82), Expect = 0.12
Identities = 25/163 (15%), Positives = 39/163 (23%), Gaps = 45/163 (27%)
Query: 556 CKNGKCIPAQ----------WRCDHDEDCTDGSDEMECGGFQC-KNGTFQCSSGHCIAAY 604
NG P Q C+ + G ++ C K+G++ C
Sbjct: 23 PPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIV- 81
Query: 605 FRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDE 664
DC D + Y G ++ + C E ++
Sbjct: 82 -------DCGPPDDLPSGRVEYITG--PGVTTYKAVIQYSCEETF--------YTMKVND 124
Query: 665 TSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKC 707
+C DG G LP P C
Sbjct: 125 GKYVCE----------------ADGFWTSSKGEKSLPVCEPVC 151
Score = 33.6 bits (77), Expect = 0.47
Identities = 12/87 (13%), Positives = 17/87 (19%), Gaps = 13/87 (14%)
Query: 1003 QYTCSNHKCIDRAALCNHVDDCGDLSDELGCHKE-------NSTCSSSQFRCNNGKCID- 1054
C DR + DCG D E + + Q+ C
Sbjct: 62 TAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMK 121
Query: 1055 -----YHLVCNKESDCEDDSDEPLHCN 1076
Y + C
Sbjct: 122 VNDGKYVCEADGFWTSSKGEKSLPVCE 148
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 35.0 bits (81), Expect = 0.010
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 18/57 (31%)
Query: 242 CDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVAN 298
C DNGGC C C+C + + L D+K+CV+
Sbjct: 1 CSLDNGGCDQFCRE-----------------ERSEVRCSCAHGYVLGD-DSKSCVST 39
Score = 33.9 bits (78), Expect = 0.025
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 1359 CATGIHHCSQVCTNLNGTYACSCNAGFTLSD 1389
C+ C Q C CSC G+ L D
Sbjct: 1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGD 31
Score = 28.5 bits (64), Expect = 1.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 1088 CGHKCVDTLTGYYCECNTGYN 1108
C C + + C C GY
Sbjct: 8 CDQFCREERSEVRCSCAHGYV 28
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 39.0 bits (91), Expect = 0.012
Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 53/238 (22%)
Query: 1105 TGYNDDDIGTVSPSSNKVLTRSTV---IYHVRI-----------WSSNVLVMADVYSTRG 1150
T + + +SN V + + + + +
Sbjct: 91 TNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT----- 145
Query: 1151 SVMENRTVKMEVTKIPLCALDVRSIKLD---------------VAELDGTNRKTLKT--A 1193
+ V + + + + I + ++ +D + T
Sbjct: 146 ---VTKAV---INTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV 198
Query: 1194 IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM-DGSNFT---RILTHEDDIAWPNALTLD 1249
P GI ++P Y + N+ Y + M D RI P + +
Sbjct: 199 EAAPSGIAVNPEGTKAYVT--NVDKYFNTVSMIDTGTNKITARIPVG----PDPAGIAVT 252
Query: 1250 YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSI 1307
+++Y A + + ++ +D ++ K P+ + + +
Sbjct: 253 PDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFK 310
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 34.7 bits (80), Expect = 0.012
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 1357 DECATGIHHCSQVCTNLNGTYACSCNAGFTL-SDGLSGVCKANDN 1400
C+ C Q C + CSC G+TL +G + C
Sbjct: 2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA--CIPTGP 44
Score = 31.6 bits (72), Expect = 0.15
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 18/56 (32%)
Query: 242 CDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVA 297
C DNG C C S C+C + L + K C+
Sbjct: 4 CSLDNGDCDQFCHE-----------------EQNSVVCSCARGYTLAD-NGKACIP 41
Score = 29.7 bits (67), Expect = 0.90
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 1324 HHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQ 1368
C +C+C +G+ + N K C+ G +
Sbjct: 13 QFCHEEQNS--VVCSCARGYTLADNG-KACIPTGPYPCGKQTLER 54
Score = 28.9 bits (65), Expect = 1.6
Identities = 6/21 (28%), Positives = 7/21 (33%)
Query: 1088 CGHKCVDTLTGYYCECNTGYN 1108
C C + C C GY
Sbjct: 11 CDQFCHEEQNSVVCSCARGYT 31
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 38.0 bits (87), Expect = 0.023
Identities = 30/220 (13%), Positives = 46/220 (20%), Gaps = 22/220 (10%)
Query: 276 SYTCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMS 335
+ F + C +C G G + C + P
Sbjct: 147 DFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSD 206
Query: 336 CPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILN 395
C QC AG +C CR DE C CP L + +
Sbjct: 207 CCHNQCAAGCTGPRESDCLV----------CRKFRDEATCKDTCPPLMLYNPTTYQMD-- 254
Query: 396 SWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA 455
+G A C +G C+ ++ +
Sbjct: 255 --------VNPEGKYSFGATCVK--KCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKK 304
Query: 456 YMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 495
R G K + + G
Sbjct: 305 CEGPCRKVCNGIGIGEFKDSLSINATNIKHFKNCTSISGD 344
Score = 32.2 bits (72), Expect = 1.4
Identities = 28/239 (11%), Positives = 52/239 (21%), Gaps = 18/239 (7%)
Query: 525 CDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTD---GSDEM 581
DF ++ C C + + + C+ G
Sbjct: 146 SDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPS 205
Query: 582 ECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAS 641
+C QC G C+ CR DE C P +Q
Sbjct: 206 DCCHNQCAAGCTGPRESDCLV----------CRKFRDEATCKDTCPPLMLYNPTTYQMDV 255
Query: 642 THLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELP 701
+ G C + + +C + DG C+
Sbjct: 256 NPEG----KYSFG-ATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCR 310
Query: 702 QNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKN 760
+ C + + + + GD ++ + Q +
Sbjct: 311 KVCNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELD 369
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 33.5 bits (77), Expect = 0.030
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 20/66 (30%)
Query: 242 CDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVANCTQ 301
C +NGGC C +C C + L D +C
Sbjct: 2 CVNENGGCEQYCSDHT----------------GTKRSCRCHEGYSLLA-DGVSCTP---T 41
Query: 302 GQHHCG 307
++ CG
Sbjct: 42 VEYPCG 47
Score = 28.9 bits (65), Expect = 1.4
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 1359 CATGIHHCSQVCTNL-NGTYACSCNAGFTLSD 1389
C C Q C++ +C C+ G++L
Sbjct: 2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA 33
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 37.6 bits (86), Expect = 0.036
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 360 CDGVD-DCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHN 418
C+ D + D + C F CA GRC+ C+G+ DC D SDE
Sbjct: 46 CNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIY 105
Query: 419 RPCDKDTEF 427
+ C + +
Sbjct: 106 KKCQHEMDQ 114
Score = 33.3 bits (75), Expect = 0.81
Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 4/112 (3%)
Query: 609 GDRDCR-DLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSS 667
C + +C P F CA T CV + LC+G +DCGD SDE
Sbjct: 42 HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEA-- 99
Query: 668 LCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNR 719
+ ++ + + H C +
Sbjct: 100 -NCRRIYKKCQHEMDQYWGIGSLASGINLFTNSFEGPVLDHRYYAGGCSPHY 150
Score = 32.9 bits (74), Expect = 1.0
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 391 RCILNSWKCDGEPDCKDGSDEDPAMCHN-----RPCDKDTEFACRNGHCIPKLWVCDFDN 445
+L + GEP C + SD++ C + + G C+ + +C+ DN
Sbjct: 33 AYLLQPSQFHGEP-C-NFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDN 90
Query: 446 DCGDDSDEPAYMCRQRNCTKGWERCPG 472
DCGD SDE + C ++ G
Sbjct: 91 DCGDQSDEANCRRIYKKCQHEMDQYWG 117
Score = 32.5 bits (73), Expect = 1.2
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 886 GDRDCR-DLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSS 944
C + +C P F CA T CV + LC+G +DCGD SDE +
Sbjct: 42 HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDE--A 99
Query: 945 LCSNMNCTSLHKYQCDNGRCIASY 968
C + H+ G +
Sbjct: 100 NCRRIYKKCQHEMDQYWGIGSLAS 123
Score = 32.5 bits (73), Expect = 1.4
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 322 GERDCGDGSDEPMSCPARQC------RAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHC 375
C E C + G G C +C+G +DC D SDE +C
Sbjct: 42 HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
Query: 376 DLPCPDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDK 423
+ + + + + +G D + C
Sbjct: 102 RRIYKKCQHEMDQYWGIGSLASGINLFTNSFEGPVLDHR-YYAGGCSP 148
Score = 31.8 bits (71), Expect = 2.1
Identities = 20/66 (30%), Positives = 27/66 (40%)
Query: 854 CDGDRDCRDLSELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYK 913
C +R CR G +G C+ C+GD DC D SDE NC Y + +
Sbjct: 56 CVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQY 115
Query: 914 FQCAST 919
+ S
Sbjct: 116 WGIGSL 121
Score = 31.4 bits (70), Expect = 3.2
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 146 GEDDC-GDRSDEFNCRDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDR 204
+ C + +C + + C Q +C+ + C+G++DCGD+
Sbjct: 42 HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVC------AQTGRCVNRRLLCNGDNDCGDQ 95
Query: 205 SDEFNCSRDYRVLRNTTHRPYDI 227
SDE NC R Y+ ++ + + I
Sbjct: 96 SDEANCRRIYKKCQHEMDQYWGI 118
Score = 30.2 bits (67), Expect = 6.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 485 CDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAED 540
C+ D + + + RC+ +R +C+ +NDCGDQSDEA
Sbjct: 46 CNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
Score = 30.2 bits (67), Expect = 6.6
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 687 CDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAED 742
C+ D + + + RC+ +R +C+ +NDCGDQSDEA
Sbjct: 46 CNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANC 101
Score = 29.8 bits (66), Expect = 8.3
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 540 DLCAG-AYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCS-S 597
D C YR + +G+ C+ + + Q + F C+ +
Sbjct: 23 DPCQKKRYRYAYLLQPSQFHGE------PCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQT 76
Query: 598 GHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCAST 642
G C+ C+GD DC D SDE NC Y + + + S
Sbjct: 77 GRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGSL 121
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo
sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 36.3 bits (84), Expect = 0.042
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 1328 NITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFT 1386
+ + K D D+C T C + G Y C+C GF
Sbjct: 18 SYEEAREVFEDSDKTN----EFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
Score = 34.3 bits (79), Expect = 0.16
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 1331 GGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSD 1389
G Y CTC +GF C+ C Q C + CSC G+TL+D
Sbjct: 59 GLGEYTCTCLEGFEGKNCE---LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLAD 114
Score = 30.9 bits (70), Expect = 2.5
Identities = 8/64 (12%), Positives = 11/64 (17%), Gaps = 3/64 (4%)
Query: 1323 LHHCMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCN 1382
+ S T G D D + N T +
Sbjct: 128 GKQTLERRKRSVAQATSSSGEAPDSIT---WKPYDAADLDPTENPFDLLDFNQTQPERGD 184
Query: 1383 AGFT 1386
T
Sbjct: 185 NNLT 188
Score = 30.9 bits (70), Expect = 2.5
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 1075 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGY 1107
+ ++ C C + C C GY
Sbjct: 78 LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGY 110
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 33.6 bits (77), Expect = 0.043
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 1353 CLDVDECATGIHHCSQVCTNL-NGTYACSCNAGFTL-SDGLS 1392
D C C Q C++ +C C+ G++L +DG+S
Sbjct: 2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS 43
Score = 33.6 bits (77), Expect = 0.048
Identities = 11/58 (18%), Positives = 15/58 (25%), Gaps = 17/58 (29%)
Query: 240 NPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNKTCVA 297
C +NGGC C +C C + L D +C
Sbjct: 6 LICVNENGGCEQYCSDHT----------------GTKRSCRCHEGYSLLA-DGVSCTP 46
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 36.7 bits (85), Expect = 0.051
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 4/90 (4%)
Query: 543 AGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIA 602
A +C CI RCD + + + G + + ++ C +
Sbjct: 31 LTALPRCGTGA-DQGKKVCIV-YHRCDGVTNTVTPEEVINTTGEGIFD--IRENANECES 86
Query: 603 AYFRCDGDRDCRDLSDEMNCPPRYPGGRFC 632
C G + L PP P +
Sbjct: 87 YLDVCCGLPEGGVLPTPSPTPPVVPVLKPS 116
Score = 36.0 bits (83), Expect = 0.094
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 9/117 (7%)
Query: 975 DNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDELGCH 1034
+ G + T + C + CI C+ V + + +
Sbjct: 14 EYIPPGYEIVTKAPLGALTALPRCGTGAD--QGKKVCIVYH-RCDGVTNTVTPEEVINTT 70
Query: 1035 KENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHK 1091
E R N +C Y VC + ++ + CG +
Sbjct: 71 GEGI----FDIRENANECESYLDVCCGLPEGGVLPTPS--PTPPVVPVLKPSFCGIR 121
Score = 29.4 bits (66), Expect = 9.4
Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 834 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGT-------FQCSSGHCIAAYFRCDG 886
+C G CI Y RCDG + E+ T + ++ C + C G
Sbjct: 36 RCGTGA-DQGKKVCIV-YHRCDGVTNTVTPEEVINTTGEGIFDIRENANECESYLDVCCG 93
Query: 887 DRDCRDLSDEMNCPPRYPGGRFC 909
+ L PP P +
Sbjct: 94 LPEGGVLPTPSPTPPVVPVLKPS 116
Score = 29.4 bits (66), Expect = 9.9
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 445 NDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKD--DCRDGSDELPQNC 502
CG +D+ +C + RC G TN + + G+ D R+ ++E
Sbjct: 35 PRCGTGADQGKKVCIVYH------RCDGVTNTVTPEEVINTTGEGIFDIRENANECESYL 88
Query: 503 PKCHETTDFQCKNNRCIPKRWMCDFEN-DCG 532
C + + + CG
Sbjct: 89 DVCCGLPEGGVLPTPSPTPPVVPVLKPSFCG 119
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like,
structural GEN joint center for structural genomics,
JCSG; 2.23A {Bacteroides thetaiotaomicron}
Length = 430
Score = 36.6 bits (84), Expect = 0.065
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 1192 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 1251
T Q+ G HP G +YF+SWN + + T + T +D W +
Sbjct: 223 TKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPS 280
Query: 1252 TERLYWADAHLDYIASVDLDGKHKHIV 1278
Y + YI D D K K +
Sbjct: 281 GNYAYIVVVNQHYILRSDYDWKTKRLT 307
Score = 31.2 bits (70), Expect = 2.6
Identities = 12/134 (8%), Positives = 39/134 (29%), Gaps = 14/134 (10%)
Query: 1437 IDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIY 1496
DP + ++ R + V +G + I A ++
Sbjct: 144 FDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKV---------RTICWTHEADSMI 194
Query: 1497 WTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPRIE 1556
+++ + + + + ++ ++ + P G++++ A
Sbjct: 195 --ITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVF- 251
Query: 1557 SAWMDGSHRSATQI 1570
D + + T +
Sbjct: 252 --RYDFTTQETTPL 263
Score = 30.1 bits (67), Expect = 7.1
Identities = 23/152 (15%), Positives = 32/152 (21%), Gaps = 41/152 (26%)
Query: 1434 ALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQV--------------------QAGFGQ 1473
+ P Y V I RS K +A
Sbjct: 274 HIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHA 333
Query: 1474 DLGIKSIGKLTAIAVDWIAHNIYWTVSDRSGSK-----PKGKVM-VA---------HNDG 1518
+ ++ Y DR P+G+V A +NDG
Sbjct: 334 PRQGTFVKNPAYKGSS-DEYDFY--FCDRENHCIRILTPQGRVTTFAGRGSNGTSGYNDG 390
Query: 1519 RYRRSLVSENLESPSSIALDPTLGKMFWAETG 1550
R P I D F +
Sbjct: 391 DLR---QEARFNHPEGIVYDEERECFFIGDRE 419
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate
IMMU system, blood, membrane, cytolysin, immune SYST;
HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB:
4a5w_B* 4e0s_B*
Length = 913
Score = 36.8 bits (84), Expect = 0.078
Identities = 33/276 (11%), Positives = 62/276 (22%), Gaps = 24/276 (8%)
Query: 859 DCRDLSELNGTFQCSS---GHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQ 915
+ + +L C+ + A D + N G C
Sbjct: 465 ELAPIVDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQCAPCPNNGRPTLSGTECLCVCQS 524
Query: 916 CASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVD 975
C +QS G +S + +C+N + C+G
Sbjct: 525 GTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSRTRECNNPAPQRGGKRCEG-- 582
Query: 976 NCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCNHVDDC--GDLSDELGC 1033
+E+ + + + I+ + C G + +E
Sbjct: 583 --EKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQL 640
Query: 1034 HKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDD---SDEPLHCNVDECAKVETNQCGH 1090
+ C G + V + C D + C EC K +
Sbjct: 641 YLVGEDVE---ISCLTG----FETVGYQYFRCLPDGTWRQGDVECQRTECIKPVVQEVLT 693
Query: 1091 KCVDTLTGYY-----CECNTGYNDDDIGTVSPSSNK 1121
C G+ + N
Sbjct: 694 ITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNS 729
Score = 36.8 bits (84), Expect = 0.078
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 401 GEPDCKDGSDEDPAMCHNRPCDKD-----TEFACRNGHCIPKLWVCDFDNDCGDDSDEPA 455
G C ++ C + +F C +G CI + C+ +NDCGD+SDE
Sbjct: 92 GGQPCTAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERD 151
Query: 456 YMCRQRNCTKGWERCPG 472
+ CT+ + P
Sbjct: 152 CGRTKAVCTRKYNPIPS 168
Score = 32.5 bits (73), Expect = 1.5
Identities = 36/281 (12%), Positives = 73/281 (25%), Gaps = 19/281 (6%)
Query: 834 QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCSSGHCIAAYFRCDGDRDCRDL 893
NG S C+ +C S + + + R
Sbjct: 505 CPNNGRPTLSGTECLCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWSTCDATYKRSR 564
Query: 894 SDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTS 953
+ E N P GG+ C K Q + ++ +D + + +
Sbjct: 565 TRECNNPAPQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSG-- 622
Query: 954 LHKYQCDNGRCIASYQLCDGVDNCGDGSDEN---NLTLCTVHTRVKPCELYSQYTCSNHK 1010
C + + + G D TV + C + + +
Sbjct: 623 -----CPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVE 677
Query: 1011 CIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSD 1070
C + V + ++ ++ + + C G + + C+ +S
Sbjct: 678 CQRTECIKPVVQEVLTITPFQRLYRIGESI---ELTCPKG----FVVAGPSRYTCQGNSW 730
Query: 1071 EPLHCNVDECAKVETNQ--CGHKCVDTLTGYYCECNTGYND 1109
P N C K + + +G C C + D
Sbjct: 731 TPPISNSLTCEKDTLTKLKGHCQLGQKQSGSECICMSPEED 771
Score = 30.6 bits (68), Expect = 4.8
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 750 QCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKC 792
+++F+C +G+CI + C+ + DC D SDE +CG + C
Sbjct: 117 ADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVC 159
Score = 29.8 bits (66), Expect = 10.0
Identities = 16/76 (21%), Positives = 25/76 (32%)
Query: 279 CACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPA 338
C P + +K C ++ +CI +C+GE DCGD SDE
Sbjct: 96 CTAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRT 155
Query: 339 RQCRAGSFQCDNGNCT 354
+ +
Sbjct: 156 KAVCTRKYNPIPSVQL 171
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 36.6 bits (84), Expect = 0.084
Identities = 24/183 (13%), Positives = 37/183 (20%), Gaps = 16/183 (8%)
Query: 275 VSYTCACPNQFYLDPRDNKTCVANCTQGQHHCGGH-DQKCIPWFWKCDGERDCGDGSDEP 333
V+Y C N + C
Sbjct: 358 VTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTV 417
Query: 334 MSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFK-------- 385
P +CR D C + G+ C G K+C+ +
Sbjct: 418 QVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRK 477
Query: 386 ------CASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRN-GHCIPKL 438
C+ G C+ C C C++ C G +
Sbjct: 478 DNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC 537
Query: 439 WVC 441
C
Sbjct: 538 GKC 540
Score = 32.4 bits (73), Expect = 1.3
Identities = 45/312 (14%), Positives = 80/312 (25%), Gaps = 32/312 (10%)
Query: 751 CSESEFQCKNGKCIPAQWR--CDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNA 808
+ C NG Q R CD + + +++ +C I +
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVT 416
Query: 809 AASNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNG 868
+C+ G + G +C +G+ C+ R EL G
Sbjct: 417 VQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGY---IGKNCECQTQGRSSQELEG 473
Query: 869 TFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSEL 928
+ + + I C G DC + + C G+ +C + + ++
Sbjct: 474 SCRKDNNSII-----CSGLGDC--VCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQV 526
Query: 929 CDGTDDCGDNSDETSSLCSNMNCTSLHKYQ---CDNGRCIASYQLCDGVDNCGDGSDENN 985
C G LC C ++ C R V+ G G N
Sbjct: 527 CGGPGRG---------LCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCN 577
Query: 986 LTLCTVHTRVKPCELYSQY--TCSNHKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSS 1043
+ C ++ C+ C + C C S
Sbjct: 578 VCECHSGYQLPLCQECPGCPSPCGKYIS------CAECLKFEKGPFGKNCSAACPGLQLS 631
Query: 1044 QFRCNNGKCIDY 1055
C +
Sbjct: 632 NNPVKGRTCKER 643
Score = 30.5 bits (68), Expect = 5.3
Identities = 40/324 (12%), Positives = 80/324 (24%), Gaps = 50/324 (15%)
Query: 796 TRIVQMEVMKWNAAASNWRCDHDEDCTDGSDETECGGFQCKNGTFQCSSGHCIAAYFRCD 855
++ + NA + +D C++G C I +
Sbjct: 339 NKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQ----INVPITFQVKVT 394
Query: 856 GDRDCRDLSELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYKFQ 915
++ S + + + +C+ + G F +
Sbjct: 395 ATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRD-----QSRDRSLCHGKGFLECGICR 449
Query: 916 CASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLH--KYQCDNGRCIASYQLCDG 973
C + + + C+ G +S E C N + + C G+C+ G
Sbjct: 450 CDTGY----IGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPG 504
Query: 974 VDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAALCN---HVDDCGDLSDE 1030
G + + + C + + C + C KC C+ C
Sbjct: 505 KLIYGQYCECDTIN-CERYNG-QVCGGPGRGLCFCGKCR-----CHPGFEGSACQCERTT 557
Query: 1031 LGCHKENSTCSSSQFRCNNGKCIDYHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQ 1087
GC G+C C+ C++ P C
Sbjct: 558 EGC-----LNPRRVECSGRGRCRCNVCECHSGYQLPLCQECPGCPSPC-----------G 601
Query: 1088 CGHKCVDTLTGYYCECNTGYNDDD 1111
C + + G +
Sbjct: 602 KYISCAEC-----LKFEKGPFGKN 620
Score = 30.1 bits (67), Expect = 7.5
Identities = 19/189 (10%), Positives = 37/189 (19%), Gaps = 14/189 (7%)
Query: 613 CRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSE-----LCDGTDDCGDNSDETSS 667
LS + Y C++ Q + +
Sbjct: 338 YNKLSSRVFLDHNALPDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATE 397
Query: 668 LCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKRW-- 725
+ + C + ++ CH +C RC
Sbjct: 398 CIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGK 457
Query: 726 MCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEM-- 783
C+ + + C G+C+ C +
Sbjct: 458 NCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCL-----CHTSDVPGKLIYGQYC 512
Query: 784 ECGGFQCKC 792
EC C+
Sbjct: 513 ECDTINCER 521
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B*
1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B*
1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B*
2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 34.2 bits (79), Expect = 0.092
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 1331 GGSGYLCTCYQGFIIDKNNAKKC-LDVDE-CATGIHHCSQVCTNLNGTYACSCNAGFTLS 1388
G Y CTC +GF K C L + C+ C Q C + CSC G+TL+
Sbjct: 59 GLGEYTCTCLEGF-----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Query: 1389 D 1389
D
Sbjct: 114 D 114
Score = 32.6 bits (75), Expect = 0.32
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 1328 NITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFT 1386
+ + K D D+C T C + G Y C+C GF
Sbjct: 18 SYEEAREVFEDSDKTN----EFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFE 72
Score = 31.1 bits (71), Expect = 1.2
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 1047 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 1099
N GKC D Y C + +CE + + C++D C C +
Sbjct: 51 QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL--CSLDNG------DCDQFCHEEQNSV 102
Query: 1100 YCECNTGY 1107
C C GY
Sbjct: 103 VCSCARGY 110
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A
{Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 35.5 bits (82), Expect = 0.12
Identities = 26/209 (12%), Positives = 60/209 (28%), Gaps = 24/209 (11%)
Query: 1105 TGYNDDDIGTVSPSSNKVLTRSTVIYHVRIWSSNVLVMADVYSTRGSVMENRTVKMEVTK 1164
+ + + + +V R + R V ++ T + ++
Sbjct: 106 GNTVNSAVTAIDAKTGEVKGRLVLD------DRKRTEEVRPLQPRELVADDATNTVYIS- 158
Query: 1165 IPLCALDVRSIKLDVAELDGTNRKTLKTAI---QDPRGITLHPGIGYVYFSSWNLQAYIG 1221
+ + +DG N K + G+ L +Y ++ + +
Sbjct: 159 -------GIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD--GELI 209
Query: 1222 KI-GMDGSNFTRILTHED-DIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIV 1278
I D +R +D + ++LD +R + D+ + VD G V
Sbjct: 210 TIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269
Query: 1279 ISGQKVPHVFALTLFEDHIYWTDWNTKSI 1307
+ + + Y T +
Sbjct: 270 AAPE--SLAVLFNPARNEAYVTHRQAGKV 296
Score = 34.4 bits (79), Expect = 0.30
Identities = 33/210 (15%), Positives = 65/210 (30%), Gaps = 44/210 (20%)
Query: 1100 YCECNTGYNDDDIGTVS---PSSNKVLTRSTVI---YHV-------RIWSSNVLVMADVY 1146
+ + D G V P + +V + +W N
Sbjct: 56 WLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGN-------- 107
Query: 1147 STRGSVMENRTVKMEVTKIPLCALDVRSIKLDVAELD-GTNRKTLKTAIQDPRGITLHPG 1205
+ +V T +D ++ ++ L ++T + PR +
Sbjct: 108 TVNSAV----TA-----------IDAKTGEV-KGRLVLDDRKRTEEVRPLQPRELVADDA 151
Query: 1206 IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI 1265
VY S ++ I + DG N ++ L LD +RLY +A +
Sbjct: 152 TNTVYISGIGKESVIWVV--DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD-GEL 208
Query: 1266 ASVDL-DGK--HKHIVISGQKVPHVFALTL 1292
++D D K + ++ K ++L
Sbjct: 209 ITIDTADNKILSRKKLLDDGKEHFFINISL 238
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 34.4 bits (79), Expect = 0.12
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 1075 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDD 1111
+++EC C H C + + GY+C C Y D
Sbjct: 115 TDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHD 151
Score = 32.9 bits (75), Expect = 0.44
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 1353 CLDVDECATGI-HHCSQVCTNLNGTYACSCNAGFTLSDG 1390
D++EC + CS C N G Y CSC + L D
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDD 152
Score = 29.8 bits (67), Expect = 4.3
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 929 CDGTDDCGDNSDETSS-LCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGD 979
++C D D S C+N + Y C C Y L D + NCG
Sbjct: 114 ATDINECTDFVDVPCSHFCNNF----IGGYFCS---CPPEYFLHDDMKNCGV 158
Score = 29.0 bits (65), Expect = 7.1
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 298 NCTQGQHHCGGHDQKCIPWFWKCDGERDCGD 328
N G + C C P ++ D ++CG
Sbjct: 133 NNFIGGYFC-----SCPPEYFLHDDMKNCGV 158
Score = 29.0 bits (65), Expect = 8.6
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 557 KNGKCIPAQWRCDHDEDCTDGSDEMECGGFQCKN--GTFQCSSGHCIAAYFRCDGDRDCR 614
+ A + +CTD D C F C N G + CS C YF D ++C
Sbjct: 103 ERFTGFAAYYVATDINECTDFVDVP-CSHF-CNNFIGGYFCS---CPPEYFLHDDMKNCG 157
Query: 615 D 615
Sbjct: 158 V 158
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A
{Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A*
3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 35.1 bits (80), Expect = 0.15
Identities = 26/196 (13%), Positives = 56/196 (28%), Gaps = 18/196 (9%)
Query: 1386 TLSDGLSGVCKANDNKLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIY 1445
++ DG + ++ P + R + + + +Y
Sbjct: 36 SVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95
Query: 1446 WVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHNIYWTVS----- 1500
VD Y + G G L A+ VD +Y+T
Sbjct: 96 IVDCYYHLSVVGS----EGGHATQLATSVDG-VPFKWLYAVTVDQRTGIVYFTDVSTLYD 150
Query: 1501 ------DRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPR 1554
S G+++ + +L+ + L P + + AE + +
Sbjct: 151 DRGVQQIMDTSDKTGRLIKYDPSTK-ETTLLLKELHVPGGAEVSADSSFVLVAEFLSH-Q 208
Query: 1555 IESAWMDGSHRSATQI 1570
I W++G + ++
Sbjct: 209 IVKYWLEGPKKGTAEV 224
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 34.9 bits (81), Expect = 0.15
Identities = 23/121 (19%), Positives = 44/121 (36%), Gaps = 19/121 (15%)
Query: 1435 LDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAHN 1494
L +D + Y D +R + + Q F + +AVD
Sbjct: 72 LAVDGAGTV-YVTDFNNRVVTLA---AGSNNQTVLPFDG------LNYPEGLAVDT-QGA 120
Query: 1495 IYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETGASPR 1554
+Y V+DR +V+ + + L L P +A+D + G ++ +T + R
Sbjct: 121 VY--VADRGN----NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNN-R 172
Query: 1555 I 1555
+
Sbjct: 173 V 173
Score = 32.6 bits (75), Expect = 0.86
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 17/117 (14%)
Query: 1434 ALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGFGQDLGIKSIGKLTAIAVDWIAH 1493
+ +D + Y D+ + + + + QV F I IAVD A
Sbjct: 154 GVAVDNSGNV-YVTDTDNNRVVK--LEAESNNQVVLPFTD------ITAPWGIAVD-EAG 203
Query: 1494 NIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDPTLGKMFWAETG 1550
+Y V++ + +V+ L L +P ++A+D ++ A+ G
Sbjct: 204 TVY--VTEHNT----NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRG 253
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 35.4 bits (81), Expect = 0.16
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 1326 CMNITGGSGYLCTCYQGFIIDKNNAKKCLDVDECATGIHHCSQV-----CTNLNGTYAC- 1379
C + GS C GF+ + + C D+DECA C C N + C
Sbjct: 17 CSSFPDGSWSCGFCPVGFLGNGTH---CEDLDECALVPDICFSTSKVPRCVNTQPGFHCL 73
Query: 1380 SCNAGFT 1386
C +
Sbjct: 74 PCPPRYR 80
Score = 34.6 bits (79), Expect = 0.28
Identities = 36/217 (16%), Positives = 61/217 (28%), Gaps = 29/217 (13%)
Query: 898 NCPPRYPG-GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHK 956
CPPRY G + +C ++ D T +C +++ C + S
Sbjct: 74 PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAE-----CIYLGHFSDPM 128
Query: 957 YQCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAA 1016
Y+C+ A L G D+ DG NL C+ +
Sbjct: 129 YKCECQTGYAGDGLICGEDSDLDGWPNLNLV------------------CATNATYHCIK 170
Query: 1017 LCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 1076
D ++ + + L+ N + D DE +
Sbjct: 171 DNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFN-PRQADYDKDE-VGDR 228
Query: 1077 VDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDDIG 1113
D C V + G C+ + DD+
Sbjct: 229 CDNCPYVHNPAQIDTDNN---GEGDACSVDIDGDDVF 262
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 35.0 bits (79), Expect = 0.25
Identities = 49/454 (10%), Positives = 81/454 (17%), Gaps = 7/454 (1%)
Query: 660 DNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNR 719
D + + C R QC
Sbjct: 138 HWQDIVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRC 197
Query: 720 CIPKRWMCDFENDCGDQSDEAEDLCAG--AYRQCSESEFQCKNGKCIPAQWRCDHDEDCT 777
P C G S + C + QC
Sbjct: 198 YGPYVSDCCHRECAGGCSGPKDTDCFACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNA 257
Query: 778 DGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNWRCDHDEDCTDGSDETECGGFQCKN 837
+ G F K +V +S + + C
Sbjct: 258 ----KYTYGAFCVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCTDICPKACDGI 313
Query: 838 GTFQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEM 897
GT S + + + L G A D ++ +
Sbjct: 314 GTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVRE 373
Query: 898 NCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKY 957
F S + + L G +SL
Sbjct: 374 ITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGN 433
Query: 958 QCDNGRCIASYQLCDGVDNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSNHKCIDRAAL 1017
Y ++ + E +
Sbjct: 434 IYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGP 493
Query: 1018 CNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 1077
+ + N + N+ C++ C K D P N
Sbjct: 494 DQCLSCRRFSRGRICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNC 553
Query: 1078 DECAKV-ETNQCGHKCVDTLTGYYCECNTGYNDD 1110
+C+ + C KC D L G + D
Sbjct: 554 TKCSHFKDGPNCVEKCPDGLQGANSFIFKYADPD 587
Score = 30.8 bits (68), Expect = 4.3
Identities = 31/283 (10%), Positives = 60/283 (21%), Gaps = 8/283 (2%)
Query: 832 GFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCSSGHCIAAYFRCDGDRDCR 891
F TFQ + + C ++ + C ++ + +
Sbjct: 241 TFVYNPTTFQLEHNFNAKYTYGAFCVKKCPHNFVVDSSSCVR--ACPSSKMEVEENGIKM 298
Query: 892 DLSDEMNCPPRYPGGRF--CPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM 949
CP G + +S +G +
Sbjct: 299 CKPCTDICPKACDGIGTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIE 358
Query: 950 NCTSLHKYQCDNGRCIASYQLCDGV-DNCGDGSDENNLTLCTVHTRVKPCELYSQYTCSN 1008
R I + N D S +NL L
Sbjct: 359 AIDPEKLNVFRTVREITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGI 418
Query: 1009 HKCIDRAALCNHVDDCGDLSDELGCHKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDD 1068
++ + + C+ ++ N I + +
Sbjct: 419 TSLQFQSLKEISAGNIYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMV 478
Query: 1069 SDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYNDDD 1111
+ C+ D C +QC C G C + D +
Sbjct: 479 CNH--LCSSDGCWGPGPDQC-LSCRRFSRGRICIESCNLYDGE 518
Score = 30.8 bits (68), Expect = 4.5
Identities = 45/431 (10%), Positives = 82/431 (19%), Gaps = 26/431 (6%)
Query: 281 CPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDG--SDEPMSCPA 338
N + + C C G + + C C
Sbjct: 148 PSNLTLVSTNGSSGCGRCHKSCTGRCWGPTENHCQTLTRTVCAEQCDGRCYGPYVSDCCH 207
Query: 339 RQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNSWK 398
R+C G + +C C + +D C CP + + N
Sbjct: 208 RECAGGCSGPKDTDCF----------ACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNA 257
Query: 399 CDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC 458
+ + C + C + + C D +
Sbjct: 258 KYTYGAFCVKKCPHNFVVDSSSCVRA----CPSSKMEVEENGIKMCKPCTDICPKACDGI 313
Query: 459 RQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRC 518
+ + + + + + R
Sbjct: 314 GTGSLMSAQTVDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEKLNVFRTVRE 373
Query: 519 IPKRWM--CDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTD 576
I N G S K Q++ + +
Sbjct: 374 ITGFLNIQSWPPNMTDFSVFSNLVTIGGRVLYSGLSLLILKQQGITSLQFQSLKEISAGN 433
Query: 577 GSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGGRFCPEYK 636
+ D + ++ M C
Sbjct: 434 IYITDNSNLCYYHTINWTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGP 493
Query: 637 FQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDG 696
QC C S + C E ++ C +C P+ + G
Sbjct: 494 DQC---LSCRRFSRGRICIESCNLYDGEFREFENDSIC---VECDPQCEKMEDGLLTCHG 547
Query: 697 SDELPQNCPKC 707
P NC KC
Sbjct: 548 PG--PDNCTKC 556
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 34.4 bits (78), Expect = 0.34
Identities = 29/237 (12%), Positives = 44/237 (18%), Gaps = 28/237 (11%)
Query: 277 YTCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSC 336
++ + NK C C C S C
Sbjct: 133 WSRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVC 192
Query: 337 PARQCRAGSFQCDNGNCTPSASICDGVDD------CRDGSDEKHCDLPCPDLEFKCASNG 390
P G + C DD CR+ + C CP +
Sbjct: 193 PTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDW- 251
Query: 391 RCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDD 450
D C N ++ N CIP +C
Sbjct: 252 ----RCVNFSFCQDLHHK-------CKNSRRQGCHQYVIHNNKCIP---------ECPSG 291
Query: 451 SDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWL-FCDGKDDCRDGSDELPQNCPKCH 506
+ C + + C + L N +
Sbjct: 292 YTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGN 348
Score = 33.3 bits (75), Expect = 0.76
Identities = 24/189 (12%), Positives = 42/189 (22%), Gaps = 16/189 (8%)
Query: 500 QNCPKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNG 559
CP + F C S + +E C +
Sbjct: 157 DICPGTAKGKTNCPATVIN------GQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHS 210
Query: 560 KCIPAQWRCDHDEDCT---DGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDL 616
+C+ + D C + + C C + C+ + C
Sbjct: 211 ECLGNCSQPDDPTKCVACRNFYLDGRCVE-TCPPPYYHFQDWRCV-NFSFCQDLHHKCKN 268
Query: 617 SDEMNCPPRYPGG----RFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNM 672
S C CP +S LC C + ++T ++
Sbjct: 269 SRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEG-EKTIDSVTSA 327
Query: 673 NCTSLHKCI 681
I
Sbjct: 328 QELRGCTVI 336
Score = 32.5 bits (73), Expect = 1.4
Identities = 23/215 (10%), Positives = 41/215 (19%), Gaps = 10/215 (4%)
Query: 174 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCSRDYRVLRNTTHRPYDIHVYHPL 233
+ C G + + T +
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTIC- 196
Query: 234 KQLAYPNPCDGDNGGCSHLCLLSPVPGVDRAPDMYADARSPVSYTCACPNQFYLDPRDNK 293
K + C C P A + V CP +Y
Sbjct: 197 KSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVE---TCPPPYYHFQDWRC 253
Query: 294 TCVANCTQGQHHCGGHDQKCIPWFWKCDGE--RDCGDGSDEPMSCPARQCRAGSFQCDNG 351
+ C H C ++ + + + +C G S C C
Sbjct: 254 VNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSN--LLCTPCLGPCPKV 311
Query: 352 NCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKC 386
+D + + C + L
Sbjct: 312 CHLLEGEKT--IDSVTSAQELRGCTVINGSLIINI 344
Score = 31.4 bits (70), Expect = 2.7
Identities = 25/214 (11%), Positives = 53/214 (24%), Gaps = 13/214 (6%)
Query: 445 NDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPK 504
+ D ++ + + + + + CPG + +G+ R
Sbjct: 134 SRILDSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERC------WTHSH 187
Query: 505 CHETTDFQCKNNRCIP--KRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCI 562
C + CK++ C + +C D + + + C
Sbjct: 188 CQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYH 247
Query: 563 PAQWRCDHDEDCTDGSDEMECGGFQCKNGTF----QCSSGHCIAAYFRCDGDRDCRDLSD 618
WRC + C D + + Q + +C C + Y + C
Sbjct: 248 FQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIP-ECPSGYTMNSSNLLCTPCLG 306
Query: 619 EMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELC 652
G + C +
Sbjct: 307 PCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSL 340
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 34.2 bits (77), Expect = 0.35
Identities = 53/455 (11%), Positives = 91/455 (20%), Gaps = 38/455 (8%)
Query: 276 SYTCACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMS 335
+ F + C +C G G + C + P
Sbjct: 147 DFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKSPSD 206
Query: 336 CPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILN 395
C QC AG +C CR DE C CP L + + +N
Sbjct: 207 CCHNQCAAGCTGPRESDCL----------VCRKFRDEATCKDTCPPLMLYNPTTYQMDVN 256
Query: 396 SWKCDGE-PDCKDGSDEDPAMCHNRPC------DKDTEFACRNGHCIPKLWVCDFDNDCG 448
C + + + C D C C +
Sbjct: 257 PEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGI 316
Query: 449 DDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHET 508
+ + K ++ C + I F D + K +
Sbjct: 317 GIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDPQELDILKTVKE 376
Query: 509 TDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRC 568
R + ++ G +Q + + R
Sbjct: 377 ITGFLLIQAWPENRTDLHAFENL--------EIIRGRTKQHGQFSLAVVSLNITSLGLRS 428
Query: 569 DHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPG 628
+ D ++ G + + + C
Sbjct: 429 LKEISDGDVIISGNKNLCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSP 488
Query: 629 GRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCD 688
C S E C + +CI C
Sbjct: 489 EGCWGPEPRDCVSCRNVSRGRE-CVDKCKLLE--------GEPREFVENSECIQCHPECL 539
Query: 689 GKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPK 723
+ + P NC +C D C+
Sbjct: 540 PQAMNITCTGRGPDNCIQCAHYID----GPHCVKT 570
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 32.2 bits (74), Expect = 0.41
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1353 CLDVDECATGIHHCSQ--VCTNLNGTYACSCNAGFT 1386
DVDEC+ G + C C N G++ C C G+T
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYT 37
Score = 31.0 bits (71), Expect = 1.4
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 1326 CMNITGGSGYLCTCYQGFIIDKNNAKKC-LDVDECATGIHHCSQVCTNLNGTYACSCNAG 1384
C+N G + C C QG+ +C +DV+EC + C + G + C C G
Sbjct: 21 CINTLGS--FECQCLQGY-----TGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPG 73
Query: 1385 FT 1386
+
Sbjct: 74 YE 75
Score = 28.7 bits (65), Expect = 6.5
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 1076 NVDECAKVETNQCGH--KCVDTLTGYYCECNTGY 1107
+VDEC+ N C H KC++TL + C+C GY
Sbjct: 4 DVDECSL-GANPCEHAGKCINTLGSFECQCLQGY 36
Score = 28.7 bits (65), Expect = 8.0
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 1334 GYLCTCYQGFIIDKNNAKKC-LDVDECATGIHHCSQ--VCTNLNGTYACSCNAGFT 1386
+ C C G+ C ++ DECA+ C C + + C C GFT
Sbjct: 65 EFQCICMPGY-----EGVHCEVNTDECAS--SPCLHNGRCLDKINEFQCECPTGFT 113
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 33.6 bits (77), Expect = 0.50
Identities = 22/212 (10%), Positives = 55/212 (25%), Gaps = 48/212 (22%)
Query: 1103 CNTGYNDDDIGTVSPSSNKVLTRSTV---------------IYHVRIWSSNVLVMADVYS 1147
+ ++ + S NK ++ + + + S+N + +
Sbjct: 101 VTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKI-D 159
Query: 1148 TRGSVMENRTVKMEVTKIPLCALDVRSIKLD---------------VAELDGTNRKTLKT 1192
G + + + P +I + L+ N + +
Sbjct: 160 ADGVLFDTGQEFISGGTRP------FNITFTPDGNFAFVANLIGNSIGILETQNPENITL 213
Query: 1193 -----AIQDPRGITLHPGIGYVYFSSWN------LQAYIGKIGMDGSNFTRILTHEDDIA 1241
P I + VY + + G + S +L +
Sbjct: 214 LNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273
Query: 1242 WPNALTLDYFTERLYWADAHLDYIASVDLDGK 1273
N + L+ +L+ + + + GK
Sbjct: 274 GANQMALNKTETKLFISANISRELKVFTISGK 305
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 33.8 bits (77), Expect = 0.51
Identities = 42/251 (16%), Positives = 66/251 (26%), Gaps = 52/251 (20%)
Query: 645 CVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNC 704
E+ E CD CG ++ + C C + C
Sbjct: 220 IWEEGEECD----CGSPANCQNPCCDAATCK-----LKPGAECGNGL------------- 257
Query: 705 PKCHETTDFQCKNNRCIPKRWMCDFENDC-GDQSDEAEDLCAGAYRQCSESEFQCKNGKC 763
C + C R CD C G ++ D + C + C NG C
Sbjct: 258 --CCYQCKIKTAGTVCRRARDECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGDC 315
Query: 764 IPAQWRCDHDEDCTDGSDEMECGGFQCKCVTMTRIVQMEVMKWNAAASNWRCDHDEDCTD 823
+ +C + C K R ++
Sbjct: 316 PIMRNQCISLFGSRANVAKDSCFQENLKGSYY---------------GYCRKENGRKIPC 360
Query: 824 GSDETECGGFQCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSELNGTFQCSSGHCIAAYFR 883
+ +CG C N + + C Y D + D GT +C G
Sbjct: 361 APQDVKCGRLFCLNNSP-RNKNPCNMHYSCMDQHKGMVD----PGT-KCEDGK------V 408
Query: 884 CDGDRDCRDLS 894
C+ R C D++
Sbjct: 409 CNNKRQCVDVN 419
Score = 31.5 bits (71), Expect = 2.7
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGS-----DEMECGGFQCKNGTFQCSSGHCIAA 603
C + + + C A+ CD E CT S D+++ G C+N C +G C
Sbjct: 259 CYQCKIKTAGTVCRRARDECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGYCYNGDCPIM 318
Query: 604 YFRC 607
+C
Sbjct: 319 RNQC 322
Score = 29.6 bits (66), Expect = 9.3
Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 20/155 (12%)
Query: 922 CVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGS 981
E+ E CD CG ++ + C C +C NG C ++ C
Sbjct: 220 IWEEGEECD----CGSPANCQNPCCDAATCKLKPGAECGNGLCCYQCKIKTAGTVCRRAR 275
Query: 982 DENNLT-LCTVHTRV----------KPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDE 1030
DE ++ CT + KPC+ Y C N C C + +
Sbjct: 276 DECDVPEHCTGQSAECPRDQLQQNGKPCQNNRGY-CYNGDCPIMRNQCISLFGSRANVAK 334
Query: 1031 LGCHKENSTCSSSQFRCNNG----KCIDYHLVCNK 1061
C +EN S + C + C +
Sbjct: 335 DSCFQENLKGSYYGYCRKENGRKIPCAPQDVKCGR 369
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 31.9 bits (73), Expect = 0.77
Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 1331 GGSGYLCTCYQGFIIDKNNAKKC-LDVDECATGIHHCSQVCTNLNGTYACSCNAGFTLSD 1389
+ Y C C GF K C LD T + CSC G+ L+
Sbjct: 65 DINSYECWCQVGF-----EGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAP 119
Score = 31.2 bits (71), Expect = 1.2
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 1351 KKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFT 1386
K+ +D D+C +C + +Y C C GF
Sbjct: 43 KQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE 78
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease,
EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein,
hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A
{Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB:
1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L*
2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L*
1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...
Length = 142
Score = 31.5 bits (72), Expect = 0.88
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 1331 GGSGYLCTCYQGFIIDKNNAKKC-LDVDECATGIHH---CSQVCTNL-NGTYACSCNAGF 1385
Y+C C F + C D+ ++ C Q C++ +C C+ G+
Sbjct: 64 QLQSYICFCLPAF-----EGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGY 118
Query: 1386 TLSD 1389
+L
Sbjct: 119 SLLA 122
Score = 30.0 bits (68), Expect = 2.6
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 1351 KKCLDVDECATGIHHCSQVCTNLNGTYACSCNAGFT 1386
D D+CA+ C + +Y C C F
Sbjct: 42 ISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFE 77
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja
atra}
Length = 422
Score = 32.7 bits (74), Expect = 1.1
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 549 CSESEFQCKNGKCIPAQWRCDHDEDCTDGS-----DEMECGGFQCKNGTFQCSSGHCIAA 603
C + +F+ +C A+ CD E CT S D + G C+N C +G C
Sbjct: 263 CEKCKFKGARAECRAAKDDCDLPELCTGQSAECPTDVFQRNGLPCQNNQGYCYNGKCPIM 322
Query: 604 YFRC 607
+C
Sbjct: 323 TNQC 326
Score = 31.9 bits (72), Expect = 1.7
Identities = 37/170 (21%), Positives = 54/170 (31%), Gaps = 21/170 (12%)
Query: 922 CVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKYQCDNGRCIASYQLCDGVDNCGDGS 981
VE E CD CG +D S+ C+ C H+ QCD+ C + C
Sbjct: 224 FVEVGEECD----CGSPADCQSACCNATTCKLQHEAQCDSEECCEKCKFKGARAECRAAK 279
Query: 982 DENNLT-LCTVHTRV----------KPCELYSQYTCSNHKCIDRAALCNHVDDCGDLSDE 1030
D+ +L LCT + PC+ Y C N KC C + G
Sbjct: 280 DDCDLPELCTGQSAECPTDVFQRNGLPCQNNQGY-CYNGKCPIMTNQCIALRGPGVKVSR 338
Query: 1031 LGCHKENSTCSSSQFRCNNG----KCIDYHLVCNKESDCEDDSDEPLHCN 1076
C N C + C + C+ + +C+
Sbjct: 339 DSCFTLNQRTRGCGLCRMEYGRKIPCAAKDVKCGR-LFCKRRNSMICNCS 387
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease,
disintegrin, calcium-binding, ADAM, SVMP, M protein,
toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A*
2erq_A*
Length = 427
Score = 31.9 bits (72), Expect = 1.7
Identities = 27/126 (21%), Positives = 35/126 (27%), Gaps = 24/126 (19%)
Query: 645 CVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNC 704
VE E CD CG C C C C
Sbjct: 227 FVEVGEECD----CGSPRTCRDPCCDATTCKLRQGAQCAEGLC----------------C 266
Query: 705 PKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCI 764
+C F+ C + CD + C +S E D + C + C NGKC
Sbjct: 267 DQCR----FKGAGTECRAAKDECDMADVCTGRSAECTDRFQRNGQPCKNNNGYCYNGKCP 322
Query: 765 PAQWRC 770
+C
Sbjct: 323 IMADQC 328
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 31.9 bits (71), Expect = 2.3
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 9/110 (8%)
Query: 324 RDCGDGSDEPMSCPARQCRAGSFQCDNGN---CTPSASICDGVDDCRDGSDEKHCDLPCP 380
C +S + + N C+ C D R + C+ P
Sbjct: 28 SRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESGDLRKHQCQSFCEPLFP 87
Query: 381 DLEFKCASNGRCILNSWKCDGEPD---CKDGSDEDPAMCHNRPCDKDTEF 427
++C ++ C + + + + A C C+ D E
Sbjct: 88 KKSYECLTS--CEFLKYILLVKQGDCPAPEKASGFAAACVES-CEVDNEC 134
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 31.2 bits (70), Expect = 2.9
Identities = 37/183 (20%), Positives = 65/183 (35%), Gaps = 28/183 (15%)
Query: 320 CDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPC 379
C +C + + +C + ++GS QC +G+C +CR E CD
Sbjct: 227 CGTPENCQNECCDAATC---KLKSGS-QCGHGDCCEQCKFSKSGTECRASMSE--CDPA- 279
Query: 380 PDLEFKCASNGRCILNSWKCDGEPDCKDGSDEDPAMCHNRPCDKDTEFACRNGHCIPKLW 439
E + C + + +G+P C D C+N C C L+
Sbjct: 280 ---EHCTGQSSECPADVFHKNGQP-CLDN----YGYCYNGNC------PIMYHQCY-DLF 324
Query: 440 VCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELP 499
D ++++ + Q+ G+ R C P+ + C G+ C+D S
Sbjct: 325 GAD-----VYEAEDSCFERNQKGNYYGYCRKENGNKIPCAPEDVKC-GRLYCKDNSPGQN 378
Query: 500 QNC 502
C
Sbjct: 379 NPC 381
Score = 30.0 bits (67), Expect = 6.7
Identities = 29/142 (20%), Positives = 38/142 (26%), Gaps = 25/142 (17%)
Query: 645 CVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDGSDELPQNC 704
+E E CD CG + + C C C G C
Sbjct: 218 LLEVGEECD----CGTPENCQNECCDAATCK-----------LKSGSQCGHG-----DCC 257
Query: 705 PKCHETTDFQCKNNRCIPKRWMCDFENDCGDQSDE-AEDLCAGAYRQCSESEFQCKNGKC 763
+C F C CD C QS E D+ + C ++ C NG C
Sbjct: 258 EQCK----FSKSGTECRASMSECDPAEHCTGQSSECPADVFHKNGQPCLDNYGYCYNGNC 313
Query: 764 IPAQWRCDHDEDCTDGSDEMEC 785
+C E C
Sbjct: 314 PIMYHQCYDLFGADVYEAEDSC 335
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 31.6 bits (70), Expect = 2.9
Identities = 48/422 (11%), Positives = 88/422 (20%), Gaps = 39/422 (9%)
Query: 279 CACPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGS--DEPMSC 336
+ + + ++C + C G + K C P C
Sbjct: 148 VRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGPNPNQC 207
Query: 337 PARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCILNS 396
+C G + +C CR +D C CP + N
Sbjct: 208 CHDECAGGCSGPQDTDCF----------ACRHFNDSGACVPRCPQPLVYNKLTFQLEPNP 257
Query: 397 WKCDGEPDCKDGSDEDPAMCHN----RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSD 452
S + R C D +NG + + C
Sbjct: 258 HTKYQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTGS 317
Query: 453 EPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQ 512
+ + G+ C D N +
Sbjct: 318 GSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFRTVREITGY 377
Query: 513 CKNNRCIPKRWMCDFENDC---------GDQSDEAEDLCAGAYRQCSESEFQCKNGKCIP 563
P ++ S + G+
Sbjct: 378 LNIQSWPPHMHNFSVFSNLTTIGGRSLYNRGFSLLIMKNLNVTSLGFRSLKEISAGRIYI 437
Query: 564 AQWRCDHDEDCTDGSDEMECGGFQCKNGTFQCSSGHCIAAYFRCDGD------------- 610
+ R + + + + + C+A CD
Sbjct: 438 SANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDPLCSSGGCWGPGPGQ 497
Query: 611 -RDCRDLSDEMNCPPRYPGGRFCPEYKFQCASTHLCVEQSELCDGTDDCGDNSDETSSLC 669
CR+ S C P A C + + +GT C + +T + C
Sbjct: 498 CLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQC 557
Query: 670 SN 671
++
Sbjct: 558 AH 559
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 31.4 bits (70), Expect = 2.9
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 19/114 (16%)
Query: 1183 DGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE----- 1237
D + L A + G T+HP G +YF+S+ + + ++ + T
Sbjct: 235 DDRSDIQLIAAYKQCNGATIHPINGELYFNSYE-KGQVFRLDLVDYFKTIKNGGSWDPIV 293
Query: 1238 -------------DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIV 1278
D +W + + + Y+ + Y D D K +
Sbjct: 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI 347
Score = 30.3 bits (67), Expect = 6.1
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 3/96 (3%)
Query: 1 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERAYIGKIGM---DGSNFTRILTHEDDIAW 57
H YF ++R + K G + N + L D +W
Sbjct: 252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSW 311
Query: 58 PNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIV 93
+ + + Y+ + Y D D K +
Sbjct: 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI 347
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 31.0 bits (71), Expect = 3.1
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 1486 IAVDWIAHNIYWTVSDRSGSKPKGKVMVAHNDGRYRRSLVSENLESPSSIALDP 1539
+AV + +I V++RS + ++ + + G++ R + L+ P + +D
Sbjct: 82 VAVVRNSGDII--VTERSPTH---QIQIYNQYGQFVRKFGATILQHPRGVTVDN 130
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 31.0 bits (69), Expect = 3.6
Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 13/133 (9%)
Query: 281 CPNQFYLDPRDNKTCVANCTQGQHHCGGHDQKCIPWFWKCDGERDCGDGSDEPMSCPARQ 340
N + + + K C C ++ I + C + CP+
Sbjct: 134 VSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTIN----NEYNYRCWTTNRCQKMCPS-T 188
Query: 341 CRAGSFQCDNGNCTPS-ASICDGVDD------CRDGSDEKHCDLPCPDLEFKCASNGRCI 393
C + +N C P C D+ CR C CP ++ RC+
Sbjct: 189 CGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRF-EGWRCV 247
Query: 394 LNSWKCDGEPDCK 406
+ +
Sbjct: 248 DRDFCANILSAES 260
Score = 30.6 bits (68), Expect = 5.6
Identities = 27/244 (11%), Positives = 56/244 (22%), Gaps = 27/244 (11%)
Query: 463 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPKCHETTDFQCKNNRCIPKR 522
T W + I D G+ E C K ++ + +
Sbjct: 123 STVDWSLILDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQ 182
Query: 523 WMCDFENDCGDQSDEAEDLCAGAYRQCSESEFQCKNGKCIPAQWRCDHDEDCTDGSDEME 582
MC ++ +C + +C+ + D+D C
Sbjct: 183 KMCPSTC----------------GKRACTENNECCHPECLGSCSAPDNDTACVACRHYYY 226
Query: 583 CGGF--QCKNGTFQCSSGHCIAAYFRCDGDRDCRDLSDEMNCPPRYPGG----RFCPEYK 636
G C T++ C+ F + + + CP
Sbjct: 227 AGVCVPACPPNTYRFEGWRCVDRDFCANILSAESS-----DSEGFVIHDGECMQECPSGF 281
Query: 637 FQCASTHLCVEQSELCDGTDDCGDNSDETSSLCSNMNCTSLHKCIPKWLFCDGKDDCRDG 696
+ S + E + +T ++ L + +
Sbjct: 282 IRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQGCTIFKGNLLINIRRGNNIA 341
Query: 697 SDEL 700
S+
Sbjct: 342 SELE 345
>3eto_A Neurogenic locus notch homolog protein 1; alpha-beta sandwich, HD
domain, LNR repeat, calcium-binding, domain,
autoinhibition, activator, T-all; 2.00A {Homo sapiens}
PDB: 3l95_X* 3i08_B 1pb5_A
Length = 242
Score = 30.5 bits (68), Expect = 3.6
Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 19/130 (14%)
Query: 335 SCPARQCRAGSFQCDNGNCTPSASICDGVDDCRDGSDEKHCDLPCPDLEFKCASNGRCI- 393
+C +C+ N C+ + D D C L D C + +C
Sbjct: 4 ACELPECQED---AGNKVCSLQCNNHACGWDGGD------CSLNFNDPWKNCTQSLQCWK 54
Query: 394 -LNSWKCDGEPDCKD-GSDEDPAMCHNRPCDKDTEFACR----NGHCIPKLWVCD---FD 444
+ CD + + D C+ + C+ +GHC +
Sbjct: 55 YFSDGHCDSQCNSAGCLFDGFDCQRAEGQCNPLYDQYCKDHFSDGHCDQGCNSAECEWDG 114
Query: 445 NDCGDDSDEP 454
DC + E
Sbjct: 115 LDCAEHVPER 124
>1szb_A Mannose binding lectin-associated serine protease-2 related protein,
MAP19 (19KDA)...; calcium, complement, innate immunity,
CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Length = 170
Score = 29.9 bits (67), Expect = 3.9
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 1355 DVDECAT---GIHHCSQVCTNLNGTYACSCNAGFTLSD 1389
D+DEC C C N G + CSC AG+ L
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHR 160
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 29.3 bits (66), Expect = 4.7
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 15/76 (19%)
Query: 1326 CMNITGGSGYLCTCYQGF--------IIDKNNAKKCLDVDECATGI-------HHCSQVC 1370
C+ + C C GF + ++ ++ C
Sbjct: 14 CLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYR 73
Query: 1371 TNLNGTYACSCNAGFT 1386
+ Y C C GF
Sbjct: 74 GDTFIGYVCKCPRGFN 89
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor; 1.50A
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 26.7 bits (60), Expect = 5.8
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 1076 NVDECAKVETNQC--GHKCVDTLTGYYCECNTGY 1107
+ D+C +N C G C D + Y C C G+
Sbjct: 2 DGDQCE---SNPCLNGGSCKDDINSYECWCPFGF 32
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 29.5 bits (65), Expect = 9.3
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 9/137 (6%)
Query: 249 CSHLCLLSPVPGVDRAPDMYADARSPVSYTCAC-PNQFYLDPRDNKTCVANCTQGQHH-C 306
HL + Y+ + C C + D +D QH+ C
Sbjct: 236 LGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTC 295
Query: 307 GGHDQKCIPWF----WKCDGERDCGDGSDEPMSCPARQCRAGSFQCDNGNCTPSASICDG 362
GG +C P F WK + A C ++ G
Sbjct: 296 GGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQG 355
Query: 363 V---DDCRDGSDEKHCD 376
DC+ + +C+
Sbjct: 356 GGVCLDCQHHTTGINCE 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.468
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 25,369,907
Number of extensions: 1641990
Number of successful extensions: 8265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5167
Number of HSP's successfully gapped: 1424
Length of query: 1576
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1470
Effective length of database: 3,742,167
Effective search space: 5500985490
Effective search space used: 5500985490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.8 bits)