BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9480
(395 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 138/305 (45%), Gaps = 55/305 (18%)
Query: 83 INHFPGMANLESKAFLAY------HLNRMRNHFPEDYDFYPRSWSLPY------------ 124
+N++ G L KA L L+ FPE Y YP + P
Sbjct: 62 VNYYRGADKLCRKASLVKLIKTSPELSESCTWFPESYVIYPTNLKTPVAPAQNGIRHLIN 121
Query: 125 -----QQEDFLS-YVREHPHQ---VFISKPSRGAEGKGIKIFNTLEEARGIYTES----V 171
++E FL+ Y R + V+I+K S GA+G+GI I + E E V
Sbjct: 122 NTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILISSEASELLDFIDEQGQVHV 181
Query: 172 SQLYMSNLLLMDGF--KFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQ 229
Q Y+ LL++ KFD+R +VL+ + I++Y G++R ++ Y S N ++
Sbjct: 182 IQKYLEKPLLLEPGHRKFDIRSWVLVDHL--YNIYLYREGVLRTSSEPYNS---ANFQDK 236
Query: 230 YMHLTNYSVNKS-SENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNXXXXXXXXXXXS 288
HLTN+ + K S+NY + E G++ F N +L+ LN+T L N S
Sbjct: 237 TCHLTNHCIQKEYSKNYGRY-EEGNEMFFEEFNQYLMD-ALNTT-LENSILLQIKHIIRS 293
Query: 289 VYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN-------I 341
++ + +H H+ SF++ GFD ++D +K +L+EVN +P+
Sbjct: 294 CLMCIEPA---ISTKHLHYQ---SFQLFGFDFMVDEELKVWLIEVNGAPACAQKLYAELC 347
Query: 342 AGIVD 346
GIVD
Sbjct: 348 QGIVD 352
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 134/308 (43%), Gaps = 61/308 (19%)
Query: 83 INHFPGMANLESKAFLAY------HLNRMRNHFPEDYDFYPRSWSLPY------------ 124
+N++ G L KA L L FPE Y YP + P
Sbjct: 65 VNYYRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRARNGLPDLAN 124
Query: 125 -----QQEDFLSYVREHPHQ----VFISKPSRGAEGKGIKIFNTLEEARGIYTES----V 171
++E+F S + V+I+K S GA+G+GI I + E V
Sbjct: 125 APRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDNQGQVHV 184
Query: 172 SQLYM-SNLLLMDGF-KFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQ 229
Q Y+ S LLL G KFD+R +VL+ + I++Y G++R ++ Y+ ++T+
Sbjct: 185 IQKYLESPLLLEPGHRKFDIRSWVLVD--NQYNIYLYREGVLRTSSEPYSDTNFQDMTS- 241
Query: 230 YMHLTNYSVNKS-SENYNKSPERGSKRDFTALNSWLLSQGLN---STKLWNXXXXXXXXX 285
HLTN+ + K S+NY + E G++ F N +L++ LN +
Sbjct: 242 --HLTNHCIQKEHSKNYGRY-EEGNEMFFEEFNQYLVT-SLNINLENSILCQIKEIIRVC 297
Query: 286 XXSVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN----- 340
+ P + KY LP H SF++ GFD ++D +K +L+EVN +P+
Sbjct: 298 LSCLEPAISTKY---LPYH-------SFQLFGFDFMVDKNLKVWLIEVNGAPACAQKLYA 347
Query: 341 --IAGIVD 346
GIVD
Sbjct: 348 ELCKGIVD 355
>pdb|1Y0K|A Chain A, Structure Of Protein Of Unknown Function Pa4535 From
Pseudomonas Aeruginosa Strain Pao1, Monooxygenase
Superfamily
Length = 209
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 121 SLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQL 174
++PY+QEDF + + P +F +G G ++F L+E R + E +L
Sbjct: 42 NVPYRQEDFAAPGEQPPDVLF--------KGAGFEVFFVLDEGRRLNEEWREEL 87
>pdb|3SC0|A Chain A, Crystal Structure Of Mmachc (1-238), A Human B12
Processing Enzyme, Complexed With Methylcobalamin
Length = 241
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 289 VYPILKEKYEDLLPEHYHHNVSA---SFEILGFDILIDSTMKPFL 330
VYP Y +LLP +H + +F +L + D +KPFL
Sbjct: 26 VYPFQVAWYNELLPPAFHLPLPGPTLAFLVLSTPAMFDRALKPFL 70
>pdb|3SBZ|A Chain A, Crystal Structure Of Apo-Mmachc (1-244), A Human B12
Processing Enzyme
Length = 252
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 289 VYPILKEKYEDLLPEHYHHNVSA---SFEILGFDILIDSTMKPFL 330
VYP Y +LLP +H + +F +L + D +KPFL
Sbjct: 23 VYPFQVAWYNELLPPAFHLPLPGPTLAFLVLSTPAMFDRALKPFL 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,356,369
Number of Sequences: 62578
Number of extensions: 463652
Number of successful extensions: 1210
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1200
Number of HSP's gapped (non-prelim): 11
length of query: 395
length of database: 14,973,337
effective HSP length: 101
effective length of query: 294
effective length of database: 8,652,959
effective search space: 2543969946
effective search space used: 2543969946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)