Query psy9480
Match_columns 395
No_of_seqs 219 out of 1477
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 20:30:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2156|consensus 100.0 2.9E-69 6.4E-74 528.4 21.3 354 3-366 165-529 (662)
2 PF03133 TTL: Tubulin-tyrosine 100.0 1.9E-65 4.2E-70 496.0 14.2 275 77-363 4-286 (292)
3 KOG2157|consensus 100.0 7E-55 1.5E-59 439.2 24.0 326 29-369 76-433 (497)
4 KOG2158|consensus 100.0 7.3E-54 1.6E-58 415.3 6.8 275 80-363 172-450 (565)
5 KOG2155|consensus 100.0 1.2E-37 2.6E-42 300.6 12.6 303 34-368 308-625 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.9 3E-25 6.6E-30 211.5 21.3 213 92-361 16-258 (262)
7 PF08443 RimK: RimK-like ATP-g 99.3 3.4E-11 7.4E-16 109.5 10.6 147 116-342 18-174 (190)
8 TIGR02291 rimK_rel_E_lig alpha 99.2 3.5E-10 7.5E-15 110.1 15.2 193 83-340 26-273 (317)
9 PLN02941 inositol-tetrakisphos 99.2 1E-09 2.3E-14 107.4 17.8 149 40-194 40-205 (328)
10 TIGR02144 LysX_arch Lysine bio 99.1 1.6E-09 3.4E-14 104.1 16.0 71 116-194 102-183 (280)
11 PRK10446 ribosomal protein S6 99.1 8.5E-10 1.9E-14 107.4 14.3 149 115-341 113-269 (300)
12 TIGR00768 rimK_fam alpha-L-glu 99.1 9.8E-10 2.1E-14 104.9 14.3 88 92-194 86-184 (277)
13 COG0189 RimK Glutathione synth 99.1 2.3E-09 4.9E-14 105.0 15.2 178 82-341 107-293 (318)
14 PF07478 Dala_Dala_lig_C: D-al 99.1 5.4E-09 1.2E-13 96.2 15.1 139 138-345 33-183 (203)
15 PRK01966 ddl D-alanyl-alanine 99.0 1.1E-08 2.3E-13 101.2 17.9 141 138-345 162-309 (333)
16 PF13535 ATP-grasp_4: ATP-gras 99.0 9.2E-09 2E-13 91.8 15.7 88 92-194 2-100 (184)
17 PF14397 ATPgrasp_ST: Sugar-tr 99.0 1.9E-08 4.2E-13 97.2 17.8 218 84-342 16-265 (285)
18 PRK14568 vanB D-alanine--D-lac 99.0 9.4E-09 2E-13 102.0 16.0 147 138-345 165-318 (343)
19 PRK14570 D-alanyl-alanine synt 99.0 2.8E-08 6E-13 99.4 18.2 162 138-362 171-347 (364)
20 PRK14571 D-alanyl-alanine synt 99.0 3.1E-08 6.8E-13 96.3 17.7 142 138-345 125-273 (299)
21 PRK01372 ddl D-alanine--D-alan 99.0 4.8E-08 1E-12 95.0 18.9 157 116-343 113-276 (304)
22 TIGR01205 D_ala_D_alaTIGR D-al 98.9 6.5E-08 1.4E-12 94.5 18.4 139 138-344 146-292 (315)
23 PRK14569 D-alanyl-alanine synt 98.9 5.8E-08 1.2E-12 94.4 16.8 138 138-345 130-273 (296)
24 PRK05246 glutathione synthetas 98.9 1.9E-08 4E-13 98.8 12.4 72 115-194 134-214 (316)
25 PRK14572 D-alanyl-alanine synt 98.8 1.1E-07 2.4E-12 94.5 17.1 160 138-360 171-344 (347)
26 TIGR03103 trio_acet_GNAT GNAT- 98.8 1.5E-07 3.2E-12 98.9 16.4 84 93-194 296-387 (547)
27 PRK12458 glutathione synthetas 98.7 2E-07 4.2E-12 92.4 14.6 97 82-194 117-221 (338)
28 TIGR01161 purK phosphoribosyla 98.7 8.7E-07 1.9E-11 88.2 17.8 76 93-177 97-178 (352)
29 PF02655 ATP-grasp_3: ATP-gras 98.7 6.8E-08 1.5E-12 85.5 8.8 68 94-177 3-71 (161)
30 PLN02257 phosphoribosylamine-- 98.6 2.5E-06 5.5E-11 87.3 17.6 53 311-363 263-316 (434)
31 PF02955 GSH-S_ATP: Prokaryoti 98.6 8.3E-07 1.8E-11 79.4 11.9 87 114-216 10-105 (173)
32 PRK06849 hypothetical protein; 98.5 2.4E-06 5.2E-11 86.2 16.2 87 92-192 114-204 (389)
33 TIGR01380 glut_syn glutathione 98.5 2.6E-06 5.6E-11 83.5 15.4 73 114-194 132-213 (312)
34 PRK12767 carbamoyl phosphate s 98.5 2.9E-06 6.2E-11 83.2 15.3 89 91-193 108-200 (326)
35 TIGR01142 purT phosphoribosylg 98.5 5.3E-06 1.2E-10 83.2 16.1 60 116-177 116-186 (380)
36 PRK07206 hypothetical protein; 98.4 3.3E-06 7.3E-11 85.8 14.4 87 92-192 106-208 (416)
37 PRK06019 phosphoribosylaminoim 98.4 1.3E-05 2.7E-10 80.6 18.3 150 116-340 115-270 (372)
38 COG1181 DdlA D-alanine-D-alani 98.4 3.3E-06 7.2E-11 82.7 13.4 151 131-345 135-294 (317)
39 COG1821 Predicted ATP-utilizin 98.4 1.4E-06 3.1E-11 80.8 9.6 34 138-177 138-171 (307)
40 PRK14573 bifunctional D-alanyl 98.4 1E-05 2.2E-10 89.2 17.8 148 138-345 610-764 (809)
41 PRK14016 cyanophycin synthetas 98.3 9.7E-06 2.1E-10 88.1 15.6 86 92-194 212-305 (727)
42 PRK00885 phosphoribosylamine-- 98.3 5.4E-05 1.2E-09 77.2 20.0 201 93-364 101-315 (420)
43 TIGR00514 accC acetyl-CoA carb 98.3 2.1E-05 4.6E-10 80.9 17.1 79 92-178 113-205 (449)
44 PRK13789 phosphoribosylamine-- 98.3 4.5E-05 9.6E-10 78.0 18.5 51 311-361 269-319 (426)
45 TIGR02068 cya_phycin_syn cyano 98.3 1.6E-05 3.4E-10 88.1 16.2 86 92-194 211-304 (864)
46 PRK13790 phosphoribosylamine-- 98.3 6.5E-05 1.4E-09 75.7 19.1 86 93-193 66-160 (379)
47 TIGR00877 purD phosphoribosyla 98.3 6.6E-05 1.4E-09 76.5 19.4 77 92-177 102-191 (423)
48 PRK05586 biotin carboxylase; V 98.3 5.3E-05 1.2E-09 77.9 18.6 53 125-178 140-205 (447)
49 TIGR01235 pyruv_carbox pyruvat 98.3 4.2E-05 9.1E-10 86.4 19.1 171 92-340 113-296 (1143)
50 PRK06111 acetyl-CoA carboxylas 98.2 4E-05 8.8E-10 78.7 16.9 77 92-177 113-204 (450)
51 PRK06524 biotin carboxylase-li 98.2 3.7E-05 8E-10 79.0 16.2 137 138-340 181-326 (493)
52 PRK08462 biotin carboxylase; V 98.2 4.9E-05 1.1E-09 78.1 17.3 80 92-178 115-207 (445)
53 PRK08591 acetyl-CoA carboxylas 98.2 3.2E-05 7E-10 79.5 15.9 52 125-177 140-204 (451)
54 PRK12833 acetyl-CoA carboxylas 98.2 7.1E-05 1.5E-09 77.5 17.6 53 125-178 143-208 (467)
55 PRK09288 purT phosphoribosylgl 98.2 4.4E-05 9.6E-10 77.0 15.5 60 116-177 129-199 (395)
56 PRK08463 acetyl-CoA carboxylas 98.2 8.6E-05 1.9E-09 77.1 17.5 81 91-178 111-205 (478)
57 TIGR01435 glu_cys_lig_rel glut 98.2 3.1E-05 6.6E-10 83.4 14.3 86 93-194 474-569 (737)
58 PRK02186 argininosuccinate lya 98.1 4.4E-05 9.5E-10 85.0 14.7 71 116-194 122-200 (887)
59 PRK07178 pyruvate carboxylase 98.1 0.00014 3.1E-09 75.4 17.3 80 92-178 112-204 (472)
60 PLN02948 phosphoribosylaminoim 98.1 0.00014 2.9E-09 77.2 17.4 48 272-340 246-293 (577)
61 PRK02471 bifunctional glutamat 98.1 5.9E-05 1.3E-09 82.1 14.9 86 93-194 487-582 (752)
62 PRK06395 phosphoribosylamine-- 98.1 0.00038 8.3E-09 71.4 19.5 75 272-363 245-319 (435)
63 PRK12999 pyruvate carboxylase; 98.0 0.00016 3.5E-09 82.0 17.2 63 115-178 134-209 (1146)
64 PRK08654 pyruvate carboxylase 98.0 0.00021 4.5E-09 74.6 16.5 81 91-178 112-205 (499)
65 PRK13277 5-formaminoimidazole- 98.0 0.00012 2.6E-09 72.4 13.7 50 138-193 152-217 (366)
66 PRK13278 purP 5-formaminoimida 98.0 0.00015 3.2E-09 72.3 14.3 144 139-337 150-312 (358)
67 PRK05294 carB carbamoyl phosph 97.9 0.00027 5.9E-09 80.2 17.2 85 93-192 668-762 (1066)
68 TIGR01369 CPSaseII_lrg carbamo 97.9 0.00029 6.3E-09 79.8 17.3 71 116-193 684-763 (1050)
69 PF15632 ATPgrasp_Ter: ATP-gra 97.9 0.00029 6.2E-09 69.3 14.1 78 92-177 105-207 (329)
70 PRK05784 phosphoribosylamine-- 97.9 0.00044 9.6E-09 71.8 15.9 77 272-363 260-336 (486)
71 PF05770 Ins134_P3_kin: Inosit 97.8 0.0006 1.3E-08 66.4 14.1 100 89-194 88-191 (307)
72 PLN02735 carbamoyl-phosphate s 97.8 0.00073 1.6E-08 76.7 16.6 61 116-177 159-228 (1102)
73 PF01071 GARS_A: Phosphoribosy 97.7 0.0012 2.7E-08 60.0 15.0 53 125-177 25-90 (194)
74 PLN02735 carbamoyl-phosphate s 97.7 0.00055 1.2E-08 77.7 15.2 69 116-191 717-794 (1102)
75 PRK12815 carB carbamoyl phosph 97.7 0.00089 1.9E-08 76.0 16.8 68 116-191 685-759 (1068)
76 PRK05294 carB carbamoyl phosph 97.7 0.00061 1.3E-08 77.4 14.3 60 116-177 143-211 (1066)
77 TIGR01369 CPSaseII_lrg carbamo 97.6 0.0014 3E-08 74.4 15.2 60 116-177 142-210 (1050)
78 COG0439 AccC Biotin carboxylas 97.5 0.0039 8.4E-08 63.8 16.3 65 114-179 129-206 (449)
79 TIGR02712 urea_carbox urea car 97.5 0.0061 1.3E-07 69.9 19.3 62 115-178 129-203 (1201)
80 PRK12815 carB carbamoyl phosph 97.3 0.0032 7E-08 71.6 13.6 60 116-177 143-211 (1068)
81 PF02222 ATP-grasp: ATP-grasp 97.2 0.032 6.9E-07 50.0 16.4 125 138-340 28-164 (172)
82 PF02786 CPSase_L_D2: Carbamoy 97.1 0.024 5.3E-07 52.4 15.1 175 114-363 15-205 (211)
83 COG1038 PycA Pyruvate carboxyl 96.8 0.014 2.9E-07 62.5 12.2 93 87-180 86-213 (1149)
84 PF14403 CP_ATPgrasp_2: Circul 96.6 0.0081 1.8E-07 61.3 8.8 173 36-218 200-428 (445)
85 COG2232 Predicted ATP-dependen 96.6 0.0056 1.2E-07 59.3 7.0 45 138-191 149-193 (389)
86 COG4770 Acetyl/propionyl-CoA c 96.5 0.046 1E-06 56.6 13.1 180 113-366 128-321 (645)
87 PF02750 Synapsin_C: Synapsin, 96.4 0.029 6.3E-07 50.7 9.9 91 91-194 8-106 (203)
88 KOG0369|consensus 96.1 0.031 6.7E-07 58.8 9.4 96 81-180 105-239 (1176)
89 COG0151 PurD Phosphoribosylami 96.0 0.32 7E-06 49.0 15.9 174 125-363 126-315 (428)
90 COG0027 PurT Formate-dependent 95.9 0.11 2.3E-06 50.4 11.4 65 120-194 132-207 (394)
91 KOG3895|consensus 95.5 0.12 2.6E-06 50.6 10.3 190 83-359 189-391 (488)
92 KOG0238|consensus 95.3 1.2 2.5E-05 46.0 16.7 66 114-180 125-203 (670)
93 KOG2158|consensus 94.2 0.015 3.3E-07 58.6 0.3 60 309-369 11-70 (565)
94 COG2308 Uncharacterized conser 93.2 0.42 9.1E-06 48.4 8.5 125 83-216 312-456 (488)
95 COG3919 Predicted ATP-grasp en 92.0 0.99 2.2E-05 43.6 9.0 75 91-177 111-200 (415)
96 TIGR02049 gshA_ferroox glutama 91.2 1.4 3.1E-05 43.7 9.3 88 136-238 255-362 (403)
97 COG0458 CarB Carbamoylphosphat 90.8 4.8 0.0001 40.6 12.8 27 139-165 151-177 (400)
98 PF08886 GshA: Glutamate-cyste 90.2 0.79 1.7E-05 45.6 6.7 138 91-239 187-366 (404)
99 COG1759 5-formaminoimidazole-4 83.2 11 0.00023 37.0 9.9 52 115-177 138-203 (361)
100 PF04174 CP_ATPgrasp_1: A circ 82.3 1.4 3E-05 43.6 3.7 52 312-363 67-119 (330)
101 PHA02117 glutathionylspermidin 79.1 2.9 6.2E-05 42.5 4.8 54 140-194 309-367 (397)
102 PRK10507 bifunctional glutathi 77.5 10 0.00022 40.7 8.5 86 92-192 495-586 (619)
103 PF04174 CP_ATPgrasp_1: A circ 72.7 1.2 2.6E-05 44.0 0.1 73 83-161 234-310 (330)
104 PF14305 ATPgrasp_TupA: TupA-l 70.8 47 0.001 31.2 10.4 68 84-159 10-77 (239)
105 PF07065 D123: D123; InterPro 63.7 77 0.0017 31.0 10.5 25 314-338 215-240 (299)
106 KOG0237|consensus 63.1 1.8E+02 0.0038 31.3 13.3 56 119-177 128-196 (788)
107 COG2308 Uncharacterized conser 57.3 65 0.0014 33.1 8.9 55 310-364 142-197 (488)
108 COG0754 Gsp Glutathionylspermi 50.3 30 0.00065 34.5 5.1 76 91-179 262-343 (387)
109 PF14243 DUF4343: Domain of un 48.5 20 0.00043 30.4 3.3 27 314-340 93-119 (130)
110 PF14847 Ras_bdg_2: Ras-bindin 48.2 22 0.00049 29.1 3.4 38 27-67 11-50 (105)
111 KOG2983|consensus 41.7 1E+02 0.0022 29.6 6.9 22 314-335 229-250 (334)
112 COG0026 PurK Phosphoribosylami 39.6 4.2E+02 0.009 26.8 17.3 88 83-177 85-180 (375)
113 PF04556 DpnII: DpnII restrict 38.8 26 0.00057 33.9 2.8 24 317-340 197-220 (286)
114 TIGR01016 sucCoAbeta succinyl- 32.3 1.7E+02 0.0038 29.3 7.7 25 139-163 41-69 (386)
115 PF08814 XisH: XisH protein; 30.2 47 0.001 28.4 2.7 28 38-68 8-35 (135)
116 PHA02117 glutathionylspermidin 29.2 48 0.001 33.8 3.0 27 314-340 106-134 (397)
117 PF08442 ATP-grasp_2: ATP-gras 25.2 95 0.0021 28.4 3.9 46 116-164 18-69 (202)
118 PF00919 UPF0004: Uncharacteri 24.9 1.3E+02 0.0029 24.0 4.4 28 38-66 16-43 (98)
119 KOG2157|consensus 24.8 79 0.0017 33.1 3.7 49 168-220 263-311 (497)
120 COG0754 Gsp Glutathionylspermi 24.7 65 0.0014 32.2 2.9 24 317-340 101-125 (387)
121 PF10281 Ish1: Putative stress 23.6 70 0.0015 20.7 2.0 19 254-272 3-21 (38)
122 PF13020 DUF3883: Domain of un 22.9 67 0.0015 25.1 2.2 22 316-337 29-51 (91)
123 PF13635 DUF4143: Domain of un 22.5 79 0.0017 24.5 2.6 19 317-335 71-89 (90)
124 KOG0782|consensus 22.1 31 0.00066 36.4 0.1 39 137-176 351-389 (1004)
125 PF07494 Reg_prop: Two compone 20.4 1.1E+02 0.0023 17.7 2.1 13 318-330 8-20 (24)
No 1
>KOG2156|consensus
Probab=100.00 E-value=2.9e-69 Score=528.37 Aligned_cols=354 Identities=33% Similarity=0.568 Sum_probs=314.8
Q ss_pred CCCcCCCcccccc--CCCcccCCCCCCceEEEeCCCc----HHHHHHHHHhCCCEEecCCCCCeEEEEcccCCChhhhhc
Q psy9480 3 AAPRLGELWENEA--GTSTQALRPRPKEATINLKRCM----YKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKS 76 (395)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~g~~~~~~~~~~~~i~W~~~~~~~~~~~~ 76 (395)
|+|.+-.-=||.. +++..++.+.|+.+-.-+..+- -.+|++++...||++++..+ +|..+|+.. .....++.
T Consensus 165 v~PSlfp~VpP~i~f~s~~~k~~k~p~~~~~vl~w~~t~~~p~vv~~vl~~sgfkivk~n~-dw~g~Wg~h-~ksp~fr~ 242 (662)
T KOG2156|consen 165 VLPSLFPRVPPTILFDSSADKVPKPPPPLHAVLKWKPTEVMPKVVRQVLANSGFKIVKVND-DWMGVWGHH-LKSPSFRA 242 (662)
T ss_pred echhhcCCCCCeeeeccccccCCCCChhHHHHhccCCcchhHHHHHHHHHhcccEEecccc-hHHHHhhhh-cCCchhhh
Confidence 4565555556666 4555666655555555555543 35889999999999999998 999999985 55566788
Q ss_pred CCccceecccCCCCcccchHHHHHHHHHHHhhCCC-CCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceE
Q psy9480 77 MEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPE-DYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIK 155 (395)
Q Consensus 77 l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~-~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~ 155 (395)
+.++|+||||||+.-|+|||.|++++.++..++.. +++|+|+||+||.|+++|.++++++....|||||.+.+||.||.
T Consensus 243 ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~kef~fmPrtyilP~d~e~lrk~w~~nasr~wIVkppasaRg~gIr 322 (662)
T KOG2156|consen 243 IRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGKKEFGFMPRTYILPADREELRKYWEKNASRLWIVKPPASARGIGIR 322 (662)
T ss_pred hhhhhhhccCCCccccccchHHHHHHHHHHHHhcccccCccceeeeccccHHHHHHHHhhCccccEEecCcccccCcceE
Confidence 99999999999999999999999999999988875 89999999999999999999999988888999999999999999
Q ss_pred eeCChHHHhcccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecc
Q psy9480 156 IFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTN 235 (395)
Q Consensus 156 li~~~~~i~~~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN 235 (395)
++++..++ ....+.|||+||++|+||+|.|||+|+||.|||.+||+||+|++|++|||+.+|.+. .+++.|.+||+||
T Consensus 323 v~~kw~q~-pk~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRIy~y~dgL~RFasvkYsp~-~a~~~dKymhltn 400 (662)
T KOG2156|consen 323 VINKWSQF-PKDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRIYIYNDGLVRFASVKYSPF-DANNVDKYMHLTN 400 (662)
T ss_pred eccchhhC-CCcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEEEEeccceeeeccccCCcc-cccccceeEEecc
Confidence 99999999 778889999999999999999999999999999999999999999999999999974 4778899999999
Q ss_pred cccccCCCCCCCCCC----CCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCC
Q psy9480 236 YSVNKSSENYNKSPE----RGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSA 311 (395)
Q Consensus 236 ~~i~k~~~~~~~~~~----~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 311 (395)
|+++|.+. |...+. .|++|++.+++.++..+|++.++||.+|+++|.+++++.+..+...++.... ....
T Consensus 401 Ys~nke~~-ys~~k~~n~~~g~kwtl~~lw~~l~~qGvdt~kIW~qir~iV~kti~s~E~~i~~~lr~~~~-----~~~~ 474 (662)
T KOG2156|consen 401 YSPNKESN-YSLNKYFNACQGSKWTLKSLWLYLDNQGVDTDKIWEQIRNIVIKTIISGEKGINSMLRNYVE-----NPYS 474 (662)
T ss_pred ccccccch-hhhhhHHhhcCCchhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccChhHHHHHHHHhc-----CCch
Confidence 99999877 544332 7999999999999999999999999999999999999999988887776543 3467
Q ss_pred ceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcccccc
Q psy9480 312 SFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQN 366 (395)
Q Consensus 312 ~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~~~~ 366 (395)
|||++||||++|++++|||||||.+|++...+++|-.+|..||.++|+++++...
T Consensus 475 CfELfgFDiilDedLkpwLlEVNISPSLhS~tpld~~vk~~li~~vlNlagi~~p 529 (662)
T KOG2156|consen 475 CFELFGFDIILDEDLKPWLLEVNISPSLHSETPLDCSVKAPLIQDVLNLAGIKVP 529 (662)
T ss_pred hhhhhcceEEecCccceeeEEEecccccccCCCccchhhhHHHHHHHHhcceecC
Confidence 9999999999999999999999999999999999999999999999999998543
No 2
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=1.9e-65 Score=496.03 Aligned_cols=275 Identities=41% Similarity=0.770 Sum_probs=156.7
Q ss_pred CCccceecccCCCCcccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEe
Q psy9480 77 MEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKI 156 (395)
Q Consensus 77 l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~l 156 (395)
..++|+||||||++.|++|+.|+++++++.+..+..++|+|+||.||.+.++|...+.+.+.+.||+||+++++|+||++
T Consensus 4 ~~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~~~~~~~p~t~~l~~~~~~~~~~~~~~~~~~wI~KP~~~~rG~GI~l 83 (292)
T PF03133_consen 4 MKPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFPKEFDFYPETFILPQDYKEFLKYFEKNPKNLWIVKPSNGSRGRGIKL 83 (292)
T ss_dssp -CHHTT-TSS--EEEE-----------------------------HHHHHHHHHHHHHTTS---EEEEES-------EEE
T ss_pred CCCCeeEccCCCCchhhhhHHHHHHHHHHHhhcCCcccCCcceEecHHHHHHHHHHHhcCCCCEEEEeccccCCCCCcee
Confidence 45689999999999999999999999999998887899999999999999999999988777899999999999999999
Q ss_pred eCChHHHhc----ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccce
Q psy9480 157 FNTLEEARG----IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMH 232 (395)
Q Consensus 157 i~~~~~i~~----~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~H 232 (395)
+++.+++.. ....+|||+||++|+|++|||||||+||+|+|.+||+||+|++|++|+|+++|+. ...++.+.++|
T Consensus 84 ~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y~~g~vR~~~~~Y~~-~~~~~~~~~~H 162 (292)
T PF03133_consen 84 FNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLYKEGYVRFASEPYDP-DLDDLSDRFAH 162 (292)
T ss_dssp ES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEES--EEEE-SS----------------
T ss_pred cCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeeccCceEEeccceeec-ccccccccccc
Confidence 999999963 5678999999999999999999999999999999999999999999999999994 33788999999
Q ss_pred ecccccccCCC---CCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHc-hHHHHHhhhhcCcccCCC
Q psy9480 233 LTNYSVNKSSE---NYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVY-PILKEKYEDLLPEHYHHN 308 (395)
Q Consensus 233 LTN~~i~k~~~---~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~-~~l~~~~~~~~~~~~~~~ 308 (395)
|||+++|+..+ .+.... .+++|++..+.+++.. |.+++.+|++|.+++.+++.++. ..... . . ..
T Consensus 163 lTN~~i~k~~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~i~~~i~~~~~~~~~~~~~~---~----~--~~ 231 (292)
T PF03133_consen 163 LTNYSIQKKSESNEEDSNEE-NGNKWSLDQFEEYLKE-GIDWEKIWEKICDIIIKTILAAEFRSSQP---N----M--PP 231 (292)
T ss_dssp ----------------------EEEHHHHHHHCTTTS-SS-STTTCHHHHHHHHHHHHHH-HHHHH---------T--TS
T ss_pred cccccccccccccccccccc-ccccchhhhhhhhccc-CCCcccchhhhhHHHHHHhhhhhhhhccc---c----c--cc
Confidence 99999999843 222222 5889999999999988 88999999999999999998884 21111 1 1 34
Q ss_pred CCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhccc
Q psy9480 309 VSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNL 363 (395)
Q Consensus 309 ~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~ 363 (395)
+.+|||+||+|||||++++|||||||++|++..+++.+..++++|++|+|+++..
T Consensus 232 ~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~~~~~~~li~d~l~i~v~ 286 (292)
T PF03133_consen 232 RPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVDKELKPQLIDDLLKIVVD 286 (292)
T ss_dssp SSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTHHHHHHHHHHHTTTTTS-
T ss_pred cccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhHHHHHHHHHHHHhEEEeC
Confidence 5689999999999999999999999999999999999999999999999996644
No 3
>KOG2157|consensus
Probab=100.00 E-value=7e-55 Score=439.21 Aligned_cols=326 Identities=28% Similarity=0.444 Sum_probs=280.5
Q ss_pred eEEEeCCCcHHHHHHHHHhCCCEEecCCCCCeEEEEcccCCChhhhhcCCcc-ceecccCCCCcccchHHHHHHHHHHHh
Q psy9480 29 ATINLKRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVSTVMSKSMEVY-HRINHFPGMANLESKAFLAYHLNRMRN 107 (395)
Q Consensus 29 ~~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~i~W~~~~~~~~~~~~l~~~-q~vNh~p~~~~l~~K~~L~~~l~~~~~ 107 (395)
+.+.....+--+|++++.+.||..+....++|+++|.+..........+.++ |++||||+..+|++|+.|+.++++++.
T Consensus 76 i~y~~~~~~~~~i~~~~~~~G~l~~~~~~~~~~f~w~~~~~~~~~~~~~~p~~~~~~~~p~~~~L~rkd~l~~~i~r~~~ 155 (497)
T KOG2157|consen 76 IKYRTQEKEPKLLNNFLNREGWLQFTESAEDWNFYWRGYEGIDFDFSWLAPYNQVVNHFPRRKELTRKDLLMKLIKRYLA 155 (497)
T ss_pred eEEEecccchHHHHHHHhhcceeeecccccceEEEEeccccccHHHhhhcchhhhhhccccHHHhhhhHHhhhhHHHHHH
Confidence 4444445556789999999999999966559999999976555555667787 999999999999999999999999999
Q ss_pred hCCC------------CCCcccCeeeccchHHHHHHHHHc-CCCcEEEEcCCCCCCCCceEeeCChHHHhcc--------
Q psy9480 108 HFPE------------DYDFYPRSWSLPYQQEDFLSYVRE-HPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------- 166 (395)
Q Consensus 108 ~~~~------------~~~~~P~T~~Lp~~~~~f~~~~~~-~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------- 166 (395)
.++. ..+|.|.|+.+|.+...|...+++ ...+.||+||++.++|+||++++.++++.+.
T Consensus 156 ~~e~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~~~~ 235 (497)
T KOG2157|consen 156 LLERSRLPKAQLEDYILLDYVETTFVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFDSFI 235 (497)
T ss_pred hccccccchhhcccceeecccchhhhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhhhhhcccccc
Confidence 8775 379999999999999999999887 6788999999999999999999988886432
Q ss_pred ----cCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCC
Q psy9480 167 ----YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSS 242 (395)
Q Consensus 167 ----~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~ 242 (395)
.+.++||+||++|+||+|+|||||.||+|++.+|+.+|.|++|++|||+++|.. ..|+++.++||||+++||+.
T Consensus 236 s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~--~~nl~n~~~HLtN~siqK~~ 313 (497)
T KOG2157|consen 236 SENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP--LVNLQNMSVHLTNVSIQKLY 313 (497)
T ss_pred cccccccceeeeeccCccccCCceeeeeEEEEeecccchhheeeccceEEEEeccCcc--hhhhcccchhhhccccccCC
Confidence 355999999999999999999999999999999999999999999999999994 48999999999999999999
Q ss_pred CCCCCCCC---CCCccChHHHHHHHHHcCCCh---hHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEE
Q psy9480 243 ENYNKSPE---RGSKRDFTALNSWLLSQGLNS---TKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEIL 316 (395)
Q Consensus 243 ~~~~~~~~---~g~~~~l~~l~~~l~~~g~~~---~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~ 316 (395)
+++....+ .|++|+++.++.|++..|... ...+..|...|...+.++++.+ ....+|||+|
T Consensus 314 ~~~~~~~s~~~~~~~w~~~~~~~yl~~~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~-------------~~~~n~FEly 380 (497)
T KOG2157|consen 314 PNYCHLSSLLSESCKWTLNSLLLYLRNIGSPCLELKLQIKPIITGIVLSVFASATTV-------------PSLANCFELY 380 (497)
T ss_pred CCcccccccccCCCcccHHHHHHHHHhhcCCcccccccchhhhhhhhhhhhhhcccc-------------ccccchhhhh
Confidence 99887642 689999999999999865543 3445555555555555554433 2345799999
Q ss_pred eeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhccccccccc
Q psy9480 317 GFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKS 369 (395)
Q Consensus 317 G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~~~~~r~ 369 (395)
|+|||+|++++|||||||+.|+++.++..|..++..++.|++.++.+...+++
T Consensus 381 G~DfliD~~lkpwLiEiNssP~~~~t~~~d~~l~~~l~~d~l~~v~~~~~~~~ 433 (497)
T KOG2157|consen 381 GFDFLIDEALKPWLIEINASPDLTQTTKNDARLKSKLIDDVLKVVVDPRLDPN 433 (497)
T ss_pred CcceeecCCCCeEEEEeecCCcccccchhhhHHHHHHHHHhhccccCcccccc
Confidence 99999999999999999999999999999999999999999999988776655
No 4
>KOG2158|consensus
Probab=100.00 E-value=7.3e-54 Score=415.34 Aligned_cols=275 Identities=43% Similarity=0.742 Sum_probs=253.9
Q ss_pred cceecccCCCCcccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCC
Q psy9480 80 YHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNT 159 (395)
Q Consensus 80 ~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~ 159 (395)
+|++|||||+.+++ |+.|. |.+|++.+|+.+.|+|.||.||.++..|.++.+.. ...||+||..|++|.||+++++
T Consensus 172 fqrvn~fPgm~e~~-kd~Ls--l~~mqkifpeey~fyp~sw~lPa~l~df~a~~~~~-KrtfivkpDsgaqg~giylisD 247 (565)
T KOG2158|consen 172 FQRENNFPGMREKE-KDILD--LLEMQKIFPEEYMFYPTSWRLPAPLCDFPASTEIM-KRTFIVKPDSGAQGSGIYLISD 247 (565)
T ss_pred hhhhhcCchHHHHH-HHHHh--HHHHHhcChHHhcCCCccccCchHHHHHHHHHHHh-cccEEECCCCCCCCcceeeech
Confidence 89999999999999 99999 99999999999999999999999999999988764 3499999999999999999988
Q ss_pred hHHHhcccCcceeeecccccccc-CCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceeccccc
Q psy9480 160 LEEARGIYTESVSQLYMSNLLLM-DGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSV 238 (395)
Q Consensus 160 ~~~i~~~~~~~IvQ~YI~~PlLi-~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i 238 (395)
..++ +..+..++|+||..|||+ |+.|||+|+|++++|++||+||++++|++|||+++|..|+.+|.++.++|||||++
T Consensus 248 ir~~-g~~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~eGlaRFcTeky~ePts~n~~~lymhlTnYsl 326 (565)
T KOG2158|consen 248 IREK-GEYQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASEGLARFCTEKYIEPTSANRSHLYMHLTNYSL 326 (565)
T ss_pred hhhh-hHHHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEeccchhhhhhccccCCCcccHHHHHHHHHHhhh
Confidence 7777 566679999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC---CCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEE
Q psy9480 239 NKSSENYNKSP---ERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEI 315 (395)
Q Consensus 239 ~k~~~~~~~~~---~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel 315 (395)
|+.+.+|...+ ..|+++.|+....+++..|++.+.+|.+|+.++.++.+|..|.+...|...++.| .....||++
T Consensus 327 nk~nsny~hsd~sq~~gSkR~Lsti~~ql~s~gvdtk~vwsDik~v~iktvlA~~peLk~~y~~~fp~h--~tgpacfqi 404 (565)
T KOG2158|consen 327 NKPNSNYAHSDNSQVSGSKRQLSTINEQLDSLGVDTKFVWSDIKIVFIKTVLAESPELKEDYIDNFPYH--KTGPACFQI 404 (565)
T ss_pred cCCCccccccCcccccchhHHHHHHHHHHHhcCchHHHHHhhhhhhhcchhhhcCHHHHHHHHHhCCCC--CcCCceEEE
Confidence 99999998655 2799999999999999999999999999999999999999999999999999987 667789999
Q ss_pred EeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhccc
Q psy9480 316 LGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNL 363 (395)
Q Consensus 316 ~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~ 363 (395)
+|||++++.++.|.|+|||..|++.....+|.+. .+|.++|+++..
T Consensus 405 ~gfDi~~~~k~~pillevnrapslr~~~~vd~e~--~ll~~~~n~vs~ 450 (565)
T KOG2158|consen 405 IGFDIVKQRKVLPILLEVNRAPSLRIWKVVDVEE--VLLYRIFNRVSN 450 (565)
T ss_pred eccchhhccccchHHHHhcccccccccccCCCch--hHHHhhhhhhHH
Confidence 9999999999999999999999999877666554 566666665543
No 5
>KOG2155|consensus
Probab=100.00 E-value=1.2e-37 Score=300.59 Aligned_cols=303 Identities=22% Similarity=0.251 Sum_probs=243.8
Q ss_pred CCCcHHHHHHHHHhCCCEEecCCCCCeEEEEcccCCCh-hhhhcCCccceecccCCCCcccchHHHHHHHHHHHhhCCCC
Q psy9480 34 KRCMYKIVEDVATLMGMGIVRDDEEPWDVYWSDFSVST-VMSKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPED 112 (395)
Q Consensus 34 ~~~~~~~v~~~~~~~g~~~~~~~~~~~~i~W~~~~~~~-~~~~~l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~ 112 (395)
-+++...|.+.|....|..+++.. ++||+|...+++. ..+..-.|.+.+|+||.+.+|+-|+.|+.+.++ .+..
T Consensus 308 VYtD~~Qv~e~Lt~p~f~~t~~~k-dADilw~~~hf~Dykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r----~~g~ 382 (631)
T KOG2155|consen 308 VYTDDTQVTEHLTNPKFEYTDDIK-DADILWMIKHFHDYKKLSEENPCGMINQFPFESCLTVKDLLAACAMR----DPGK 382 (631)
T ss_pred EEcCcHHHHHhccCCceEeccCcc-ccceeeehhhHHHHHHHhccCCcceeccCchHHHHHHHHHHHHHHhh----cCCC
Confidence 345667899999999999999987 9999999865443 224455789999999999999999999988864 3445
Q ss_pred CCcccCeeeccchHHHHHHHHHc----CCCcEEEEcCCCCCCCCceEeeCChHHHhcc--cCcceeeeccccccccCCce
Q psy9480 113 YDFYPRSWSLPYQQEDFLSYVRE----HPHQVFISKPSRGAEGKGIKIFNTLEEARGI--YTESVSQLYMSNLLLMDGFK 186 (395)
Q Consensus 113 ~~~~P~T~~Lp~~~~~f~~~~~~----~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~--~~~~IvQ~YI~~PlLi~grK 186 (395)
.+|+|.||.|..++.+|++++.. ..+++||+||++.+||....+..++.+|.+. ..+.|||+||++|+|+.|-|
T Consensus 383 ~~Wlq~TyNL~TqLpqFv~~fq~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~EtgPKiv~kYIe~P~LFr~gK 462 (631)
T KOG2155|consen 383 NDWLQLTYNLNTQLPQFVARFQNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIETGPKIVCKYIERPLLFRNGK 462 (631)
T ss_pred CcccccccccccchHHHHHHHHHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHhcCchHHHHhcCCcceeecCc
Confidence 57999999999999999998865 4678999999999999999999999998653 56799999999999997779
Q ss_pred eeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceec--ccccccCCCCCCCCCCCCCccChHHHHHHH
Q psy9480 187 FDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLT--NYSVNKSSENYNKSPERGSKRDFTALNSWL 264 (395)
Q Consensus 187 FDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLT--N~~i~k~~~~~~~~~~~g~~~~l~~l~~~l 264 (395)
||||+.|++.|+.||++|+|+..++||+..+|.. +|+.++..|+| ||-.- -.....++|...+
T Consensus 463 FDlRYiVllrsi~Pl~~yvy~~FWiRfsnn~fsL---~~f~dyEtHFTVmNY~~k------------l~q~~ceeFi~~~ 527 (631)
T KOG2155|consen 463 FDLRYIVLLRSIAPLTAYVYNRFWIRFSNNEFSL---SNFEDYETHFTVMNYLEK------------LLQMKCEEFIGEF 527 (631)
T ss_pred cceEEEEEEccccchhhhheeheeeeecCCccch---hhhhhhhhhhhhhhHHHH------------HhhccHHHHHHHH
Confidence 9999999999999999999999999999999998 89999999999 76411 1122345566656
Q ss_pred HHc--CCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEe--cCC--CceEEEEeeCCCC
Q psy9480 265 LSQ--GLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILI--DST--MKPFLLEVNRSPS 338 (395)
Q Consensus 265 ~~~--g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~ll--D~~--~kpwLLEVN~~P~ 338 (395)
++. -..|+.+..+|..++++.+.++...-. .+. -....+...+||+|+|+ |.+ .+|-|||||.+|+
T Consensus 528 ek~yp~~pw~dvq~~i~~aire~~eaaak~~~----e~g----~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPD 599 (631)
T KOG2155|consen 528 EKGYPCFPWEDVQCSIVPAIREPFEAAAKLNP----ECG----AALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPD 599 (631)
T ss_pred hhcCCCCCcchhhhHHHHHHHHHHhhhhccCC----ccc----ccCCchhhhhhhheeeeccCCCccccceeEEEecCcc
Confidence 544 456788888899999888877643110 000 01134577899999999 666 8999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcccccccc
Q psy9480 339 FNIAGIVDERVKRTLIYDTFKILNLNQNRK 368 (395)
Q Consensus 339 l~~~~~~d~~vk~~li~d~~~l~~~~~~~r 368 (395)
+...|.++. ...+++|..+.++..+.
T Consensus 600 c~RACrYhp----dFfnnVFstLFLDep~~ 625 (631)
T KOG2155|consen 600 CKRACRYHP----DFFNNVFSTLFLDEPSD 625 (631)
T ss_pred hHHHhhcCh----hHHHhHHHHhhccCCCC
Confidence 999998855 56667777776665433
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.94 E-value=3e-25 Score=211.51 Aligned_cols=213 Identities=22% Similarity=0.215 Sum_probs=163.3
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHh-------
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEAR------- 164 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~------- 164 (395)
+.+|+.+++.|. .+|...+|+|+|..+. ..+.+...+.+ .+..++||..|++|+||..+...+...
T Consensus 16 ~~~Kw~v~~~L~----~~~~l~~~LP~T~~~~-~~~~l~~~L~~--y~~vylKP~~Gs~G~gI~ri~~~~~~~~~~~~~~ 88 (262)
T PF14398_consen 16 FFDKWEVYKALS----RDPELRPYLPETELLT-SFEDLREMLNK--YKSVYLKPDNGSKGKGIIRIEKKGGGYRIQYRNK 88 (262)
T ss_pred CCCHHHHHHHHH----cCCcchhhCCCceEcC-CHHHHHHHHHH--CCEEEEEeCCCCCCccEEEEEEeCCEEEEEEccC
Confidence 569999998886 3556678999999886 34566666665 578889999999999999886543210
Q ss_pred ---------------------cccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCC
Q psy9480 165 ---------------------GIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPET 223 (395)
Q Consensus 165 ---------------------~~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~ 223 (395)
...+.||||++|+ -..++||+||+|+.|+.+..+. |...+..+|+|......
T Consensus 89 ~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~RvlvqK~~~G~---W~vtg~~~Rva~~~~iv--- 161 (262)
T PF14398_consen 89 KKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLVQKNGSGK---WQVTGIVARVAKPGSIV--- 161 (262)
T ss_pred CceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEEEECCCCC---EEEEEEEEEEcCCCCce---
Confidence 0135799999996 3448999999999999887655 99999999999987665
Q ss_pred CCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCc
Q psy9480 224 GNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPE 303 (395)
Q Consensus 224 ~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~ 303 (395)
||.+. +|...+++++.... ...+.+.++|++++..+..++...+
T Consensus 162 ----------TN~~~------------GG~~~~~~~~l~~~----~~~~~~~~~l~~~a~~ia~~le~~~---------- 205 (262)
T PF14398_consen 162 ----------TNLSQ------------GGTALPFEEVLRQS----EEAEKIREELEDLALEIAQALEKHF---------- 205 (262)
T ss_pred ----------eccCC------------CceecCHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence 66542 68888888877755 2246777777777776665554321
Q ss_pred ccCCCCCCc-eEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc-hHHHHHHHHHHHhhhc
Q psy9480 304 HYHHNVSAS-FEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV-DERVKRTLIYDTFKIL 361 (395)
Q Consensus 304 ~~~~~~~~~-Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~-d~~vk~~li~d~~~l~ 361 (395)
+. |.++|+||.||.+|++||||||+.|+......+ +.++..+++...++.+
T Consensus 206 -------~~~~gElGiDl~iD~~g~iWliEvN~kP~~~~~~~~~~~~~~~~~~~~pl~Ya 258 (262)
T PF14398_consen 206 -------GGHLGELGIDLGIDKNGKIWLIEVNSKPGKFDFRDIGDKELIRQSYRRPLEYA 258 (262)
T ss_pred -------CCceeEEEEEEEEcCCCCEEEEEEeCCCCcchhhcccchHHHHHHHHHHHHHH
Confidence 23 888899999999999999999999999887765 5667777777666654
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.25 E-value=3.4e-11 Score=109.54 Aligned_cols=147 Identities=25% Similarity=0.458 Sum_probs=66.7
Q ss_pred ccCeeecc--chHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCce
Q psy9480 116 YPRSWSLP--YQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFK 186 (395)
Q Consensus 116 ~P~T~~Lp--~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grK 186 (395)
+|+|+... .+..+|.+.+. ....|+||..|+.|+|+.++++.+++.. ...+.++|+||+.+ +|
T Consensus 18 vP~t~~~~~~~~~~~~~~~~~---~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~~~~~~~~~Q~fI~~~---~g-- 89 (190)
T PF08443_consen 18 VPETRVTNSPEEAKEFIEELG---GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFKRLENPILVQEFIPKD---GG-- 89 (190)
T ss_dssp ---EEEESSHHHHHHHHHHH-----SSEEEE-SB-------EEEESHCHHHHHHH-----TTT-EEEE----S---S---
T ss_pred CCCEEEECCHHHHHHHHHHhc---CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHHhccCcceEeccccCC---CC--
Confidence 69998874 34555555553 3568999999999999999999877632 23568999999742 11
Q ss_pred eeeEEEEEEecccCceEEEEcceEEEeccC-CCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHH
Q psy9480 187 FDLRVYVLITCIDPLRIFVYNNGLVRLATC-QYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLL 265 (395)
Q Consensus 187 FDlRvyvlvts~~pl~vy~~~~g~vR~a~~-~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~ 265 (395)
-|+|++|+ . + ++. .++.|.++. .|. ||.+. +|..
T Consensus 90 ~d~Rv~Vi--g-~--~vv---~a~~r~~~~~d~r--------------~n~~~------------g~~~----------- 124 (190)
T PF08443_consen 90 RDLRVYVI--G-G--KVV---GAYRRSSPEGDFR--------------TNLSR------------GGKV----------- 124 (190)
T ss_dssp --EEEEEE--T-T--EEE---EEEE-------------------------------------------------------
T ss_pred cEEEEEEE--C-C--EEE---EEEEEecCcccch--------------hhhcc------------CceE-----------
Confidence 69999998 1 1 111 112333222 121 34321 1111
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCC
Q psy9480 266 SQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIA 342 (395)
Q Consensus 266 ~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~ 342 (395)
..-.+-+++++++.++..++ ...+.|+|+ ++.++++|++|||.+|++...
T Consensus 125 ----~~~~l~~e~~~~a~~~~~~l----------------------gl~~~giDi-~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 125 ----EPYDLPEEIKELALKAARAL----------------------GLDFAGIDI-LDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp ----EE----HHHHHHHHHHHHHT----------------------T-SEEEEEE-EEETTEEEEEEEETT---TTH
T ss_pred ----EEecCCHHHHHHHHHHHHHh----------------------CCCEEEEEE-EecCCCeEEEEecCCchHhHH
Confidence 11223445666655554443 346789995 566678999999999999864
No 8
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.20 E-value=3.5e-10 Score=110.10 Aligned_cols=193 Identities=18% Similarity=0.300 Sum_probs=108.7
Q ss_pred ecccCCCCcccchHHHHHHHHHHHhhCCCCCCcccCeeeccc---hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCC
Q psy9480 83 INHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPY---QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNT 159 (395)
Q Consensus 83 vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~---~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~ 159 (395)
+|-=.....+..|......+++.. =-+|+|+.+.. ..+++.+.+.. .+..|+||..|++|+||.++.+
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~ag-------lpvP~T~~~~s~~~~~~~l~~~~~~--~~~VVVKPl~Gs~GrGI~~i~~ 96 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAAG-------ITVPELYGVIHNQAEVKTIHNIVKD--HPDFVIKPAQGSGGKGILVITS 96 (317)
T ss_pred cCCchhccccccHHHHHHHHHHcC-------CCCCCEEEecCchhhHHHHHHHHcc--CCCEEEEECCCCCccCeEEEEe
Confidence 454444555677777765554322 24699887742 33456565544 4468999999999999999966
Q ss_pred hHHH---------------hc-----------cc--Ccceeeecccccc--c--cCCce-eeeEEEEEEecccCceEEEE
Q psy9480 160 LEEA---------------RG-----------IY--TESVSQLYMSNLL--L--MDGFK-FDLRVYVLITCIDPLRIFVY 206 (395)
Q Consensus 160 ~~~i---------------~~-----------~~--~~~IvQ~YI~~Pl--L--i~grK-FDlRvyvlvts~~pl~vy~~ 206 (395)
.++. .. .. ...++|+|+..|- + +...+ -|+|++++... +.
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~--~v----- 169 (317)
T TIGR02291 97 RKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGY--PV----- 169 (317)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCE--EE-----
Confidence 4321 00 01 1245557763332 1 22223 39999998322 21
Q ss_pred cceEEEeccC--CCCCCCCCCCCCccceecccccccCCC-----------------CCCCCCCCCCccChHHHHHHHHHc
Q psy9480 207 NNGLVRLATC--QYTSPETGNLTNQYMHLTNYSVNKSSE-----------------NYNKSPERGSKRDFTALNSWLLSQ 267 (395)
Q Consensus 207 ~~g~vR~a~~--~y~~~~~~nl~~~~~HLTN~~i~k~~~-----------------~~~~~~~~g~~~~l~~l~~~l~~~ 267 (395)
..+.|.+.. .+. ||.+...... .|..+++.|.. + .
T Consensus 170 -aa~~R~~~~~~~~~--------------tN~~~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~--~---------~ 223 (317)
T TIGR02291 170 -MAMMRLPTRASDGK--------------ANLHQGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKD--L---------S 223 (317)
T ss_pred -EEEEEccCccCCcc--------------cccccCCceeeeecCCCccccccccCCccccCCCcccc--c---------c
Confidence 233454432 111 2332211111 11111111100 0 0
Q ss_pred CCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 268 GLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 268 g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
|.. ...|+++.+++.++..++ +| .++|+||++|.++.||+||||+.|++.
T Consensus 224 g~~-ip~~~el~~la~~A~~~~---------------------g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 224 GLQ-VPHWERLLELAASCWELT---------------------GL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred cCC-ChhHHHHHHHHHHHHHhc---------------------CC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 111 245777777766655432 45 889999999988999999999999998
No 9
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=99.19 E-value=1e-09 Score=107.42 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCEEecC--CC-----CCeEEEEcccCCCh-----hhhhcCCc-cceecccCCCCcccchHHHHHHHHHHH
Q psy9480 40 IVEDVATLMGMGIVRD--DE-----EPWDVYWSDFSVST-----VMSKSMEV-YHRINHFPGMANLESKAFLAYHLNRMR 106 (395)
Q Consensus 40 ~v~~~~~~~g~~~~~~--~~-----~~~~i~W~~~~~~~-----~~~~~l~~-~q~vNh~p~~~~l~~K~~L~~~l~~~~ 106 (395)
.+.+.+++.|...+.= +. ..+|++-....-.. ..+..-.+ --.+|.......+..|..+...|.+..
T Consensus 40 ~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vidp~~ai~~~~dR~~~~~~L~~~~ 119 (328)
T PLN02941 40 SLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLK 119 (328)
T ss_pred HHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEECCHHHHHHHHHHHHHHHHHHHcC
Confidence 4455778888765532 21 13566655431111 00111122 235788888888889988888887644
Q ss_pred hhCCCCCCcccCeeeccchHHHHHHHHHc-CCCcEEEEcCCCC---CCCCceEeeCChHHHhcccCcceeeecccccccc
Q psy9480 107 NHFPEDYDFYPRSWSLPYQQEDFLSYVRE-HPHQVFISKPSRG---AEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLM 182 (395)
Q Consensus 107 ~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~-~~~~~wIvKP~~g---s~G~GI~li~~~~~i~~~~~~~IvQ~YI~~PlLi 182 (395)
.......--.|+|+.+.+...++...... +.+-..|+||..| +.|+|+.++.+.+.+.....++++|+||.+|
T Consensus 120 ~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l~~p~~lQEfVnh~--- 196 (328)
T PLN02941 120 LSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQEFVNHG--- 196 (328)
T ss_pred CcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhcCCcEEEEEecCCC---
Confidence 21111223589999987543333222211 2344699999999 9999999999999886666689999999876
Q ss_pred CCceeeeEEEEE
Q psy9480 183 DGFKFDLRVYVL 194 (395)
Q Consensus 183 ~grKFDlRvyvl 194 (395)
-.|+|+||+
T Consensus 197 ---g~d~RVfVv 205 (328)
T PLN02941 197 ---GVLFKVYVV 205 (328)
T ss_pred ---CEEEEEEEE
Confidence 579999998
No 10
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.13 E-value=1.6e-09 Score=104.10 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=49.6
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-----------ccCcceeeeccccccccCC
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-----------IYTESVSQLYMSNLLLMDG 184 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-----------~~~~~IvQ~YI~~PlLi~g 184 (395)
+|+|+.+. +..++......- +-.+|+||..|+.|+|+.++.+.+++.. ....+++|+||+.|
T Consensus 102 ~P~t~~~~-~~~~~~~~~~~~-~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~----- 174 (280)
T TIGR02144 102 TPRTYLAF-DREAALKLAEAL-GYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKP----- 174 (280)
T ss_pred CCCeEeeC-CHHHHHHHHHHc-CCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCC-----
Confidence 58888764 233333333221 3358999999999999999999876532 11359999999733
Q ss_pred ceeeeEEEEE
Q psy9480 185 FKFDLRVYVL 194 (395)
Q Consensus 185 rKFDlRvyvl 194 (395)
..|+|++|+
T Consensus 175 -~~d~~v~vi 183 (280)
T TIGR02144 175 -GRDIRVFVI 183 (280)
T ss_pred -CCceEEEEE
Confidence 468999886
No 11
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.13 E-value=8.5e-10 Score=107.39 Aligned_cols=149 Identities=22% Similarity=0.291 Sum_probs=89.9
Q ss_pred cccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHh-------cccCcceeeeccccccccCCcee
Q psy9480 115 FYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEAR-------GIYTESVSQLYMSNLLLMDGFKF 187 (395)
Q Consensus 115 ~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~-------~~~~~~IvQ~YI~~PlLi~grKF 187 (395)
-+|+|..+. +.++....+.+...-.+|+||..|+.|+|+.++++.+++. .....++||+||+.. .-.
T Consensus 113 p~P~t~~~~-~~~~~~~~~~~~~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~-----~g~ 186 (300)
T PRK10446 113 DLPVTGIAH-SPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEA-----QGC 186 (300)
T ss_pred CCCCEEEeC-CHHHHHHHHHHhCCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccC-----CCc
Confidence 468887664 2233333333211346999999999999999999876652 123569999999631 247
Q ss_pred eeEEEEEEecccCceEEEEcceEEEeccC-CCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHH
Q psy9480 188 DLRVYVLITCIDPLRIFVYNNGLVRLATC-QYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLS 266 (395)
Q Consensus 188 DlRvyvlvts~~pl~vy~~~~g~vR~a~~-~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~ 266 (395)
|+|+.|+ . + ++. ..+-|.+.. .| .+|++. ++....
T Consensus 187 d~rv~vi--g-~--~~~---~~~~r~~~~~~~--------------~~n~~~------------g~~~~~---------- 222 (300)
T PRK10446 187 DIRCLVV--G-D--EVV---AAIERRAKEGDF--------------RSNLHR------------GGAASV---------- 222 (300)
T ss_pred eEEEEEE--C-C--EEE---EEEEEecCCCch--------------hheecc------------CCeecc----------
Confidence 9999987 2 1 111 122333321 12 144431 111100
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCC
Q psy9480 267 QGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNI 341 (395)
Q Consensus 267 ~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~ 341 (395)
..+-+++.+++.++..++ +|. +.|+||++|+++ +|++|||..|++..
T Consensus 223 -----~~l~~~~~~~a~~a~~al---------------------g~~-~~gvD~~~~~~g-~~vlEvN~~pg~~~ 269 (300)
T PRK10446 223 -----ASITPQEREIAIKAARTM---------------------ALD-VAGVDILRANRG-PLVMEVNASPGLEG 269 (300)
T ss_pred -----CCCCHHHHHHHHHHHHHh---------------------CCC-EEEEEEEEcCCC-cEEEEEECCCChhh
Confidence 112334555555554443 354 789999999888 99999999999874
No 12
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.13 E-value=9.8e-10 Score=104.93 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=59.5
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc------
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG------ 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~------ 165 (395)
...|..+.+.+.+.. --+|+|+.+. +.+++.+.+.+. +-.+|+||..|+.|+|+.++++.+++..
T Consensus 86 ~~dK~~~~~~l~~~g-------i~~P~t~~~~-~~~~~~~~~~~~-~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~ 156 (277)
T TIGR00768 86 AGDKFLTSQLLAKAG-------LPQPRTGLAG-SPEEALKLIEEI-GFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFE 156 (277)
T ss_pred HhhHHHHHHHHHHCC-------CCCCCEEEeC-CHHHHHHHHHhc-CCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHH
Confidence 356666555554321 1368998875 344444444332 3479999999999999999999877631
Q ss_pred -c---cCcceeeeccccccccCCce-eeeEEEEE
Q psy9480 166 -I---YTESVSQLYMSNLLLMDGFK-FDLRVYVL 194 (395)
Q Consensus 166 -~---~~~~IvQ~YI~~PlLi~grK-FDlRvyvl 194 (395)
. ...+++|+||+ |.. +|+|++++
T Consensus 157 ~~~~~~~~~lvQe~I~------~~~~~~~rv~v~ 184 (277)
T TIGR00768 157 QLNGPQNLFYVQEYIK------KPGGRDIRVFVV 184 (277)
T ss_pred HhcccCCcEEEEeeec------CCCCceEEEEEE
Confidence 1 13699999997 333 79999876
No 13
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.3e-09 Score=105.01 Aligned_cols=178 Identities=20% Similarity=0.260 Sum_probs=108.6
Q ss_pred eecccCCCCcccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH
Q psy9480 82 RINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE 161 (395)
Q Consensus 82 ~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~ 161 (395)
.+|.-.+...-..|-.....+.+.. -.+|+|.+.-+. .+......+..+...|+||..|+.|+||+++++.+
T Consensus 107 viN~p~~i~~~~nK~~~~~~l~~~~-------ipvP~T~i~~~~-~~~~~~~~~~~g~pvVlKp~~Gs~G~gV~~v~~~d 178 (318)
T COG0189 107 VINDPQSIRRCRNKLYTTQLLAKAG-------IPVPPTLITRDP-DEAAEFVAEHLGFPVVLKPLDGSGGRGVFLVEDAD 178 (318)
T ss_pred EECCHHHHHhhhhHHHHHHHHHhcC-------CCCCCEEEEcCH-HHHHHHHHHhcCCCEEEeeCCCCCccceEEecCCC
Confidence 4555444444455555554443321 367999988643 33334444444578999999999999999999988
Q ss_pred -HHhc------cc--CcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccce
Q psy9480 162 -EARG------IY--TESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMH 232 (395)
Q Consensus 162 -~i~~------~~--~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~H 232 (395)
++.. .. +.+++|+||..+ +=|.|.++++.. -|..+| ++.|.+...--.
T Consensus 179 ~~l~~~~e~~~~~~~~~~ivQeyi~~~------~~~~rrivv~~~-~~~~~y----~~~R~~~~~~~R------------ 235 (318)
T COG0189 179 PELLSLLETLTQEGRKLIIVQEYIPKA------KRDDRRVLVGGG-EVVAIY----ALARIPASGDFR------------ 235 (318)
T ss_pred hhHHHHHHHHhccccceEehhhhcCcc------cCCcEEEEEeCC-EEeEEe----eeccccCCCCce------------
Confidence 6531 11 359999999865 345666665332 233333 556655332211
Q ss_pred ecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCc
Q psy9480 233 LTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSAS 312 (395)
Q Consensus 233 LTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 312 (395)
||.+.. |.. ....+-+++++++.++..++ .
T Consensus 236 -~N~a~G------------g~~---------------e~~~l~~e~~elA~kaa~~l----------------------G 265 (318)
T COG0189 236 -SNLARG------------GRA---------------EPCELTEEEEELAVKAAPAL----------------------G 265 (318)
T ss_pred -eecccc------------ccc---------------cccCCCHHHHHHHHHHHHHh----------------------C
Confidence 455432 221 11223345555665554333 3
Q ss_pred eEEEeeeEEecCCCceEEEEeeCCCCCCC
Q psy9480 313 FEILGFDILIDSTMKPFLLEVNRSPSFNI 341 (395)
Q Consensus 313 Fel~G~D~llD~~~kpwLLEVN~~P~l~~ 341 (395)
..++|+||+.+ +...+++|||.+|.+..
T Consensus 266 l~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 266 LGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred CeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 47789999999 77799999999997775
No 14
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.05 E-value=5.4e-09 Score=96.17 Aligned_cols=139 Identities=20% Similarity=0.329 Sum_probs=85.5
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceE-----EE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRI-----FV 205 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~v-----y~ 205 (395)
+-.+|+||..++.+.||.++++.+++.. ..++.+|++||+ |+.|-+-++= .+...+ ..
T Consensus 33 ~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI~------G~E~tv~vl~----~~~~~~~~~~ei~ 102 (203)
T PF07478_consen 33 GFPLFVKPASEGSSIGISKVHNEEELEEAIEKAFKYDDDVLVEEFIS------GREFTVGVLG----NGEPRVLPPVEIV 102 (203)
T ss_dssp SSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHTTTHSEEEEEE--S------SEEEEEEEEE----SSSTEEEEEEEEE
T ss_pred CCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHhhhcceEEEEeeec------ccceEEEEEe----cCCcccCceEEEE
Confidence 4578999999999999999999888732 346799999996 7766655432 112222 22
Q ss_pred EcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy9480 206 YNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKT 285 (395)
Q Consensus 206 ~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~ 285 (395)
+..++..+.. +|.. .+ .. +.+.+ . ..-.+.+.++|+++..++
T Consensus 103 ~~~~~~d~~~-Ky~~---~~--~~----~~~~~-----------------p-----------a~l~~~~~~~i~~~a~~a 144 (203)
T PF07478_consen 103 FPSEFYDYEA-KYQP---AD--SE----TEYII-----------------P-----------ADLSEELQEKIKEIAKKA 144 (203)
T ss_dssp ESSSEEEHHH-HHSG---CC--SC----EEEES-----------------S------------SS-HHHHHHHHHHHHHH
T ss_pred cCCCceehhh-eecc---CC--Cc----eEEEe-----------------c-----------CCCCHHHHHHHHHHHHHH
Confidence 2222222211 1110 00 00 00000 0 011255677888888777
Q ss_pred HHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 286 IISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 286 ~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+.++ +|-..-.+||.+|++++||+||||+.|+|+..+.+
T Consensus 145 ~~~l---------------------g~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~ 183 (203)
T PF07478_consen 145 FKAL---------------------GCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLF 183 (203)
T ss_dssp HHHT---------------------TTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHH
T ss_pred HHHH---------------------cCCCceeEEEEeccCCceEEEeccCcccccCCCHH
Confidence 7654 56677899999999999999999999999987755
No 15
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.04 E-value=1.1e-08 Score=101.25 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=86.5
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGL 210 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~ 210 (395)
.-.||+||..++.|.||.++++.+++.. ....++||+||+ |+ ++++-|+.. ++ .+. .-+-
T Consensus 162 ~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~------G~--E~~v~vl~~--~~-~~~--~~~e 228 (333)
T PRK01966 162 GLPVFVKPANLGSSVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK------GR--EIECAVLGN--DP-KAS--VPGE 228 (333)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC------CE--EEEEEEECC--CC-eEc--ccEE
Confidence 4579999999999999999999888732 245799999997 64 566666632 11 111 1111
Q ss_pred EEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHc
Q psy9480 211 VRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVY 290 (395)
Q Consensus 211 vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~ 290 (395)
+.....-|+.. .. |.. ++..... .... .+.+.++|++++.+++.++
T Consensus 229 i~~~~~~~d~~------------~k---------y~~---~~~~~~~--------Pa~l-~~~~~~~i~~~a~~~~~aL- 274 (333)
T PRK01966 229 IVKPDDFYDYE------------AK---------YLD---GSAELII--------PADL-SEELTEKIRELAIKAFKAL- 274 (333)
T ss_pred EecCCceEcHH------------Hc---------cCC---CCceEEe--------CCCC-CHHHHHHHHHHHHHHHHHh-
Confidence 11111111110 00 100 0000000 0001 2455667777777776664
Q ss_pred hHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 291 PILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+|-...++||++|+++++|+||||+.|++...+.+
T Consensus 275 --------------------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 275 --------------------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISMY 309 (333)
T ss_pred --------------------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 46678899999999999999999999999877643
No 16
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.03 E-value=9.2e-09 Score=91.83 Aligned_cols=88 Identities=18% Similarity=0.294 Sum_probs=56.2
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI----- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~----- 166 (395)
+..|..+.+.+++.. .+ +|+++.+. +.+++.+..... ...||+||..|+.|+|+.++++.+++...
T Consensus 2 ~~dK~~~~~~~~~~g------v~-~P~~~~~~-~~~~~~~~~~~~-~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~ 72 (184)
T PF13535_consen 2 CNDKYRMRELLKKAG------VP-VPKTRIVD-SEEELRAFAEDL-GFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIR 72 (184)
T ss_dssp TCCHHHHHHHHHHHT------S-----EEEEC-SHHHHHHHHHHS-SSSEEEEESS-STTTT-EEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcC------cC-CCCEEEEC-CHHHHHHHHHHc-CCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHH
Confidence 356777777776432 12 78888775 345555555442 36799999999999999999999887421
Q ss_pred ------cCcceeeeccccccccCCceeeeEEEEE
Q psy9480 167 ------YTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 167 ------~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
...+|||+||+ |.-+.+++++.
T Consensus 73 ~~~~~~~~~~ivqe~i~------g~e~~~~~~~~ 100 (184)
T PF13535_consen 73 EDSPLGNGPVIVQEYIP------GDEYSVDGVVD 100 (184)
T ss_dssp HHHS-HSSSEEEEE---------SEEEEEEEEEE
T ss_pred HhcccCCccEEEEEeee------eeeEEEEEEEE
Confidence 24699999997 77788887766
No 17
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=99.01 E-value=1.9e-08 Score=97.21 Aligned_cols=218 Identities=20% Similarity=0.287 Sum_probs=126.0
Q ss_pred cccCCCCcccchHHHHHHHHHHHhhCCCCCCcccCeeecc---chHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCCh
Q psy9480 84 NHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLP---YQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTL 160 (395)
Q Consensus 84 Nh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp---~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~ 160 (395)
|.-.....+..|-.+.+.+..+--..|...-..++.|... .+.++|.+.++......+++||..|++|+||.++...
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~G~Gi~~i~~~ 95 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSGGKGILVIDRR 95 (285)
T ss_pred CchhhccccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCCccCEEEEEee
Confidence 5555556678888888877665333343211244444332 3567777777664447899999999999999998765
Q ss_pred HH---------H---hcccC--cceeeecccccccc---C-CceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCC
Q psy9480 161 EE---------A---RGIYT--ESVSQLYMSNLLLM---D-GFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPE 222 (395)
Q Consensus 161 ~~---------i---~~~~~--~~IvQ~YI~~PlLi---~-grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~ 222 (395)
+. + ..... .||||++|..=-.+ . .---+||+..++..-.| + .-..+.|++......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~---~-~~~a~lRlg~~~~~~-- 169 (285)
T PF14397_consen 96 DGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEV---E-VLMAMLRLGRGGSGV-- 169 (285)
T ss_pred cCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCee---E-EEEEEEEeCCCCCcc--
Confidence 41 1 01122 79999999742222 2 34459999988765222 2 224567887433332
Q ss_pred CCCCC--------Cccceecccc-cccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHH
Q psy9480 223 TGNLT--------NQYMHLTNYS-VNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPIL 293 (395)
Q Consensus 223 ~~nl~--------~~~~HLTN~~-i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l 293 (395)
+|++ |....++.++ .......|..++++|.. + .|... --|+++.+++.++....
T Consensus 170 -DN~~~Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~--~---------~g~~I-P~w~~~~~l~~~~~~~~---- 232 (285)
T PF14397_consen 170 -DNFHQGGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAP--F---------SGFQI-PNWDEILELAKEAHRKF---- 232 (285)
T ss_pred -cccCCCCEEEEEecCCCccccccccCCCCEeeeCCCCCCc--c---------CCccC-CCHHHHHHHHHHHHHHC----
Confidence 3332 1111133332 11112223222222211 0 01111 23666666655433221
Q ss_pred HHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCC--CCCCCC
Q psy9480 294 KEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRS--PSFNIA 342 (395)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~--P~l~~~ 342 (395)
..+..+|.|+.||++| |.|||.|+. |++...
T Consensus 233 -----------------p~~~~iGWDvait~~G-p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 233 -----------------PGLGYIGWDVAITEDG-PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred -----------------CCCCeEEEEEEEcCCC-cEEEEeeCCCCCCcHhh
Confidence 3568899999999999 999999999 999854
No 18
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.01 E-value=9.4e-09 Score=102.01 Aligned_cols=147 Identities=16% Similarity=0.114 Sum_probs=85.1
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGL 210 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~ 210 (395)
.-.||+||..++.+.||.++++.+++.. .....+||+||+ |+.+.+ -|+..... +.+. .-+.
T Consensus 165 ~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~E~sv--~vl~~~~~-~~~~--~~~~ 233 (343)
T PRK14568 165 TYPVFVKPARSGSSFGVSKVNSADELDYAIESARQYDSKVLIEEAVV------GSEVGC--AVLGNGAD-LVVG--EVDQ 233 (343)
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC------CEEEEE--EEEcCCCC-ccee--cceE
Confidence 3479999999999999999999888732 234689999996 665543 33321111 1110 0011
Q ss_pred EEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHc
Q psy9480 211 VRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVY 290 (395)
Q Consensus 211 vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~ 290 (395)
++....-|+.... + +. .... ....... -. .-.+.+.++|++++.+++.++
T Consensus 234 i~~~~~~~~~~~k------~---~~-------~~g~----~~~~~~~--------Pa-~l~~~~~~~i~~~a~~~~~~L- 283 (343)
T PRK14568 234 IRLSHGFFRIHQE------N---EP-------EKGS----ENSTIIV--------PA-DISAEERSRVQETAKAIYRAL- 283 (343)
T ss_pred EecCCCccchhhh------h---cc-------ccCC----CCeeEEe--------CC-CCCHHHHHHHHHHHHHHHHHh-
Confidence 1111111111000 0 00 0000 0000000 00 012455667777777766555
Q ss_pred hHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 291 PILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+|....++||++|+++++||+|||+.|+++..+.+
T Consensus 284 --------------------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 284 --------------------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred --------------------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCHH
Confidence 57789999999999999999999999999976644
No 19
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.98 E-value=2.8e-08 Score=99.40 Aligned_cols=162 Identities=19% Similarity=0.254 Sum_probs=95.5
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGL 210 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~ 210 (395)
+-.+|+||.+++.|.||.++++.+++.. .....+||+||+ |+ ++++-|+ ......++ ..+-
T Consensus 171 g~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~------Gr--Ei~v~Vl--g~~~~~v~--~~~E 238 (364)
T PRK14570 171 GYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE------AR--EIECSVI--GNEQIKIF--TPGE 238 (364)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC------CE--EEEEEEE--CCCCceEe--eeEE
Confidence 4579999999999999999999888732 234689999996 54 5666666 21122222 1222
Q ss_pred EEeccCC-CCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q psy9480 211 VRLATCQ-YTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISV 289 (395)
Q Consensus 211 vR~a~~~-y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~ 289 (395)
+.+.... |+- + ..|..+ .+...... . -... .+.+.++|++++.+++.++
T Consensus 239 i~~~~~~f~dy------~------~Ky~~~-----------~~~~~~~~-----~-Pa~l-~~e~~~~i~~~A~~~~~aL 288 (364)
T PRK14570 239 IVVQDFIFYDY------D------AKYSTI-----------PGNSIVFN-----I-PAHL-DTKHLLDIKEYAFLTYKNL 288 (364)
T ss_pred EEeCCCCccCH------H------HhcCCC-----------CCCceEEE-----C-CCCC-CHHHHHHHHHHHHHHHHHh
Confidence 2221110 110 0 000000 00000000 0 0001 2456677888887777665
Q ss_pred chHHHHHhhhhcCcccCCCCCCceEEEeeeEEecC-CCceEEEEeeCCCCCCCCCcchHHH------HHHHHHHHhhhcc
Q psy9480 290 YPILKEKYEDLLPEHYHHNVSASFEILGFDILIDS-TMKPFLLEVNRSPSFNIAGIVDERV------KRTLIYDTFKILN 362 (395)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~-~~kpwLLEVN~~P~l~~~~~~d~~v------k~~li~d~~~l~~ 362 (395)
+|..+..+||++|+ ++++|++|||+.|+|+..+.+-... ...|++.+++.+.
T Consensus 289 ---------------------g~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~li~~a~ 347 (364)
T PRK14570 289 ---------------------ELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNLIDLAF 347 (364)
T ss_pred ---------------------CCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 68899999999996 5999999999999999876543222 2455555555443
No 20
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.97 E-value=3.1e-08 Score=96.29 Aligned_cols=142 Identities=18% Similarity=0.269 Sum_probs=84.6
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGL 210 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~ 210 (395)
.-.||+||..|+.|.||.++.+.+++.. ....++||+||+ |+ ++++-|+....++ .++ . .
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~------G~--E~sv~vl~~~~~~-~vl--~--~ 191 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP------GR--EMTVSILETEKGF-EVL--P--I 191 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc------ce--EEEEEEEcCCCCe-eee--c--e
Confidence 4579999999999999999999887632 234699999996 54 7777777443221 111 1 0
Q ss_pred EEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHc
Q psy9480 211 VRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVY 290 (395)
Q Consensus 211 vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~ 290 (395)
...... .+. +.+-++|. .|.... ...... .+.+.++|++++.+++.++
T Consensus 192 ~e~~~~-------~~~---~~~~~k~~-------------~g~~~~-------~~p~~l-~~~~~~~i~~~a~~~~~~l- 239 (299)
T PRK14571 192 LELRPK-------RRF---YDYVAKYT-------------KGETEF-------ILPAPL-NPEEERLVKETALKAFVEA- 239 (299)
T ss_pred EEEecC-------CCc---cccccccC-------------CCCeeE-------EeCCCC-CHHHHHHHHHHHHHHHHHh-
Confidence 100000 000 00001110 000000 000001 1445666777766666544
Q ss_pred hHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 291 PILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+|....++||+++ +++||+||||..|++...+.+
T Consensus 240 --------------------g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~ 273 (299)
T PRK14571 240 --------------------GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDL 273 (299)
T ss_pred --------------------CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHH
Confidence 4668899999997 579999999999999987644
No 21
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.96 E-value=4.8e-08 Score=94.98 Aligned_cols=157 Identities=22% Similarity=0.337 Sum_probs=89.8
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceee
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFD 188 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFD 188 (395)
.|+|+.+.. .+++....... +-.+|+||..|+.|+||.++.+.+++.. ....++||+||+ |+ +
T Consensus 113 ~p~~~~~~~-~~~~~~~~~~~-~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--E 182 (304)
T PRK01372 113 TPPWIVLTR-EEDLLAAIDKL-GLPLVVKPAREGSSVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK------GR--E 182 (304)
T ss_pred CCCEEEEeC-cchHHHHHhhc-CCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC------CE--E
Confidence 677777752 22233333322 3468999999999999999999887632 235699999996 54 6
Q ss_pred eEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcC
Q psy9480 189 LRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQG 268 (395)
Q Consensus 189 lRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g 268 (395)
+++.|+-...-| + +++.... + .+..-+++.. ++...... ..
T Consensus 183 ~~v~vi~~~~~~--~-------~~~~~~~-------~---~~~~~~~~~~------------g~~~~~~p--------~~ 223 (304)
T PRK01372 183 LTVAVLGGKALP--V-------IEIVPAG-------E---FYDYEAKYLA------------GGTQYICP--------AG 223 (304)
T ss_pred EEEEEECCCccc--e-------EEEEecC-------C---EEeeeccccC------------CCeEEEeC--------CC
Confidence 666655221111 1 1111100 0 0000011100 00000000 00
Q ss_pred CChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCC
Q psy9480 269 LNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAG 343 (395)
Q Consensus 269 ~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~ 343 (395)
. .+.+.++|++++.+++.++ ++-...++||++|++|++++||||..|++...+
T Consensus 224 ~-~~~~~~~l~~~a~~~~~~l---------------------g~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~ 276 (304)
T PRK01372 224 L-PAEIEAELQELALKAYRAL---------------------GCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHS 276 (304)
T ss_pred C-CHHHHHHHHHHHHHHHHHh---------------------CCcceEEEEEEEcCCCCEEEEEecCCCCCCccc
Confidence 1 1344556666666555443 234667999999999999999999999998765
No 22
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.93 E-value=6.5e-08 Score=94.51 Aligned_cols=139 Identities=18% Similarity=0.269 Sum_probs=83.9
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEeccc-CceEEEEcce
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCID-PLRIFVYNNG 209 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~-pl~vy~~~~g 209 (395)
.-.+|+||..++.|+||.++.+.+++.. ....++||+||+ |+ ++++.++..... +.... ..+.
T Consensus 146 ~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~------G~--e~~v~vi~~~~~~~~~~~-~~~~ 216 (315)
T TIGR01205 146 GFPVIVKPAREGSSVGVSKVKSEEELQAALDEAFEYDEEVLVEQFIK------GR--ELEVSILGNEEALPIIEI-VPEI 216 (315)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCCC------CE--EEEEEEECCCCccceEEe-cCCC
Confidence 4579999999999999999999888732 245699999995 54 677777632210 11100 0000
Q ss_pred EEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q psy9480 210 LVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISV 289 (395)
Q Consensus 210 ~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~ 289 (395)
. ++ ..|. .+| .. ++...... ... .+.+.++|++++.+++.++
T Consensus 217 ~-~~--~~~~--------------~~~---------~~---~~~~~~~p--------~~l-~~~~~~~i~~~a~~~~~~l 258 (315)
T TIGR01205 217 E-GF--YDYE--------------AKY---------LD---GSTEYVIP--------APL-DEELEEKIKELALKAYKAL 258 (315)
T ss_pred C-Ce--eCcc--------------ccc---------CC---CCeeEEeC--------CCC-CHHHHHHHHHHHHHHHHHh
Confidence 0 00 0010 000 00 00000000 001 1345566777777766554
Q ss_pred chHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCc
Q psy9480 290 YPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGI 344 (395)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~ 344 (395)
++...+++||++|+++++|+||||..|++...+.
T Consensus 259 ---------------------g~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~ 292 (315)
T TIGR01205 259 ---------------------GCRGLARVDFFLDEEGEIYLNEINTIPGMTAISL 292 (315)
T ss_pred ---------------------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCCccH
Confidence 3446789999999999999999999999998654
No 23
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.90 E-value=5.8e-08 Score=94.45 Aligned_cols=138 Identities=16% Similarity=0.216 Sum_probs=83.8
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLV 211 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~v 211 (395)
.-.+|+||..|+.|.|+.++++.+++.. ....++||+||+ |+ ++++.|+-. ..+... .+
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI~------G~--E~tv~vl~~--~~~~~~-----~i 194 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVT------GK--EITVAIVND--EVYSSV-----WI 194 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHHhcCCEEEEcccc------cE--EEEEEEECC--cCcceE-----EE
Confidence 3469999999999999999999888742 124689999995 75 455555411 111111 01
Q ss_pred EeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHch
Q psy9480 212 RLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYP 291 (395)
Q Consensus 212 R~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~ 291 (395)
....+-|+. . ..|. ++..... .... .+.+..+|++++.+++.++
T Consensus 195 ~~~~~~~~~------~------~k~~-------------~~~~~~~--------P~~l-~~~~~~~i~~~a~~~~~~L-- 238 (296)
T PRK14569 195 EPQNEFYDY------E------SKYS-------------GKSIYHS--------PSGL-CEQKELEVRQLAKKAYDLL-- 238 (296)
T ss_pred ecCCCcCCh------h------hccC-------------CCcEEEe--------CCCC-CHHHHHHHHHHHHHHHHHh--
Confidence 101111110 0 0000 0000000 0001 1334556777777666554
Q ss_pred HHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 292 ILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+|-...++||++|++++||+||||+.|+++.++.+
T Consensus 239 -------------------g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~ 273 (296)
T PRK14569 239 -------------------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLS 273 (296)
T ss_pred -------------------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHH
Confidence 57788999999999999999999999999877643
No 24
>PRK05246 glutathione synthetase; Provisional
Probab=98.88 E-value=1.9e-08 Score=98.80 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=50.8
Q ss_pred cccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH-H---H---hc-c-cCcceeeeccccccccCCc
Q psy9480 115 FYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE-E---A---RG-I-YTESVSQLYMSNLLLMDGF 185 (395)
Q Consensus 115 ~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~-~---i---~~-~-~~~~IvQ~YI~~PlLi~gr 185 (395)
++|+|.... +.+++.+.+++. +..|+||..|++|+||++++..+ + + .. . ..++++|+||+.+- +
T Consensus 134 ~vP~T~~~~-~~~~~~~~~~~~--~~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~--~-- 206 (316)
T PRK05246 134 LMPPTLVTR-DKAEIRAFRAEH--GDIILKPLDGMGGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIK--E-- 206 (316)
T ss_pred cCCCEEEeC-CHHHHHHHHHHC--CCEEEEECCCCCccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCC--C--
Confidence 799998765 445555555553 36899999999999999995432 1 1 11 1 35799999996321 2
Q ss_pred eeeeEEEEE
Q psy9480 186 KFDLRVYVL 194 (395)
Q Consensus 186 KFDlRvyvl 194 (395)
-|+|++|+
T Consensus 207 -~D~Rv~vv 214 (316)
T PRK05246 207 -GDKRILLV 214 (316)
T ss_pred -CCEEEEEE
Confidence 39999987
No 25
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=98.85 E-value=1.1e-07 Score=94.53 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=91.0
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecc-cCceEEEEcce
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCI-DPLRIFVYNNG 209 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~-~pl~vy~~~~g 209 (395)
+-.+|+||..++.+.||.++++.+++.. ....+|||+||+ |+ ++++-|+.... +........-.
T Consensus 171 ~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~------G~--E~sv~vi~~~~~g~~~~~~l~~~ 242 (347)
T PRK14572 171 GFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS------GT--EVSCGVLERYRGGKRNPIALPAT 242 (347)
T ss_pred CCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc------cE--EEEEEEEeCccCCCCCceecccE
Confidence 4479999999999999999999888732 235689999996 65 45555553211 11110111111
Q ss_pred EEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q psy9480 210 LVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISV 289 (395)
Q Consensus 210 ~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~ 289 (395)
-++....-|+- . ..|. . ++.. ... -... .+.+.++|++++.+++.++
T Consensus 243 ei~~~~~~~d~------~------~ky~---------~---~~~~-~~~-------Pa~l-~~~~~~~i~~~a~~~~~~L 289 (347)
T PRK14572 243 EIVPGGEFFDF------E------SKYK---------Q---GGSE-EIT-------PARI-SDQEMKRVQELAIRAHESL 289 (347)
T ss_pred EEecCCCccCH------H------HccC---------C---CCeE-EEE-------CCCC-CHHHHHHHHHHHHHHHHHh
Confidence 11111111110 0 0110 0 0000 000 0001 2456677777777666554
Q ss_pred chHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHH------HHHHHHHHhhh
Q psy9480 290 YPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERV------KRTLIYDTFKI 360 (395)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~v------k~~li~d~~~l 360 (395)
+|....++||+++ ++++|++|||+.|++...+.+.... ..+|++.+++.
T Consensus 290 ---------------------g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~ii~~ 344 (347)
T PRK14572 290 ---------------------GCKGYSRTDFIIV-DGEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDLIEI 344 (347)
T ss_pred ---------------------CCcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4778899999997 5899999999999999876543322 24555555543
No 26
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.79 E-value=1.5e-07 Score=98.91 Aligned_cols=84 Identities=23% Similarity=0.377 Sum_probs=57.5
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEe-eCChHHHhc------
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKI-FNTLEEARG------ 165 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~l-i~~~~~i~~------ 165 (395)
..|....+.+.+.. . -+|+++.+. +.+++.+..++.+ ..|+||..|++|+||.+ +++.+++..
T Consensus 296 ~DK~~tk~lL~~aG------I-pVP~~~~~~-~~~~~~~~~~~~G--~vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~ 365 (547)
T TIGR03103 296 DDKRLTRRLVSEAG------L-QVPEQQLAG-NGEAVEAFLAEHG--AVVVKPVRGEQGKGISVDVRTPDDLEAAIAKAR 365 (547)
T ss_pred cCHHHHHHHHHHcC------c-CCCCEEEEC-CHHHHHHHHHHhC--CEEEEECCCCCCcCeEEecCCHHHHHHHHHHHH
Confidence 46665555554321 1 378888765 3445555554432 38999999999999997 888877632
Q ss_pred -ccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 166 -IYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 166 -~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
....++||+||+ ..|+|++|+
T Consensus 366 ~~~~~vlvEe~i~--------G~d~Rv~Vi 387 (547)
T TIGR03103 366 QFCDRVLLERYVP--------GEDLRLVVI 387 (547)
T ss_pred hcCCcEEEEEecc--------CCeEEEEEE
Confidence 234699999996 359999877
No 27
>PRK12458 glutathione synthetase; Provisional
Probab=98.74 E-value=2e-07 Score=92.41 Aligned_cols=97 Identities=22% Similarity=0.367 Sum_probs=62.8
Q ss_pred eecccCCCCcccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH
Q psy9480 82 RINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE 161 (395)
Q Consensus 82 ~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~ 161 (395)
.+|+-.....-..|..+.. ++. ..+|+|++.. +.+++.+++++......|+||..|++|+||+++++.+
T Consensus 117 viN~p~~i~~~~dK~~~~~--------l~~--~~vP~T~v~~-~~~~~~~~~~~~~~~pvVvKPl~G~gG~gV~~v~~~~ 185 (338)
T PRK12458 117 VVNDPDGLRIANNKLYFQS--------FPE--EVRPTTHISR-NKEYIREFLEESPGDKMILKPLQGSGGQGVFLIEKSA 185 (338)
T ss_pred EecCHHHHHhccCHHHHHh--------hcc--CCCCCEEEeC-CHHHHHHHHHHcCCCeEEEEECCCCCccCeEEEecCC
Confidence 4666555555566654421 122 3699998765 3455555554432233899999999999999997544
Q ss_pred H-----Hh---cccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 162 E-----AR---GIYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 162 ~-----i~---~~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
. +. .....+++|+||+.+ ...|+|++|+
T Consensus 186 ~~~~~~ile~~~~~~~~ivQeyI~~~-----~~gDiRv~vv 221 (338)
T PRK12458 186 QSNLNQILEFYSGDGYVIAQEYLPGA-----EEGDVRILLL 221 (338)
T ss_pred hhhHHHHHHHHhhCCCEEEEEcccCC-----CCCCEEEEEE
Confidence 2 21 124579999999732 2369999976
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.69 E-value=8.7e-07 Score=88.19 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=49.2
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCC-CCCceEeeCChHHHhcc-----
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGA-EGKGIKIFNTLEEARGI----- 166 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs-~G~GI~li~~~~~i~~~----- 166 (395)
.+|..+.+.+.+.. . =.|+++.+. +.+++.+...+- +-.+|+||..++ .|+|+.++++.+++...
T Consensus 97 ~dK~~~k~~l~~~g--i-----p~p~~~~~~-~~~~~~~~~~~~-g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~~ 167 (352)
T TIGR01161 97 QDRLTQKQFLQKLG--L-----PVPPFLVIK-DEEELDAALQEL-GFPVVLKARTGGYDGRGQYRIRNEADLPQAAKELG 167 (352)
T ss_pred cCHHHHHHHHHHcC--C-----CCCCccEeC-CHHHHHHHHHHc-CCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhcC
Confidence 46666655554321 1 246666665 334444433331 447999999875 89999999998887421
Q ss_pred cCcceeeeccc
Q psy9480 167 YTESVSQLYMS 177 (395)
Q Consensus 167 ~~~~IvQ~YI~ 177 (395)
...+|||+||+
T Consensus 168 ~~~~lvEe~I~ 178 (352)
T TIGR01161 168 DRECIVEEFVP 178 (352)
T ss_pred CCcEEEEecCC
Confidence 23799999996
No 29
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=98.69 E-value=6.8e-08 Score=85.52 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-cCccee
Q psy9480 94 SKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-YTESVS 172 (395)
Q Consensus 94 ~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-~~~~Iv 172 (395)
.|..+++.|+++.- -+|+++..... . .....||+||..|+.|.||.++++.++.... ....++
T Consensus 3 dK~~~~~~L~~~gi-------~~P~~~~~~~~-~--------~~~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~~~~~i~ 66 (161)
T PF02655_consen 3 DKLKTYKFLKELGI-------PVPTTLRDSEP-E--------PIDGPWVIKPRDGAGGEGIRIVDSEDELEEFLNKLRIV 66 (161)
T ss_dssp SHHHHHHHHTTT-S---------------EES-S----------SSSEEEEESS-------B--SS--TTE-------EE
T ss_pred CHHHHHHHHHccCC-------CCCCccccccc-c--------ccCCcEEEEeCCCCCCCCeEEECCchhhccccccceEE
Confidence 57777777754421 25544433210 0 1156899999999999999999998877322 222499
Q ss_pred eeccc
Q psy9480 173 QLYMS 177 (395)
Q Consensus 173 Q~YI~ 177 (395)
|+||+
T Consensus 67 Qe~i~ 71 (161)
T PF02655_consen 67 QEFIE 71 (161)
T ss_dssp EE---
T ss_pred eeeeC
Confidence 99997
No 30
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.58 E-value=2.5e-06 Score=87.26 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=40.8
Q ss_pred CceEEEeeeEEec-CCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhccc
Q psy9480 311 ASFEILGFDILID-STMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNL 363 (395)
Q Consensus 311 ~~Fel~G~D~llD-~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~ 363 (395)
....++.+|||++ +++.||+||+|+.|+......+...+...+++-+++++..
T Consensus 263 ~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g 316 (434)
T PLN02257 263 KFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKG 316 (434)
T ss_pred CcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcC
Confidence 4678899999999 7899999999999998655545555666666666666644
No 31
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.56 E-value=8.3e-07 Score=79.39 Aligned_cols=87 Identities=17% Similarity=0.360 Sum_probs=48.9
Q ss_pred CcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH----HHhc-----ccCcceeeeccccccccCC
Q psy9480 114 DFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE----EARG-----IYTESVSQLYMSNLLLMDG 184 (395)
Q Consensus 114 ~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~----~i~~-----~~~~~IvQ~YI~~PlLi~g 184 (395)
+++|+|++-. +.++..+++++. ..+|+||..|..|+|+++++..+ .+.. ....+++|+||+. .-+|
T Consensus 10 ~~~P~T~vs~-~~~~i~~f~~~~--~~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~--i~~G 84 (173)
T PF02955_consen 10 ELIPPTLVSR-DKEEIRAFIEEH--GDIVLKPLDGMGGRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPE--IKEG 84 (173)
T ss_dssp CCS--EEEES--HHHHHHHHHHH--SSEEEEESS--TTTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GG--GGG-
T ss_pred ccCcCEEEEC-CHHHHHHHHHHC--CCEEEEECCCCCCcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEecccc--ccCC
Confidence 6899999765 566666666663 33999999999999999998742 2211 2346999999974 3466
Q ss_pred ceeeeEEEEEEecccCceEEEEcceEEEeccC
Q psy9480 185 FKFDLRVYVLITCIDPLRIFVYNNGLVRLATC 216 (395)
Q Consensus 185 rKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~ 216 (395)
|.|+.++ .-.| -+.+.|....
T Consensus 85 ---DkRii~~--nG~~------~~av~R~P~~ 105 (173)
T PF02955_consen 85 ---DKRIILF--NGEP------SHAVRRIPAK 105 (173)
T ss_dssp ---EEEEEEE--TTEE-------SEEEEE--S
T ss_pred ---CEEEEEE--CCEE------hHHeecCCCC
Confidence 8898877 2112 2366776653
No 32
>PRK06849 hypothetical protein; Provisional
Probab=98.54 E-value=2.4e-06 Score=86.20 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=56.6
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc----c
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI----Y 167 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~----~ 167 (395)
+..|..+.+.+++.. ==+|+|+.+. +.+++.+...+..+..+|+||..|+.|+|+.++.+.+.+... .
T Consensus 114 ~~DK~~~~~~~~~~G-------ipvP~t~~v~-~~~~l~~~~~~~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~~~~~ 185 (389)
T PRK06849 114 LHNKWEFAEQARSLG-------LSVPKTYLIT-DPEAIRNFMFKTPHTPYVLKPIYSRFVRRVDLLPKEAALKELPISKD 185 (389)
T ss_pred hhCHHHHHHHHHHcC-------CCCCCEEEeC-CHHHHHHHhhcCCCCcEEEEeCcccCCCeEEEecCHHHhcccccCCC
Confidence 456666665554321 1369999875 334444433332245899999999999999998886655322 2
Q ss_pred CcceeeeccccccccCCceeeeEEE
Q psy9480 168 TESVSQLYMSNLLLMDGFKFDLRVY 192 (395)
Q Consensus 168 ~~~IvQ~YI~~PlLi~grKFDlRvy 192 (395)
.++|||+||+ |..+.+..+
T Consensus 186 ~~~ivQe~I~------G~e~~~~~~ 204 (389)
T PRK06849 186 NPWVMQEFIQ------GKEYCSYSI 204 (389)
T ss_pred CCeEEEEEec------CCeEEEEEE
Confidence 3599999997 666655443
No 33
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=98.53 E-value=2.6e-06 Score=83.53 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=50.6
Q ss_pred CcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH----HH---hc--ccCcceeeeccccccccCC
Q psy9480 114 DFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE----EA---RG--IYTESVSQLYMSNLLLMDG 184 (395)
Q Consensus 114 ~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~----~i---~~--~~~~~IvQ~YI~~PlLi~g 184 (395)
..+|+|.... +..++.+.+++. +..|+||..|++|+|+++++..+ .+ .. ....+++|+||+.+ .
T Consensus 132 ~~vP~T~v~~-~~~~~~~~~~~~--g~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~---~- 204 (312)
T TIGR01380 132 KVIPPTLVTR-DKAEIRAFLAEH--GDIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEI---K- 204 (312)
T ss_pred CCCCCEEEeC-CHHHHHHHHHHc--CCEEEEECCCCCCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccc---c-
Confidence 3699998754 445555555543 35899999999999999887522 11 11 13479999999732 1
Q ss_pred ceeeeEEEEE
Q psy9480 185 FKFDLRVYVL 194 (395)
Q Consensus 185 rKFDlRvyvl 194 (395)
.-|+|++|+
T Consensus 205 -~~D~Rv~vv 213 (312)
T TIGR01380 205 -EGDKRILLI 213 (312)
T ss_pred -CCCEEEEEE
Confidence 259999887
No 34
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.51 E-value=2.9e-06 Score=83.23 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHH-HHcCCCcEEEEcCCCCCCCCceEeeCChHHHh---cc
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSY-VREHPHQVFISKPSRGAEGKGIKIFNTLEEAR---GI 166 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~-~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~---~~ 166 (395)
...+|..+.+.+.+.. --.|+|+.+. +.+++... ....-+-.+|+||..|+.|+|+.++++.+++. ..
T Consensus 108 ~~~dK~~~~~~l~~~g-------ip~p~~~~~~-~~~~~~~~~~~~~~~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~ 179 (326)
T PRK12767 108 ICNDKWLTYEFLKENG-------IPTPKSYLPE-SLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEY 179 (326)
T ss_pred HHhcHHHHHHHHHHcC-------CCCCCEEccc-CHHHHHhhhhcccCCCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh
Confidence 3456776666665432 1258887664 34444432 12222457999999999999999999988873 23
Q ss_pred cCcceeeeccccccccCCceeeeEEEE
Q psy9480 167 YTESVSQLYMSNLLLMDGFKFDLRVYV 193 (395)
Q Consensus 167 ~~~~IvQ~YI~~PlLi~grKFDlRvyv 193 (395)
...++||+||. |+-+++.+++
T Consensus 180 ~~~~lvqeyi~------G~e~~v~~~~ 200 (326)
T PRK12767 180 VPNLIIQEFIE------GQEYTVDVLC 200 (326)
T ss_pred CCCeEEEeccC------CceEEEEEEE
Confidence 45799999995 6777766654
No 35
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.46 E-value=5.3e-06 Score=83.22 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=42.4
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-----------cCcceeeeccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-----------YTESVSQLYMS 177 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-----------~~~~IvQ~YI~ 177 (395)
.|+++.+. +.+++.....+ -+-.+|+||..|+.|+|+.++++.+++... ...+|||+||+
T Consensus 116 ~p~~~~~~-~~~~~~~~~~~-~g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 116 TSRYMFAD-SLDELREAVEK-IGYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID 186 (380)
T ss_pred CCCceEeC-CHHHHHHHHHH-cCCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC
Confidence 56666654 33444443332 245799999999999999999999887321 24699999996
No 36
>PRK07206 hypothetical protein; Provisional
Probab=98.44 E-value=3.3e-06 Score=85.75 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=57.4
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCC--CcEEEEcCCCCCCCCceEeeCChHHHhcc---
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHP--HQVFISKPSRGAEGKGIKIFNTLEEARGI--- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~--~~~wIvKP~~gs~G~GI~li~~~~~i~~~--- 166 (395)
..+|..+.+.+++.. --.|+++.+. +.+++.+.+...+ +..+|+||..|+.|+|++++++.+++...
T Consensus 106 ~~dK~~~r~~l~~~g-------i~~p~~~~~~-~~~e~~~~~~~~g~~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~ 177 (416)
T PRK07206 106 RRNKAEMINALAEAG-------LPAARQINTA-DWEEAEAWLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKHAFNA 177 (416)
T ss_pred hhCHHHHHHHHHHcC-------CCcccEEecC-CHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHH
Confidence 356776666665422 1357777665 3444444443321 23789999999999999999999887321
Q ss_pred -----------cCcceeeeccccccccCCceeeeEEE
Q psy9480 167 -----------YTESVSQLYMSNLLLMDGFKFDLRVY 192 (395)
Q Consensus 167 -----------~~~~IvQ~YI~~PlLi~grKFDlRvy 192 (395)
...++||+||+ |..|.+-++
T Consensus 178 ~~~~~~~~~~~~~~~lvEe~i~------G~E~sv~~~ 208 (416)
T PRK07206 178 ILGKANKLGLVNETVLVQEYLI------GTEYVVNFV 208 (416)
T ss_pred HHhccccCCCCCCeEEEEEccc------cEEEEEEEE
Confidence 24699999997 666665543
No 37
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.44 E-value=1.3e-05 Score=80.59 Aligned_cols=150 Identities=12% Similarity=0.147 Sum_probs=86.1
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCC-CCCCceEeeCChHHHhcc-----cCcceeeeccccccccCCceeee
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRG-AEGKGIKIFNTLEEARGI-----YTESVSQLYMSNLLLMDGFKFDL 189 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~g-s~G~GI~li~~~~~i~~~-----~~~~IvQ~YI~~PlLi~grKFDl 189 (395)
.|+++.+. +.+++.+...+ -+-.+|+||..+ +.|+|+.++++.+++... ...+|||+||+- ++ .+
T Consensus 115 ~p~~~~v~-s~~~l~~~~~~-~g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~~-----~~--E~ 185 (372)
T PRK06019 115 VAPFAVVD-SAEDLEAALAD-LGLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALLGSVPCILEEFVPF-----ER--EV 185 (372)
T ss_pred CCCceEeC-CHHHHHHHHHH-cCCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhcCCCCEEEEecCCC-----Ce--EE
Confidence 45555554 34444444433 245799999975 689999999999887421 347999999961 22 34
Q ss_pred EEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCC
Q psy9480 190 RVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGL 269 (395)
Q Consensus 190 Rvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~ 269 (395)
.+.++....+-..+|-. ++.+.. . +...+++. .. ..
T Consensus 186 sv~~~~~~~G~~~~~p~--------~e~~~~---~-------gi~~~~~~-----------pa---------------~~ 221 (372)
T PRK06019 186 SVIVARGRDGEVVFYPL--------VENVHR---N-------GILRTSIA-----------PA---------------RI 221 (372)
T ss_pred EEEEEECCCCCEEEeCC--------cccEEe---C-------CEEEEEEC-----------CC---------------CC
Confidence 44444322222111100 000000 0 00000000 00 01
Q ss_pred ChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 270 NSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 270 ~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
.+.+.+++++++.+++.++ ++.+.+++||+++++++++++|||..|.-.
T Consensus 222 -~~~~~~~~~~~a~~i~~~L---------------------~~~G~~~vEff~~~dg~~~v~EinpR~~~s 270 (372)
T PRK06019 222 -SAELQAQAEEIASRIAEEL---------------------DYVGVLAVEFFVTGDGELLVNEIAPRPHNS 270 (372)
T ss_pred -CHHHHHHHHHHHHHHHHHc---------------------CccceeEEEEEEcCCCeEEEEEecCCccCc
Confidence 1345566677766665443 356889999999999999999999999754
No 38
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=3.3e-06 Score=82.72 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=91.7
Q ss_pred HHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHh-------cccCcceeeeccccccccCCceeeeEEEEEEecccCceE
Q psy9480 131 SYVREHPHQVFISKPSRGAEGKGIKIFNTLEEAR-------GIYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRI 203 (395)
Q Consensus 131 ~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~-------~~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~v 203 (395)
..+....+-..++||......-|+..++...++. ...++.++++|+. ||++.+.+.-- +. ..
T Consensus 135 e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~------~rei~v~vl~~----~~-~~ 203 (317)
T COG1181 135 EEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT------GREIEVGVLGN----DY-EE 203 (317)
T ss_pred HHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHHHHhCCceeeccCCC------cceEEEEecCC----cc-cc
Confidence 3343344667899999999999999998876653 2456789999996 77776665321 00 00
Q ss_pred EEEcceEEEecc-CCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHH
Q psy9480 204 FVYNNGLVRLAT-CQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDII 282 (395)
Q Consensus 204 y~~~~g~vR~a~-~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii 282 (395)
..+.-+-+.... .=|+- +.++++. +|...... ..-.+.+.++|+++.
T Consensus 204 ~~l~~~eI~~~~~~fydy-e~Ky~~~----------------------gg~~~~~p---------a~lt~~~~~~i~~lA 251 (317)
T COG1181 204 QALPLGEIPPKGEEFYDY-EAKYLST----------------------GGAQYDIP---------AGLTDEIHEEIKELA 251 (317)
T ss_pred eecCceEEecCCCeEEee-eccccCC----------------------CCceeeCC---------CCCCHHHHHHHHHHH
Confidence 111111111110 00110 0011110 11000000 001266778888888
Q ss_pred HHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecC-CCceEEEEeeCCCCCCCCCcc
Q psy9480 283 IKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDS-TMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 283 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~-~~kpwLLEVN~~P~l~~~~~~ 345 (395)
.+++.++ +|-.+-|+||++|+ .+++||+|||++|+|...+.+
T Consensus 252 ~~a~~al---------------------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~ 294 (317)
T COG1181 252 LRAYKAL---------------------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLF 294 (317)
T ss_pred HHHHHhc---------------------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccc
Confidence 8777665 68889999999999 899999999999998877654
No 39
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.41 E-value=1.4e-06 Score=80.81 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=30.4
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhcccCcceeeeccc
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMS 177 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~~~~~~IvQ~YI~ 177 (395)
...+|+||..||+|.||.+..+..++ .|+|+||+
T Consensus 138 ~~k~ViKp~dgCgge~i~~~~~~pd~------~i~qEfIe 171 (307)
T COG1821 138 PKKYVIKPADGCGGEGILFGRDFPDI------EIAQEFIE 171 (307)
T ss_pred CceEEecccccCCcceeeccCCCcch------hhHHHhcC
Confidence 57899999999999999998887765 69999997
No 40
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.40 E-value=1e-05 Score=89.21 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=86.0
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGL 210 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~ 210 (395)
+-..|+||..++.|.||.++++.+++.. .....+|++||. .||.|.+-+ +-..... +......
T Consensus 610 g~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-----~grEi~v~v--l~~~~~~---~~~~~~~ 679 (809)
T PRK14573 610 SFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-----GSREIEVSC--LGDGSSA---YVIAGPH 679 (809)
T ss_pred CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-----CCEEEEEEE--EeCCCCc---eEeccce
Confidence 4468999999999999999999888742 234688888874 356555443 3222111 1100000
Q ss_pred EEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHc
Q psy9480 211 VRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVY 290 (395)
Q Consensus 211 vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~ 290 (395)
-+.+...+ +-+-.+|..... ........ ... .+.+.++|++++.+++.++
T Consensus 680 e~~~~~~f-----------~dy~~Ky~~~g~---------~~~~~~~P--------a~l-~~~~~~~i~~~a~~~~~aL- 729 (809)
T PRK14573 680 ERRGSGGF-----------IDYQEKYGLSGK---------SSAQIVFD--------LDL-SKESQEQVLELAERIYRLL- 729 (809)
T ss_pred EEccCCCe-----------eCchhcccCCCC---------CceEEecC--------CCC-CHHHHHHHHHHHHHHHHHh-
Confidence 01110000 000011110000 00000000 001 2556777888877777665
Q ss_pred hHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 291 PILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+|..+..+||++|+++++|++|||+.|+|+..|.+
T Consensus 730 --------------------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 730 --------------------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPF 764 (809)
T ss_pred --------------------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHH
Confidence 58899999999999999999999999999886643
No 41
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.34 E-value=9.7e-06 Score=88.10 Aligned_cols=86 Identities=22% Similarity=0.292 Sum_probs=57.5
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEe-eCChHHHhc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKI-FNTLEEARG----- 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~l-i~~~~~i~~----- 165 (395)
...|....+.+.+.. ==+|+++.+. +.+++.+..++- +-..|+||..|+.|+|+.+ +++.+++..
T Consensus 212 ~~DK~~tk~lL~~~G-------IPvP~~~~v~-s~~~a~~~a~~i-G~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a 282 (727)
T PRK14016 212 ACDKELTKRLLAAAG-------VPVPEGRVVT-SAEDAWEAAEEI-GYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVA 282 (727)
T ss_pred hCCHHHHHHHHHHCC-------cCCCCeeEeC-CHHHHHHHHHHc-CCCEEEEECCCCCCCceEEecCCHHHHHHHHHHH
Confidence 456666655554322 1256766553 344444444432 4568999999999999998 888887632
Q ss_pred --ccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 166 --IYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 166 --~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
....++||+||. | .|+|++|+
T Consensus 283 ~~~~~~viVEe~I~------G--~d~Rv~Vv 305 (727)
T PRK14016 283 SKESSDVIVERYIP------G--KDHRLLVV 305 (727)
T ss_pred HHhCCeEEEEEecC------C--ceEEEEEE
Confidence 235799999996 3 58998776
No 42
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.33 E-value=5.4e-05 Score=77.18 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=105.1
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG------- 165 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~------- 165 (395)
.+|..+.+.|+++. .+ .|+++.+. +.++..+..++- +-.+|+||..++.|+|+.++.+.+++..
T Consensus 101 ~dK~~~k~~l~~~g------ip-~p~~~~~~-~~~~~~~~~~~~-~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~ 171 (420)
T PRK00885 101 GSKAFAKDFMARYG------IP-TAAYETFT-DAEEALAYLDEK-GAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLA 171 (420)
T ss_pred cCHHHHHHHHHHcC------CC-CCCeEEeC-CHHHHHHHHHHc-CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhh
Confidence 46666666555421 12 56666554 344444444332 3468999999999999999999887631
Q ss_pred ------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccc
Q psy9480 166 ------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVN 239 (395)
Q Consensus 166 ------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~ 239 (395)
....++||+||+ |+.|.+- +++.. +...++...+-.-|+....+.+ +.. +
T Consensus 172 ~~~~~~~~~~vlvEe~i~------G~E~sv~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~----~~g----~------- 227 (420)
T PRK00885 172 GNKFGDAGARVVIEEFLD------GEEASFF--AFVDG-ENVLPLPTAQDHKRAGDGDTGP----NTG----G------- 227 (420)
T ss_pred cccccCCCCeEEEEEccC------CcEEEEE--EEECC-CceEeceeeEeeeecccCCCCC----CCC----C-------
Confidence 124699999996 6555443 34332 2222111111111111111110 000 0
Q ss_pred cCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHH-HHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEee
Q psy9480 240 KSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDD-IIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGF 318 (395)
Q Consensus 240 k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~-ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~ 318 (395)
.+. ++.. ..-.+.+.+++.+ ++..++.++.. ........+.+
T Consensus 228 -----------~~~-~~p~---------~~l~~~~~~~~~~~i~~~~~~al~~----------------~gl~~~G~~~v 270 (420)
T PRK00885 228 -----------MGA-YSPA---------PVVTEEVVERVMEEIIKPTVKGMAA----------------EGIPYTGVLYA 270 (420)
T ss_pred -----------Cce-eccC---------CCCCHHHHHHHHHHHHHHHHHHHHH----------------cCCCcEeEEEE
Confidence 000 0000 0001333444543 55444444321 01124578899
Q ss_pred eEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcccc
Q psy9480 319 DILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLN 364 (395)
Q Consensus 319 D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~~ 364 (395)
||++++++ |+|||||..|+-.....+.......+++-+++++...
T Consensus 271 e~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g~ 315 (420)
T PRK00885 271 GLMITKDG-PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADGK 315 (420)
T ss_pred EEEEECCC-cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcCC
Confidence 99999876 8999999999754333344444456666666666553
No 43
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.33 E-value=2.1e-05 Score=80.93 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=49.4
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCee-eccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSW-SLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~-~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---- 166 (395)
...|..+.+.+++.. .+ .|+++ .+..+.++.....++- +-.+|+||..|+.|+|+.++++.+++...
T Consensus 113 ~~DK~~~r~~l~~~g------ip-~pp~~~~~~~~~~e~~~~~~~i-g~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~ 184 (449)
T TIGR00514 113 MGDKVSAIETMKKAG------VP-CVPGSDGLVEDEEENVRIAKRI-GYPVIIKATAGGGGRGMRVVREPDELVKSISMT 184 (449)
T ss_pred hCCHHHHHHHHHHCC------CC-CCCCcccCcCCHHHHHHHHHHh-CCCEEEEeCCCCCCCccEEECCHHHHHHHHHHH
Confidence 456776666654321 11 23333 2333444444433331 34689999999999999999999887321
Q ss_pred ---------cCcceeeecccc
Q psy9480 167 ---------YTESVSQLYMSN 178 (395)
Q Consensus 167 ---------~~~~IvQ~YI~~ 178 (395)
...++||+||+.
T Consensus 185 ~~~~~~~~~~~~vlvEe~i~g 205 (449)
T TIGR00514 185 RAEAKAAFGNDGVYIEKYIEN 205 (449)
T ss_pred HHHHHHhCCCCCEEEEECCCC
Confidence 235899999973
No 44
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.30 E-value=4.5e-05 Score=78.02 Aligned_cols=51 Identities=14% Similarity=0.020 Sum_probs=36.7
Q ss_pred CceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhc
Q psy9480 311 ASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKIL 361 (395)
Q Consensus 311 ~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~ 361 (395)
.+..++.+|||++++++||+||+|..|+-.....+...+...+++-+++++
T Consensus 269 ~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~ 319 (426)
T PRK13789 269 PYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAAS 319 (426)
T ss_pred CceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHH
Confidence 377999999999999999999999999865544444444444444444433
No 45
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.29 E-value=1.6e-05 Score=88.06 Aligned_cols=86 Identities=20% Similarity=0.257 Sum_probs=56.9
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEe-eCChHHHhc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKI-FNTLEEARG----- 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~l-i~~~~~i~~----- 165 (395)
...|....+.|.++. . =+|++..+. +.++..+...+- +-..++||..|++|+|+.+ +++.+++..
T Consensus 211 a~DK~~tk~lL~~~G------I-pvP~~~~~~-s~~ea~~~~~~i-g~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a 281 (864)
T TIGR02068 211 ACDKDLTKEILSDAG------V-PVPEGTVVQ-SAEDAWEAAQDL-GYPVVIKPYDGNHGRGVTINILTRDEIESAYEAA 281 (864)
T ss_pred HcCHHHHHHHHHHcC------c-CCCCEEEEC-CHHHHHHHHHHc-CCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHH
Confidence 346666666655432 1 267777664 333333333332 3567999999999999998 888887632
Q ss_pred --ccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 166 --IYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 166 --~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
....++||+||. | .|+|++|+
T Consensus 282 ~~~~~~vlVEefI~------G--~e~rvlVv 304 (864)
T TIGR02068 282 VEESSGVIVERFIT------G--RDHRLLVV 304 (864)
T ss_pred HhhCCcEEEEEecc------C--CEEEEEEE
Confidence 235699999995 5 48888775
No 46
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.28 E-value=6.5e-05 Score=75.67 Aligned_cols=86 Identities=26% Similarity=0.364 Sum_probs=55.1
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG------- 165 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~------- 165 (395)
.+|....+.|+++.- | .|++..+. +.++..++.++- +-..|+||..++.|+|+.++.+.+++..
T Consensus 66 ~dK~~~k~~l~~~gI--p-----tp~~~~~~-~~~ea~~~~~~~-g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~ 136 (379)
T PRK13790 66 GSKLFAKKIMEKYNI--P-----TADYKEVE-RKKDALTYIENC-ELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYG 136 (379)
T ss_pred CCHHHHHHHHHHCCC--C-----CCCEEEEC-CHHHHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh
Confidence 566666666654321 1 24444433 344444444432 4578999999999999999999887632
Q ss_pred --ccCcceeeeccccccccCCceeeeEEEE
Q psy9480 166 --IYTESVSQLYMSNLLLMDGFKFDLRVYV 193 (395)
Q Consensus 166 --~~~~~IvQ~YI~~PlLi~grKFDlRvyv 193 (395)
....+|||+||+ |..+.+.+++
T Consensus 137 ~~~~~~vlvEe~i~------G~E~sv~~~~ 160 (379)
T PRK13790 137 DEEEGTVVFETFLE------GEEFSLMTFV 160 (379)
T ss_pred cCCCCeEEEEEccc------CceEEEEEEe
Confidence 123589999996 6677776543
No 47
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.28 E-value=6.6e-05 Score=76.51 Aligned_cols=77 Identities=26% Similarity=0.267 Sum_probs=50.4
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcE-EEEcCCCCCCCCceEeeCChHHHhc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQV-FISKPSRGAEGKGIKIFNTLEEARG----- 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~-wIvKP~~gs~G~GI~li~~~~~i~~----- 165 (395)
..+|..+.+.+.++. .+ .|++..+. +.++..+.++.. +-. +|+||..++.|+|+.++++.+++..
T Consensus 102 ~~dK~~~k~~l~~~g------Ip-~p~~~~~~-~~~~~~~~~~~~-g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~ 172 (423)
T TIGR00877 102 EGSKAFAKDFMKRYG------IP-TAEYEVFT-DPEEALSYIQEK-GAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEI 172 (423)
T ss_pred HCCHHHHHHHHHHCC------CC-CCCeEEEC-CHHHHHHHHHhc-CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHH
Confidence 357777776665432 12 45555543 344444444432 335 9999999999999999999887632
Q ss_pred --c-----cCcceeeeccc
Q psy9480 166 --I-----YTESVSQLYMS 177 (395)
Q Consensus 166 --~-----~~~~IvQ~YI~ 177 (395)
. ...++||+||+
T Consensus 173 ~~~~~g~~~~~~lvEe~i~ 191 (423)
T TIGR00877 173 LEQKFGDAGERVVIEEFLD 191 (423)
T ss_pred HHHhcCCCCCeEEEEECcc
Confidence 1 24699999996
No 48
>PRK05586 biotin carboxylase; Validated
Probab=98.27 E-value=5.3e-05 Score=77.93 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=37.8
Q ss_pred hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccc
Q psy9480 125 QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSN 178 (395)
Q Consensus 125 ~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~ 178 (395)
+.+++.+..+. -+-..|+||..|+.|+|+.++++.+++... ...++||+||+.
T Consensus 140 ~~~e~~~~~~~-igyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g 205 (447)
T PRK05586 140 NEEEALEIAKE-IGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIEN 205 (447)
T ss_pred CHHHHHHHHHH-cCCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCC
Confidence 34444443333 134689999999999999999998887321 246899999973
No 49
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.27 E-value=4.2e-05 Score=86.43 Aligned_cols=171 Identities=16% Similarity=0.189 Sum_probs=96.1
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI----- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~----- 166 (395)
+..|....+.+++.. .+..|-|.....+.++..+..++- +-.+|+||..|+.|+|++++++.+++...
T Consensus 113 ~~DK~~ar~la~~~G------VPvpp~t~~~v~~~eea~~~ae~i-GyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~ 185 (1143)
T TIGR01235 113 LGDKVAARNLAIKAG------VPVVPGTDGPPETMEEVLDFAAAI-GYPVIIKASWGGGGRGMRVVRSEADVADAFQRAK 185 (1143)
T ss_pred hcCHHHHHHHHHHcC------CCCCCCcccCcCCHHHHHHHHHHc-CCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHH
Confidence 356665555444321 233343433333455544444432 45699999999999999999998887321
Q ss_pred --------cCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceeccccc
Q psy9480 167 --------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSV 238 (395)
Q Consensus 167 --------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i 238 (395)
...++||+||+.| -++.+-++....+.. +.++ -|-|+..-
T Consensus 186 ~ea~~~fg~~~vlIEefI~g~-------reIeVqVlgD~~G~v-v~l~----eRdcsvqr-------------------- 233 (1143)
T TIGR01235 186 SEAKAAFGNDEVYVEKLIERP-------RHIEVQLLGDKHGNV-VHLF----ERDCSVQR-------------------- 233 (1143)
T ss_pred HHHHHhcCCCcEEEEEcCCCC-------eEEEEEEEEeCCCCE-EEEE----eccccccc--------------------
Confidence 2458999999854 256666664433221 1111 12222110
Q ss_pred ccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEee
Q psy9480 239 NKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGF 318 (395)
Q Consensus 239 ~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~ 318 (395)
.+...... .... .. .+.+.++|++++.+++.++ +.-....+
T Consensus 234 --r~qk~ie~--aPa~-------------~L-~~e~r~~I~~~A~kla~aL---------------------gy~G~gtV 274 (1143)
T TIGR01235 234 --RHQKVVEV--APAP-------------YL-SREVRDEIAEYAVKLAKAV---------------------NYINAGTV 274 (1143)
T ss_pred --cCceEEEE--eCCC-------------CC-CHHHHHHHHHHHHHHHHHc---------------------CCcceEEE
Confidence 00000000 0000 01 1345566777776655443 23345689
Q ss_pred eEEecCCCceEEEEeeCCCCCC
Q psy9480 319 DILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 319 D~llD~~~kpwLLEVN~~P~l~ 340 (395)
||++|+++++|+||||..+.-.
T Consensus 275 EFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 275 EFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred EEEEeCCCcEEEEEeecCCCcc
Confidence 9999999999999999999754
No 50
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.24 E-value=4e-05 Score=78.70 Aligned_cols=77 Identities=18% Similarity=0.153 Sum_probs=48.2
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCe--eeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRS--WSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG---- 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T--~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---- 165 (395)
..+|..+.+.+.+..- + .|++ +.+ .+..+..+...+- +-.+|+||..|+.|+|+.++++.+++..
T Consensus 113 ~~dK~~~k~~l~~~gI------p-~p~~~~~~~-~~~~e~~~~~~~~-~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~ 183 (450)
T PRK06111 113 MGSKIEARRAMQAAGV------P-VVPGITTNL-EDAEEAIAIARQI-GYPVMLKASAGGGGIGMQLVETEQELTKAFES 183 (450)
T ss_pred hCCHHHHHHHHHHCCC------C-CCCCcCcCc-CCHHHHHHHHHHh-CCCEEEEeCCCCCCceEEEECCHHHHHHHHHH
Confidence 3567766666554221 1 2222 333 3444444433332 4568999999999999999999888732
Q ss_pred ---------ccCcceeeeccc
Q psy9480 166 ---------IYTESVSQLYMS 177 (395)
Q Consensus 166 ---------~~~~~IvQ~YI~ 177 (395)
....++||+||+
T Consensus 184 ~~~~~~~~~~~~~~lvEe~i~ 204 (450)
T PRK06111 184 NKKRAANFFGNGEMYIEKYIE 204 (450)
T ss_pred HHHHHHHhcCCCcEEEEcccC
Confidence 123589999997
No 51
>PRK06524 biotin carboxylase-like protein; Validated
Probab=98.24 E-value=3.7e-05 Score=79.04 Aligned_cols=137 Identities=12% Similarity=0.034 Sum_probs=80.0
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhcc------cCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcc--e
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARGI------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNN--G 209 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~~------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~--g 209 (395)
+-..++||..|+.|+|+.++++.+++... ....+||+||. |+.+.+=+++. ..+........+ |
T Consensus 181 GyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~------GrEitVev~vd--~dG~Vv~~~~~e~vg 252 (493)
T PRK06524 181 GDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR------NVEVCIEACVT--RHGTVIGPAMTSLVG 252 (493)
T ss_pred CCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC------cEEEEEEEEEe--CCCCEEecccccccc
Confidence 34688999999999999999999887421 13478899985 66665544432 111110000000 0
Q ss_pred EEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q psy9480 210 LVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISV 289 (395)
Q Consensus 210 ~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~ 289 (395)
..++. +|.. ...+ .+++ + ..-.+.+.++|.+++.++..++
T Consensus 253 ~~Ei~--~yr~----G~~~--~~i~---------------------P-----------A~L~~ei~eeIqeiA~ka~~aL 292 (493)
T PRK06524 253 YPELT--PYRG----GWCG--NDIW---------------------P-----------GALPPAQTRKAREMVRKLGDVL 292 (493)
T ss_pred ceEEE--EccC----CeEE--EEEc---------------------c-----------CCCCHHHHHHHHHHHHHHHHHh
Confidence 00110 1110 0000 0000 0 0112455667777777666554
Q ss_pred chHHHHHhhhhcCcccCCCCCCceEEEeeeEEecC-CCceEEEEeeCCCCCC
Q psy9480 290 YPILKEKYEDLLPEHYHHNVSASFEILGFDILIDS-TMKPFLLEVNRSPSFN 340 (395)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~-~~kpwLLEVN~~P~l~ 340 (395)
.. .+|..++++||++|. ++++|++|||..|+=.
T Consensus 293 ~~------------------lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~ 326 (493)
T PRK06524 293 SR------------------EGYRGYFEVDLLHDLDADELYLGEVNPRLSGA 326 (493)
T ss_pred hc------------------CCCEEEEEEEEEEECCCCeEEEEEEeCCcccc
Confidence 11 158999999999995 6999999999988774
No 52
>PRK08462 biotin carboxylase; Validated
Probab=98.23 E-value=4.9e-05 Score=78.07 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=49.8
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI----- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~----- 166 (395)
...|..+.+.+.+.. .+..|.++..-.+.++.....++ -+-.+|+||..|+.|+|+.++++.+++...
T Consensus 115 ~~dK~~~r~~l~~~g------Ip~pp~~~~~~~~~~~~~~~~~~-~g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~ 187 (445)
T PRK08462 115 MSDKSKAKEVMKRAG------VPVIPGSDGALKSYEEAKKIAKE-IGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAE 187 (445)
T ss_pred hCCHHHHHHHHHHCC------CCCCCCcccccCCHHHHHHHHHH-cCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHH
Confidence 457777666664321 12223233332344444443333 245799999999999999999998887321
Q ss_pred --------cCcceeeecccc
Q psy9480 167 --------YTESVSQLYMSN 178 (395)
Q Consensus 167 --------~~~~IvQ~YI~~ 178 (395)
...++||+||+.
T Consensus 188 ~~~~~~~~~~~vlvEe~i~g 207 (445)
T PRK08462 188 SEALSAFGDGTMYMEKFINN 207 (445)
T ss_pred HHHHhccCCCcEEEeccCCC
Confidence 135899999974
No 53
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.23 E-value=3.2e-05 Score=79.49 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=37.3
Q ss_pred hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccc
Q psy9480 125 QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMS 177 (395)
Q Consensus 125 ~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~ 177 (395)
+.++..+...+- +-.+|+||..|+.|+|+.++++.+++... ...++||+||+
T Consensus 140 ~~~~~~~~~~~~-g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~ 204 (451)
T PRK08591 140 DEEEALAIAKEI-GYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE 204 (451)
T ss_pred CHHHHHHHHHHc-CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 344444443332 34689999999999999999998887321 23589999997
No 54
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.20 E-value=7.1e-05 Score=77.46 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=38.0
Q ss_pred hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccc
Q psy9480 125 QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSN 178 (395)
Q Consensus 125 ~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~ 178 (395)
+.++.....++ -+-.+|+||..|+.|+|+.++++.+++... ...++||+||+.
T Consensus 143 ~~~e~~~~~~~-igyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~ 208 (467)
T PRK12833 143 SLDAALEVAAR-IGYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR 208 (467)
T ss_pred CHHHHHHHHHH-hCCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 34444443333 245799999999999999999998887421 245899999973
No 55
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.18 E-value=4.4e-05 Score=76.95 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=41.7
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-----------cCcceeeeccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-----------YTESVSQLYMS 177 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-----------~~~~IvQ~YI~ 177 (395)
.|+++.+. +.++..+...+ -+-.+|+||..|+.|+|+.++++.+++... ...+|||+||+
T Consensus 129 ~p~~~~~~-s~~~l~~~~~~-~g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~ 199 (395)
T PRK09288 129 TSPYRFAD-SLEELRAAVEE-IGYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID 199 (395)
T ss_pred CCCceEEC-CHHHHHHHHHh-cCCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC
Confidence 45555544 34444443333 144799999999999999999998887321 14699999996
No 56
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=98.17 E-value=8.6e-05 Score=77.08 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=50.6
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeecc-chHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLP-YQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG---- 165 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp-~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---- 165 (395)
.+..|..+.+.+.+.. .+..|-++... .+.++..+..++- +-.+|+||..|+.|+||.++++.+++..
T Consensus 111 ~~~DK~~~k~~l~~~g------Ipvpp~~~~~~~~~~~~~~~~~~~i-gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~ 183 (478)
T PRK08463 111 KMGNKNIARYLMKKNG------IPIVPGTEKLNSESMEEIKIFARKI-GYPVILKASGGGGGRGIRVVHKEEDLENAFES 183 (478)
T ss_pred hhCcHHHHHHHHHHcC------CCCCCCccccCCCCHHHHHHHHHHh-CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHH
Confidence 3556665555554321 22334344432 2444444444331 4468999999999999999999888732
Q ss_pred ---------ccCcceeeecccc
Q psy9480 166 ---------IYTESVSQLYMSN 178 (395)
Q Consensus 166 ---------~~~~~IvQ~YI~~ 178 (395)
....++||+||+.
T Consensus 184 ~~~~a~~~~~~~~vlvEefI~~ 205 (478)
T PRK08463 184 CKREALAYFNNDEVFMEKYVVN 205 (478)
T ss_pred HHHHHHHhcCCCcEEEEecCCC
Confidence 1245899999974
No 57
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.16 E-value=3.1e-05 Score=83.43 Aligned_cols=86 Identities=23% Similarity=0.313 Sum_probs=53.8
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCC---hHHHh-----
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNT---LEEAR----- 164 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~---~~~i~----- 164 (395)
..|....+.|.+.. . =+|++..+... .+....+..-.+...++||..|++|+||.++.+ .+++.
T Consensus 474 ~DK~~TK~iL~~aG--I-----PVP~g~~~~~~-~~a~~~~~~~~g~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~ 545 (737)
T TIGR01435 474 ENKVVTKKVLAEAG--F-----RVPFGDEFSSQ-ALALEAFSLFENKAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNI 545 (737)
T ss_pred cCHHHHHHHHHHcC--c-----CCCCEEEECCH-HHHHHHHHHhcCCCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHH
Confidence 36666555554432 1 25666655432 222333332223457889999999999999876 44442
Q ss_pred --cccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 165 --GIYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 165 --~~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
.....+|||+||+ | -|+|+.|+
T Consensus 546 A~~~~~~VLVEefI~------G--~EyRv~VI 569 (737)
T TIGR01435 546 AFSEDSSVIIEEFLP------G--TEYRFFVL 569 (737)
T ss_pred HHhcCCeEEEEeccc------C--CEEEEEEE
Confidence 1245699999996 4 58999887
No 58
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.10 E-value=4.4e-05 Score=85.02 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=50.4
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc--------cCcceeeeccccccccCCcee
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI--------YTESVSQLYMSNLLLMDGFKF 187 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~--------~~~~IvQ~YI~~PlLi~grKF 187 (395)
.|+++.+. +..++...... -+-.+|+||..|+.|+|++++++.+++... ...++||+||+ |.-|
T Consensus 122 ~P~~~~v~-~~~e~~~~~~~-~~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~~~~~~~~lvEEfI~------G~E~ 193 (887)
T PRK02186 122 VPRTHALA-LRAVALDALDG-LTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTRAALVQAYVE------GDEY 193 (887)
T ss_pred CCCEEEeC-CHHHHHHHHHh-CCCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCcEEEeeccc------CCcE
Confidence 58887765 23444443333 244689999999999999999998887321 35699999997 6677
Q ss_pred eeEEEEE
Q psy9480 188 DLRVYVL 194 (395)
Q Consensus 188 DlRvyvl 194 (395)
.+.+++.
T Consensus 194 sVe~i~~ 200 (887)
T PRK02186 194 SVETLTV 200 (887)
T ss_pred EEEEEEE
Confidence 7776543
No 59
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.09 E-value=0.00014 Score=75.36 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=49.2
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI----- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~----- 166 (395)
+..|..+.+.+.+.. .+..|-+.....+.++..+..++- +-.+|+||..|+.|+|+.++++.+++...
T Consensus 112 ~~DK~~~r~~l~~~G------Ip~pp~~~~~~~~~~e~~~~~~~i-gyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~ 184 (472)
T PRK07178 112 MGDKTEARRAMIKAG------VPVTPGSEGNLADLDEALAEAERI-GYPVMLKATSGGGGRGIRRCNSREELEQNFPRVI 184 (472)
T ss_pred hcCHHHHHHHHHHCC------CCCCCCcCcCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHH
Confidence 456776666554321 122232222223444444444332 45689999999999999999999887421
Q ss_pred --------cCcceeeecccc
Q psy9480 167 --------YTESVSQLYMSN 178 (395)
Q Consensus 167 --------~~~~IvQ~YI~~ 178 (395)
...+++|+||+.
T Consensus 185 ~~~~~~~~~~~v~iE~~i~~ 204 (472)
T PRK07178 185 SEATKAFGSAEVFLEKCIVN 204 (472)
T ss_pred HHHHHhcCCCCEEEEEcCCC
Confidence 235788999864
No 60
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.09 E-value=0.00014 Score=77.19 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 272 TKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 272 ~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
+.+.++++++..+++.++ +|...+.+||++++++++|++|||..|+..
T Consensus 246 ~~~~~~~~~~A~~~~~aL---------------------g~~Gv~~vEffv~~dG~v~v~EInpRpg~s 293 (577)
T PLN02948 246 WKVAKLATDVAEKAVGSL---------------------EGAGVFGVELFLLKDGQILLNEVAPRPHNS 293 (577)
T ss_pred HHHHHHHHHHHHHHHHHh---------------------CCCeEEEEEEEEcCCCcEEEEEEeCCCCCC
Confidence 455667777777766554 477899999999999999999999999854
No 61
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.09 E-value=5.9e-05 Score=82.07 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=54.6
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCC---hHHHh-----
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNT---LEEAR----- 164 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~---~~~i~----- 164 (395)
.+|....+.|.+..- =+|++..+. +.++....+....+-..|+||..|+.|+||.++.+ .+++.
T Consensus 487 ~DK~~tk~lL~~~GI-------pvP~~~~~~-~~e~a~~~~~~~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~ 558 (752)
T PRK02471 487 ENKVVTKKILAEAGF-------PVPAGDEFT-SLEEALADYSLFADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEI 558 (752)
T ss_pred hCHHHHHHHHHHCCc-------CCCCEEEEc-CHHHHHHHHHHhcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHH
Confidence 366666655543221 247766554 34444444443223468999999999999998754 44442
Q ss_pred --cccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 165 --GIYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 165 --~~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
.....++||+||. | -|+|+.|+
T Consensus 559 a~~~~~~vlVEEfI~------G--~E~Rv~Vi 582 (752)
T PRK02471 559 AFREDSSVLVEEFIV------G--TEYRFFVL 582 (752)
T ss_pred HHhcCCcEEEEeccc------C--CEEEEEEE
Confidence 1235699999995 4 48898776
No 62
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.06 E-value=0.00038 Score=71.40 Aligned_cols=75 Identities=11% Similarity=-0.072 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHH
Q psy9480 272 TKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKR 351 (395)
Q Consensus 272 ~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~ 351 (395)
+.+.+++++++..++.++.. ......+++.++||+++++ ||+||+|..++=.....+...+..
T Consensus 245 ~~~~~~i~~i~~~~~~~l~~----------------~~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~~l~~ 307 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMKD----------------ENNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVLYLLKS 307 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHh----------------cCCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhhhccc
Confidence 55667777777777766532 1123567889999997555 999999998874433333344455
Q ss_pred HHHHHHhhhccc
Q psy9480 352 TLIYDTFKILNL 363 (395)
Q Consensus 352 ~li~d~~~l~~~ 363 (395)
.+++-++.++..
T Consensus 308 d~~~~~~~~~~g 319 (435)
T PRK06395 308 DFVETLHQIYSG 319 (435)
T ss_pred CHHHHHHHHhcC
Confidence 555555555544
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.02 E-value=0.00016 Score=82.03 Aligned_cols=63 Identities=25% Similarity=0.312 Sum_probs=43.5
Q ss_pred cccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccc
Q psy9480 115 FYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSN 178 (395)
Q Consensus 115 ~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~ 178 (395)
..|.+.....+.+++.+..++- +-.+|+||..|+.|+|+.++++.+++... ...++||+||+.
T Consensus 134 v~P~~~~~v~s~eea~~~a~~i-GyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g 209 (1146)
T PRK12999 134 VIPGSEGPIDDIEEALEFAEEI-GYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN 209 (1146)
T ss_pred CCCCcccCCCCHHHHHHHHHHh-CCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 3444442334555555544432 45799999999999999999998887321 245899999974
No 64
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.00 E-value=0.00021 Score=74.60 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=50.6
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---- 166 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---- 166 (395)
.+..|..+.+.+.+.. .+..|-+.....+.++..+..++- +-.+|+||..|+.|+||.++++.+++...
T Consensus 112 ~~~DK~~~k~~l~~~G------Vpv~p~~~~~v~~~~e~~~~a~~i-gyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~ 184 (499)
T PRK08654 112 AMGSKINAKKLMKKAG------VPVLPGTEEGIEDIEEAKEIAEEI-GYPVIIKASAGGGGIGMRVVYSEEELEDAIEST 184 (499)
T ss_pred HhCCHHHHHHHHHHcC------cCCCCCcCcCCCCHHHHHHHHHHh-CCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHH
Confidence 4567776666554322 123333332122344444444332 45799999999999999999998887321
Q ss_pred ---------cCcceeeecccc
Q psy9480 167 ---------YTESVSQLYMSN 178 (395)
Q Consensus 167 ---------~~~~IvQ~YI~~ 178 (395)
...++||+||+.
T Consensus 185 ~~~a~~~f~~~~v~vE~~I~~ 205 (499)
T PRK08654 185 QSIAQSAFGDSTVFIEKYLEK 205 (499)
T ss_pred HHHHHHhCCCCeEEEEeCCCC
Confidence 245899999974
No 65
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.99 E-value=0.00012 Score=72.43 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=39.2
Q ss_pred CcEEEEcCCCCCC--CCceEeeCChHHHhcc--------------cCcceeeeccccccccCCceeeeEEEE
Q psy9480 138 HQVFISKPSRGAE--GKGIKIFNTLEEARGI--------------YTESVSQLYMSNLLLMDGFKFDLRVYV 193 (395)
Q Consensus 138 ~~~wIvKP~~gs~--G~GI~li~~~~~i~~~--------------~~~~IvQ~YI~~PlLi~grKFDlRvyv 193 (395)
+...|+||..+++ |+|++++++.+++... .+.++||+||. |..|.+=+|+
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F~ 217 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYFY 217 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEEE
Confidence 4569999999999 9999999999887421 13467999997 7777777664
No 66
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.98 E-value=0.00015 Score=72.28 Aligned_cols=144 Identities=15% Similarity=0.218 Sum_probs=85.2
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhc------------ccCcceeeeccccccccCCceeeeEEEEEEecccCceE---
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARG------------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRI--- 203 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~------------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~v--- 203 (395)
...|+||..|+.|+|++++.+.+++.. ..+.++||+||. |..|.+-+++-.- .+-+.+
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~------G~e~sv~~f~s~~-~~~~e~l~i 222 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV------GVPYYFHYFYSPI-KNRLELLGI 222 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC------CcEEEEEEEEecc-CCeEEEEee
Confidence 468999999999999999999887632 135699999997 7777666554200 011111
Q ss_pred ---EEE-cceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHH
Q psy9480 204 ---FVY-NNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDID 279 (395)
Q Consensus 204 ---y~~-~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~ 279 (395)
|.. .+|+.|+....+.. .+.. +.|.- .|+ ++. .-.+.+.+++.
T Consensus 223 d~r~~~~~d~~~r~p~~~~~~---~~~~---------------p~~v~---~Gn-~P~-----------~~resll~~v~ 269 (358)
T PRK13278 223 DRRYESNIDGLVRIPAKDQLE---LGID---------------PTYVV---VGN-IPV-----------VLRESLLPQVF 269 (358)
T ss_pred ceeeeecccceeeccchhhhh---cccC---------------CceeE---ecc-eec-----------cchHhHHHHHH
Confidence 112 34555544433211 0000 00110 121 111 01145566666
Q ss_pred HHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCC
Q psy9480 280 DIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSP 337 (395)
Q Consensus 280 ~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P 337 (395)
+.+.+.+.++...+ + .+...-+.+|+++++++++|++|||..+
T Consensus 270 ~~~~~~v~a~~~~~--------~-------~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 270 EYGERFVETSKELV--------P-------PGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred HHHHHHHHHHHHhc--------C-------ccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 66666666553322 1 1355678899999999999999999888
No 67
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.94 E-value=0.00027 Score=80.21 Aligned_cols=85 Identities=16% Similarity=0.183 Sum_probs=55.3
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG------- 165 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~------- 165 (395)
.+|..+.+.+.+.. -=.|+++.+. ..++..+..+. -+-.+|+||..++.|+|+.++.+.+++..
T Consensus 668 ~DK~~~~~~L~~~G-------Ip~P~~~~~~-s~ee~~~~~~~-igyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~ 738 (1066)
T PRK05294 668 EDRERFSKLLEKLG-------IPQPPNGTAT-SVEEALEVAEE-IGYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVK 738 (1066)
T ss_pred CCHHHHHHHHHHcC-------cCCCCeEEEC-CHHHHHHHHHh-cCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHh
Confidence 45555555443321 1257777664 34444443333 24579999999999999999999888732
Q ss_pred --ccCcceeeeccccccccCCc-eeeeEEE
Q psy9480 166 --IYTESVSQLYMSNLLLMDGF-KFDLRVY 192 (395)
Q Consensus 166 --~~~~~IvQ~YI~~PlLi~gr-KFDlRvy 192 (395)
...+++||+||+ |. -+++.++
T Consensus 739 ~s~~~~vlIEefI~------G~~E~sV~~v 762 (1066)
T PRK05294 739 VSPDHPVLIDKFLE------GAIEVDVDAI 762 (1066)
T ss_pred hCCCCcEEEEecCC------CCEEEEEEEE
Confidence 134699999997 54 6676653
No 68
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.93 E-value=0.00029 Score=79.77 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=50.5
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc---------ccCcceeeeccccccccCCce
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG---------IYTESVSQLYMSNLLLMDGFK 186 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---------~~~~~IvQ~YI~~PlLi~grK 186 (395)
.|+++.+. +.++..+..++- +-.+|+||..+..|+|+.++.+.+++.. ...+++||+||+. |+.
T Consensus 684 ~P~~~~v~-s~ee~~~~~~~i-gyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~-----G~E 756 (1050)
T TIGR01369 684 QPKWKTAT-SVEEAVEFASEI-GYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED-----AVE 756 (1050)
T ss_pred CCCeEEEC-CHHHHHHHHHhc-CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC-----CeE
Confidence 57777664 344444444332 4568999999999999999999888732 1345999999973 677
Q ss_pred eeeEEEE
Q psy9480 187 FDLRVYV 193 (395)
Q Consensus 187 FDlRvyv 193 (395)
+++.+++
T Consensus 757 ~~Vd~l~ 763 (1050)
T TIGR01369 757 VDVDAVS 763 (1050)
T ss_pred EEEEEEE
Confidence 7776543
No 69
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=97.88 E-value=0.00029 Score=69.35 Aligned_cols=78 Identities=18% Similarity=0.344 Sum_probs=55.9
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHc--CCCcEEEEcCCCCCCCCceEeeC-ChHHHh---c
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVRE--HPHQVFISKPSRGAEGKGIKIFN-TLEEAR---G 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~--~~~~~wIvKP~~gs~G~GI~li~-~~~~i~---~ 165 (395)
+-.|..++..+++. . --+|+++... ..++|.+.+.+ .++...++||..|..|+|.++++ +.+++. .
T Consensus 105 ~~dK~~~y~~~~~~-----~--ipvp~~~~v~-t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~ 176 (329)
T PF15632_consen 105 ADDKAAFYEFMEAN-----G--IPVPPYWRVR-TADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFE 176 (329)
T ss_pred HhhHHHHHHHHHhC-----C--CCCCCEEEeC-CHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcC
Confidence 45677777766541 1 2578888765 68888888876 45677999999999999999998 343331 1
Q ss_pred -------------------ccCcceeeeccc
Q psy9480 166 -------------------IYTESVSQLYMS 177 (395)
Q Consensus 166 -------------------~~~~~IvQ~YI~ 177 (395)
...++||++|++
T Consensus 177 ~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~ 207 (329)
T PF15632_consen 177 PDSRRISLDELLAALQRSEEFPPLLVMEYLP 207 (329)
T ss_pred CCcceeCHHHHHHHHhccCCCCCcEEecCCC
Confidence 134699999997
No 70
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.86 E-value=0.00044 Score=71.82 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHH
Q psy9480 272 TKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKR 351 (395)
Q Consensus 272 ~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~ 351 (395)
+...+++.+++..++.++...+ .......+-.+||++++..|+|||+|...+=.....+...+..
T Consensus 260 ~~~~~~~~~~v~~~l~al~~~~---------------g~~~~G~l~~elmlt~~~GP~vIE~n~R~Gdpe~~~llp~l~~ 324 (486)
T PRK05784 260 EEEYEEAVEIVKRTIDAIYKET---------------GERYVGVISGQMMLTELWGPTVIEYYSRFGDPEASNIIPRIES 324 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---------------CCCcEEEEEEEEEEecCCCcEEEEEecccCCchHHHHHHhccC
Confidence 3445555667777666654311 1123477889999983344999999998884333344444555
Q ss_pred HHHHHHhhhccc
Q psy9480 352 TLIYDTFKILNL 363 (395)
Q Consensus 352 ~li~d~~~l~~~ 363 (395)
.+++-++.++..
T Consensus 325 dl~~~~~~~~~g 336 (486)
T PRK05784 325 DFGELFELAATG 336 (486)
T ss_pred CHHHHHHHHHcC
Confidence 555555555433
No 71
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=97.77 E-value=0.0006 Score=66.37 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=52.5
Q ss_pred CCcccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHc-CCCcEEEEcCCC--CC-CCCceEeeCChHHHh
Q psy9480 89 MANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVRE-HPHQVFISKPSR--GA-EGKGIKIFNTLEEAR 164 (395)
Q Consensus 89 ~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~-~~~~~wIvKP~~--gs-~G~GI~li~~~~~i~ 164 (395)
...|.+...+.+.+...........=..|..-.+..+.++..+.+.+ +-.-..|+||.. |+ ....+.++-+.+.+.
T Consensus 88 i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~ 167 (307)
T PF05770_consen 88 IRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEEGLK 167 (307)
T ss_dssp HHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGT
T ss_pred HHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHHHHh
Confidence 33444444555555544322222223567766666444445555544 334579999984 33 556778888888886
Q ss_pred cccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 165 GIYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 165 ~~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
...-+.|+|+||.+- |. =+.+||+
T Consensus 168 ~L~~P~VlQeFVNHg----gv--LfKVyVv 191 (307)
T PF05770_consen 168 DLKPPCVLQEFVNHG----GV--LFKVYVV 191 (307)
T ss_dssp T--SSEEEEE----T----TE--EEEEEEE
T ss_pred hcCCCEEEEEeecCC----CE--EEEEEEe
Confidence 666789999999853 32 2456766
No 72
>PLN02735 carbamoyl-phosphate synthase
Probab=97.75 E-value=0.00073 Score=76.71 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=40.8
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc---------cCcceeeeccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---------YTESVSQLYMS 177 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---------~~~~IvQ~YI~ 177 (395)
.|+++.+. +.++.....++-..-..|+||..++.|+|+.++.+.+++... ..+++||+||.
T Consensus 159 vp~~~~v~-s~eea~~~~~~iG~yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~ 228 (1102)
T PLN02735 159 TPPSGIAT-TLDECFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL 228 (1102)
T ss_pred CCCeeEeC-CHHHHHHHHHHhCCCCEEEEeCCCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 45566554 233333333332214689999999999999999999887421 24589999996
No 73
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=97.75 E-value=0.0012 Score=60.02 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=37.3
Q ss_pred hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------------ccCcceeeeccc
Q psy9480 125 QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------------IYTESVSQLYMS 177 (395)
Q Consensus 125 ~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------------~~~~~IvQ~YI~ 177 (395)
+.++-.+++++.....+++||...+.|+|+.++.+.++... .....||++|++
T Consensus 25 ~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~ 90 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLE 90 (194)
T ss_dssp SHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---
T ss_pred CHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccC
Confidence 56666666666445557999999999999999999876421 235689999997
No 74
>PLN02735 carbamoyl-phosphate synthase
Probab=97.73 E-value=0.00055 Score=77.71 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=44.7
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc---------ccCcceeeeccccccccCCce
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG---------IYTESVSQLYMSNLLLMDGFK 186 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---------~~~~~IvQ~YI~~PlLi~grK 186 (395)
.|++..+. +.++..+..++ -+-..|+||..+..|+|+.++.+.+++.. ...+++||+||+. |+.
T Consensus 717 ~p~~~~v~-s~eea~~~a~~-iGyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-----g~E 789 (1102)
T PLN02735 717 QPKGGIAR-SEADALAIAKR-IGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-----ATE 789 (1102)
T ss_pred CCCeeEeC-CHHHHHHHHHh-cCCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-----cEE
Confidence 34444443 33444333332 23468999999999999999999888732 1235899999963 455
Q ss_pred eeeEE
Q psy9480 187 FDLRV 191 (395)
Q Consensus 187 FDlRv 191 (395)
+++=+
T Consensus 790 i~V~v 794 (1102)
T PLN02735 790 IDVDA 794 (1102)
T ss_pred EEEEE
Confidence 55543
No 75
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.73 E-value=0.00089 Score=76.03 Aligned_cols=68 Identities=9% Similarity=0.212 Sum_probs=47.8
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceee
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFD 188 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFD 188 (395)
.|+++.+. ..++..+.... -+-.+|+||..+..|+|+.++.+.+++.. ...+++||+||+ |..++
T Consensus 685 ~P~~~~~~-s~ee~~~~~~~-igyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI~------G~E~~ 756 (1068)
T PRK12815 685 HVPGLTAT-DEEEAFAFAKR-IGYPVLIRPSYVIGGQGMAVVYDEPALEAYLAENASQLYPILIDQFID------GKEYE 756 (1068)
T ss_pred CCCeEEeC-CHHHHHHHHHh-cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHhhcCCCCEEEEEeec------CceEE
Confidence 56666554 34444444333 24579999999999999999999887732 235699999995 66666
Q ss_pred eEE
Q psy9480 189 LRV 191 (395)
Q Consensus 189 lRv 191 (395)
+-+
T Consensus 757 Vd~ 759 (1068)
T PRK12815 757 VDA 759 (1068)
T ss_pred EEE
Confidence 554
No 76
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.66 E-value=0.00061 Score=77.38 Aligned_cols=60 Identities=28% Similarity=0.191 Sum_probs=42.6
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc---------cCcceeeeccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---------YTESVSQLYMS 177 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---------~~~~IvQ~YI~ 177 (395)
+|+++.+. +.+++.+..++- +-..|+||..|..|+|+.++++.+++... ...++||+||+
T Consensus 143 vp~~~~v~-s~~e~~~~~~~i-g~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~ 211 (1066)
T PRK05294 143 VPRSGIAH-SMEEALEVAEEI-GYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL 211 (1066)
T ss_pred CCCeeeeC-CHHHHHHHHHHc-CCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc
Confidence 57777664 334444433332 34689999999999999999998887321 24689999996
No 77
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.55 E-value=0.0014 Score=74.37 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=41.9
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc---------cCcceeeeccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---------YTESVSQLYMS 177 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---------~~~~IvQ~YI~ 177 (395)
+|++..+. +.++..+..++- +-..|+||..|..|+|+.++++.+++... ...++||+||.
T Consensus 142 vp~~~~v~-s~~e~~~~~~~i-gyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~ 210 (1050)
T TIGR01369 142 VPESEIAH-SVEEALAAAKEI-GYPVIVRPAFTLGGTGGGIAYNREELKEIAERALSASPINQVLVEKSLA 210 (1050)
T ss_pred CCCeeecC-CHHHHHHHHHHh-CCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc
Confidence 46666554 344444433332 34689999999999999999998887321 14689999996
No 78
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=97.51 E-value=0.0039 Score=63.85 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=47.2
Q ss_pred CcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccc
Q psy9480 114 DFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNL 179 (395)
Q Consensus 114 ~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~P 179 (395)
+.+|-+.-...+.+++.+..++-+ -..|+||+.|+.|+||+++++.+++... ...+++++||++|
T Consensus 129 P~vpgs~~~~~~~ee~~~~a~~iG-yPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~ 206 (449)
T COG0439 129 PVVPGSDGAVADNEEALAIAEEIG-YPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP 206 (449)
T ss_pred CcCCCCCCCcCCHHHHHHHHHHcC-CCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC
Confidence 455555333335567777666633 5789999999999999999999887321 2349999999987
No 79
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.49 E-value=0.0061 Score=69.86 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=42.4
Q ss_pred cccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccc
Q psy9480 115 FYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSN 178 (395)
Q Consensus 115 ~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~ 178 (395)
..|.++.+. +.++......+ -+-.+|+||..|+.|+|+.++++.+++... ...++||+||+.
T Consensus 129 t~p~~~lv~-s~dea~~~a~~-igyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g 203 (1201)
T TIGR02712 129 LLPGTGLLS-SLDEALEAAKE-IGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVEN 203 (1201)
T ss_pred CCCceeecC-CHHHHHHHHHh-cCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 345455443 44444444433 245799999999999999999998887311 235899999973
No 80
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.26 E-value=0.0032 Score=71.55 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=42.4
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc---------cCcceeeeccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---------YTESVSQLYMS 177 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---------~~~~IvQ~YI~ 177 (395)
+|+++.+. +.++..+..++- +-..|+||..+..|+|+.++++.+++... ..+++||+||.
T Consensus 143 vp~~~~v~-s~ee~~~~~~~i-gyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~ 211 (1068)
T PRK12815 143 VPESEIVT-SVEEALAFAEKI-GFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQASPIHQCLLEESIA 211 (1068)
T ss_pred CCCceeeC-CHHHHHHHHHHc-CCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC
Confidence 57777664 344444433332 34689999999999999999998887321 24689999996
No 81
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=97.18 E-value=0.032 Score=49.96 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=77.1
Q ss_pred CcEEEEc-CCCCCCCCceEeeCChHHHhc-----ccCcceeeeccccccccCCceeeeEEEEEEeccc-----CceEEEE
Q psy9480 138 HQVFISK-PSRGAEGKGIKIFNTLEEARG-----IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCID-----PLRIFVY 206 (395)
Q Consensus 138 ~~~wIvK-P~~gs~G~GI~li~~~~~i~~-----~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~-----pl~vy~~ 206 (395)
+-..|+| +..|.-|+|..++++.+++.. ...++|++++|+ + ...+-+.+.....+ |+.--+|
T Consensus 28 G~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~--f-----~~EiSvivaR~~~G~~~~yp~~en~~ 100 (172)
T PF02222_consen 28 GFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVP--F-----DREISVIVARDQDGEIRFYPPVENVH 100 (172)
T ss_dssp TSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE-----E-----SEEEEEEEEEETTSEEEEEEEEEEEE
T ss_pred CCCEEEEccCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccC--C-----cEEEEEEEEEcCCCCEEEEcCceEEE
Confidence 4578999 778999999999999988742 246799999995 2 22232333222211 1222234
Q ss_pred cceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q psy9480 207 NNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTI 286 (395)
Q Consensus 207 ~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~ 286 (395)
++|..+.+..+-.. .+.+..+++++..+.+
T Consensus 101 ~~~il~~s~~Pa~i--------------------------------------------------~~~~~~~a~~ia~~i~ 130 (172)
T PF02222_consen 101 RDGILHESIAPARI--------------------------------------------------SDEVEEEAKEIARKIA 130 (172)
T ss_dssp ETTEEEEEEESCSS---------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCCCC--------------------------------------------------CHHHHHHHHHHHHHHH
Confidence 44444444332211 1345666777776666
Q ss_pred HHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCc-eEEEEeeCCCCCC
Q psy9480 287 ISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMK-PFLLEVNRSPSFN 340 (395)
Q Consensus 287 ~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~k-pwLLEVN~~P~l~ 340 (395)
.++ +..++|++.|.++++|+ +|+-||-..|--+
T Consensus 131 ~~l---------------------~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnS 164 (172)
T PF02222_consen 131 EAL---------------------DYVGVLAVEFFVTKDGDEVLVNEIAPRPHNS 164 (172)
T ss_dssp HHH---------------------TSSEEEEEEEEEETTSTEEEEEEEESS--GG
T ss_pred HHc---------------------CcEEEEEEEEEEecCCCEEEEEeccCCccCc
Confidence 554 46799999999999998 9999998877543
No 82
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=97.07 E-value=0.024 Score=52.42 Aligned_cols=175 Identities=17% Similarity=0.132 Sum_probs=90.8
Q ss_pred CcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------------ccCcceeeecccccc
Q psy9480 114 DFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------------IYTESVSQLYMSNLL 180 (395)
Q Consensus 114 ~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------------~~~~~IvQ~YI~~Pl 180 (395)
+.+|-+-....+.++-.+..++- +-..++||+.|..|+|+.++.+.+++.. ...+.+|.+||+++
T Consensus 15 p~~pg~~~~~~~~eea~~~a~~i-GyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~- 92 (211)
T PF02786_consen 15 PVPPGSTVPISSVEEALEFAEEI-GYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA- 92 (211)
T ss_dssp BBSSBESSSBSSHHHHHHHHHHH--SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE-
T ss_pred CcCCCCCCCCCCHHHHHHHHHhc-CCceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh-
Confidence 44454443223455544444432 3458899999999999999999988732 14568999999854
Q ss_pred ccCCceeeeEEEEEEecccC-ceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHH
Q psy9480 181 LMDGFKFDLRVYVLITCIDP-LRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTA 259 (395)
Q Consensus 181 Li~grKFDlRvyvlvts~~p-l~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~ 259 (395)
|.++ +-++-.+.+- +-++ .|=|+.+-.. .+... ..-..+
T Consensus 93 ----reiE--vqvi~D~~gn~~~~~------~~e~~~~~hs------~dsi~-------------------~~P~~~--- 132 (211)
T PF02786_consen 93 ----REIE--VQVIRDGKGNVVHLG------ERECSEQRHS------QDSIE-------------------EAPAQT--- 132 (211)
T ss_dssp ----EEEE--EEEEEETTSEEEEEE------EEEEEEEETT------EEEEE-------------------EES-SS---
T ss_pred ----hhhh--hhhhhccccceeeee------eecccccccc------cccee-------------------Eeeccc---
Confidence 2222 3333333221 1111 1112111100 00000 000001
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecC-CCceEEEEeeCCCC
Q psy9480 260 LNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDS-TMKPFLLEVNRSPS 338 (395)
Q Consensus 260 l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~-~~kpwLLEVN~~P~ 338 (395)
. .+.+.++|+++..+...++ +.-...-+-|++|. +++.|+||||..-+
T Consensus 133 ---------L-~~~~~~~l~~~a~~ia~~l---------------------~~~G~~tvef~~~~~~~~~y~lEvNpR~~ 181 (211)
T PF02786_consen 133 ---------L-SDEERQKLREAAKKIARAL---------------------GYVGAGTVEFAVDPDDGEFYFLEVNPRLQ 181 (211)
T ss_dssp ---------S--HHHHHHHHHHHHHHHHHT---------------------T-EEEEEEEEEEETTTTEEEEEEEESS--
T ss_pred ---------c-chHHHHHHHHHHHHHHHhh---------------------CeeecceEEEEEccCccceeeecccCCCC
Confidence 1 1445666776666555443 46677788999997 99999999997554
Q ss_pred CCCCCcchH-HHHHHHHHHHhhhccc
Q psy9480 339 FNIAGIVDE-RVKRTLIYDTFKILNL 363 (395)
Q Consensus 339 l~~~~~~d~-~vk~~li~d~~~l~~~ 363 (395)
-+ .++.. ..-..|+.-.++++..
T Consensus 182 ~~--~p~~e~~tg~dlv~~~~~ia~G 205 (211)
T PF02786_consen 182 RE--HPVTEKVTGYDLVRVQIRIALG 205 (211)
T ss_dssp TT--HHHHHHHHT--HHHHHHHHHTT
T ss_pred Cc--chHHHHHHCCCHHHHHHHHHCC
Confidence 44 44432 3345666666666543
No 83
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=96.82 E-value=0.014 Score=62.55 Aligned_cols=93 Identities=17% Similarity=0.211 Sum_probs=66.1
Q ss_pred CCCCcccchHHHHHHHHHHHhhC--C--------------------CCCCcccCeeeccchHHHHHHHHHcCCCcEEEEc
Q psy9480 87 PGMANLESKAFLAYHLNRMRNHF--P--------------------EDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISK 144 (395)
Q Consensus 87 p~~~~l~~K~~L~~~l~~~~~~~--~--------------------~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvK 144 (395)
||-..|+--..+++...+.--.| | -..+.+|-|=-.+++.++..++.+..+ -..++|
T Consensus 86 PGYGfLSEn~efA~~c~eaGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~g-yPvmiK 164 (1149)
T COG1038 86 PGYGFLSENPEFARACAEAGITFIGPKPEVLDMLGDKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYG-YPVMIK 164 (1149)
T ss_pred CCcccccCCHHHHHHHHHcCCEEeCCCHHHHHHhccHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcC-CcEEEE
Confidence 77777777777766554321111 0 124788888888777888777776643 356779
Q ss_pred CCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccccc
Q psy9480 145 PSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLL 180 (395)
Q Consensus 145 P~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~Pl 180 (395)
-+.|..|||+.++++.+++... .....|.+||+||-
T Consensus 165 A~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve~pk 213 (1149)
T COG1038 165 AAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVENPK 213 (1149)
T ss_pred EccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhcCcc
Confidence 9999999999999998887321 34588999999883
No 84
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.64 E-value=0.0081 Score=61.35 Aligned_cols=173 Identities=19% Similarity=0.239 Sum_probs=95.6
Q ss_pred CcHHHHHHHHHhCCCEEec-CCC-------------CCeEEEEcccCCChhhhhcC------------CccceecccCCC
Q psy9480 36 CMYKIVEDVATLMGMGIVR-DDE-------------EPWDVYWSDFSVSTVMSKSM------------EVYHRINHFPGM 89 (395)
Q Consensus 36 ~~~~~v~~~~~~~g~~~~~-~~~-------------~~~~i~W~~~~~~~~~~~~l------------~~~q~vNh~p~~ 89 (395)
.++++.++.|++.|+.-+- +.. ...|++|.-. +..+.+... ..-..||.|- .
T Consensus 200 ~Ef~~f~~~f~~~G~~~vI~d~~~L~y~~g~L~~~~~~ID~VyRR~-Vt~e~l~~~d~~~~li~Ay~~~av~~vgsfr-s 277 (445)
T PF14403_consen 200 SEFEVFQRLFEEHGYDCVICDPRDLEYRDGRLYAGGRPIDAVYRRF-VTSELLERYDEVQPLIQAYRDGAVCMVGSFR-S 277 (445)
T ss_pred chHHHHHHHHHHcCCceEecChHHceecCCEEEECCEeeehhhHhh-hhHHhhhccccchHHHHHHhcCCeEEecchh-h
Confidence 4578999999999996432 211 1355555542 122111111 1123566663 2
Q ss_pred CcccchHHHHHHHHH-HHhh-CC-C----CCCcccCeeeccc-------hHHHHHHHHHcCCCcEEEEcCCCCCCCCceE
Q psy9480 90 ANLESKAFLAYHLNR-MRNH-FP-E----DYDFYPRSWSLPY-------QQEDFLSYVREHPHQVFISKPSRGAEGKGIK 155 (395)
Q Consensus 90 ~~l~~K~~L~~~l~~-~~~~-~~-~----~~~~~P~T~~Lp~-------~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~ 155 (395)
+.+.+|.-+ ..|.. .... .+ + ...++|-|..+.. +..++.++...+ ..-||+||..+..|+||.
T Consensus 278 ~l~hnK~iF-aiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~-r~~lVLKP~D~Ygg~GV~ 355 (445)
T PF14403_consen 278 QLLHNKIIF-AILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIAN-RDRLVLKPNDEYGGKGVY 355 (445)
T ss_pred hhhhhhHHH-HHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhc-hhcEEeccccccCCCCeE
Confidence 334444444 33332 2111 11 1 2368999999976 334555544443 568999999999999999
Q ss_pred eeCChHH-----Hh--cccCcceeeecccccccc-----CCceeeeEEEEEEecccCceEEEEc----ceEEEeccCCC
Q psy9480 156 IFNTLEE-----AR--GIYTESVSQLYMSNLLLM-----DGFKFDLRVYVLITCIDPLRIFVYN----NGLVRLATCQY 218 (395)
Q Consensus 156 li~~~~~-----i~--~~~~~~IvQ~YI~~PlLi-----~grKFDlRvyvlvts~~pl~vy~~~----~g~vR~a~~~y 218 (395)
+=...++ +. ...++||+|+|+.-+-+- +|. +.+.-+.. +.+| |+|. +++.|+++.+-
T Consensus 356 ~G~e~~~eeW~~~l~~a~~~~yilQe~v~~~~~~~~~~~dg~-~~~~~~~~--~~g~---fly~~~~~G~~tR~g~~~v 428 (445)
T PF14403_consen 356 IGWETSPEEWEAALEEAAREPYILQEYVRPPREPMPAFEDGE-VVFEEYPY--DSGP---FLYGGKFAGCYTRLGTGNV 428 (445)
T ss_pred ECCcCCHHHHHHHHHHHhcCCcEEEEEecCCccccccccCCc-eeEeeeee--eccc---eeECCEEEEEEEEeccCCc
Confidence 8655322 11 135689999999854331 343 22222222 1234 7776 67778875433
No 85
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=96.61 E-value=0.0056 Score=59.32 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=31.3
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhcccCcceeeeccccccccCCceeeeEE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRV 191 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~~~~~~IvQ~YI~~PlLi~grKFDlRv 191 (395)
....|+||..|+.|- +.++.--+++ . ...+|.|+||+ |+.+..-+
T Consensus 149 ekt~IlKPv~GaGG~-~el~~~~Ee~-~-~~~~i~Qefi~------G~p~Svs~ 193 (389)
T COG2232 149 EKTLILKPVSGAGGL-VELVKFDEED-P-PPGFIFQEFIE------GRPVSVSF 193 (389)
T ss_pred ceeeEEeeccCCCce-eeeccccccc-C-CcceehhhhcC------CceeEEEE
Confidence 467999999988885 4443333333 1 37799999998 77776543
No 86
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.50 E-value=0.046 Score=56.61 Aligned_cols=180 Identities=13% Similarity=0.168 Sum_probs=102.2
Q ss_pred CCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccc
Q psy9480 113 YDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNL 179 (395)
Q Consensus 113 ~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~P 179 (395)
.+.+|=+--.-.+..++.....+-+ -..++|.+.|..|||++++.+.+++... ....+|.||+++|
T Consensus 128 Vp~VPG~~g~~qd~~~~~~~A~eiG-yPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~P 206 (645)
T COG4770 128 VPTVPGYHGPIQDAAELVAIAEEIG-YPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKP 206 (645)
T ss_pred CCccCCCCCcccCHHHHHHHHHhcC-CcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCC
Confidence 3566665554455566666555543 3566699999999999999999887321 3569999999988
Q ss_pred cccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHH
Q psy9480 180 LLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTA 259 (395)
Q Consensus 180 lLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~ 259 (395)
- +|=+-|+-...+. .+|++.. -.|+|..++.....-. +
T Consensus 207 R-------HIEiQV~aD~HGN-vv~LgER--------------------------dCSlQRRhQKVIEEAP--a------ 244 (645)
T COG4770 207 R-------HIEIQVFADQHGN-VVHLGER--------------------------DCSLQRRHQKVIEEAP--A------ 244 (645)
T ss_pred c-------eEEEEEEecCCCC-EEEeecc--------------------------ccchhhhcchhhhcCC--C------
Confidence 3 3333333222111 1222210 1234444333221000 0
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCC
Q psy9480 260 LNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSF 339 (395)
Q Consensus 260 l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l 339 (395)
-+. .+.+.+.|.+..++..+++ +...-=-+.|++|.++..|+||+|+. |
T Consensus 245 -------P~l-~~~~R~amg~aAv~~a~av---------------------gY~gAGTVEFivd~~~~f~FlEMNTR--L 293 (645)
T COG4770 245 -------PFL-TEETREAMGEAAVAAAKAV---------------------GYVGAGTVEFIVDADGNFYFLEMNTR--L 293 (645)
T ss_pred -------CCC-CHHHHHHHHHHHHHHHHhc---------------------CCCcCceEEEEEcCCCcEEEEEeecc--e
Confidence 011 1445555655555544443 11111135688999999999999995 3
Q ss_pred CCCCcchHHHH-HHHHHHHhhhcccccc
Q psy9480 340 NIAGIVDERVK-RTLIYDTFKILNLNQN 366 (395)
Q Consensus 340 ~~~~~~d~~vk-~~li~d~~~l~~~~~~ 366 (395)
....++.+.+. -.|++..|+++...+.
T Consensus 294 QVEHPVTE~iTGiDLVewqiRVA~GekL 321 (645)
T COG4770 294 QVEHPVTELITGIDLVEWQIRVASGEKL 321 (645)
T ss_pred eccccchhhhhhhHHHHHHHHHhcCCcC
Confidence 33345544333 4678888888866544
No 87
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=96.41 E-value=0.029 Score=50.68 Aligned_cols=91 Identities=18% Similarity=0.376 Sum_probs=52.2
Q ss_pred cccchHHHHHHHHHHHhh-CCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc----
Q psy9480 91 NLESKAFLAYHLNRMRNH-FPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG---- 165 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~-~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---- 165 (395)
.++.|--+...|.+.+++ .++.++.++.||. |. ..++. ..+.-..++|=..+.+|-|-..+++..++..
T Consensus 8 nf~dKpWvF~qLi~i~~~lG~e~FPLieQt~y-pn-h~em~----s~~~fPvVvKvG~~h~G~GKvkv~n~~~~qDi~sl 81 (203)
T PF02750_consen 8 NFCDKPWVFAQLIKIQKRLGPEKFPLIEQTYY-PN-HREML----SAPRFPVVVKVGHAHAGMGKVKVDNQQDFQDIASL 81 (203)
T ss_dssp HTTSHHHHHHHHHHHHHHHHTTTS-B---EEE-SS-GGGGC----S-SSSSEEEEESS-STTTTEEEE-SHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHhCCcccccceeeec-CC-hhhhc----cCCCCCEEEEEccccCceeEEEEccHHHHHHHHHH
Confidence 455666555555555544 4678899999995 42 22222 2345689999999999999999999877632
Q ss_pred --ccCcce-eeeccccccccCCceeeeEEEEE
Q psy9480 166 --IYTESV-SQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 166 --~~~~~I-vQ~YI~~PlLi~grKFDlRvyvl 194 (395)
..+.|+ +..|| ..|+|||+--+
T Consensus 82 l~~~~~Y~T~EPfI-------d~kyDirvqkI 106 (203)
T PF02750_consen 82 LAITKDYATTEPFI-------DAKYDIRVQKI 106 (203)
T ss_dssp HHHHTS-EEEEE----------EEEEEEEEEE
T ss_pred HHhcCceEEeeccc-------cceeEEEEEEE
Confidence 233433 23333 57999998554
No 88
>KOG0369|consensus
Probab=96.09 E-value=0.031 Score=58.76 Aligned_cols=96 Identities=16% Similarity=0.253 Sum_probs=64.5
Q ss_pred ceeccc-CCCCcccchHHHHHHHHHHHhhC--C--------------------CCCCcccCeeecc---chHHHHHHHHH
Q psy9480 81 HRINHF-PGMANLESKAFLAYHLNRMRNHF--P--------------------EDYDFYPRSWSLP---YQQEDFLSYVR 134 (395)
Q Consensus 81 q~vNh~-p~~~~l~~K~~L~~~l~~~~~~~--~--------------------~~~~~~P~T~~Lp---~~~~~f~~~~~ 134 (395)
..++-+ ||-..|+-...+++..+...-.+ | .-.+.+|-|=-=- .+..+|.+.+
T Consensus 105 ~~vdavHPGYGFLSErsdFA~av~~AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~y- 183 (1176)
T KOG0369|consen 105 HNVDAVHPGYGFLSERSDFAQAVQDAGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEY- 183 (1176)
T ss_pred cCCCeecCCccccccchHHHHHHHhcCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhc-
Confidence 345544 89999999999988877543222 1 1134555542211 2344455544
Q ss_pred cCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccccc
Q psy9480 135 EHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLL 180 (395)
Q Consensus 135 ~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~Pl 180 (395)
+-..|+|-..|..|+|+.++++.+++... .....|.++|++|-
T Consensus 184 ---G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPr 239 (1176)
T KOG0369|consen 184 ---GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPR 239 (1176)
T ss_pred ---CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcc
Confidence 45789999999999999999999887321 35689999999873
No 89
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.32 Score=49.05 Aligned_cols=174 Identities=16% Similarity=0.205 Sum_probs=98.8
Q ss_pred hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccccccCCceeeeEE
Q psy9480 125 QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLLMDGFKFDLRV 191 (395)
Q Consensus 125 ~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlLi~grKFDlRv 191 (395)
+.++..+++++. ...|++||...+.|+|+.+..+.++.... ....||.+|++ |-.|.+
T Consensus 126 ~~e~a~ayi~~~-g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~------GeE~S~-- 196 (428)
T COG0151 126 DPEEAKAYIDEK-GAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLD------GEEFSL-- 196 (428)
T ss_pred CHHHHHHHHHHc-CCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEeccc------ceEEEE--
Confidence 455555666553 44599999999999999999997765321 13467777775 555544
Q ss_pred EEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCC--CCCCCccChHHHHHHHHHcCC
Q psy9480 192 YVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKS--PERGSKRDFTALNSWLLSQGL 269 (395)
Q Consensus 192 yvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~--~~~g~~~~l~~l~~~l~~~g~ 269 (395)
.+++.+.+ ++ .-... |.|..-|..+ +++|-+=+++.. .+
T Consensus 197 ~a~~DG~~---v~------p~p~a-----------------------QDhKra~dgD~GPNTGGMGaysp~-------P~ 237 (428)
T COG0151 197 QAFVDGKT---VI------PMPTA-----------------------QDHKRAYDGDTGPNTGGMGAYSPA-------PF 237 (428)
T ss_pred EEEEcCCe---EE------ECccc-----------------------cccccccCCCCCCCCCCCCCCCCC-------CC
Confidence 44433322 00 00000 1111111110 112333222211 11
Q ss_pred ChhHHHHHHH-HHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHH
Q psy9480 270 NSTKLWNDID-DIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDER 348 (395)
Q Consensus 270 ~~~~l~~~i~-~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~ 348 (395)
-.+.+.+++. +|+..|+.++.. . ......+|=.-|||+.+| |.+||.|+.=+=-....+...
T Consensus 238 ~t~e~~~~~~~~Iv~ptv~gm~~---------------E-G~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~ 300 (428)
T COG0151 238 ITDEVVERAVEEIVEPTVEGMAK---------------E-GYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPL 300 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---------------c-CCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHh
Confidence 2245555554 788888777644 1 235677888899999999 999999996554444455566
Q ss_pred HHHHHHHHHhhhccc
Q psy9480 349 VKRTLIYDTFKILNL 363 (395)
Q Consensus 349 vk~~li~d~~~l~~~ 363 (395)
++..|++-+..++..
T Consensus 301 l~sdl~~~~~a~~~g 315 (428)
T COG0151 301 LESDLVELLLAAVDG 315 (428)
T ss_pred ccccHHHHHHHHHhC
Confidence 666666655555544
No 90
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.11 Score=50.43 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=49.8
Q ss_pred eeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-----------ccCcceeeeccccccccCCceee
Q psy9480 120 WSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-----------IYTESVSQLYMSNLLLMDGFKFD 188 (395)
Q Consensus 120 ~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-----------~~~~~IvQ~YI~~PlLi~grKFD 188 (395)
|.+-+.+++|.....+ -+-..++||.+++.|+|-.++++.+++.. .....||..+| +||
T Consensus 132 Y~fa~s~~e~~~a~~~-iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv---------~fd 201 (394)
T COG0027 132 YRFADSLEELRAAVEK-IGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFV---------KFD 201 (394)
T ss_pred ccccccHHHHHHHHHH-cCCCeecccccccCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEe---------cce
Confidence 4444567777776655 35578999999999999999999999842 13458888888 688
Q ss_pred eEEEEE
Q psy9480 189 LRVYVL 194 (395)
Q Consensus 189 lRvyvl 194 (395)
+-+-+|
T Consensus 202 ~EiTlL 207 (394)
T COG0027 202 FEITLL 207 (394)
T ss_pred EEEEEE
Confidence 887766
No 91
>KOG3895|consensus
Probab=95.54 E-value=0.12 Score=50.64 Aligned_cols=190 Identities=15% Similarity=0.278 Sum_probs=112.2
Q ss_pred ecccCCCCcccchHHHHHHHHHHHhh-CCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH
Q psy9480 83 INHFPGMANLESKAFLAYHLNRMRNH-FPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE 161 (395)
Q Consensus 83 vNh~p~~~~l~~K~~L~~~l~~~~~~-~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~ 161 (395)
||-.-..++++.|-.+..-|.+..+. .++.++.+|.||. |. .+++ ...+.-..+||=..+..|.|-..+++..
T Consensus 189 vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y-Pn--HK~m---~s~~tyPvVVkvghahsGmGKiKV~Nh~ 262 (488)
T KOG3895|consen 189 VNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY-PN--HKEM---LSQPTYPVVVKVGHAHSGMGKIKVENHE 262 (488)
T ss_pred cchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeec-CC--chhh---ccCCCCcEEEEecccccccceeeecchh
Confidence 45555556788888887777666554 4578899999984 53 2222 2223456888999999999999999988
Q ss_pred HHhcc------cCc-ceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEecc-CCCCCCCCCCCCCcccee
Q psy9480 162 EARGI------YTE-SVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLAT-CQYTSPETGNLTNQYMHL 233 (395)
Q Consensus 162 ~i~~~------~~~-~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~-~~y~~~~~~nl~~~~~HL 233 (395)
++... .+. .-+|-+|+ -|+|||+-=+ + +.+.+| .|.+. .+|.
T Consensus 263 dfqDi~svval~~Tyat~epFiD-------aKYDiriQKI--G-~nYKay------mRtsIsgnWK-------------- 312 (488)
T KOG3895|consen 263 DFQDIASVVALTKTYATAEPFID-------AKYDIRIQKI--G-HNYKAY------MRTSISGNWK-------------- 312 (488)
T ss_pred hhHhHHHHHHHHhhhhhcccccc-------ccceeehhhh--h-hhHHHH------hhhhhccCcc--------------
Confidence 77432 222 33455554 5999997433 1 122222 22221 1111
Q ss_pred cccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHH--HHHHHHHHHHchHHHHHhhhhcCcccCCCCCC
Q psy9480 234 TNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDID--DIIIKTIISVYPILKEKYEDLLPEHYHHNVSA 311 (395)
Q Consensus 234 TN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~--~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 311 (395)
|| .|+. +.++|. +--..-+.++... .+
T Consensus 313 tN---------------tGSa-------------------mLEQIamseRyklwvdtcse~-----------------fG 341 (488)
T KOG3895|consen 313 TN---------------TGSA-------------------MLEQIAMSERYKLWVDTCSEM-----------------FG 341 (488)
T ss_pred cC---------------chHH-------------------HHHHHHHHHHHHHHHHHHHHh-----------------cC
Confidence 23 2321 122221 1111111222221 14
Q ss_pred ceEEEeeeEEecCCCceEEEEeeC--CCCCCCCCcchHHHHHHHHHHHhh
Q psy9480 312 SFEILGFDILIDSTMKPFLLEVNR--SPSFNIAGIVDERVKRTLIYDTFK 359 (395)
Q Consensus 312 ~Fel~G~D~llD~~~kpwLLEVN~--~P~l~~~~~~d~~vk~~li~d~~~ 359 (395)
...+-.+|.+..++|+-+++|||. .|-+......|+.+...|+...+.
T Consensus 342 gldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskma 391 (488)
T KOG3895|consen 342 GLDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMA 391 (488)
T ss_pred CcceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhh
Confidence 567778999999999999999997 566666566688777777665543
No 92
>KOG0238|consensus
Probab=95.26 E-value=1.2 Score=46.02 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=44.7
Q ss_pred CcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccccc
Q psy9480 114 DFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLL 180 (395)
Q Consensus 114 ~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~Pl 180 (395)
+.+|-.--+..+-++.....++- +-..++|+..|..|+|+.+..+.+++... ....++.+||+||-
T Consensus 125 p~vpG~~g~~qs~e~~~~~a~eI-gyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npR 203 (670)
T KOG0238|consen 125 PLVPGYHGEDQSDEEAKKVAREI-GYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPR 203 (670)
T ss_pred ccccCcccccccHHHHHHHHHhc-CCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCc
Confidence 44554333333444444444432 44577799999999999999998887421 34599999999983
No 93
>KOG2158|consensus
Probab=94.15 E-value=0.015 Score=58.58 Aligned_cols=60 Identities=45% Similarity=0.815 Sum_probs=55.5
Q ss_pred CCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhccccccccc
Q psy9480 309 VSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKS 369 (395)
Q Consensus 309 ~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~~~~~r~ 369 (395)
..-||+.+|+|+++ +..++|++|+|..|++.++...+..++..+...++..+.+.+.++.
T Consensus 11 ~~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~i~~s~~~ 70 (565)
T KOG2158|consen 11 ESVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKR 70 (565)
T ss_pred eeeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccCCCccchh
Confidence 34699999999999 9999999999999999999999999999999999999999887654
No 94
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=0.42 Score=48.35 Aligned_cols=125 Identities=22% Similarity=0.276 Sum_probs=81.3
Q ss_pred ecccCCCCcccchHHHHHHHHHHHhhCCCCCCcc--cCeeec--cchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeC
Q psy9480 83 INHFPGMANLESKAFLAYHLNRMRNHFPEDYDFY--PRSWSL--PYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFN 158 (395)
Q Consensus 83 vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~--P~T~~L--p~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~ 158 (395)
+-.=||+..+-.|..++ -+=.+.+.+..+...+ +.||.+ |++++..++.+. -.++||..|+.|-|..+=-
T Consensus 312 iaNA~GtGV~ddka~~~-y~P~~~~~ylge~~lL~nv~T~~c~~~~el~~VL~~l~-----~lViK~~~~~gg~~~lvGp 385 (488)
T COG2308 312 IANALGTGVADDKALYA-YVPQMIEYYLGEEPLLPNVPTYWCGEPDELEHVLANLS-----ELVIKPVEGSGGYGMLVGP 385 (488)
T ss_pred EecCCCcCcccchhHHH-HHHHHHHHHcccccccCCCCeeecCCHHHHHHHHhchh-----hheEeeeccCCCCcceecc
Confidence 44457999999998665 3334444433333333 347766 556666666553 3677999998777776543
Q ss_pred ChH--H-------HhcccCcceeeeccc---cccccCC----ceeeeEEEEEEecccCceEEEEcceEEEeccC
Q psy9480 159 TLE--E-------ARGIYTESVSQLYMS---NLLLMDG----FKFDLRVYVLITCIDPLRIFVYNNGLVRLATC 216 (395)
Q Consensus 159 ~~~--~-------i~~~~~~~IvQ~YI~---~PlLi~g----rKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~ 216 (395)
... + |......||.|+-++ -|..++| |..|+|+|++.+. -.+++.-+|+.|++..
T Consensus 386 a~s~~e~a~~~~~i~a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~---~~~~v~pGGLtRVal~ 456 (488)
T COG2308 386 AASKAELAAFAERIKADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR---DGVQVMPGGLTRVALR 456 (488)
T ss_pred ccCHHHHHHHHHHHHhChhhhcccccccccccceEECCeeccccccceeEEEEcC---CceEEcccceeeeeec
Confidence 322 1 223346699998764 3444554 7899999999665 4478899999999987
No 95
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=92.05 E-value=0.99 Score=43.57 Aligned_cols=75 Identities=19% Similarity=0.200 Sum_probs=45.9
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCC------CCCceEeeCChHHHh
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGA------EGKGIKIFNTLEEAR 164 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs------~G~GI~li~~~~~i~ 164 (395)
-+|.|-.|++.-.++ ---+|+||.+.++.+.....+ .-..|+||.+|. |.+-+.. .+-+++.
T Consensus 111 wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d~~~~el----~FPvILKP~mgg~~~~~araKa~~a-~d~ee~k 178 (415)
T COG3919 111 WLCEKPLLYNRAEEL-------GLPYPKTYLVNSEIDTLVDEL----TFPVILKPGMGGSVHFEARAKAFTA-ADNEEMK 178 (415)
T ss_pred HHhhCcHHHHHHHHh-------CCCCcceEEecchhhhhhhhe----eeeEEecCCCCCcceeehhhheeec-cCHHHHH
Confidence 356777766544322 236899999987777666655 345999998764 2222222 3333331
Q ss_pred ---------cccCcceeeeccc
Q psy9480 165 ---------GIYTESVSQLYMS 177 (395)
Q Consensus 165 ---------~~~~~~IvQ~YI~ 177 (395)
...+..|||++|.
T Consensus 179 ~a~~~a~eeigpDnvvvQe~IP 200 (415)
T COG3919 179 LALHRAYEEIGPDNVVVQEFIP 200 (415)
T ss_pred HHHHHHHHhcCCCceEEEEecC
Confidence 0135699999995
No 96
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=91.15 E-value=1.4 Score=43.74 Aligned_cols=88 Identities=24% Similarity=0.348 Sum_probs=62.2
Q ss_pred CCCcEEEEcCCCCCCCCceEeeCChHHHhcc----------------cCcceeeeccccccccCCceeeeEEEEEEeccc
Q psy9480 136 HPHQVFISKPSRGAEGKGIKIFNTLEEARGI----------------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCID 199 (395)
Q Consensus 136 ~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~----------------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~ 199 (395)
+.....|+|..+|.-|.||.-+.+.+++... -...|||+.|..==.+++-- ..
T Consensus 255 ~e~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~av-----------AE 323 (403)
T TIGR02049 255 HTQPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAV-----------AE 323 (403)
T ss_pred CCCCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcc-----------cC
Confidence 4567899999999999999999999998421 24599999995321233321 12
Q ss_pred CceEEEEc----ceEEEeccCCCCCCCCCCCCCccceeccccc
Q psy9480 200 PLRIFVYN----NGLVRLATCQYTSPETGNLTNQYMHLTNYSV 238 (395)
Q Consensus 200 pl~vy~~~----~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i 238 (395)
|+ ||+.. +|+.|+.++.-.. +||+..-+|+---+.
T Consensus 324 PV-VYmid~~vvggfYRvh~~Rg~d---ENLNapG~~F~plaf 362 (403)
T TIGR02049 324 PV-VYMIGRTVTGGFYRVHTGRGVD---ENLNAPGMHFVPLSF 362 (403)
T ss_pred ce-EEEECCEEeEEEEEecCCCCCc---ccCCCCCCeeeeccc
Confidence 42 34433 7888998876654 899999999875554
No 97
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=90.77 E-value=4.8 Score=40.60 Aligned_cols=27 Identities=37% Similarity=0.314 Sum_probs=24.0
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhc
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARG 165 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~ 165 (395)
-..|+||+.+..|.|-.++.+.+++..
T Consensus 151 ~PvIVrP~~~lGG~G~~i~~n~eel~~ 177 (400)
T COG0458 151 YPVIVKPSFGLGGSGGGIAYNEEELEE 177 (400)
T ss_pred CCEEEecCcCCCCCceeEEeCHHHHHH
Confidence 468999999999999999999988843
No 98
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=90.22 E-value=0.79 Score=45.62 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=70.5
Q ss_pred cccchHHHHHHHHHHHhhCCCC---CCc--ccCeeecc--------------chHHHHHHHHHc-------CCCcEEEEc
Q psy9480 91 NLESKAFLAYHLNRMRNHFPED---YDF--YPRSWSLP--------------YQQEDFLSYVRE-------HPHQVFISK 144 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~---~~~--~P~T~~Lp--------------~~~~~f~~~~~~-------~~~~~wIvK 144 (395)
.--+|..-...+.+..+++.+. -+| -|...... +..+++++.+++ +.....|+|
T Consensus 187 ~~RrKS~HF~~Y~~va~eFa~~~~IDPWlInp~f~~c~~vdF~~~~G~~~La~~Vd~lL~kir~KY~eygI~e~PfV~VK 266 (404)
T PF08886_consen 187 FNRRKSNHFKAYDEVAKEFAKLIGIDPWLINPYFEQCGGVDFQEREGEECLASAVDQLLAKIRKKYKEYGIKEKPFVFVK 266 (404)
T ss_dssp GGS-TTHHHHHHHHHHHHHHHHHT--GGGG---EEEEE---TTSSTTHHHHHHHHHHHHHHHHHHHHHHT--S---EEEE
T ss_pred hhhhccchhHHHHHHHHHHHHhcCCCccccccchhccCCccCCccccHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 3457877777777766655321 122 23333221 122334444333 356788999
Q ss_pred CCCCCCCCceEeeCChHHHhcc----------------cCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcc
Q psy9480 145 PSRGAEGKGIKIFNTLEEARGI----------------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNN 208 (395)
Q Consensus 145 P~~gs~G~GI~li~~~~~i~~~----------------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~ 208 (395)
-.+|.-|.||..+++.+++... -...|||+.|..=-.+++---.-=+|++ +- | .-+
T Consensus 267 AD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmi----d~---~-vvg 338 (404)
T PF08886_consen 267 ADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMI----DR---Y-VVG 338 (404)
T ss_dssp EE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEE----TT---E-EEE
T ss_pred cCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEE----CC---E-EEE
Confidence 9999999999999999998421 2459999999643335653333333332 11 1 237
Q ss_pred eEEEeccCCCCCCCCCCCCCccceecccccc
Q psy9480 209 GLVRLATCQYTSPETGNLTNQYMHLTNYSVN 239 (395)
Q Consensus 209 g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~ 239 (395)
|+.|+.++.-.. +||+..-||+--.+..
T Consensus 339 gfyRvh~~rg~d---eNLNapGm~F~plaf~ 366 (404)
T PF08886_consen 339 GFYRVHTERGVD---ENLNAPGMHFVPLAFE 366 (404)
T ss_dssp EEEEEES--STT---TTTS--TT-EEEEE--
T ss_pred EEEEecCCCCCc---cCCCCCCCEeeecccc
Confidence 888998887665 8999999998766544
No 99
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=83.19 E-value=11 Score=37.00 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=39.3
Q ss_pred cccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc--------------cCcceeeeccc
Q psy9480 115 FYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI--------------YTESVSQLYMS 177 (395)
Q Consensus 115 ~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~--------------~~~~IvQ~YI~ 177 (395)
-+|+.|.=|.|. +...|||....-+|+|-++.++.+++... -+.+.||+||-
T Consensus 138 ~~P~~~~~PeeI-----------dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 138 RIPKKYKSPEEI-----------DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred CCCcccCChHHc-----------CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee
Confidence 456666655443 56899999977789999999999887321 24599999996
No 100
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=82.31 E-value=1.4 Score=43.58 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=30.2
Q ss_pred ceEEEeeeEEecCCCceEEEEeeCCCCCC-CCCcchHHHHHHHHHHHhhhccc
Q psy9480 312 SFEILGFDILIDSTMKPFLLEVNRSPSFN-IAGIVDERVKRTLIYDTFKILNL 363 (395)
Q Consensus 312 ~Fel~G~D~llD~~~kpwLLEVN~~P~l~-~~~~~d~~vk~~li~d~~~l~~~ 363 (395)
...++|+||..|.+|++|+||.|++-.-. ...-..+.+..+++-+++.-..+
T Consensus 67 ~~~~~g~Dl~r~~dG~w~VleDn~~~PsG~gyalenR~~~~r~~p~l~~~~~v 119 (330)
T PF04174_consen 67 RLHFYGADLVRDPDGRWRVLEDNTRAPSGLGYALENRRAMSRVFPELFRDANV 119 (330)
T ss_dssp S-SEEEEEEEE-SSS-EEEEEEE-SS---HHHHHHHHHHHHHH-HHHHHHS-B
T ss_pred EEEEEEEeeeECCCCCEEEEEecCCCCcHHHHHHHHHHHHHHhChhhhhhcCc
Confidence 46689999999999999999999954433 33333455555555555554433
No 101
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=79.14 E-value=2.9 Score=42.47 Aligned_cols=54 Identities=26% Similarity=0.302 Sum_probs=37.7
Q ss_pred EEEEcCCCCCCCCceEeeCChHHHhc-----ccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 140 VFISKPSRGAEGKGIKIFNTLEEARG-----IYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 140 ~wIvKP~~gs~G~GI~li~~~~~i~~-----~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
.|+.||..|-.|.+|.+++....+.. ..+.+|.|+|++=| .++|+-.-|..|++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~v 367 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESEDTDGNYAEEPRVVQQLIEWG-RFDGCYPMIGVWMV 367 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEeccCCCCCCCCeEEEEccCCc-ccCCcEEEEEEEEE
Confidence 49999999999999999976433311 13569999999855 45665434444433
No 102
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=77.54 E-value=10 Score=40.71 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=50.1
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc------
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG------ 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~------ 165 (395)
+++|.-|.-. -..+|..-.++|..|... .+ +. ..-|+.||..|-.|.+|.+++....+..
T Consensus 495 lsNKaiLplL----W~l~p~Hp~LLpayfe~d----~~---l~---~~~yV~KPi~GREG~nV~i~~~~g~~~~~~~g~y 560 (619)
T PRK10507 495 PGNKAILPVL----WSLFPHHRYLLDTDFTVN----DE---LV---KTGYAVKPIAGRCGSNIDLVSHQEEVLDKTSGKF 560 (619)
T ss_pred cccHHHHHHH----HHhCCCCcccccccccCC----cc---cc---cCCeEeccCCCcCCCCEEEEeCCCcEeeccCCCC
Confidence 4566555432 234565545666555321 11 11 2349999999999999999976222211
Q ss_pred ccCcceeeeccccccccCCceeeeEEE
Q psy9480 166 IYTESVSQLYMSNLLLMDGFKFDLRVY 192 (395)
Q Consensus 166 ~~~~~IvQ~YI~~PlLi~grKFDlRvy 192 (395)
..+.+|.|+|.+=| .++|...-|..|
T Consensus 561 ~~~~~IyQ~~~~LP-~f~~~~~~iGsw 586 (619)
T PRK10507 561 AEQKNIYQQLWCLP-KVDGKYIQVCTF 586 (619)
T ss_pred CCCCeEEEEeccCc-ccCCCEEEEEEE
Confidence 13569999999855 345533333333
No 103
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=72.73 E-value=1.2 Score=44.05 Aligned_cols=73 Identities=30% Similarity=0.453 Sum_probs=35.1
Q ss_pred ecccCCCCcccchHHHHHHHHHHHhhCCCC---CCcccCeeec-cchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeC
Q psy9480 83 INHFPGMANLESKAFLAYHLNRMRNHFPED---YDFYPRSWSL-PYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFN 158 (395)
Q Consensus 83 vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~---~~~~P~T~~L-p~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~ 158 (395)
+=+-||+..+..|..++-. -++.+.+-.+ ..-+|.+|.- |.+.+.+.+.+ .-|++||..|+.|+|+.+=.
T Consensus 234 iaNa~G~gv~edkal~~~l-p~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l-----~~lvvKp~~g~gg~~~~~G~ 307 (330)
T PF04174_consen 234 IANAPGSGVAEDKALYAFL-PRMIRYYLGEELLLPNVPTWWCGDPEDREYVLANL-----DELVVKPADGYGGKGVYIGP 307 (330)
T ss_dssp EES-TTTHHHHSTTTGGGH-HHHHHHHH-S--SSEE---EETTSHHHHHHHHHSG-----GGEEEEE--------EEEGG
T ss_pred EECCCccchhcchhHHHHh-HHHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhch-----hhcEEEecCCCCCCcceeCC
Confidence 3467899998888766533 3443332111 2336666654 34555555555 34899999999999999866
Q ss_pred ChH
Q psy9480 159 TLE 161 (395)
Q Consensus 159 ~~~ 161 (395)
+.+
T Consensus 308 ~~s 310 (330)
T PF04174_consen 308 KLS 310 (330)
T ss_dssp G--
T ss_pred cCC
Confidence 554
No 104
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=70.80 E-value=47 Score=31.20 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=42.3
Q ss_pred cccCCCCcccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCC
Q psy9480 84 NHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNT 159 (395)
Q Consensus 84 Nh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~ 159 (395)
.|-|-...++.|...-+.+.+.. + ..++|+++-.-.+.++.- +.. -..-||+||.+||.+.+|..-.+
T Consensus 10 ~~~~~~~~~~DK~~VR~yv~~~~---g--~~~l~pll~v~~~~~~i~--~~~-Lp~~fViK~nhgsg~~~i~~dk~ 77 (239)
T PF14305_consen 10 DRNPLFTKLADKYAVREYVEEKI---G--EEYLPPLLGVYDNPDDID--FDS-LPDKFVIKPNHGSGSNIIVRDKS 77 (239)
T ss_pred CCCccceecchHHHHHHHHHHhC---C--CceECceeecCCChhhhh--hhc-CCCCEEEEEecCCCcEEEEeCCc
Confidence 44555667778877666665432 2 247888776654443321 111 24689999999998877776554
No 105
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=63.75 E-value=77 Score=30.96 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.2
Q ss_pred EEEeeeEEecCC-CceEEEEeeCCCC
Q psy9480 314 EILGFDILIDST-MKPFLLEVNRSPS 338 (395)
Q Consensus 314 el~G~D~llD~~-~kpwLLEVN~~P~ 338 (395)
+-|-+|+-++.+ .++||||+|.--.
T Consensus 215 ~~~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 215 DNYVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred CCEEEEEEEcCCCCeEEEEEecCCcc
Confidence 346799999999 9999999998555
No 106
>KOG0237|consensus
Probab=63.05 E-value=1.8e+02 Score=31.27 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=38.6
Q ss_pred eeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------------ccCcceeeeccc
Q psy9480 119 SWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------------IYTESVSQLYMS 177 (395)
Q Consensus 119 T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------------~~~~~IvQ~YI~ 177 (395)
||.-|.+...|+. ..+....++|-...+-|+|+.+-.+.++-.. ..++.||.+.++
T Consensus 128 ~ft~~e~a~sfi~---~~~~~~~ViKAdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE~LE 196 (788)
T KOG0237|consen 128 TFTDPEEAKSFIQ---SATDKALVIKADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEELLE 196 (788)
T ss_pred eeCCHHHHHHHHH---hCCCcceEEeecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhhhcC
Confidence 5555545555544 4455788999999999999999998765421 235577777666
No 107
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=57.32 E-value=65 Score=33.11 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=40.8
Q ss_pred CCceEEEeeeEEecCCCceEEEEeeC-CCCCCCCCcchHHHHHHHHHHHhhhcccc
Q psy9480 310 SASFEILGFDILIDSTMKPFLLEVNR-SPSFNIAGIVDERVKRTLIYDTFKILNLN 364 (395)
Q Consensus 310 ~~~Fel~G~D~llD~~~kpwLLEVN~-~P~l~~~~~~d~~vk~~li~d~~~l~~~~ 364 (395)
.....+.|+|++-+.+|+.|+||=|. .||=....-.+++...+++-|++.-..+.
T Consensus 142 g~y~H~~g~dl~R~~dG~~~VLeDn~r~PSGvsY~LenR~~~~r~~Pely~~~~vr 197 (488)
T COG2308 142 GHYLHVCGTDLIRDPDGNFQVLEDNLRAPSGVSYALENRRAMARAFPELYEELRVR 197 (488)
T ss_pred ceEEEEeeeheeECCCCCEEEecccCcCCCchhHHHHhHHHHHHHChHHHhhcCCc
Confidence 34678899999999999999999998 67766555456666666666666555443
No 108
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=50.29 E-value=30 Score=34.48 Aligned_cols=76 Identities=22% Similarity=0.366 Sum_probs=46.7
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---- 166 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---- 166 (395)
.+++|..|... -..+|..-..+|..|. |.+-. .....|+.||..|-.|-+|.++.+.......
T Consensus 262 ilsNK~lLplL----W~~fPnHp~LL~t~F~-~~~~~--------~~~~~yv~KPl~gREGaNv~i~~~~~~~~~~~~G~ 328 (387)
T COG0754 262 ILSNKALLPLL----WERFPNHPNLLPTYFE-PDDEE--------KLGESYVRKPLFGREGANVSIFEDAGKVLDKADGP 328 (387)
T ss_pred HhccccHHHHH----HHhCCCCcccccccCC-CCccc--------cchhhhhccccccccCCCeeEEecCCceeecCCCC
Confidence 45667655533 2345655455555443 22210 1123499999999999999999874433221
Q ss_pred --cCcceeeeccccc
Q psy9480 167 --YTESVSQLYMSNL 179 (395)
Q Consensus 167 --~~~~IvQ~YI~~P 179 (395)
.+.+|.|+|.+=|
T Consensus 329 Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 329 YGEEGMIYQEFYPLP 343 (387)
T ss_pred ccccchhhhhhccCc
Confidence 3459999999755
No 109
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=48.47 E-value=20 Score=30.41 Aligned_cols=27 Identities=19% Similarity=0.011 Sum_probs=22.7
Q ss_pred EEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 314 EILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 314 el~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
.-|.+||.+.++|+..|+|+|..=+..
T Consensus 93 ~~~vlDvg~~~~G~~~lVE~N~~~~sG 119 (130)
T PF14243_consen 93 PAYVLDVGVTDDGGWALVEANDGWSSG 119 (130)
T ss_pred CeEEEEEEEeCCCCEEEEEecCccccc
Confidence 457899999999999999999865544
No 110
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=48.15 E-value=22 Score=29.06 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=25.7
Q ss_pred CceEEEeCCCc--HHHHHHHHHhCCCEEecCCCCCeEEEEccc
Q psy9480 27 KEATINLKRCM--YKIVEDVATLMGMGIVRDDEEPWDVYWSDF 67 (395)
Q Consensus 27 ~~~~~~~~~~~--~~~v~~~~~~~g~~~~~~~~~~~~i~W~~~ 67 (395)
..-++|+++|. .++++++|++.|... ... .|++++.+.
T Consensus 11 ~tk~VNV~~c~~a~eI~~rvLKKfg~~~--~~~-~~~~~v~d~ 50 (105)
T PF14847_consen 11 STKTVNVSGCFNAQEIKRRVLKKFGLPE--HPR-NYCFYVLDG 50 (105)
T ss_dssp EEEEEE--S--HHHHHHHHHHHHHTSS----CC-CEEEEEE-S
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCcc--ccc-cceEEEecc
Confidence 34589999997 579999999999877 333 799999986
No 111
>KOG2983|consensus
Probab=41.66 E-value=1e+02 Score=29.63 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEeeeEEecCCCceEEEEeeC
Q psy9480 314 EILGFDILIDSTMKPFLLEVNR 335 (395)
Q Consensus 314 el~G~D~llD~~~kpwLLEVN~ 335 (395)
+-|-||+-++..+|+|||.+|.
T Consensus 229 edfvfDVYi~k~~kv~lID~Np 250 (334)
T KOG2983|consen 229 EDFVFDVYITKERKVWLIDFNP 250 (334)
T ss_pred CCeeEEEEecCCCcEEEEeccC
Confidence 3467899999999999999886
No 112
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=39.56 E-value=4.2e+02 Score=26.78 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=51.3
Q ss_pred ecccCCCCccc-chHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCC-CCCCCCceEeeCCh
Q psy9480 83 INHFPGMANLE-SKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPS-RGAEGKGIKIFNTL 160 (395)
Q Consensus 83 vNh~p~~~~l~-~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~-~gs~G~GI~li~~~ 160 (395)
++=+|+...|. .+|.+.+ +.+.+.. --=+|+...+. +.+++...+..- +..+|+|-. .|.-|+|-+++++.
T Consensus 85 ~~v~p~~~~l~~~qdR~~e--K~~l~~~---Gi~va~~~~v~-~~~el~~~~~~~-g~p~VlKtr~gGYDGkGQ~~i~~~ 157 (375)
T COG0026 85 VKVFPSPDALRIAQDRLVE--KQFLDKA---GLPVAPFQVVD-SAEELDAAAADL-GFPAVLKTRRGGYDGKGQWRIRSD 157 (375)
T ss_pred cCcCCCHHHHHHHhhHHHH--HHHHHHc---CCCCCCeEEeC-CHHHHHHHHHHc-CCceEEEeccccccCCCeEEeeCc
Confidence 78888888775 4444432 1222221 12344544444 334444444442 368999987 66789999999987
Q ss_pred HHHhc------ccCcceeeeccc
Q psy9480 161 EEARG------IYTESVSQLYMS 177 (395)
Q Consensus 161 ~~i~~------~~~~~IvQ~YI~ 177 (395)
.++.. .....|+.+||.
T Consensus 158 ~~~~~~~~~~~~~~~~vlE~fV~ 180 (375)
T COG0026 158 ADLELRAAGLAEGGVPVLEEFVP 180 (375)
T ss_pred ccchhhHhhhhccCceeEEeecc
Confidence 66521 122348888884
No 113
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=38.83 E-value=26 Score=33.88 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.9
Q ss_pred eeeEEecCCCceEEEEeeCCCCCC
Q psy9480 317 GFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 317 G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
.|||++..+.+.|+||+|.--+-.
T Consensus 197 rFDFvi~~~~k~y~IE~NFY~~gG 220 (286)
T PF04556_consen 197 RFDFVIKTNKKIYLIETNFYGSGG 220 (286)
T ss_pred EEEEEEEcCCEEEEEEEeeecCCC
Confidence 689999999999999999966633
No 114
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=32.31 E-value=1.7e+02 Score=29.32 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=18.9
Q ss_pred cEEEEcCC--CCCCCC--ceEeeCChHHH
Q psy9480 139 QVFISKPS--RGAEGK--GIKIFNTLEEA 163 (395)
Q Consensus 139 ~~wIvKP~--~gs~G~--GI~li~~~~~i 163 (395)
..+++||. .|.+|+ |+.+.++.+++
T Consensus 41 ~PvVvK~~~~~ggkg~~GGV~~~~~~~e~ 69 (386)
T TIGR01016 41 GPVVVKAQVHAGGRGKAGGVKVAKSKEEA 69 (386)
T ss_pred CcEEEEecccCCCCccCceEEEeCCHHHH
Confidence 46999998 444554 89999887775
No 115
>PF08814 XisH: XisH protein; InterPro: IPR014919 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 2OKF_A.
Probab=30.20 E-value=47 Score=28.42 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCEEecCCCCCeEEEEcccC
Q psy9480 38 YKIVEDVATLMGMGIVRDDEEPWDVYWSDFS 68 (395)
Q Consensus 38 ~~~v~~~~~~~g~~~~~~~~~~~~i~W~~~~ 68 (395)
++.|+.+|++-||.+++++ ..+.|.+..
T Consensus 8 H~~Vk~AL~kdgW~IT~DP---l~l~~~~~~ 35 (135)
T PF08814_consen 8 HDAVKNALEKDGWTITHDP---LRLKYGGVD 35 (135)
T ss_dssp HHHHHHHHHHTT-EEEESS------EETTEE
T ss_pred HHHHHHHHHHcCCEEECCC---cEEEECcEE
Confidence 5799999999999999988 567788754
No 116
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=29.22 E-value=48 Score=33.76 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=22.1
Q ss_pred EEEe-eeEEecCCCceEEEEeeC-CCCCC
Q psy9480 314 EILG-FDILIDSTMKPFLLEVNR-SPSFN 340 (395)
Q Consensus 314 el~G-~D~llD~~~kpwLLEVN~-~P~l~ 340 (395)
.++| |||..|.++.+.|||.|+ .|..-
T Consensus 106 slyGRfDfa~dg~g~~KllE~NADTPT~L 134 (397)
T PHA02117 106 GLYGRFDLIMTPNGGPKMLEYNADTPTIL 134 (397)
T ss_pred cEEEEEEEEEcCCCCeEEEEecCCCCchH
Confidence 4555 999999999999999999 56544
No 117
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=25.15 E-value=95 Score=28.44 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=27.3
Q ss_pred ccCeeec--cchHHHHHHHHHcCCCcEEEEcCCC--CCCC--CceEeeCChHHHh
Q psy9480 116 YPRSWSL--PYQQEDFLSYVREHPHQVFISKPSR--GAEG--KGIKIFNTLEEAR 164 (395)
Q Consensus 116 ~P~T~~L--p~~~~~f~~~~~~~~~~~wIvKP~~--gs~G--~GI~li~~~~~i~ 164 (395)
+|+.... |.+..+....+ +...|++||.. |.|| -||.++.+.++..
T Consensus 18 vp~g~~a~s~eea~~~~~~l---~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~ 69 (202)
T PF08442_consen 18 VPRGVVATSPEEAREAAKEL---GGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAK 69 (202)
T ss_dssp --SEEEESSHHHHHHHHHHH---TTSSEEEEE-SSSSTTTTTTCEEEESSHHHHH
T ss_pred CCCeeecCCHHHHHHHHHHh---CCCcEEEEEeEeecCcccCCceeecCCHHHHH
Confidence 6777765 34444444444 34679999984 3343 3689999988874
No 118
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=24.86 E-value=1.3e+02 Score=23.98 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCCEEecCCCCCeEEEEcc
Q psy9480 38 YKIVEDVATLMGMGIVRDDEEPWDVYWSD 66 (395)
Q Consensus 38 ~~~v~~~~~~~g~~~~~~~~~~~~i~W~~ 66 (395)
.+.+...|...||.++.+.+ ++|++=..
T Consensus 16 se~i~~~l~~~G~~~~~~~e-~AD~iiiN 43 (98)
T PF00919_consen 16 SERIASILQAAGYEIVDDPE-EADVIIIN 43 (98)
T ss_pred HHHHHHHHHhcCCeeecccc-cCCEEEEE
Confidence 57899999999999999987 78887554
No 119
>KOG2157|consensus
Probab=24.82 E-value=79 Score=33.15 Aligned_cols=49 Identities=20% Similarity=0.041 Sum_probs=40.0
Q ss_pred CcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCC
Q psy9480 168 TESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTS 220 (395)
Q Consensus 168 ~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~ 220 (395)
+.||++.+..+++++.-|++-+|++.. ..+| .+.+++ .++.+|...+.+
T Consensus 263 R~~vlvt~~~pl~~y~yreg~lRf~t~--~y~~-~~nl~n-~~~HLtN~siqK 311 (497)
T KOG2157|consen 263 RQYVLVTHFDPLLLYRYREGFLRFSTE--PYGP-LVNLQN-MSVHLTNVSIQK 311 (497)
T ss_pred eEEEEeecccchhheeeccceEEEEec--cCcc-hhhhcc-cchhhhcccccc
Confidence 569999999977778999999999988 4456 667777 788888877766
No 120
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=24.70 E-value=65 Score=32.22 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=20.4
Q ss_pred eeeEEecCCCceEEEEeeC-CCCCC
Q psy9480 317 GFDILIDSTMKPFLLEVNR-SPSFN 340 (395)
Q Consensus 317 G~D~llD~~~kpwLLEVN~-~P~l~ 340 (395)
.|||..|.+|++.|||.|+ .|..-
T Consensus 101 RfDl~~dg~g~iKLlEyNADTPTsl 125 (387)
T COG0754 101 RFDLAYDGDGPIKLLEYNADTPTSL 125 (387)
T ss_pred eeEEEecCCCCeEEEEecCCCchHH
Confidence 4899999999999999998 55443
No 121
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.62 E-value=70 Score=20.75 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=16.3
Q ss_pred ccChHHHHHHHHHcCCChh
Q psy9480 254 KRDFTALNSWLLSQGLNST 272 (395)
Q Consensus 254 ~~~l~~l~~~l~~~g~~~~ 272 (395)
.|+-++|.++|.++|+...
T Consensus 3 tWs~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCCHHHHHHHHHHcCCCCC
Confidence 5899999999999988654
No 122
>PF13020 DUF3883: Domain of unknown function (DUF3883)
Probab=22.90 E-value=67 Score=25.07 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.8
Q ss_pred EeeeEEecC-CCceEEEEeeCCC
Q psy9480 316 LGFDILIDS-TMKPFLLEVNRSP 337 (395)
Q Consensus 316 ~G~D~llD~-~~kpwLLEVN~~P 337 (395)
.|+||.+.. ++...+|||=+.-
T Consensus 29 ~gyDi~~~~~~g~~~~IEVKst~ 51 (91)
T PF13020_consen 29 LGYDIKSFDEDGEERFIEVKSTT 51 (91)
T ss_pred CCeEEEEEeCCCCEEEEEEEEEe
Confidence 699999987 8999999999866
No 123
>PF13635 DUF4143: Domain of unknown function (DUF4143)
Probab=22.46 E-value=79 Score=24.53 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.9
Q ss_pred eeeEEecCCCceEEEEeeC
Q psy9480 317 GFDILIDSTMKPFLLEVNR 335 (395)
Q Consensus 317 G~D~llD~~~kpwLLEVN~ 335 (395)
-+||++...++.+.|||-.
T Consensus 71 EVDfv~~~~~~~~~IEVK~ 89 (90)
T PF13635_consen 71 EVDFVIENGGRIIPIEVKY 89 (90)
T ss_pred EEEEEEEeCCEEEEEEEEE
Confidence 5899999888999999964
No 124
>KOG0782|consensus
Probab=22.14 E-value=31 Score=36.38 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCCCCCceEeeCChHHHhcccCcceeeecc
Q psy9480 137 PHQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYM 176 (395)
Q Consensus 137 ~~~~wIvKP~~gs~G~GI~li~~~~~i~~~~~~~IvQ~YI 176 (395)
+...||+||..+.--+-+.++-++... ......++|-+.
T Consensus 351 k~rpFvikPtsSplmkPLLVFVNPKSG-GNqGsK~lq~f~ 389 (1004)
T KOG0782|consen 351 KGRPFVIKPTSSPLMKPLLVFVNPKSG-GNQGSKALQTFC 389 (1004)
T ss_pred cCCceEEccCCCCCCCceEEEecCCCC-CcchHHHHHHHH
Confidence 345899999988888888888777655 444555666543
No 125
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=20.41 E-value=1.1e+02 Score=17.71 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=10.0
Q ss_pred eeEEecCCCceEE
Q psy9480 318 FDILIDSTMKPFL 330 (395)
Q Consensus 318 ~D~llD~~~kpwL 330 (395)
.++..|.+|+.|+
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 4677899999997
Done!