Query psy9480
Match_columns 395
No_of_seqs 219 out of 1477
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 20:30:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 9.5E-71 3.3E-75 542.8 24.9 322 34-384 13-374 (380)
2 2q7d_A Inositol-tetrakisphosph 99.2 7.6E-10 2.6E-14 108.5 17.0 150 39-194 36-214 (346)
3 4fu0_A D-alanine--D-alanine li 99.1 1.4E-09 4.7E-14 107.0 18.4 179 116-361 154-347 (357)
4 4eg0_A D-alanine--D-alanine li 99.1 2.9E-09 9.8E-14 102.7 16.9 178 93-345 106-292 (317)
5 3i12_A D-alanine-D-alanine lig 99.1 9.2E-09 3.1E-13 101.3 20.7 161 116-345 155-328 (364)
6 1i7n_A Synapsin II; synapse, p 99.1 8.7E-10 3E-14 106.2 12.3 188 83-357 102-303 (309)
7 3e5n_A D-alanine-D-alanine lig 99.0 5.9E-09 2E-13 103.6 17.5 161 116-345 174-347 (386)
8 2i87_A D-alanine-D-alanine lig 99.0 5.9E-09 2E-13 102.6 17.3 161 116-343 144-317 (364)
9 1z2n_X Inositol 1,3,4-trisphos 99.0 2E-09 7E-14 103.7 13.6 90 91-194 95-188 (324)
10 1iow_A DD-ligase, DDLB, D-ALA\ 99.0 1.2E-08 4.1E-13 97.0 18.7 173 92-343 94-281 (306)
11 3tqt_A D-alanine--D-alanine li 99.0 7.3E-09 2.5E-13 102.5 17.8 142 138-345 179-329 (372)
12 2p0a_A Synapsin-3, synapsin II 99.0 6.3E-10 2.2E-14 108.6 9.6 191 83-360 119-323 (344)
13 1e4e_A Vancomycin/teicoplanin 99.0 1.4E-08 4.7E-13 99.0 18.8 142 139-343 166-316 (343)
14 3k3p_A D-alanine--D-alanine li 99.0 5.1E-09 1.8E-13 104.0 15.5 163 116-345 177-349 (383)
15 1pk8_A RAT synapsin I; ATP bin 99.0 3.7E-09 1.3E-13 105.3 14.3 159 112-357 244-415 (422)
16 3se7_A VANA; alpha-beta struct 99.0 8.6E-09 2.9E-13 100.7 16.6 146 139-345 166-318 (346)
17 2fb9_A D-alanine:D-alanine lig 98.9 1.1E-08 3.7E-13 99.1 13.2 137 139-343 151-296 (322)
18 1uc8_A LYSX, lysine biosynthes 98.9 2.9E-09 9.9E-14 99.8 8.3 89 91-194 85-184 (280)
19 1ehi_A LMDDL2, D-alanine:D-lac 98.9 9.1E-08 3.1E-12 94.6 19.3 180 116-359 150-353 (377)
20 3r5x_A D-alanine--D-alanine li 98.9 1.6E-08 5.3E-13 96.7 13.1 172 92-345 95-276 (307)
21 3lwb_A D-alanine--D-alanine li 98.8 6.7E-08 2.3E-12 95.5 15.9 147 138-345 188-343 (373)
22 3ax6_A Phosphoribosylaminoimid 98.8 1.3E-07 4.5E-12 93.2 16.0 166 92-341 98-266 (380)
23 2r85_A PURP protein PF1517; AT 98.7 4.2E-08 1.4E-12 94.4 10.9 152 139-340 127-291 (334)
24 2pvp_A D-alanine-D-alanine lig 98.7 1E-07 3.6E-12 94.0 13.5 171 116-360 164-346 (367)
25 3q2o_A Phosphoribosylaminoimid 98.7 2.7E-07 9.4E-12 91.3 16.5 146 116-341 127-283 (389)
26 3k5i_A Phosphoribosyl-aminoimi 98.7 3.5E-07 1.2E-11 91.2 15.8 151 116-340 138-295 (403)
27 4e4t_A Phosphoribosylaminoimid 98.6 4.8E-07 1.6E-11 90.8 15.4 146 116-340 148-307 (419)
28 3vot_A L-amino acid ligase, BL 98.6 3.5E-07 1.2E-11 91.6 14.2 49 138-192 145-211 (425)
29 3ouz_A Biotin carboxylase; str 98.6 1.1E-06 3.9E-11 88.4 18.1 153 116-340 134-300 (446)
30 1ulz_A Pyruvate carboxylase N- 98.6 8.7E-07 3E-11 89.3 17.0 169 92-340 112-295 (451)
31 2vpq_A Acetyl-COA carboxylase; 98.6 9.6E-07 3.3E-11 89.0 17.0 131 139-340 152-296 (451)
32 4dim_A Phosphoribosylglycinami 98.6 1.5E-06 5.2E-11 86.0 18.0 70 116-193 124-202 (403)
33 3orq_A N5-carboxyaminoimidazol 98.6 4.3E-07 1.5E-11 89.7 13.5 72 116-196 125-202 (377)
34 1gsa_A Glutathione synthetase; 98.6 2.3E-07 8E-12 88.1 11.2 72 115-194 134-214 (316)
35 2z04_A Phosphoribosylaminoimid 98.6 1.5E-07 5.2E-12 92.1 9.4 89 92-197 90-185 (365)
36 3lp8_A Phosphoribosylamine-gly 98.5 1.4E-06 4.8E-11 87.9 15.4 77 92-177 121-210 (442)
37 1kjq_A GART 2, phosphoribosylg 98.5 2.4E-06 8.3E-11 84.2 16.5 147 116-340 128-286 (391)
38 3aw8_A PURK, phosphoribosylami 98.5 3.3E-06 1.1E-10 82.7 17.2 169 92-342 94-268 (369)
39 3mjf_A Phosphoribosylamine--gl 98.5 1E-06 3.4E-11 88.7 13.2 88 92-196 105-205 (431)
40 2w70_A Biotin carboxylase; lig 98.4 6E-06 2E-10 83.1 17.8 52 139-197 154-218 (449)
41 2yw2_A Phosphoribosylamine--gl 98.4 2.8E-06 9.5E-11 84.8 14.8 78 91-177 99-189 (424)
42 2ip4_A PURD, phosphoribosylami 98.4 3.9E-06 1.4E-10 83.6 15.3 87 92-195 99-194 (417)
43 3ln6_A Glutathione biosynthesi 98.4 1.5E-06 5.2E-11 93.1 12.8 86 93-194 483-578 (750)
44 2yrx_A Phosphoribosylglycinami 98.4 4.4E-06 1.5E-10 84.3 15.3 70 116-195 138-220 (451)
45 2dwc_A PH0318, 433AA long hypo 98.4 3.5E-06 1.2E-10 84.4 14.3 150 116-340 136-299 (433)
46 2qk4_A Trifunctional purine bi 98.4 5.2E-06 1.8E-10 83.7 15.3 87 92-195 126-226 (452)
47 1vkz_A Phosphoribosylamine--gl 98.4 4.6E-06 1.6E-10 83.2 14.4 177 93-341 105-294 (412)
48 2dzd_A Pyruvate carboxylase; b 98.4 1.2E-05 4E-10 81.3 17.4 52 139-197 158-222 (461)
49 1w96_A ACC, acetyl-coenzyme A 98.4 1.1E-05 3.8E-10 83.6 17.6 143 125-340 222-375 (554)
50 3ln7_A Glutathione biosynthesi 98.3 2.6E-06 8.9E-11 91.2 13.0 87 92-194 487-584 (757)
51 2xcl_A Phosphoribosylamine--gl 98.3 2.3E-06 7.9E-11 85.4 11.9 88 91-195 99-199 (422)
52 3vmm_A Alanine-anticapsin liga 98.3 8.3E-06 2.8E-10 83.1 15.8 80 91-179 136-234 (474)
53 2pn1_A Carbamoylphosphate synt 98.3 1.2E-06 4.1E-11 84.3 9.1 84 92-191 112-199 (331)
54 3jrx_A Acetyl-COA carboxylase 98.3 9E-06 3.1E-10 84.8 15.2 132 138-340 244-384 (587)
55 3glk_A Acetyl-COA carboxylase 98.3 9.2E-06 3.1E-10 84.0 15.0 132 138-340 228-368 (540)
56 3df7_A Putative ATP-grAsp supe 98.3 5.6E-06 1.9E-10 79.4 12.3 44 138-195 133-176 (305)
57 3eth_A Phosphoribosylaminoimid 98.3 2.5E-05 8.6E-10 76.5 16.7 168 84-341 66-247 (355)
58 3u9t_A MCC alpha, methylcroton 98.0 1.2E-05 4E-10 85.4 9.5 143 126-340 167-322 (675)
59 3n6r_A Propionyl-COA carboxyla 98.0 1E-05 3.4E-10 86.0 8.4 131 139-340 153-296 (681)
60 3t7a_A Inositol pyrophosphate 98.0 2.9E-06 1E-10 80.6 3.7 216 60-358 60-310 (330)
61 1a9x_A Carbamoyl phosphate syn 98.0 0.00013 4.3E-09 81.4 16.6 60 116-177 689-757 (1073)
62 4ffl_A PYLC; amino acid, biosy 98.0 1E-05 3.5E-10 79.0 6.9 39 139-177 126-164 (363)
63 1a9x_A Carbamoyl phosphate syn 97.9 0.00013 4.5E-09 81.3 15.8 73 116-197 143-224 (1073)
64 2qf7_A Pyruvate carboxylase pr 97.8 8.6E-05 2.9E-09 83.2 11.4 132 138-340 171-316 (1165)
65 3va7_A KLLA0E08119P; carboxyla 97.7 0.00018 6E-09 81.0 12.7 130 139-339 181-324 (1236)
66 3hbl_A Pyruvate carboxylase; T 97.7 0.00017 5.9E-09 80.7 12.2 41 139-179 156-209 (1150)
67 2r7k_A 5-formaminoimidazole-4- 97.5 0.0006 2.1E-08 66.8 11.0 54 272-340 265-318 (361)
68 3n6x_A Putative glutathionylsp 97.1 0.0003 1E-08 71.1 4.7 125 82-217 309-453 (474)
69 2pbz_A Hypothetical protein; N 97.1 0.0042 1.4E-07 59.8 12.2 39 138-177 125-167 (320)
70 2cqy_A Propionyl-COA carboxyla 96.5 0.0028 9.7E-08 49.9 5.0 61 116-178 23-98 (108)
71 2io8_A Bifunctional glutathion 92.5 0.24 8.4E-06 51.6 7.8 75 91-179 494-574 (619)
72 3k1t_A Glutamate--cysteine lig 91.3 0.56 1.9E-05 45.7 8.1 137 91-238 204-382 (432)
73 2vob_A Trypanothione synthetas 87.1 0.49 1.7E-05 49.6 4.7 87 91-192 509-601 (652)
74 1wr2_A Hypothetical protein PH 77.5 1.8 6.3E-05 38.9 4.1 60 116-177 36-117 (238)
75 3n6x_A Putative glutathionylsp 65.1 16 0.00054 36.7 7.8 92 272-363 81-193 (474)
76 2fp4_B Succinyl-COA ligase [GD 36.4 58 0.002 31.6 6.4 48 116-164 19-77 (395)
77 3ufx_B Succinyl-COA synthetase 33.6 48 0.0016 32.2 5.3 60 116-177 19-95 (397)
78 2nu8_B SCS-beta, succinyl-COA 23.9 96 0.0033 29.9 5.5 47 116-163 19-69 (388)
79 4e9m_A Nucleotide-binding olig 23.0 4.1 0.00014 33.9 -3.8 19 325-343 105-123 (144)
80 2inb_A Hypothetical protein; Z 22.4 54 0.0018 27.1 2.8 27 38-67 9-35 (140)
81 2io8_A Bifunctional glutathion 22.0 50 0.0017 34.2 3.2 24 315-339 314-338 (619)
82 2vob_A Trypanothione synthetas 21.7 64 0.0022 33.6 3.9 24 316-339 327-352 (652)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=9.5e-71 Score=542.77 Aligned_cols=322 Identities=25% Similarity=0.422 Sum_probs=239.4
Q ss_pred CCCcHHHHHHHHHhCC-CEEecCCCCCeEEEEcccCC-ChhhhhcC-CccceecccCCCCcccchHHHHHHHHHHHhhCC
Q psy9480 34 KRCMYKIVEDVATLMG-MGIVRDDEEPWDVYWSDFSV-STVMSKSM-EVYHRINHFPGMANLESKAFLAYHLNRMRNHFP 110 (395)
Q Consensus 34 ~~~~~~~v~~~~~~~g-~~~~~~~~~~~~i~W~~~~~-~~~~~~~l-~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~ 110 (395)
+.+.|+.|+++|++.| |.++++++.+|||+|++... +...+... .++|+||||||+++||+|+.|+++|+++. ..+
T Consensus 13 ~~svy~~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~ 91 (380)
T 3tig_A 13 NSTVYAEVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSP-ELT 91 (380)
T ss_dssp SCHHHHHHHHHHHHTTSEEECCTTCSCCSEEECCSSSCCGGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHH
T ss_pred CccHHHHHHHHHHhcCCeEEeCCCCCceeEEEecCCCCCHHHhccCCCcceEEeecCCcccccccHHHHHHHHHhh-hcc
Confidence 4567999999999999 99998776689999998653 33444433 67899999999999999999999999854 457
Q ss_pred CCCCcccCeeec-cc-----------------------hHHHHHHHHHc----CCCcEEEEcCCCCCCCCceEeeCChHH
Q psy9480 111 EDYDFYPRSWSL-PY-----------------------QQEDFLSYVRE----HPHQVFISKPSRGAEGKGIKIFNTLEE 162 (395)
Q Consensus 111 ~~~~~~P~T~~L-p~-----------------------~~~~f~~~~~~----~~~~~wIvKP~~gs~G~GI~li~~~~~ 162 (395)
+.++|+|+||.| |. |+++|++.+++ +.+++||+||.++++|+||.++++.++
T Consensus 92 ~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~ 171 (380)
T 3tig_A 92 ETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATE 171 (380)
T ss_dssp TTCTTSCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHH
T ss_pred cccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHH
Confidence 789999999999 75 45678888764 467899999999999999999999998
Q ss_pred Hhc----ccCcceeeecccccccc--CCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceeccc
Q psy9480 163 ARG----IYTESVSQLYMSNLLLM--DGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNY 236 (395)
Q Consensus 163 i~~----~~~~~IvQ~YI~~PlLi--~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~ 236 (395)
+.. ....+|||+||++|+|| +|+|||||+|||||| ||++|+|++|++|||+++|+. .|+++.++||||+
T Consensus 172 i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~~---~~~~~~~~HLTN~ 246 (380)
T 3tig_A 172 LLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYSD---TNFQDMTSHLTNH 246 (380)
T ss_dssp HHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC---------------------
T ss_pred HHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcCc---cchhhhhhhcccc
Confidence 843 35679999999999999 999999999999998 999999999999999999987 6888999999999
Q ss_pred ccccC-CCCCCCCCCCCCccChHHHHHHHHHc-CCCh-hHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCce
Q psy9480 237 SVNKS-SENYNKSPERGSKRDFTALNSWLLSQ-GLNS-TKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASF 313 (395)
Q Consensus 237 ~i~k~-~~~~~~~~~~g~~~~l~~l~~~l~~~-g~~~-~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~F 313 (395)
++||+ +++|...+ .|++|++++|.+||++. |.++ +.+|++|+++|..++.|+++.+... ..+.+||
T Consensus 247 ~iqk~~~~~y~~~~-~g~~~~~~~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~----------~~~~~~F 315 (380)
T 3tig_A 247 CIQKEHSKNYGRYE-EGNEMFFEEFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTK----------YLPYHSF 315 (380)
T ss_dssp -----------------CCBCHHHHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCT----------TSSSEEC
T ss_pred cccccccccccccc-CCCcCcHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhc----------ccCCceE
Confidence 99996 56787655 48999999999999865 6666 5899999999999999998876421 1134699
Q ss_pred EEEeeeEEecCCCceEEEEeeCCCCCCCCCcchHHHHHHHHHHHhhhcccccccccccCCCCCCCCCCCCC
Q psy9480 314 EILGFDILIDSTMKPFLLEVNRSPSFNIAGIVDERVKRTLIYDTFKILNLNQNRKSILFPSNDDSENQSSN 384 (395)
Q Consensus 314 el~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d~~vk~~li~d~~~l~~~~~~~r~~~~p~~~~~~~~~~~ 384 (395)
|+||+|||||++++|||||||++|++.. .+.++|++++++++.. ++||++...+.++++
T Consensus 316 El~G~D~lid~~l~~wllEVN~~P~~~q------~~i~~l~~~~~~iavd------p~f~~~~~~~~~~~~ 374 (380)
T 3tig_A 316 QLFGFDFMVDKNLKVWLIEVNGAPACAQ------KLYAELCKGIVDLAIS------SVFPLNEENHKPTED 374 (380)
T ss_dssp EEEEEEEEEBTTCCEEEEEEESSCCCCT------TTHHHHHHHHHHHTTT------TTSCCCC--------
T ss_pred EEEeEEEEEcCCCcEEEEEEeCCCCccH------HhHHHHHHHHHHHhcc------cccCCccccCCCCCC
Confidence 9999999999999999999999999974 3788899999999976 789999888876654
No 2
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=99.16 E-value=7.6e-10 Score=108.51 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCCEEecCCC-------CCeEEEEcccCCC-----------hhhhhcC------C-ccceecccCCCCccc
Q psy9480 39 KIVEDVATLMGMGIVRDDE-------EPWDVYWSDFSVS-----------TVMSKSM------E-VYHRINHFPGMANLE 93 (395)
Q Consensus 39 ~~v~~~~~~~g~~~~~~~~-------~~~~i~W~~~~~~-----------~~~~~~l------~-~~q~vNh~p~~~~l~ 93 (395)
+-+.+++++.|...+.-+. ..+|+++....-. ......+ . .--.+|-..+...+.
T Consensus 36 ~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp~~ai~~~~ 115 (346)
T 2q7d_A 36 QAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLL 115 (346)
T ss_dssp HHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTT
T ss_pred HHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCCHHHHHHhh
Confidence 4577888899987553221 1367776653210 0011111 1 123467777777788
Q ss_pred chHHHHHHHHHHHhhCCCCCCcccCeeeccch-HHHHHHHHHc-CCCcEEEEcCCC--CCCCCceEeeCChHHHhcccCc
Q psy9480 94 SKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQ-QEDFLSYVRE-HPHQVFISKPSR--GAEGKGIKIFNTLEEARGIYTE 169 (395)
Q Consensus 94 ~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~-~~~f~~~~~~-~~~~~wIvKP~~--gs~G~GI~li~~~~~i~~~~~~ 169 (395)
.|..+.+.|.+..-.....---+|+|+.+... .++....+.. ..+-.+|+||.. |+.|.|+.++.+.+++.....+
T Consensus 116 dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~~~~ 195 (346)
T 2q7d_A 116 DRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPP 195 (346)
T ss_dssp BHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCSSTTCCEEEEECSGGGTTC--CC
T ss_pred hHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCCcceeeeeEEecCHHHHHhcCCC
Confidence 99999999987632111111357999998642 1222233322 224578999985 4558899999999988666677
Q ss_pred ceeeeccccccccCCceeeeEEEEE
Q psy9480 170 SVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 170 ~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
++||+||+.+ | .|+|+||+
T Consensus 196 ~lvQefI~~~----G--~dirv~Vv 214 (346)
T 2q7d_A 196 CVVQNFINHN----A--VLYKVFVV 214 (346)
T ss_dssp EEEEECCCCT----T--EEEEEEEE
T ss_pred EEEEEeeCCC----C--eEEEEEEE
Confidence 9999999743 4 79999997
No 3
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.15 E-value=1.4e-09 Score=106.97 Aligned_cols=179 Identities=13% Similarity=0.119 Sum_probs=103.1
Q ss_pred ccCeeeccc-hH-HHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCce
Q psy9480 116 YPRSWSLPY-QQ-EDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFK 186 (395)
Q Consensus 116 ~P~T~~Lp~-~~-~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grK 186 (395)
+|++..+.. +. ..+.....+ -+-.+|+||..|+.|+||.++++.+++.. ....+++|+||+ |+.
T Consensus 154 ~p~~~~~~~~~~~~~~~~~~~~-lg~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~------G~e 226 (357)
T 4fu0_A 154 VPKSVTFKRFNEEAAMKEIEAN-LTYPLFIKPVRAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN------GFE 226 (357)
T ss_dssp CCCEEEEEGGGHHHHHHHHHHH-CCSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC------SEE
T ss_pred CCCEEeecCCChHHHHHHHHHh-cCCCEEEEECCCCCCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC------CEE
Confidence 567766642 22 222222222 24578999999999999999999988742 245689999996 666
Q ss_pred eeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHH
Q psy9480 187 FDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLS 266 (395)
Q Consensus 187 FDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~ 266 (395)
+.+. |+... ...+ ..-+.......-|+...+. ..+...+.+ .
T Consensus 227 ~~v~--vl~~~--~~~~--~~v~~~~~~~~~~d~~~k~-~~~~~~~~~-------------------p------------ 268 (357)
T 4fu0_A 227 VGCA--VLGID--ELIV--GRVDEIELSSGFFDYTEKY-TLKSSKIYM-------------------P------------ 268 (357)
T ss_dssp EEEE--EEESS--SEEE--CCCEEEEECHHHHTSCSBC-SSCCEEEES-------------------S------------
T ss_pred EEEE--EEecC--CceE--EEEEEEEcccccccccccc-cCCCceEec-------------------C------------
Confidence 5554 33221 1111 0111111111111110000 000000000 0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcch
Q psy9480 267 QGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIVD 346 (395)
Q Consensus 267 ~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~d 346 (395)
... .+.+.++|+++..+++.++ +|..+.++||++|++|++|+||||+.|+|+..|.+-
T Consensus 269 a~l-~~~~~~~i~~~A~~~~~aL---------------------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~p 326 (357)
T 4fu0_A 269 ARI-DAEAEKRIQEAAVTIYKAL---------------------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYP 326 (357)
T ss_dssp CSC-CHHHHHHHHHHHHHHHHHT---------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHH
T ss_pred CCC-CHHHHHHHHHHHHHHHHHh---------------------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHHH
Confidence 001 2456677777777776654 577889999999999999999999999999876443
Q ss_pred HHH------HHHHHHHHhhhc
Q psy9480 347 ERV------KRTLIYDTFKIL 361 (395)
Q Consensus 347 ~~v------k~~li~d~~~l~ 361 (395)
... .+.|++.+++++
T Consensus 327 ~~~~~~G~~~~~li~~li~~a 347 (357)
T 4fu0_A 327 NMMKGIGLSFSQMLDKLIGLY 347 (357)
T ss_dssp HHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHhCcCHHHHHHHHHHHH
Confidence 222 246666666655
No 4
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.08 E-value=2.9e-09 Score=102.70 Aligned_cols=178 Identities=12% Similarity=0.072 Sum_probs=95.1
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeecc--chHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-----
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLP--YQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG----- 165 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp--~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~----- 165 (395)
..|..+.+.++++. -=+|+|+.+. .+..++...+...-+-.+|+||..++.|+||.++++.+++..
T Consensus 106 ~dK~~~k~~l~~~G-------ip~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~ 178 (317)
T 4eg0_A 106 LDKFRTKLVWQQTG-------VPTPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEA 178 (317)
T ss_dssp HCHHHHHHHHHHTT-------CCCCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHH
T ss_pred hCHHHHHHHHHHCC-------cCCCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH
Confidence 46666665554322 1257777664 344455422111113468999999999999999999887632
Q ss_pred --ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCC
Q psy9480 166 --IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSE 243 (395)
Q Consensus 166 --~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~ 243 (395)
....++||+||+. |+ ++++.|+-....|.......+++. .|. .+|.
T Consensus 179 ~~~~~~~lvEe~i~~-----G~--E~~v~vl~~~~~~~~~i~~~~~~~-----~~~--------------~k~~------ 226 (317)
T 4eg0_A 179 ATHDKIVIVEKSIEG-----GG--EYTACIAGDLDLPLIKIVPAGEFY-----DYH--------------AKYV------ 226 (317)
T ss_dssp TTTCSEEEEEECCCS-----SE--EEEEEEETTCCCCCEEEEC-------------------------------------
T ss_pred HhCCCeEEEEcCCCC-----Cc--EEEEEEECCcccceEEEeeCCcee-----chh--------------hccc------
Confidence 2356999999972 53 566666522222211111111100 000 0000
Q ss_pred CCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEec
Q psy9480 244 NYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILID 323 (395)
Q Consensus 244 ~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD 323 (395)
... .....+. .. .+.+.+++.+++.+++.++ +|....++||++|
T Consensus 227 ---~g~-~~~~~P~----------~l-~~~~~~~l~~~a~~~~~~l---------------------g~~G~~~vD~~~~ 270 (317)
T 4eg0_A 227 ---AND-TQYLIPC----------GL-PAEQETELKRIARRAFDVL---------------------GCTDWGRADFMLD 270 (317)
T ss_dssp -------CEEESSC----------SS-CHHHHHHHHHHHHHHHHTT---------------------TCCSEEEEEEEEC
T ss_pred ---CCC-eeEEcCC----------CC-CHHHHHHHHHHHHHHHHHh---------------------CCCceEEEEEEEe
Confidence 000 0000000 01 1345566666666655443 4567889999999
Q ss_pred CCCceEEEEeeCCCCCCCCCcc
Q psy9480 324 STMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 324 ~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+++++|+||||..|++...+.+
T Consensus 271 ~~g~~~vlEiN~~pg~t~~s~~ 292 (317)
T 4eg0_A 271 AAGNAYFLEVNTAPGMTDHSLP 292 (317)
T ss_dssp TTCCEEEEEEESSCCCSTTSHH
T ss_pred CCCCEEEEEeeCCCCCCcccHH
Confidence 9999999999999999987654
No 5
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.07 E-value=9.2e-09 Score=101.34 Aligned_cols=161 Identities=14% Similarity=0.180 Sum_probs=94.9
Q ss_pred ccCeeeccc------hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeecccccccc
Q psy9480 116 YPRSWSLPY------QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLM 182 (395)
Q Consensus 116 ~P~T~~Lp~------~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi 182 (395)
.|+++.+.. +..++...+ +-.+|+||..++.|.||.++++.+++.. ....++||+||+
T Consensus 155 ~p~~~~~~~~~~~~~~~~~~~~~l----g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~----- 225 (364)
T 3i12_A 155 IAPFITLTRTNRHAFSFAEVESRL----GLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK----- 225 (364)
T ss_dssp BCCEEEEETTTGGGCCHHHHHHHH----CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC-----
T ss_pred CCCEEEEEccccchhhHHHHHHhc----CCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC-----
Confidence 466666542 344454444 3468999999999999999999888732 245799999996
Q ss_pred CCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHH
Q psy9480 183 DGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNS 262 (395)
Q Consensus 183 ~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~ 262 (395)
|+ ++++-|+.... + .+ ..-|-+.....-|+. ...+. .+.. . ....+.
T Consensus 226 -G~--E~~v~vl~~~~-~-~~--~~~~ei~~~~~~~~~------~~ky~--~~~~----~---------~~~~Pa----- 272 (364)
T 3i12_A 226 -GR--EIECAVLGNDN-P-QA--STCGEIVLNSEFYAY------DTKYI--DDNG----A---------QVVVPA----- 272 (364)
T ss_dssp -SE--EEEEEEEESSS-C-EE--EEEEEEECCTTCC--------TTTTS--GGGG----C---------EEESSC-----
T ss_pred -Ce--EEEEEEEeCCC-c-eE--eeeEEEecCCCccCH------HHccc--CCCc----e---------EEEeCC-----
Confidence 64 55555553321 2 11 111222211111111 00000 0000 0 000000
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCC
Q psy9480 263 WLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIA 342 (395)
Q Consensus 263 ~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~ 342 (395)
.. .+.+.++|.+++.+++.++ +|....++||++|+++++|++|||+.|+++..
T Consensus 273 -----~l-~~~~~~~i~~~a~~~~~al---------------------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~ 325 (364)
T 3i12_A 273 -----QI-PSEVNDKIRAIAIQAYQTL---------------------GCAGMARVDVFLTADNEVVINEINTLPGFTNI 325 (364)
T ss_dssp -----SS-CHHHHHHHHHHHHHHHHHT---------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred -----CC-CHHHHHHHHHHHHHHHHHh---------------------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCC
Confidence 01 1445667777776666554 46688999999999999999999999999876
Q ss_pred Ccc
Q psy9480 343 GIV 345 (395)
Q Consensus 343 ~~~ 345 (395)
+.+
T Consensus 326 s~~ 328 (364)
T 3i12_A 326 SMY 328 (364)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 6
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.06 E-value=8.7e-10 Score=106.24 Aligned_cols=188 Identities=14% Similarity=0.208 Sum_probs=107.1
Q ss_pred ecccCCCCcccchHH-HHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH
Q psy9480 83 INHFPGMANLESKAF-LAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE 161 (395)
Q Consensus 83 vNh~p~~~~l~~K~~-L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~ 161 (395)
+|.......-..|-. +.++++.+.+.....++..|.|+. +. ..++ +.. .+-..|+||..|++|+|+.++++.+
T Consensus 102 iN~~~sI~~~~DK~~~~~~~~~~l~~~gi~~~P~~~~~~~-~~-~~~~---~~~-~g~PvVvK~~~Gs~G~GV~lv~~~~ 175 (309)
T 1i7n_A 102 INSLESIYNFCDKPWVFAQMVAIFKTLGGEKFPLIEQTYY-PN-HREM---LTL-PTFPVVVKIGHAHSGMGKVKVENHY 175 (309)
T ss_dssp ESCHHHHHHTSSHHHHHHHHHHHHHHHCTTTSCBCCCEEE-SS-GGGG---SSC-CCSSEEEEESSCSTTTTEEEECSHH
T ss_pred cCCHHHHHHhCCccHHHHHHHHHHHhCCCCCCCCCCEEee-CC-hhhh---hhc-cCCCEEEEeCCCCceeCeEEECCHH
Confidence 444333334456732 233333333333334456677775 42 2222 222 2458999999999999999999987
Q ss_pred HHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEecc-CCCCCCCCCCCCCcccee
Q psy9480 162 EARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLAT-CQYTSPETGNLTNQYMHL 233 (395)
Q Consensus 162 ~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~-~~y~~~~~~nl~~~~~HL 233 (395)
++.. ....+++|+||+ + .+|+|++|+ . +- + + ++.|.+. ..|.
T Consensus 176 ~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~Vv--G-g~--v-~---a~~Rr~~~g~wr-------------- 225 (309)
T 1i7n_A 176 DFQDIASVVALTQTYATAEPFID-A------KYDIRVQKI--G-NN--Y-K---AYMRTSISGNWK-------------- 225 (309)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEE--T-TE--E-E---EEEEESSCTTTS--------------
T ss_pred HHHHHHHHHhccCCeEEEEeecC-C------CceEEEEEE--C-CE--E-E---EEEEEcCCCCCe--------------
Confidence 7632 123467999996 2 699999998 2 22 1 1 3555553 3332
Q ss_pred cccccccCCCCCCCCCCCCC--ccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCC
Q psy9480 234 TNYSVNKSSENYNKSPERGS--KRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSA 311 (395)
Q Consensus 234 TN~~i~k~~~~~~~~~~~g~--~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 311 (395)
||.. ++. ...++ ++.++++.++..++ +
T Consensus 226 tN~~-------------~~~~e~~~l~-----------------~e~~~la~~A~~a~---------------------g 254 (309)
T 1i7n_A 226 TNTG-------------SAMLEQIAMS-----------------DRYKLWVDACSEMF---------------------G 254 (309)
T ss_dssp CSCC-------------CSSEEEECCC-----------------HHHHHHHHHHTTGG---------------------G
T ss_pred ecCC-------------cceeeecCCC-----------------HHHHHHHHHHHHHh---------------------C
Confidence 3321 111 11111 22333333322111 2
Q ss_pred ceEEEeeeEEecCCCceEEEEeeC--CCCCCCCCcch-HHHHHHHHHHH
Q psy9480 312 SFEILGFDILIDSTMKPFLLEVNR--SPSFNIAGIVD-ERVKRTLIYDT 357 (395)
Q Consensus 312 ~Fel~G~D~llD~~~kpwLLEVN~--~P~l~~~~~~d-~~vk~~li~d~ 357 (395)
...++|+|++.+++|+++++|||+ +|++......+ ..+...+++.+
T Consensus 255 Gldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~ 303 (309)
T 1i7n_A 255 GLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKM 303 (309)
T ss_dssp CCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHHHHHHHHHHHH
Confidence 468899999999999999999999 99998443332 33344444443
No 7
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.03 E-value=5.9e-09 Score=103.64 Aligned_cols=161 Identities=12% Similarity=0.146 Sum_probs=93.4
Q ss_pred ccCeeeccc------hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeecccccccc
Q psy9480 116 YPRSWSLPY------QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLM 182 (395)
Q Consensus 116 ~P~T~~Lp~------~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi 182 (395)
.|+++.+.. +..++...+ +-.+|+||..++.|.||.++++.+++.. ....++||+||+
T Consensus 174 ~p~~~~~~~~~~~~~~~~~~~~~l----g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~----- 244 (386)
T 3e5n_A 174 VAPFVCFDRHTAAHADVDTLIAQL----GLPLFVKPANQGSSVGVSQVRTADAFAAALALALAYDHKVLVEAAVA----- 244 (386)
T ss_dssp BCCEEEEEHHHHTTCCHHHHHHHH----CSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC-----
T ss_pred CCCEEEEeCcccchhhHHHHHHhc----CCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC-----
Confidence 577776642 233444433 3468999999999999999999888732 245699999996
Q ss_pred CCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHH
Q psy9480 183 DGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNS 262 (395)
Q Consensus 183 ~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~ 262 (395)
|+ ++++-|+... .+.+. .-|-+.....-|+. .. .| ..........+
T Consensus 245 -G~--E~~v~vl~~~--~~~~~--~~gei~~~~~~~d~------~~------ky---------~~~~~~~~~~P------ 290 (386)
T 3e5n_A 245 -GR--EIECAVLGNA--VPHAS--VCGEVVVHDAFYSY------AT------KY---------ISEHGAEIVIP------ 290 (386)
T ss_dssp -SE--EEEEEEECSS--SCEEE--EEEEECC--------------------------------------CEESS------
T ss_pred -Ce--EEEEEEEeCC--CceEE--EeEEEEeCCcccch------hc------cc---------CCCCCeEEEEC------
Confidence 64 4555555322 12221 11111111111110 00 00 00000000000
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCC
Q psy9480 263 WLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIA 342 (395)
Q Consensus 263 ~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~ 342 (395)
... .+.+.++|.+++.+++.++ +|..+.++||++|+++++|+||||+.|+++..
T Consensus 291 ----a~l-~~~~~~~i~~~a~~~~~aL---------------------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~ 344 (386)
T 3e5n_A 291 ----ADI-DAQTQQRIQQIAVQAYQAL---------------------GCAGMARVDVFLCADGRIVINEVNTLPGFTRI 344 (386)
T ss_dssp ----CSS-CHHHHHHHHHHHHHHHHHH---------------------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred ----CCC-CHHHHHHHHHHHHHHHHHh---------------------CCccEEEEEEEEECCCcEEEEEeECCCCCCcc
Confidence 001 2455667777777766554 46678899999999999999999999999987
Q ss_pred Ccc
Q psy9480 343 GIV 345 (395)
Q Consensus 343 ~~~ 345 (395)
+.+
T Consensus 345 S~~ 347 (386)
T 3e5n_A 345 SVY 347 (386)
T ss_dssp CHH
T ss_pred CHH
Confidence 644
No 8
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.03 E-value=5.9e-09 Score=102.57 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=93.6
Q ss_pred ccCeeeccchH------HHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeecccccccc
Q psy9480 116 YPRSWSLPYQQ------EDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLM 182 (395)
Q Consensus 116 ~P~T~~Lp~~~------~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi 182 (395)
.|+++.+...- +++.....+- +-.+|+||..|+.|+||.++++.+++.. ....++||+||+
T Consensus 144 ~p~~~~~~~~~~~~~~~~~~~~~~~~~-g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~----- 217 (364)
T 2i87_A 144 QLPYISFLRSEYEKYEHNILKLVNDKL-NYPVFVKPANLGSSVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN----- 217 (364)
T ss_dssp CCCEEEEEHHHHHHHHHHHHHHHHHHC-CSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC-----
T ss_pred CCCEEEEechhhcccchhHHHHHHHhc-CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc-----
Confidence 57888775321 1233323322 3468999999999999999999887732 245799999997
Q ss_pred CCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHH
Q psy9480 183 DGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNS 262 (395)
Q Consensus 183 ~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~ 262 (395)
|+ ++++.|+... ++ . +...|-+.....-|+. -.+|. ... .+...+.
T Consensus 218 -G~--E~~v~vl~~~-~~-~--~~~~~e~~~~~~~~~~------------~~k~~---------~g~-~~~~~pa----- 263 (364)
T 2i87_A 218 -AR--EIEVAVLGND-YP-E--ATWPGEVVKDVAFYDY------------KSKYK---------DGK-VQLQIPA----- 263 (364)
T ss_dssp -CE--EEEEEEEESS-SC-E--ECCCEEECCSCCC---------------------------------CCEESSC-----
T ss_pred -Ce--EEEEEEEcCC-Cc-E--EeeeEEEecCCCcCCH------------HHccc---------CCC-eeEEeCC-----
Confidence 54 6677776432 11 1 1111111111111111 01110 000 0000000
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCC
Q psy9480 263 WLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIA 342 (395)
Q Consensus 263 ~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~ 342 (395)
.. .+.+.++|.+++.+++.++ +|..++++||++|++|++||||||..|++...
T Consensus 264 -----~l-~~~~~~~i~~~a~~~~~al---------------------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~ 316 (364)
T 2i87_A 264 -----DL-DEDVQLTLRNMALEAFKAT---------------------DCSGLVRADFFVTEDNQIYINETNAMPGFTAF 316 (364)
T ss_dssp -----SS-CHHHHHHHHHHHHHHHHHT---------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTT
T ss_pred -----CC-CHHHHHHHHHHHHHHHHHc---------------------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCch
Confidence 01 1445667777777766554 45588999999999999999999999999765
Q ss_pred C
Q psy9480 343 G 343 (395)
Q Consensus 343 ~ 343 (395)
+
T Consensus 317 s 317 (364)
T 2i87_A 317 S 317 (364)
T ss_dssp S
T ss_pred h
Confidence 5
No 9
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.03 E-value=2e-09 Score=103.68 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=63.6
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCC-CcEEEEcCCCCCCC---CceEeeCChHHHhcc
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHP-HQVFISKPSRGAEG---KGIKIFNTLEEARGI 166 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~-~~~wIvKP~~gs~G---~GI~li~~~~~i~~~ 166 (395)
....|..+.+.+++.. --+|+|+.+. +.++....++..+ .-.+|+||..|+.| +|+.++.+.+++...
T Consensus 95 ~~~dK~~~~~~l~~~g-------i~~P~~~~~~-~~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~~ 166 (324)
T 1z2n_X 95 MMSSREEINALLIKNN-------IPIPNSFSVK-SKEEVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDI 166 (324)
T ss_dssp HHTBHHHHHHHHHHTT-------CCCSCEEEES-SHHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTTC
T ss_pred HHhCHHHHHHHHHHCC-------CCCCCEEEeC-CHHHHHHHHHHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhhc
Confidence 4456777766665421 1368888875 3344444444321 24799999999999 999999998888555
Q ss_pred cCcceeeeccccccccCCceeeeEEEEE
Q psy9480 167 YTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 167 ~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
..++++|+||+. ..+|+|++|+
T Consensus 167 ~~~~lvqe~i~~------~g~~~~v~v~ 188 (324)
T 1z2n_X 167 HFPCLCQHYINH------NNKIVKVFCI 188 (324)
T ss_dssp CSSEEEEECCCC------TTCEEEEEEE
T ss_pred CCCEEEEEccCC------CCcEEEEEEE
Confidence 667999999973 2389999886
No 10
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.03 E-value=1.2e-08 Score=97.04 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=101.7
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHH--------HHHcCCCcEEEEcCCCCCCCCceEeeCChHHH
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLS--------YVREHPHQVFISKPSRGAEGKGIKIFNTLEEA 163 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~--------~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i 163 (395)
...|..+.+.+++.. --+|+|+.+... ++.+ ...+ -+-.+|+||..|+.|+|+.++++.+++
T Consensus 94 ~~dK~~~~~~l~~~g-------i~~p~~~~~~~~--~~~~~~~~~~~~~~~~-~~~p~vvKP~~g~~~~gv~~v~~~~el 163 (306)
T 1iow_A 94 SMDKLRSKLLWQGAG-------LPVAPWVALTRA--EFEKGLSDKQLAEISA-LGLPVIVKPSREGSSVGMSKVVAENAL 163 (306)
T ss_dssp HHCHHHHHHHHHHTT-------CCBCCEEEEEHH--HHHHCCCTHHHHHHHT-TCSSEEEEETTCCTTTTCEEESSGGGH
T ss_pred HcCHHHHHHHHHHCC-------CCCCCeEEEchh--hhhccchhhhhhHHhc-cCCCEEEEeCCCCCCCCEEEeCCHHHH
Confidence 457777666665421 127888877533 3333 3333 234799999999999999999998876
Q ss_pred hc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceeccc
Q psy9480 164 RG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNY 236 (395)
Q Consensus 164 ~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~ 236 (395)
.. ....++||+||+ |+ ++|+.++ . + +++ +.++.... ...-+. -+|+
T Consensus 164 ~~~~~~~~~~~~~~lvee~i~------g~--e~~v~~~--~-g--~~~----~~~~~~~~-------~~~~~~---~~~~ 216 (306)
T 1iow_A 164 QDALRLAFQHDEEVLIEKWLS------GP--EFTVAIL--G-E--EIL----PSIRIQPS-------GTFYDY---EAKF 216 (306)
T ss_dssp HHHHHHHTTTCSEEEEEECCC------CC--EEEEEEE--T-T--EEC----CCEEEECS-------SSSSCH---HHHH
T ss_pred HHHHHHHHhhCCCEEEEeCcC------CE--EEEEEEE--C-C--Ccc----ceEEEEeC-------CCeEch---hhee
Confidence 32 245799999996 54 6777766 1 1 111 01111110 000000 0122
Q ss_pred ccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEE
Q psy9480 237 SVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEIL 316 (395)
Q Consensus 237 ~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~ 316 (395)
.... .+...+. .. .+.+.+++.+++.+++.++ ++...+
T Consensus 217 ~~g~----------~~~~~p~----------~l-~~~~~~~i~~~a~~~~~~l---------------------g~~G~~ 254 (306)
T 1iow_A 217 LSDE----------TQYFCPA----------GL-EASQEANLQALVLKAWTTL---------------------GCKGWG 254 (306)
T ss_dssp TCSC----------CEEESSC----------CC-CHHHHHHHHHHHHHHHHHH---------------------TCCSEE
T ss_pred cCCC----------eeEEcCC----------CC-CHHHHHHHHHHHHHHHHHc---------------------CCceEE
Confidence 1000 0000000 01 1345566777766665544 356788
Q ss_pred eeeEEecCCCceEEEEeeCCCCCCCCC
Q psy9480 317 GFDILIDSTMKPFLLEVNRSPSFNIAG 343 (395)
Q Consensus 317 G~D~llD~~~kpwLLEVN~~P~l~~~~ 343 (395)
|+||++|++|++|+||||..|+....+
T Consensus 255 ~vD~~~~~~g~~~~iEiN~rpg~~~~s 281 (306)
T 1iow_A 255 RIDVMLDSDGQFYLLEANTSPGMTSHS 281 (306)
T ss_dssp EEEEEECTTSCEEEEEEESSCCCSTTC
T ss_pred EEEEEEcCCCCEEEEEecCCCCCCCCC
Confidence 999999999999999999999997654
No 11
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.03 E-value=7.3e-09 Score=102.48 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=83.7
Q ss_pred CcE-EEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcce
Q psy9480 138 HQV-FISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNG 209 (395)
Q Consensus 138 ~~~-wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g 209 (395)
+-. +|+||..++.|.||.++++.+++.. ....++||+||+ |+. +++-|+... .+ .+ ..-+
T Consensus 179 g~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~E--~~v~vl~~~-~~-~~--~~~~ 246 (372)
T 3tqt_A 179 GTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR------GRE--IECAVLGNG-AP-KA--SLPG 246 (372)
T ss_dssp ---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC------SEE--EEEEEEESS-SC-EE--CCCE
T ss_pred CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC------CEE--EEEEEEeCC-Cc-eE--eeeE
Confidence 345 9999999999999999999888732 245699999996 654 555555332 11 11 1111
Q ss_pred EEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCC-CccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q psy9480 210 LVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERG-SKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIIS 288 (395)
Q Consensus 210 ~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g-~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a 288 (395)
-+.....-|+- . ..| .. ++ ...... ... .+.+.++|.+++.+++.+
T Consensus 247 ei~~~~~~~d~------~------~ky---------~~---g~~~~~~~P--------a~l-~~~~~~~i~~~a~~~~~a 293 (372)
T 3tqt_A 247 EIIPHHDYYSY------D------AKY---------LD---PNGATTTTS--------VDL-SESVTKQIQQIAIDAFKM 293 (372)
T ss_dssp EEECC---------------------------------------CEEESC--------CCC-CHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCccch------h------hcc---------cC---CCceEEEeC--------CCC-CHHHHHHHHHHHHHHHHH
Confidence 11111111111 0 000 00 00 000000 001 245667777777776655
Q ss_pred HchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 289 VYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+ +|..+.++||++|+++++|+||||+.|+|+..+.+
T Consensus 294 L---------------------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 294 V---------------------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMY 329 (372)
T ss_dssp T---------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred h---------------------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHH
Confidence 4 56788999999999999999999999999977644
No 12
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.02 E-value=6.3e-10 Score=108.61 Aligned_cols=191 Identities=12% Similarity=0.191 Sum_probs=107.8
Q ss_pred ecccCCCCcccchHH-HHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH
Q psy9480 83 INHFPGMANLESKAF-LAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE 161 (395)
Q Consensus 83 vNh~p~~~~l~~K~~-L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~ 161 (395)
+|.......-..|-. +.++++.+.+.....++..|.|+. +. ..++ +. ..+-..|+||..|++|+|+.++++.+
T Consensus 119 iN~~~sI~~~~DK~~v~~~~l~~l~~~gi~~~P~~~~t~~-~~-~~~~---~~-~~g~PvVvK~~~Gs~G~GV~lve~~~ 192 (344)
T 2p0a_A 119 VNSLYSVYNFCSKPWVFSQLIKIFHSLGPEKFPLVEQTFF-PN-HKPM---VT-APHFPVVVKLGHAHAGMGKIKVENQL 192 (344)
T ss_dssp ESCHHHHHHTTCHHHHHHHHHHHHHHHCTTTSCBCCCEEE-SS-STTC---CC-CSSSSEEEEESSCCTTTTEEEECSHH
T ss_pred cCCHHHHHhhCCchHHHHHHHHHHHHCCCCCCCCCCEEec-Cc-hhhh---hh-ccCCCEEEEeCCCCceeCeEEECCHH
Confidence 444333334456722 223333333332233455666764 42 2222 11 22447999999999999999999988
Q ss_pred HHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEec-cCCCCCCCCCCCCCcccee
Q psy9480 162 EARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLA-TCQYTSPETGNLTNQYMHL 233 (395)
Q Consensus 162 ~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a-~~~y~~~~~~nl~~~~~HL 233 (395)
++.. ....+++|+||+ + .+|||++|+ -+- ++ ++.|.+ ...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~vQefI~-~------g~DiRv~VV---Gg~---vv---a~~R~~~~g~wr-------------- 242 (344)
T 2p0a_A 193 DFQDITSVVAMAKTYATTEAFID-S------KYDIRIQKI---GSN---YK---AYMRTSISGNWK-------------- 242 (344)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCC-E------EEEEEEEEE---TTE---EE---EEEEEESSSCSS--------------
T ss_pred HHHHHHHHHhccCCeEEEEeccC-C------CccEEEEEE---CCE---EE---EEEEecCCCCCe--------------
Confidence 7632 123467999996 2 699999998 222 11 345555 33343
Q ss_pred cccccccCCCCCCCCCCCCC--ccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCC
Q psy9480 234 TNYSVNKSSENYNKSPERGS--KRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSA 311 (395)
Q Consensus 234 TN~~i~k~~~~~~~~~~~g~--~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 311 (395)
||.. ++. ...+ -++.++++.++..++ +
T Consensus 243 tN~~-------------~~~~e~~~l-----------------~~e~~~la~~Aa~a~---------------------g 271 (344)
T 2p0a_A 243 ANTG-------------SAMLEQVAM-----------------TERYRLWVDSCSEMF---------------------G 271 (344)
T ss_dssp TTSS-------------SEEEEEECC-----------------CHHHHHHHHHHTTGG---------------------G
T ss_pred ecCC-------------ceEEEeeCC-----------------CHHHHHHHHHHHHHh---------------------C
Confidence 3321 010 1111 122333433322111 2
Q ss_pred ceEEEeeeEEecCCCceEEEEeeC--CCCCCCCCcc-hHHHHHHHHHHHhhh
Q psy9480 312 SFEILGFDILIDSTMKPFLLEVNR--SPSFNIAGIV-DERVKRTLIYDTFKI 360 (395)
Q Consensus 312 ~Fel~G~D~llD~~~kpwLLEVN~--~P~l~~~~~~-d~~vk~~li~d~~~l 360 (395)
...++|+|++.+++|+++++|||+ +|++...... ...+...+++.+-+.
T Consensus 272 Gldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~ 323 (344)
T 2p0a_A 272 GLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQL 323 (344)
T ss_dssp CCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999 9999743322 334444555554443
No 13
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.01 E-value=1.4e-08 Score=99.02 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=85.6
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEE
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLV 211 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~v 211 (395)
-.+|+||..++.|+||.++++.+++.. ....++||+||+ |+ ++++.++....+ ..+ ..-+-+
T Consensus 166 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~------G~--E~~v~vl~~~~~-~~~--~~~~ei 234 (343)
T 1e4e_A 166 YPVFVKPARSGSSFGVKKVNSADELDYAIESARQYDSKILIEQAVS------GC--EVGCAVLGNSAA-LVV--GEVDQI 234 (343)
T ss_dssp SCEEEEESSCCTTTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC------SE--EEEEEEEEETTC-CEE--CCCEEE
T ss_pred CCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC------Ce--EEEEEEEeCCCC-eEE--eeeEEE
Confidence 469999999999999999999887632 245799999996 65 556666644322 111 111111
Q ss_pred EeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCC--ccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q psy9480 212 RLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGS--KRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISV 289 (395)
Q Consensus 212 R~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~--~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~ 289 (395)
.....-|+. . ++|.-. ... ++. ..+. .. .+.+.++|.+++.+++.++
T Consensus 235 ~~~~~~~~~---------~---~k~~~~-----~~~---g~~~~~~p~----------~l-~~~~~~~i~~~a~~~~~al 283 (343)
T 1e4e_A 235 RLQYGIFRI---------H---QEVEPE-----KGS---ENAVITVPA----------DL-SAEERGRIQETVKKIYKTL 283 (343)
T ss_dssp EESSSCCCG---------G---GSSSGG-----GCC---SSEEECSSC----------SS-CHHHHHHHHHHHHHHHHHT
T ss_pred eeCCCccCH---------h---hccccc-----CCC---CCeeEEeCC----------CC-CHHHHHHHHHHHHHHHHHc
Confidence 111111111 0 111000 000 000 0000 01 1345667777777666554
Q ss_pred chHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCC
Q psy9480 290 YPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAG 343 (395)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~ 343 (395)
++...+++||++|+++++|+||||+.|++...+
T Consensus 284 ---------------------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s 316 (343)
T 1e4e_A 284 ---------------------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYS 316 (343)
T ss_dssp ---------------------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred ---------------------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCccc
Confidence 467899999999999999999999999998655
No 14
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.00 E-value=5.1e-09 Score=104.00 Aligned_cols=163 Identities=10% Similarity=0.082 Sum_probs=84.8
Q ss_pred ccCeeeccch--H-HHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCc
Q psy9480 116 YPRSWSLPYQ--Q-EDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGF 185 (395)
Q Consensus 116 ~P~T~~Lp~~--~-~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~gr 185 (395)
.|+++.+... . +++...... -+-.+|+||..++.|.||.++++.+++.. ....++||+||+ |+
T Consensus 177 vp~~~~~~~~~~~~~~~~~~~~~-lg~PvvVKP~~ggss~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~------G~ 249 (383)
T 3k3p_A 177 QVAYVALIEGEPLESKLAEVEEK-LIYPVFVKPANMGSSVGISKAENRTDLKQAIALALKYDSRVLIEQGVD------AR 249 (383)
T ss_dssp BCCEEEEETTSCHHHHHHHHHHH-CCSSEEEEECC------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC------SE
T ss_pred CCCEEEEeCccchhHHHHHHHHh-cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC------Ce
Confidence 5677766432 1 233333322 23468999999999999999999888742 245699999996 65
Q ss_pred eeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHH
Q psy9480 186 KFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLL 265 (395)
Q Consensus 186 KFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~ 265 (395)
. +++-|+.. +...++...+ +.....-|+- . ..| .... .....+.
T Consensus 250 E--~~v~vl~d--~~~~~~~~~e--i~~~~~~~d~------~------~ky---------~~g~-~~~~~Pa-------- 293 (383)
T 3k3p_A 250 E--IEVGILGN--TDVKTTLPGE--IVKDVAFYDY------E------AKY---------IDNK-ITMAIPA-------- 293 (383)
T ss_dssp E--EEEEEEES--SSCEECCCEE--EC---------------------------------------CEESSC--------
T ss_pred E--EEEEEEeC--CCeeEEeeEE--EecCCCccch------h------hcc---------cCCC-eeEEecC--------
Confidence 4 44455532 2222110000 0000000110 0 000 0000 0000000
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 266 SQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 266 ~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
.. .+.+.++|.+++.+++.++ +|-.+.++||++|+++++|+||||+.|+++..+.+
T Consensus 294 --~l-~~~~~~~i~~~a~~~~~aL---------------------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~ 349 (383)
T 3k3p_A 294 --EI-DPVIVEKMRDYAATAFRTL---------------------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSMY 349 (383)
T ss_dssp --CC-CHHHHHHHHHHHHHHHHHT---------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CHH
T ss_pred --CC-CHHHHHHHHHHHHHHHHHc---------------------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccHH
Confidence 01 2455667777776666554 46688999999999999999999999999976643
No 15
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.00 E-value=3.7e-09 Score=105.26 Aligned_cols=159 Identities=13% Similarity=0.187 Sum_probs=96.2
Q ss_pred CCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCC
Q psy9480 112 DYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDG 184 (395)
Q Consensus 112 ~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~g 184 (395)
.++..|.|+. +...+ +. . ..+-..|+||..|++|+|+.++++.+++.. ....+++|+||+ +
T Consensus 244 ~iP~t~~t~~-~~~~~-~i---~-~~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~----- 311 (422)
T 1pk8_A 244 EFPLIDQTFY-PNHKE-ML---S-STTYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-A----- 311 (422)
T ss_dssp TSCBCCCEEE-SSGGG-CC---C-CSSSSEEEEESSCCTTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-E-----
T ss_pred CCCCCceEec-Cchhh-hh---h-ccCCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-C-----
Confidence 3355667774 43322 21 1 224479999999999999999999887632 123467999996 2
Q ss_pred ceeeeEEEEEEecccCceEEEEcceEEEecc-CCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCC--ccChHHHH
Q psy9480 185 FKFDLRVYVLITCIDPLRIFVYNNGLVRLAT-CQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGS--KRDFTALN 261 (395)
Q Consensus 185 rKFDlRvyvlvts~~pl~vy~~~~g~vR~a~-~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~--~~~l~~l~ 261 (395)
++|||++|+ -+- ++ ++.|.+. ..|. ||.. ++. ...+
T Consensus 312 -g~DIRv~VV---Gg~---vv---a~~Rr~~~g~Wr--------------tNvg-------------~g~~e~i~l---- 350 (422)
T 1pk8_A 312 -KYDVRVQKI---GQN---YK---AYMRTSVSGNWK--------------TNTG-------------SAMLEQIAM---- 350 (422)
T ss_dssp -EEEEEEEEE---TTE---EE---EEEEEESSSCSS--------------TTSS-------------CEEEEEECC----
T ss_pred -CceEEEEEE---CCE---EE---EEEEEcCCCCce--------------eccC-------------ceeeeeeCC----
Confidence 699999998 222 11 3555553 3343 3321 010 1111
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeC--CCCC
Q psy9480 262 SWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNR--SPSF 339 (395)
Q Consensus 262 ~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~--~P~l 339 (395)
-+++++++.++..++ +...++|+|++.+++|++++||||+ +|++
T Consensus 351 -------------t~e~~elA~kAaka~---------------------gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~ 396 (422)
T 1pk8_A 351 -------------SDRYKLWVDTCSEIF---------------------GGLDICAVEALHGKDGRDHIIEVVGSSMPLI 396 (422)
T ss_dssp -------------CHHHHHHHHHHTTGG---------------------GCCSEEEEEEEEETTSCEEEEEEECTTCCCC
T ss_pred -------------CHHHHHHHHHHHHHh---------------------CCCCEEEEEEEEcCCCCEEEEEECCCCCCCc
Confidence 122333443332221 2468899999999999999999999 9999
Q ss_pred CCCCcch-HHHHHHHHHHH
Q psy9480 340 NIAGIVD-ERVKRTLIYDT 357 (395)
Q Consensus 340 ~~~~~~d-~~vk~~li~d~ 357 (395)
......+ ..+...+++.+
T Consensus 397 ~g~~~~~~~~IA~~ii~~i 415 (422)
T 1pk8_A 397 GDHQDEDKQLIVELVVNKM 415 (422)
T ss_dssp TTCHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHH
Confidence 8444333 33344444443
No 16
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.00 E-value=8.6e-09 Score=100.73 Aligned_cols=146 Identities=14% Similarity=0.110 Sum_probs=85.3
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEE
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLV 211 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~v 211 (395)
-.+|+||..++.|.||.++++.+++.. ....++||+||+ |+ ++++.++.....+ .+ ..-+-.
T Consensus 166 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~--E~~v~vl~~~~~~-~~--~~~~e~ 234 (346)
T 3se7_A 166 YPVFVKPARSGSSFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI------GT--EIGCAVMGNGPEL-IT--GEVDQI 234 (346)
T ss_dssp SSEEEEESSCCTTTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC------SE--EEEEEEEEETTEE-EE--CCCEEE
T ss_pred CCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC------CE--EEEEEEEecCCCe-EE--EeeEEE
Confidence 368999999999999999999888732 245699999996 64 6666666443211 11 000000
Q ss_pred EeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHch
Q psy9480 212 RLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYP 291 (395)
Q Consensus 212 R~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~ 291 (395)
.....-|+ | .+.....|.... .+...+. .. .+.+.++|.+++.+++.++
T Consensus 235 ~~~~~~~d----------------~-~q~~~~ky~~~~-~~~~~pa----------~l-~~~~~~~i~~~a~~~~~~l-- 283 (346)
T 3se7_A 235 TLSHGFFK----------------I-HQESTPESGSDN-SAVTVPA----------DI-STTSRSLVQDTAKAVYRAL-- 283 (346)
T ss_dssp CCC-------------------------------CGGG-SCEESSC----------CC-CHHHHHHHHHHHHHHHHHH--
T ss_pred ecCCCCcC----------------c-ccchhccccCCC-eeEEeCC----------CC-CHHHHHHHHHHHHHHHHHh--
Confidence 00000010 0 000000010000 0000000 01 2455667777777766554
Q ss_pred HHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 292 ILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+|....++||++|+++++|+||||+.|+++..+.+
T Consensus 284 -------------------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~ 318 (346)
T 3se7_A 284 -------------------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRY 318 (346)
T ss_dssp -------------------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHH
T ss_pred -------------------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHH
Confidence 46688999999999999999999999999876643
No 17
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.90 E-value=1.1e-08 Score=99.10 Aligned_cols=137 Identities=18% Similarity=0.186 Sum_probs=82.4
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCC-ceeeeEEEEEEecccCceEEEEcceE
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDG-FKFDLRVYVLITCIDPLRIFVYNNGL 210 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~g-rKFDlRvyvlvts~~pl~vy~~~~g~ 210 (395)
-.+|+||..|+.|.|+.++++.+++.. ....++||+||+ | + ++++.|+... ++ .+. ..|-
T Consensus 151 ~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~------G~~--E~~v~vl~~~-~~-~~~--~~~e 218 (322)
T 2fb9_A 151 PPFFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALS------PVR--ELEVGVLGNV-FG-EAS--PVGE 218 (322)
T ss_dssp SCEEEEETTCCTTTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS------SCE--EEEEEEESSS-SC-EEE--EEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC------CCe--eEEEEEEeCC-Cc-eEe--eeEE
Confidence 479999999999999999999887732 235699999997 5 4 5555555321 11 110 0111
Q ss_pred EEeccCCCCCCCCCCC-CCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q psy9480 211 VRLATCQYTSPETGNL-TNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISV 289 (395)
Q Consensus 211 vR~a~~~y~~~~~~nl-~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~ 289 (395)
+.....-|+.. .+. .+...|.+.. .. .+.+.+++++++.+++.++
T Consensus 219 i~~~~~~~~~~--~k~~~g~~~~~~Pa-------------------------------~l-~~~~~~~i~~~a~~~~~al 264 (322)
T 2fb9_A 219 VRYEAPFYDYE--TKYTPGRAELLIPA-------------------------------PL-DPGTQETVQELALKAYKVL 264 (322)
T ss_dssp EEEECCEEETT--TEEECCEEEEESSC-------------------------------CC-CTTHHHHHHHHHHHHHHHH
T ss_pred EeeCCCccCHH--HcccCCCeEEEeCC-------------------------------CC-CHHHHHHHHHHHHHHHHHh
Confidence 11111111110 000 0000000000 01 1345567777777766554
Q ss_pred chHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCC
Q psy9480 290 YPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAG 343 (395)
Q Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~ 343 (395)
+|....++||++| ++++|+||||..|++...+
T Consensus 265 ---------------------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 265 ---------------------GVRGMARVDFFLA-EGELYLNELNTIPGFTPTS 296 (322)
T ss_dssp ---------------------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSC
T ss_pred ---------------------CCceEEEEEEEEE-CCcEEEEEEECCCCCCccc
Confidence 4558889999999 9999999999999998765
No 18
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.88 E-value=2.9e-09 Score=99.83 Aligned_cols=89 Identities=17% Similarity=0.104 Sum_probs=58.5
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG----- 165 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~----- 165 (395)
....|..+.+.+++.. . -+|+|+.+.. .+++.+.+++. +-.+|+||..|+.|+|+.++++.+++..
T Consensus 85 ~~~dK~~~~~~l~~~g--i-----~~p~~~~~~~-~~~~~~~~~~~-~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~ 155 (280)
T 1uc8_A 85 ACGDKWATSVALAKAG--L-----PQPKTALATD-REEALRLMEAF-GYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXK 155 (280)
T ss_dssp HHHBHHHHHHHHHHTT--C-----CCCCEEEESS-HHHHHHHHHHH-CSSEEEECSBCCBCSHHHHHHHHHC--------
T ss_pred HhCCHHHHHHHHHHcC--c-----CCCCeEeeCC-HHHHHHHHHHh-CCCEEEEECCCCCcccceecccccccchhhhhH
Confidence 3457777666665421 1 2588887752 33333333321 3368999999999999999987766521
Q ss_pred ----c--cCcceeeeccccccccCCceeeeEEEEE
Q psy9480 166 ----I--YTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 166 ----~--~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
. ...++||+||+ |..+++|++++
T Consensus 156 ~~~~~~~~~~~lvqe~i~------~~~~e~~v~v~ 184 (280)
T 1uc8_A 156 EVLGGFQHQLFYIQEYVE------KPGRDIRVFVV 184 (280)
T ss_dssp ----CTTTTCEEEEECCC------CSSCCEEEEEE
T ss_pred hhhcccCCCcEEEEeccC------CCCceEEEEEE
Confidence 1 35699999997 35689999886
No 19
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.88 E-value=9.1e-08 Score=94.63 Aligned_cols=180 Identities=14% Similarity=0.167 Sum_probs=101.0
Q ss_pred ccCeeeccch------HHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeecccccccc
Q psy9480 116 YPRSWSLPYQ------QEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLM 182 (395)
Q Consensus 116 ~P~T~~Lp~~------~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi 182 (395)
.|+++.+... ..++...+ +-.+|+||..++.|+||.++++.+++.. ....++||+||+
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~~~~~----g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~----- 220 (377)
T 1ehi_A 150 NTKYIVVDPESANNWSWDKIVAEL----GNIVFVKAANQGSSVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN----- 220 (377)
T ss_dssp CCCEEEECTTGGGGCCHHHHHHHH----CSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-----
T ss_pred CCCEEEEeccccchHHHHHHHHhc----CCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC-----
Confidence 5777766422 33443333 3468999999999999999999887732 235799999997
Q ss_pred CC-ceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHH
Q psy9480 183 DG-FKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALN 261 (395)
Q Consensus 183 ~g-rKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~ 261 (395)
| + ++++.|+... ++ .+. .-+-+.... .+. ...+-+.. .+|. .....+...+.
T Consensus 221 -G~~--E~~v~vl~~~-~~-~~~--~~~ei~~~~--~~~--~~~~~d~~---~k~~---------~g~~~~~~~Pa---- 273 (377)
T 1ehi_A 221 -GAR--ELEVGVIGND-QP-LVS--EIGAHTVPN--QGS--GDGWYDYN---NKFV---------DNSAVHFQIPA---- 273 (377)
T ss_dssp -CSC--EEEEEEEESS-SC-EEE--EEEEEECTT--SSS--SSCCCCHH---HHTT---------CCTTCEEESSC----
T ss_pred -CCc--eEEEEEEcCC-Cc-EEE--eeEEEEecC--CCC--cCceeCHH---hccc---------CCCCeeEEeCC----
Confidence 4 4 5666666432 12 211 111111110 000 00010000 0110 00000000000
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCC
Q psy9480 262 SWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNI 341 (395)
Q Consensus 262 ~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~ 341 (395)
.. .+.+.++|.+++.+++.++ +|..+.++||++|+++++||||||..|++..
T Consensus 274 ------~l-~~~~~~~i~~~a~~~~~al---------------------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~ 325 (377)
T 1ehi_A 274 ------QL-SPEVTKEVKQMALDAYKVL---------------------NLRGEARMDFLLDENNVPYLGEPNTLPGFTN 325 (377)
T ss_dssp ------CC-CHHHHHHHHHHHHHHHHHT---------------------TCCEEEEEEEEECTTCCEEEEEEESSCCCST
T ss_pred ------CC-CHHHHHHHHHHHHHHHHHc---------------------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCc
Confidence 01 1445667777777666554 4668999999999999999999999999876
Q ss_pred CCcc----------hHHHHHHHHHHHhh
Q psy9480 342 AGIV----------DERVKRTLIYDTFK 359 (395)
Q Consensus 342 ~~~~----------d~~vk~~li~d~~~ 359 (395)
.+.+ -.++...+++.++.
T Consensus 326 ~s~~p~~~~a~G~~~~~l~~~li~~al~ 353 (377)
T 1ehi_A 326 MSLFKRLWDYSDINNAKLVDMLIDYGFE 353 (377)
T ss_dssp TCGGGTGGGGGTCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5421 23445556655553
No 20
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.87 E-value=1.6e-08 Score=96.69 Aligned_cols=172 Identities=18% Similarity=0.217 Sum_probs=94.3
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccc--hHH-HHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc---
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPY--QQE-DFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG--- 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~--~~~-~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~--- 165 (395)
...|..+.+.+++.. --+|+|+.+.. +.. ++...+ +-.+|+||..|+.|+||.++++.+++..
T Consensus 95 ~~dK~~~~~~l~~~G-------ip~p~~~~~~~~~~~~~~~~~~~----~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~ 163 (307)
T 3r5x_A 95 CMDKNISKKILRYEG-------IETPDWIELTKMEDLNFDELDKL----GFPLVVKPNSGGSSVGVKIVYDKDELISMLE 163 (307)
T ss_dssp HHCHHHHHHHHHHTT-------CCCCCEEEEESSSCCCHHHHHHH----CSSEEEEECC----CCCEEECSHHHHHHHHH
T ss_pred HcCHHHHHHHHHHCC-------CCCCCEEEEeChhhhhHHHHHhc----CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHH
Confidence 346666665554321 12677777642 222 244433 3468999999999999999999887632
Q ss_pred ----ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccC
Q psy9480 166 ----IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKS 241 (395)
Q Consensus 166 ----~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~ 241 (395)
....++||+||+ |+ ++++.++ .. ..+.+ +.+.....-|+- -++|..
T Consensus 164 ~~~~~~~~~lvee~i~------G~--e~~v~v~-~g-~~~~~-----~~~~~~~~~~~~------------~~~~~~--- 213 (307)
T 3r5x_A 164 TVFEWDSEVVIEKYIK------GE--EITCSIF-DG-KQLPI-----ISIRHAAEFFDY------------NAKYDD--- 213 (307)
T ss_dssp HHHHHCSEEEEEECCC------SE--EEEEEEE-TT-EECCC-----EEEEEEEEEETT------------EEEEEE---
T ss_pred HHHhcCCCEEEECCcC------CE--EEEEEEE-CC-EEeeE-----EEEEcCCcccCh------------hhcCCC---
Confidence 246799999997 54 6676663 22 11000 000000110110 011100
Q ss_pred CCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEE
Q psy9480 242 SENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDIL 321 (395)
Q Consensus 242 ~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~l 321 (395)
.|..... ... .+.+.++|.+++.+++.++ ++....++||+
T Consensus 214 ---------~g~~~~p---------~~l-~~~~~~~i~~~a~~~~~~l---------------------g~~G~~~vD~~ 253 (307)
T 3r5x_A 214 ---------ASTIEEV---------IEL-PAELKERVNKASLACYKAL---------------------KCSVYARVDMM 253 (307)
T ss_dssp ---------EEEEEEE---------CCC-CHHHHHHHHHHHHHHHHHT---------------------TCCSEEEEEEE
T ss_pred ---------CCCeEec---------CCC-CHHHHHHHHHHHHHHHHHh---------------------CCCceEEEEEE
Confidence 0000000 001 1345566666666665544 34467899999
Q ss_pred ecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 322 IDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 322 lD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+| ++++|+||||..|++...+.+
T Consensus 254 ~~-~g~~~vlEiN~rpg~~~~s~~ 276 (307)
T 3r5x_A 254 VK-DGIPYVMEVNTLPGMTQASLL 276 (307)
T ss_dssp EE-TTEEEEEEEESSCCCSTTSHH
T ss_pred EE-CCeEEEEEEcCCCCCCccCHH
Confidence 99 699999999999999876543
No 21
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.82 E-value=6.7e-08 Score=95.54 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=86.1
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGL 210 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~ 210 (395)
+-.+|+||..++.|.||.++++.+++.. ....++||+||+ |+ ++++-|+.... ..+.+..-+-
T Consensus 188 g~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~------G~--E~~v~vl~~~~--~~~~~~~~~e 257 (373)
T 3lwb_A 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS------GR--ELECGVLEMPD--GTLEASTLGE 257 (373)
T ss_dssp CSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE------EE--EEEEEEEECTT--SCEEECCCEE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC------Ce--EEEEEEEECCC--CceEEeeeeE
Confidence 3468999999999999999999888732 245799999997 54 45555553321 1111111122
Q ss_pred EEec--cCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q psy9480 211 VRLA--TCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIIS 288 (395)
Q Consensus 211 vR~a--~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a 288 (395)
++.. ... . ..+-++. ++|.- ++..... -..-.+.+.++|++++.+++.+
T Consensus 258 i~~~~~~~~-~----~~~~d~~---~ky~~------------~~~~~~~---------Pa~l~~~~~~~i~~~a~~~~~a 308 (373)
T 3lwb_A 258 IRVAGVRGR-E----DSFYDFA---TKYLD------------DAAELDV---------PAKVDDQVAEAIRQLAIRAFAA 308 (373)
T ss_dssp EECCSTTCS-E----ESSSCHH---HHHTC------------TTCEEES---------SCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEccCCCCc-c----ccccchh---hcccC------------CCceEEe---------CCCCCHHHHHHHHHHHHHHHHH
Confidence 2221 110 0 0000000 11100 0000000 0001245667777777776655
Q ss_pred HchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCcc
Q psy9480 289 VYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGIV 345 (395)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~~ 345 (395)
+ +|..+.++||++|++++ ||+|||+.|+++..+.+
T Consensus 309 L---------------------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~ 343 (373)
T 3lwb_A 309 I---------------------DCRGLARVDFFLTDDGP-VINEINTMPGFTTISMY 343 (373)
T ss_dssp T---------------------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSHH
T ss_pred h---------------------CCccEEEEEEEEECCCC-EEEEecCCCCCCcccHH
Confidence 4 46688999999999999 99999999999876643
No 22
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.77 E-value=1.3e-07 Score=93.20 Aligned_cols=166 Identities=14% Similarity=0.189 Sum_probs=96.3
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCC-CCCceEeeCChHHHhccc-Cc
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGA-EGKGIKIFNTLEEARGIY-TE 169 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs-~G~GI~li~~~~~i~~~~-~~ 169 (395)
...|..+.+.+++.. . -.|+++.+.. .+++ +++ -+-.+|+||..|+ .|+|+.++++.+++.... ..
T Consensus 98 ~~dK~~~~~~l~~~g--i-----p~p~~~~~~~-~~~~---~~~-~~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~~~ 165 (380)
T 3ax6_A 98 IQDKFVQKEFLKKNG--I-----PVPEYKLVKD-LESD---VRE-FGFPVVQKARKGGYDGRGVFIIKNEKDLENAIKGE 165 (380)
T ss_dssp HHSHHHHHHHHHHTT--C-----CCCCEEECSS-HHHH---HHT-TCSSEEEEESCCC-----EEEECSGGGGGGCCCSS
T ss_pred hcCHHHHHHHHHHcC--C-----CCCCeEEeCC-HHHH---HHh-cCCCEEEEecCCCCCCCCeEEECCHHHHHHHhcCC
Confidence 456666665554321 1 2577776653 3332 222 2347999999999 999999999998884322 67
Q ss_pred ceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCC-CCCCCCCCCCccceecccccccCCCCCCCC
Q psy9480 170 SVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQY-TSPETGNLTNQYMHLTNYSVNKSSENYNKS 248 (395)
Q Consensus 170 ~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y-~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~ 248 (395)
++||+||+. -.++++.++....+...++-.. +.+ .. .....+ .+.+-
T Consensus 166 ~lvEe~i~~-------g~e~sv~~~~~~~G~~~~~~~~--------~~~~~~--~~~~~~--~~~~p------------- 213 (380)
T 3ax6_A 166 TYLEEFVEI-------EKELAVMVARNEKGEIACYPVV--------EMYFDE--DANICD--TVIAP------------- 213 (380)
T ss_dssp EEEEECCCE-------EEEEEEEEEECSSCCEEEEEEE--------EEC----------C--EEEES-------------
T ss_pred EEEEeccCC-------CeeEEEEEEECCCCCEEEECCe--------eeeecc--cCCeeE--EEECC-------------
Confidence 999999972 2577777775432222222111 111 00 000000 00000
Q ss_pred CCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCce
Q psy9480 249 PERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKP 328 (395)
Q Consensus 249 ~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kp 328 (395)
. .. .+.+.+++.+++.+++.++ ++...+++||++|++|++
T Consensus 214 ----~--------------~l-~~~~~~~~~~~a~~~~~~l---------------------g~~G~~~vd~~~~~~g~~ 253 (380)
T 3ax6_A 214 ----A--------------RI-EEKYSKIAREIATSVVEAL---------------------EGVGIFGIEMFLTKQGEI 253 (380)
T ss_dssp ----C--------------SS-CHHHHHHHHHHHHHHHHHH---------------------TCCEEEEEEEEEETTSCE
T ss_pred ----C--------------CC-CHHHHHHHHHHHHHHHHHC---------------------CCeEEEEEEEEEeCCCcE
Confidence 0 01 1345666777777766554 356889999999999999
Q ss_pred EEEEeeCCCCCCC
Q psy9480 329 FLLEVNRSPSFNI 341 (395)
Q Consensus 329 wLLEVN~~P~l~~ 341 (395)
|+||||..|+...
T Consensus 254 ~viEiN~R~~~~~ 266 (380)
T 3ax6_A 254 LVNEIAPRPHNSG 266 (380)
T ss_dssp EEEEEESSCCGGG
T ss_pred EEEEecCCCCCCc
Confidence 9999999998754
No 23
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.73 E-value=4.2e-08 Score=94.43 Aligned_cols=152 Identities=13% Similarity=0.126 Sum_probs=79.2
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhc------------ccCcceeeeccccccccCCceeeeEEEEEEecccC-ceEEE
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARG------------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDP-LRIFV 205 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~------------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~p-l~vy~ 205 (395)
..+|+||..|+.|+||.++++.+++.. ....++||+||+ |..+++.+++- -..- .+++.
T Consensus 127 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~------G~e~~~~~~~~--~~~~~v~~~~ 198 (334)
T 2r85_A 127 KPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL------GVPVYPHYFYS--KVREELELMS 198 (334)
T ss_dssp SCEEEEECC----TTCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC------CEEEEEEEEEE--TTTTEEEEEE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC------CceeEEEEeec--CcCceeeeee
Confidence 478999999999999999999887632 116799999997 66666433221 1111 22232
Q ss_pred EcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy9480 206 YNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKT 285 (395)
Q Consensus 206 ~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~ 285 (395)
+++-+.-....-+..+....+. .|. ...+.. .|+. +. .. .+.+.+++.+++.++
T Consensus 199 ~~g~~~~~~~~~~~~~~~~~~~------~~~-----~~~~~~---~g~~-p~----------~l-~~~~~~~i~~~a~~~ 252 (334)
T 2r85_A 199 IDRRYESNVDAIGRIPAKDQLE------FDM-----DITYTV---IGNI-PI----------VL-RESLLMDVIEAGERV 252 (334)
T ss_dssp EEEEEEEEGGGGGGSCHHHHTT------SCC-----CCCEEE---EEEE-EC----------CC-CGGGHHHHHHHHHHH
T ss_pred eccEEEeccCcccccccccccc------ccc-----CCceee---eCCC-Cc----------cc-CHHHHHHHHHHHHHH
Confidence 2221111100001000000000 000 000000 0000 00 01 134566777777777
Q ss_pred HHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 286 IISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 286 ~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
+.++... ...+...+++||++|+++++|+||||..|+..
T Consensus 253 ~~~l~~~----------------~~~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 253 VKAAEEL----------------MGGLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp HHHHHHH----------------SSCCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred HHHHHhh----------------cccccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 6665210 01477899999999999999999999999984
No 24
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.72 E-value=1e-07 Score=93.98 Aligned_cols=171 Identities=15% Similarity=0.121 Sum_probs=95.4
Q ss_pred ccCeeeccch-HHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-------ccCcceeeeccccccccCC-ce
Q psy9480 116 YPRSWSLPYQ-QEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-------IYTESVSQLYMSNLLLMDG-FK 186 (395)
Q Consensus 116 ~P~T~~Lp~~-~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-------~~~~~IvQ~YI~~PlLi~g-rK 186 (395)
.|+++.+... ..+..+ ... -+-.+|+||..++.|.|+.++++.+++.. ....++||+||+ | +.
T Consensus 164 ~p~~~~~~~~~~~~~~~-~~~-lg~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~------G~~E 235 (367)
T 2pvp_A 164 TLDYVLLNEKNRANALD-LMN-FNFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ------GVKE 235 (367)
T ss_dssp CCCCEEECTTTGGGHHH-HCC-SCSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT------TCEE
T ss_pred CCCEEEEeCCchHHHHH-Hhc-cCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC------CCce
Confidence 4666666421 112333 222 23479999999999999999999877632 245799999996 6 65
Q ss_pred ee-eEEEEEEecccCceEEEEcceEEEeccC--CCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHH
Q psy9480 187 FD-LRVYVLITCIDPLRIFVYNNGLVRLATC--QYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSW 263 (395)
Q Consensus 187 FD-lRvyvlvts~~pl~vy~~~~g~vR~a~~--~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~ 263 (395)
|. +++.| . +-..++.. +.... -|+. . .+ |.... .+...+.
T Consensus 236 ~svi~v~v--~--g~~~~~~~-----ei~~~~~~~d~------~------~k---------y~~g~-~~~~~Pa------ 278 (367)
T 2pvp_A 236 YNLAGCKI--K--KDFCFSYI-----EEPNKQEFLDF------K------QK---------YLDFS-RNKAPKA------ 278 (367)
T ss_dssp EEEEEEEE--T--TEEEEEEE-----EETTTTEEECC------C------CS---------SCCSC-CCSCCCC------
T ss_pred eeEEEEEE--C--CEEEEEEE-----EEecCCceEcc------c------cc---------ccCCC-eeEEecC------
Confidence 44 55544 1 11111111 11110 0110 0 01 10000 0000000
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCC
Q psy9480 264 LLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAG 343 (395)
Q Consensus 264 l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~ 343 (395)
.. .+.+.++|.+++.+++.++ +|..+.++||++| ++++|+||||..|++...+
T Consensus 279 ----~l-~~~~~~~i~~~a~~~~~aL---------------------g~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s 331 (367)
T 2pvp_A 279 ----SL-SNALEEQLKENFKKLYSDL---------------------FDGAIIRCDFFVI-ENEVYLNEINPIPGSLANY 331 (367)
T ss_dssp ----CC-CHHHHHHHHHHHHHHHTTT---------------------STTCCEEEEEEEE-TTEEEEEEEESSCGGGGGG
T ss_pred ----CC-CHHHHHHHHHHHHHHHHHc---------------------CCCCEEEEEEEEE-CCeEEEEEEeCCCCCCccc
Confidence 01 1345566666666655443 4667789999999 8999999999999986554
Q ss_pred cchHHHHHHHHHHHhhh
Q psy9480 344 IVDERVKRTLIYDTFKI 360 (395)
Q Consensus 344 ~~d~~vk~~li~d~~~l 360 (395)
-+. -...++..++..
T Consensus 332 ~~p--~~~~l~~~li~~ 346 (367)
T 2pvp_A 332 LFD--DFKTTLENLAQS 346 (367)
T ss_dssp GSS--SHHHHHHHHHHH
T ss_pred ccC--CHHHHHHHHHhC
Confidence 433 234555555554
No 25
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.71 E-value=2.7e-07 Score=91.32 Aligned_cols=146 Identities=12% Similarity=0.148 Sum_probs=88.4
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCC-CCceEeeCChHHHhcc-----cCcceeeeccccccccCCceeee
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAE-GKGIKIFNTLEEARGI-----YTESVSQLYMSNLLLMDGFKFDL 189 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~-G~GI~li~~~~~i~~~-----~~~~IvQ~YI~~PlLi~grKFDl 189 (395)
.|+++.+. +.+++.+..++- +-.+|+||..+.. |+|+.++++.+++... ...++||+||+ | ..++
T Consensus 127 ~p~~~~~~-~~~~~~~~~~~~-g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~lvEe~i~------g-~~E~ 197 (389)
T 3q2o_A 127 VATYRLVQ-NQEQLTEAIAEL-SYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLANAAECILEKWVP------F-EKEV 197 (389)
T ss_dssp CCCEEEES-SHHHHHHHHHHH-CSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHHHHSCEEEEECCC------C-SEEE
T ss_pred CCCeEEEC-CHHHHHHHHHhc-CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCCEEEEeccc------C-ceEE
Confidence 56666664 233333333221 3468999999865 8999999998887422 36799999997 2 1356
Q ss_pred EEEEEEecccCceEE-----EEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHH
Q psy9480 190 RVYVLITCIDPLRIF-----VYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWL 264 (395)
Q Consensus 190 Rvyvlvts~~pl~vy-----~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l 264 (395)
.+.++....+...+| .+..|... .++.- .
T Consensus 198 ~v~~~~~~~G~~~~~~~~e~~~~~g~~~------------------~~~~p----------------~------------ 231 (389)
T 3q2o_A 198 SVIVIRSVSGETKVFPVAENIHVNNILH------------------ESIVP----------------A------------ 231 (389)
T ss_dssp EEEEEECTTCCEEECCCEEEEEETTEEE------------------EEEES----------------C------------
T ss_pred EEEEEEcCCCCEEEecCeeeEEcCCceE------------------EEECC----------------C------------
Confidence 666654322211111 11111100 00000 0
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCC
Q psy9480 265 LSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNI 341 (395)
Q Consensus 265 ~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~ 341 (395)
.. .+.+.+++.+++.+++.++ ++...+++||++|.++++|+||||..|+...
T Consensus 232 ---~l-~~~~~~~~~~~a~~~~~~l---------------------g~~G~~~ve~~~~~dg~~~viEiNpR~~~s~ 283 (389)
T 3q2o_A 232 ---RI-TEELSQKAIAYAKVLADEL---------------------ELVGTLAVEMFATADGEIYINELAPRPHNSG 283 (389)
T ss_dssp ---SS-CHHHHHHHHHHHHHHHHHT---------------------TCCEEEEEEEEECTTSCEEEEEEESSCCGGG
T ss_pred ---CC-CHHHHHHHHHHHHHHHHHc---------------------CCeeEEEEEEEEeCCCCEEEEEeeCCCCCch
Confidence 01 1345566666666665443 4568999999999999999999999998663
No 26
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.67 E-value=3.5e-07 Score=91.22 Aligned_cols=151 Identities=11% Similarity=0.120 Sum_probs=87.8
Q ss_pred ccCeeecc-chHHHHHHHHHcCCCcEEEEcCCCCC-CCCceEeeCChHHHhc-----ccCcceeeeccccccccCCceee
Q psy9480 116 YPRSWSLP-YQQEDFLSYVREHPHQVFISKPSRGA-EGKGIKIFNTLEEARG-----IYTESVSQLYMSNLLLMDGFKFD 188 (395)
Q Consensus 116 ~P~T~~Lp-~~~~~f~~~~~~~~~~~wIvKP~~gs-~G~GI~li~~~~~i~~-----~~~~~IvQ~YI~~PlLi~grKFD 188 (395)
.|+++.+. .+.+++....++- +-.+|+||..++ .|+|+.++++.+++.. ....+|||+||+. ..+
T Consensus 138 ~p~~~~~~~~~~~~~~~~~~~~-g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-------~~E 209 (403)
T 3k5i_A 138 MAEHRELVENTPAELAKVGEQL-GYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEALKDRPLYAEKWAYF-------KME 209 (403)
T ss_dssp BCCEEEESSCCHHHHHHHHHHH-CSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHTTTSCEEEEECCCE-------EEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHh-CCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhcCCCcEEEecCCCC-------CeE
Confidence 56666664 1344444433331 346899999886 9999999999887632 1357999999961 245
Q ss_pred eEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcC
Q psy9480 189 LRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQG 268 (395)
Q Consensus 189 lRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g 268 (395)
+.+.++....+ +..+.-.- .... .+. ...+.+ ... +
T Consensus 210 ~sv~v~~~~~g---~~~~p~~~------~~~~---~g~--~~~~~~----------------Pa~--------------~ 245 (403)
T 3k5i_A 210 LAVIVVKTKDE---VLSYPTVE------TVQE---DSI--CKLVYA----------------PAR--------------N 245 (403)
T ss_dssp EEEEEEECSSC---EEECCCEE------EEEE---TTE--EEEEEE----------------SCS--------------S
T ss_pred EEEEEEEcCCC---EEEeCCee------eEEe---CCE--EEEEEe----------------CCC--------------C
Confidence 66666543222 11111000 0000 000 000000 000 0
Q ss_pred CChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 269 LNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 269 ~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
. .+.+.+++.+++.+++.++ ++.+++++||++|+++++|++|||..|+..
T Consensus 246 l-~~~~~~~~~~~a~~i~~~L---------------------g~~G~~~ve~~~~~dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 246 V-SDAINQKAQELARKAVAAF---------------------DGKGVFGVEMFLLEDDSIMLCEIASRIHNS 295 (403)
T ss_dssp C-CHHHHHHHHHHHHHHHHTS---------------------CCSEEEEEEEEEETTSCEEEEEEESSCCGG
T ss_pred C-CHHHHHHHHHHHHHHHHHc---------------------CCeeEEEEEEEEeCCCcEEEEEeecCCCCC
Confidence 1 1344556666666555332 466899999999999999999999999875
No 27
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.63 E-value=4.8e-07 Score=90.80 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=87.7
Q ss_pred ccCeeeccchHHHHHHHHHc---CCCcEEEEcCC-CCCCCCceEeeCChHHHhcc-----cCcceeeeccccccccCCce
Q psy9480 116 YPRSWSLPYQQEDFLSYVRE---HPHQVFISKPS-RGAEGKGIKIFNTLEEARGI-----YTESVSQLYMSNLLLMDGFK 186 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~---~~~~~wIvKP~-~gs~G~GI~li~~~~~i~~~-----~~~~IvQ~YI~~PlLi~grK 186 (395)
.|+++.+. +.+++.+..++ .- -.+|+||. .|+.|+|+.++++.+++... ...+|||+||+. .
T Consensus 148 ~p~~~~v~-~~~e~~~~~~~~~~~~-~P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-------~ 218 (419)
T 4e4t_A 148 VAPHVVIE-SAAALAALDDAALDAV-LPGILKTARLGYDGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-------K 218 (419)
T ss_dssp BCCEEEEC-SHHHHHTSCHHHHHTT-CSEEEEESSSCCTTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-------E
T ss_pred CCCeEEEC-CHHHHHHHHHhhcccc-CCEEEEecCCCCCCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-------C
Confidence 46666554 33444332222 01 35899999 89999999999999887321 357999999962 2
Q ss_pred eeeEEEEEEecccCceEE-----EEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHH
Q psy9480 187 FDLRVYVLITCIDPLRIF-----VYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALN 261 (395)
Q Consensus 187 FDlRvyvlvts~~pl~vy-----~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~ 261 (395)
.++.+.++....+...+| .+.+|....+ ++ ...
T Consensus 219 ~Eisv~v~~~~~G~~~~~~~~e~~~~~g~~~~~---------------------~~-------------Pa~-------- 256 (419)
T 4e4t_A 219 YEVSALIARGADGRSAAFPLAQNVHHNGILALT---------------------IV-------------PAP-------- 256 (419)
T ss_dssp EEEEEEEEECTTSCEEECCCEEEEEETTEEEEE---------------------EE-------------SCT--------
T ss_pred eEEEEEEEEcCCCCEEEEeCeEEEeeCCeEEEE---------------------Ec-------------CCC--------
Confidence 355555554322221111 0111111000 00 000
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 262 SWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 262 ~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
+. .+.+.+++.+++.+++.++ ++.+++++||++|.+|+++++|||..|+-.
T Consensus 257 ------~l-~~~~~~~~~~~a~~i~~~l---------------------g~~G~~~vE~~~~~dG~~~v~EiNpR~~~s 307 (419)
T 4e4t_A 257 ------AA-DTARVEEAQQAAVRIADTL---------------------GYVGVLCVEFFVLEDGSFVANEMAPRPHNS 307 (419)
T ss_dssp ------TC-CHHHHHHHHHHHHHHHHHH---------------------TCCEEEEEEEEEETTCCEEEEEEESSCCGG
T ss_pred ------CC-CHHHHHHHHHHHHHHHHHC---------------------CCeeEEEEEEEEeCCCCEEEEEEeCCCCCC
Confidence 01 1345566777776666554 456899999999999999999999999864
No 28
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=98.62 E-value=3.5e-07 Score=91.56 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=33.4
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc------------------ccCcceeeeccccccccCCceeeeEEE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG------------------IYTESVSQLYMSNLLLMDGFKFDLRVY 192 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~------------------~~~~~IvQ~YI~~PlLi~grKFDlRvy 192 (395)
+-.+|+||..|+.|+|+.++++.+++.. ....+++|+||+ |+.|.+.++
T Consensus 145 g~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~------G~e~sv~~~ 211 (425)
T 3vot_A 145 SYPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID------GPEFAIETL 211 (425)
T ss_dssp CSSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC------SCEEEEEEE
T ss_pred CCcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec------CcEEEEEEE
Confidence 3458999999999999999999888732 134689999996 666766554
No 29
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.62 E-value=1.1e-06 Score=88.42 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=88.0
Q ss_pred ccCeee-ccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccccc
Q psy9480 116 YPRSWS-LPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLL 181 (395)
Q Consensus 116 ~P~T~~-Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlL 181 (395)
+|+++. .-.+.++..+..++- +-.+|+||..|+.|+|+.++++.+++... ...++||+||+.|
T Consensus 134 ~p~~~~~~~~~~~e~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-- 210 (446)
T 3ouz_A 134 VIPGSDGALAGAEAAKKLAKEI-GYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-- 210 (446)
T ss_dssp BCSBCSSSCCSHHHHHHHHHHH-CSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC--
T ss_pred cCCCcccCCCCHHHHHHHHHHh-CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC--
Confidence 455551 222344444433331 34689999999999999999998886321 4579999999843
Q ss_pred cCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHH
Q psy9480 182 MDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALN 261 (395)
Q Consensus 182 i~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~ 261 (395)
-++.+.++.........+ .. |-|+..-. .....+.+ ...
T Consensus 211 -----~e~~v~v~~d~~g~~~~~-~~----~~~~~~~~-------~~~~~~~~----------------p~~-------- 249 (446)
T 3ouz_A 211 -----RHIEVQVIGDSFGNVIHV-GE----RDCSMQRR-------HQKLIEES----------------PAI-------- 249 (446)
T ss_dssp -----EEEEEEEEECTTSCEEEE-EE----EEEEEEET-------TEEEEEEE----------------SCT--------
T ss_pred -----cEEEEEEEEcCCCCEEEE-ee----ceeeeeec-------CceEEEEC----------------CCC--------
Confidence 266666665443322111 11 11110000 00000000 000
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 262 SWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 262 ~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
.. .+.+.++|.+++.+++.++ +.-..+++||++|+++++|+||||..|+-.
T Consensus 250 ------~l-~~~~~~~l~~~a~~~~~~l---------------------g~~G~~~ve~~~~~~g~~~~iEiNpR~~g~ 300 (446)
T 3ouz_A 250 ------LL-DEKTRTRLHETAIKAAKAI---------------------GYEGAGTFEFLVDKNLDFYFIEMNTRLQVE 300 (446)
T ss_dssp ------TS-CHHHHHHHHHHHHHHHHHT---------------------TCCEEEEEEEEECTTCCEEEEEEESSCCTT
T ss_pred ------CC-CHHHHHHHHHHHHHHHHHc---------------------CCCCceEEEEEEeCCCCEEEEEeECCCCCc
Confidence 01 1345566666666655443 233678899999999999999999999765
No 30
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.61 E-value=8.7e-07 Score=89.33 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=94.7
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCee--eccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc---
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSW--SLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI--- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~--~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~--- 166 (395)
...|..+.+.+++.. . -.|+++ .+. +.++..+.+++. +-.+|+||..|+.|+|+.++++.+++...
T Consensus 112 ~~dK~~~k~~l~~~g--i-----p~p~~~~~~~~-~~~~~~~~~~~~-g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~ 182 (451)
T 1ulz_A 112 MGDKARSKEVMKKAG--V-----PVVPGSDGVLK-SLEEAKALAREI-GYPVLLKATAGGGGRGIRICRNEEELVKNYEQ 182 (451)
T ss_dssp HHSHHHHHHHHHHTT--C-----CBCCBCSSSCC-CHHHHHHHHHHH-CSSEEEEECSSSSCCSCEEESSHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHcC--C-----CCCCCcccccC-CHHHHHHHHHHc-CCCEEEEECCCCCCccEEEeCCHHHHHHHHHH
Confidence 345655555544321 1 145555 332 333333333321 34699999999999999999998876321
Q ss_pred ----------cCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceeccc
Q psy9480 167 ----------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNY 236 (395)
Q Consensus 167 ----------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~ 236 (395)
...++||+||+.+ -++++.++....+.... +. .|.|+. .. . .....+.+
T Consensus 183 ~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~~~G~~~~-~~----~~~~~~--~~---~--~~~~~~~~-- 241 (451)
T 1ulz_A 183 ASREAEKAFGRGDLLLEKFIENP-------KHIEYQVLGDKHGNVIH-LG----ERDCSI--QR---R--NQKLVEIA-- 241 (451)
T ss_dssp HHHHHHHTTSCCCEEEEECCCSC-------EEEEEEEEECTTSCEEE-EE----EEEEEE--EE---T--TEEEEEEE--
T ss_pred HHHHHHHhcCCCeEEEEEcccCC-------eEEEEEEEEcCCCCEEE-Ee----eeeccc--cc---c--cccceeEC--
Confidence 3579999999732 26677776543233211 11 122210 00 0 00000000
Q ss_pred ccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEE
Q psy9480 237 SVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEIL 316 (395)
Q Consensus 237 ~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~ 316 (395)
... .. .+.+.++|.+++.+++.++ ++...+
T Consensus 242 --------------P~~--------------~l-~~~~~~~i~~~a~~~~~~l---------------------g~~G~~ 271 (451)
T 1ulz_A 242 --------------PSL--------------IL-TPEKREYYGNIVTKAAKEI---------------------GYYNAG 271 (451)
T ss_dssp --------------SCS--------------SC-CHHHHHHHHHHHHHHHHHT---------------------TCCEEE
T ss_pred --------------Ccc--------------cC-CHHHHHHHHHHHHHHHHHc---------------------CCCcce
Confidence 000 01 1345566666666655443 244678
Q ss_pred eeeEEecCCCceEEEEeeCCCCCC
Q psy9480 317 GFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 317 G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
++||++|++|++|+||||..|+-.
T Consensus 272 ~ve~~~~~~g~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 272 TMEFIADQEGNLYFIEMNTRIQVE 295 (451)
T ss_dssp EEEEEECTTCCEEEEEEECSCCTT
T ss_pred EEEEEEeCCCCEEEEEeeCCCCcc
Confidence 999999999999999999998654
No 31
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.60 E-value=9.6e-07 Score=89.00 Aligned_cols=131 Identities=12% Similarity=0.151 Sum_probs=79.6
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhc-------------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEE
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARG-------------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFV 205 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~-------------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~ 205 (395)
-.+|+||..|+.|+|+.++++.+++.. ....++||+||+.+ -++++-++....+....+
T Consensus 152 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~v~~~~~G~~~~~- 223 (451)
T 2vpq_A 152 YPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF-------RHIEIQIVGDSYGNVIHL- 223 (451)
T ss_dssp SSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE-------EEEEEEEEECTTSCEEEE-
T ss_pred CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC-------eEEEEEEEEcCCCCEEEE-
Confidence 468999999999999999999887632 13579999999732 366776665443332211
Q ss_pred EcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy9480 206 YNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKT 285 (395)
Q Consensus 206 ~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~ 285 (395)
. .|.|+. .. + .....+.+ .. ..-.+.+.++|.+++.++
T Consensus 224 ~----~~~~~~--~~----~-~~~~~~~~----------------P~---------------~~l~~~~~~~i~~~a~~~ 261 (451)
T 2vpq_A 224 G----ERDCTI--QR----R-MQKLVEEA----------------PS---------------PILDDETRREMGNAAVRA 261 (451)
T ss_dssp E----EEEEEE--EE----T-TEEEEEEE----------------SC---------------TTCCHHHHHHHHHHHHHH
T ss_pred e----ccccch--hc----c-ccceEEEc----------------CC---------------CCCCHHHHHHHHHHHHHH
Confidence 1 111110 00 0 00000000 00 001134556677776666
Q ss_pred HHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEec-CCCceEEEEeeCCCCCC
Q psy9480 286 IISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILID-STMKPFLLEVNRSPSFN 340 (395)
Q Consensus 286 ~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD-~~~kpwLLEVN~~P~l~ 340 (395)
+.++ ++-..+++||++| +++++|+||||..|+-.
T Consensus 262 ~~~l---------------------g~~G~~~ve~~~~~~~g~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 262 AKAV---------------------NYENAGTIEFIYDLNDNKFYFMEMNTRIQVE 296 (451)
T ss_dssp HHHT---------------------TCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred HHHc---------------------CCcceEEEEEEEECCCCCEEEEEeeCCCCCc
Confidence 5443 2447889999999 89999999999999654
No 32
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.60 E-value=1.5e-06 Score=86.02 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=46.1
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc---------ccCcceeeeccccccccCCce
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG---------IYTESVSQLYMSNLLLMDGFK 186 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---------~~~~~IvQ~YI~~PlLi~grK 186 (395)
.|+++.+. +.+++.+..+.- +-.+|+||..|+.|+|+.++++.+++.. ....++||+||+ |..
T Consensus 124 ~p~~~~~~-~~~~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~------g~e 195 (403)
T 4dim_A 124 TARHFVVR-NENELKNALENL-KLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETMNLTKRDYCIVEEFIE------GYE 195 (403)
T ss_dssp CCCEECCC-SHHHHHHHHHTS-CSSEEEECSCC-----CEEESSHHHHHHHHHHHHHHCSSSCCEEEECCC------SEE
T ss_pred CCCEEEeC-CHHHHHHHHhcC-CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhcCcCCcEEEEEccC------CcE
Confidence 56776654 445555544442 3469999999999999999999988732 135699999997 667
Q ss_pred eeeEEEE
Q psy9480 187 FDLRVYV 193 (395)
Q Consensus 187 FDlRvyv 193 (395)
|++.+++
T Consensus 196 ~sv~~~~ 202 (403)
T 4dim_A 196 FGAQAFV 202 (403)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 7777664
No 33
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.58 E-value=4.3e-07 Score=89.70 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=46.7
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCC-CCCceEeeCChHHHhc-----ccCcceeeeccccccccCCceeee
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGA-EGKGIKIFNTLEEARG-----IYTESVSQLYMSNLLLMDGFKFDL 189 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs-~G~GI~li~~~~~i~~-----~~~~~IvQ~YI~~PlLi~grKFDl 189 (395)
.|+++.+. +.+++.+..+.- +-.+|+||..|+ .|+|+.++++.+++.. ....+|||+||+ | ..++
T Consensus 125 ~p~~~~~~-~~~~~~~~~~~~-g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~i~------g-~~E~ 195 (377)
T 3orq_A 125 VVPFISVK-ESTDIDKAIETL-GYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLIETSECVAEKYLN------I-KKEV 195 (377)
T ss_dssp BCCEEEEC-SSTHHHHHHHHT-CSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHHTTSCEEEEECCC------E-EEEE
T ss_pred CCCeEEEC-CHHHHHHHHHHc-CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhcCCCcEEEEccCC------C-CEEE
Confidence 46666554 223333333331 346899999986 8999999999887732 136799999997 2 2456
Q ss_pred EEEEEEe
Q psy9480 190 RVYVLIT 196 (395)
Q Consensus 190 Rvyvlvt 196 (395)
.+.++..
T Consensus 196 sv~~~~~ 202 (377)
T 3orq_A 196 SLTVTRG 202 (377)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 6666533
No 34
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.58 E-value=2.3e-07 Score=88.15 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=50.6
Q ss_pred cccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeC-ChHHHhc-------c-cCcceeeeccccccccCCc
Q psy9480 115 FYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFN-TLEEARG-------I-YTESVSQLYMSNLLLMDGF 185 (395)
Q Consensus 115 ~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~-~~~~i~~-------~-~~~~IvQ~YI~~PlLi~gr 185 (395)
.+|+|+.+. +.+++...+++. + .+|+||..|+.|+|+.+++ +.+++.. . ...+++|+||+.+ .
T Consensus 134 ~~P~t~~~~-~~~~~~~~~~~~-~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~-----~ 205 (316)
T 1gsa_A 134 LTPETLVTR-NKAQLKAFWEKH-S-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAI-----K 205 (316)
T ss_dssp TSCCEEEES-CHHHHHHHHHHH-S-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGG-----G
T ss_pred cCCCeEEeC-CHHHHHHHHHHc-C-CEEEEECCCCCcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCC-----C
Confidence 679998775 233343333332 2 6999999999999999998 6554421 1 3579999999731 3
Q ss_pred eeeeEEEEE
Q psy9480 186 KFDLRVYVL 194 (395)
Q Consensus 186 KFDlRvyvl 194 (395)
.+|+|++++
T Consensus 206 ~~~~~v~~~ 214 (316)
T 1gsa_A 206 DGDKRVLVV 214 (316)
T ss_dssp GCEEEEEEE
T ss_pred CCCEEEEEE
Confidence 699999886
No 35
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.56 E-value=1.5e-07 Score=92.14 Aligned_cols=89 Identities=12% Similarity=0.182 Sum_probs=33.6
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCC-CCCceEeeCChHHHhcc----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGA-EGKGIKIFNTLEEARGI---- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs-~G~GI~li~~~~~i~~~---- 166 (395)
...|..+.+.+++.. . -.|+++.+. .+++.+.+++. +-.+|+||..++ .|+|+.++++.+++...
T Consensus 90 ~~dK~~~~~~l~~~g--i-----p~p~~~~~~--~~~~~~~~~~~-~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~ 159 (365)
T 2z04_A 90 KKSRIREKLFLKKHG--F-----PVPEFLVIK--RDEIIDALKSF-KLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNH 159 (365)
T ss_dssp HTCHHHHHHHHHTTT--C-----CCCCEEEC-----------------CEEEECC-------------------------
T ss_pred hhCHHHHHHHHHHcC--C-----CCCCEEEEc--HHHHHHHHHhc-CCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHh
Confidence 456666655554321 1 256666553 23333333221 346999999999 99999999998776321
Q ss_pred --cCcceeeeccccccccCCceeeeEEEEEEec
Q psy9480 167 --YTESVSQLYMSNLLLMDGFKFDLRVYVLITC 197 (395)
Q Consensus 167 --~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts 197 (395)
...++||+||+. |+ ++++.++...
T Consensus 160 ~~~~~~lvEe~i~~-----g~--e~sv~~~~d~ 185 (365)
T 2z04_A 160 DKEESFIIEEFVKF-----EA--EISCIGVRDR 185 (365)
T ss_dssp -----CEEEECCCC-----SE--EEEEEEEECT
T ss_pred ccCCCEEEEccCCC-----CE--EEEEEEEECC
Confidence 356999999972 33 6777777543
No 36
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.52 E-value=1.4e-06 Score=87.94 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=53.0
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc------
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG------ 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~------ 165 (395)
..+|..+.+.++++. .| .|+++.+. +.++..+++++. +-.+|+||..++.|+|+.++++.+++..
T Consensus 121 ~~dK~~~k~~l~~~G--Ip-----~p~~~~~~-~~~ea~~~~~~~-g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~ 191 (442)
T 3lp8_A 121 ESSKGFTKELCMRYG--IP-----TAKYGYFV-DTNSAYKFIDKH-KLPLVVKADGLAQGKGTVICHTHEEAYNAVDAML 191 (442)
T ss_dssp HHCHHHHHHHHHHHT--CC-----BCCEEEES-SHHHHHHHHHHS-CSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHCC--CC-----CCCEEEEC-CHHHHHHHHHHc-CCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 457777666665432 11 57777664 445555555442 3469999999999999999999887631
Q ss_pred -------ccCcceeeeccc
Q psy9480 166 -------IYTESVSQLYMS 177 (395)
Q Consensus 166 -------~~~~~IvQ~YI~ 177 (395)
....+|||+||+
T Consensus 192 ~~~~~g~~~~~vlvEe~i~ 210 (442)
T 3lp8_A 192 VHHKFGEAGCAIIIEEFLE 210 (442)
T ss_dssp TSCTTGGGGSSEEEEECCC
T ss_pred hhcccCCCCCeEEEEEeec
Confidence 025799999997
No 37
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.51 E-value=2.4e-06 Score=84.17 Aligned_cols=147 Identities=13% Similarity=0.201 Sum_probs=84.2
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-----------ccCcceeeeccccccccCC
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-----------IYTESVSQLYMSNLLLMDG 184 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-----------~~~~~IvQ~YI~~PlLi~g 184 (395)
.|+++.+. +.+++.+..++- +-.+|+||..|+.|+|+.++++.+++.. ....++||+||+. |
T Consensus 128 ~p~~~~~~-~~~~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g 200 (391)
T 1kjq_A 128 TSTYRFAD-SESLFREAVADI-GYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-----D 200 (391)
T ss_dssp BCCEEEES-SHHHHHHHHHHH-CSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-----S
T ss_pred CCCeeeeC-CHHHHHHHHHhc-CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-----C
Confidence 56776654 333443333321 3469999999999999999999877631 1357999999972 3
Q ss_pred ceeeeEEEEEEecccCceEEEEcceEEEeccC-CCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHH
Q psy9480 185 FKFDLRVYVLITCIDPLRIFVYNNGLVRLATC-QYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSW 263 (395)
Q Consensus 185 rKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~-~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~ 263 (395)
.++++.++... +| +.++.. .+.. .. .+.. .++. ..
T Consensus 201 --~E~sv~~~~~~----------~g-~~~~~~~~~~~---~~-~~~~---~~~~--------------p~---------- 236 (391)
T 1kjq_A 201 --FEITLLTVSAV----------DG-VHFCAPVGHRQ---ED-GDYR---ESWQ--------------PQ---------- 236 (391)
T ss_dssp --EEEEEEEEEET----------TE-EEECCCEEEEE---ET-TEEE---EEEE--------------CC----------
T ss_pred --eEEEEEEEEeC----------CC-eEEccCcceEE---EC-CEEE---EEEe--------------CC----------
Confidence 35666665432 12 111110 0000 00 0000 0110 00
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 264 LLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 264 l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
.. .+.+.+++.+++.+++.++ ++...+++||++|++ ++|+||||..|+-.
T Consensus 237 ----~l-~~~~~~~~~~~a~~~~~~l---------------------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 286 (391)
T 1kjq_A 237 ----QM-SPLALERAQEIARKVVLAL---------------------GGYGLFGVELFVCGD-EVIFSEVSPRPHDT 286 (391)
T ss_dssp ----CC-CHHHHHHHHHHHHHHHHHH---------------------CSSEEEEEEEEEETT-EEEEEEEESSCCGG
T ss_pred ----CC-CHHHHHHHHHHHHHHHHHc---------------------CCeeEEEEEEEEeCC-cEEEEEEECCCCCC
Confidence 01 1345566777777766554 356889999999988 99999999999854
No 38
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.50 E-value=3.3e-06 Score=82.73 Aligned_cols=169 Identities=12% Similarity=0.128 Sum_probs=94.6
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCC-CCCceEeeCChHHHhcc----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGA-EGKGIKIFNTLEEARGI---- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs-~G~GI~li~~~~~i~~~---- 166 (395)
...|....+.++++. . =.|+++.+. +.++..+..++- +-.+|+||..++ .|+|+.++++.+++...
T Consensus 94 ~~dK~~~k~~l~~~g--i-----p~p~~~~~~-~~~~~~~~~~~~-g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~ 164 (369)
T 3aw8_A 94 AQDRLREKTFFQGLG--V-----PTPPFHPVD-GPEDLEEGLKRV-GLPALLKTRRGGYDGKGQALVRTEEEALEALKAL 164 (369)
T ss_dssp HTCHHHHHHHHHHHT--C-----CCCCEEEES-SHHHHHHHHTTT-CSSEEEEECCC------EEEECSHHHHHHHHTTT
T ss_pred hcCHHHHHHHHHHCC--C-----CCCCceeeC-CHHHHHHHHHHc-CCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc
Confidence 457777666665432 1 246666654 344554444332 346999999999 99999999998887422
Q ss_pred -cCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCC
Q psy9480 167 -YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENY 245 (395)
Q Consensus 167 -~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~ 245 (395)
...++||+||+. |+ ++.+.++....+...++-..+ .+.. ....+ .+.+-
T Consensus 165 ~~~~~lvEe~i~~-----g~--e~sv~~~~d~~G~~~~~~~~~--------~~~~---~~~~~--~~~~p---------- 214 (369)
T 3aw8_A 165 GGRGLILEGFVPF-----DR--EVSLLAVRGRTGEVAFYPLVE--------NRHW---GGILR--LSLAP---------- 214 (369)
T ss_dssp CSSSEEEEECCCC-----SE--EEEEEEEECTTSCEEECCCEE--------EEEE---TTEEE--EEEES----------
T ss_pred CCCcEEEEEcCCC-----CE--EEEEEEEECCCCCEEEECCee--------eeee---CCEEE--EEECC----------
Confidence 357999999972 44 555555543222211110000 0000 00000 00000
Q ss_pred CCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCC
Q psy9480 246 NKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDST 325 (395)
Q Consensus 246 ~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~ 325 (395)
.. .. .+.+.+++.+++.+++.++ ++...+++||++|+
T Consensus 215 ------~~--------------~l-~~~~~~~~~~~a~~~~~~l---------------------g~~G~~~vd~~~~~- 251 (369)
T 3aw8_A 215 ------AP--------------GA-SEALQKKAEAYALRAMEAL---------------------DYVGVLALEFFQVG- 251 (369)
T ss_dssp ------CT--------------TC-CHHHHHHHHHHHHHHHHHH---------------------TCCEEEEEEEEEET-
T ss_pred ------CC--------------CC-CHHHHHHHHHHHHHHHHHC---------------------CCeeEEEEEEEEEC-
Confidence 00 01 1345566667766666554 35578999999999
Q ss_pred CceEEEEeeCCCCCCCC
Q psy9480 326 MKPFLLEVNRSPSFNIA 342 (395)
Q Consensus 326 ~kpwLLEVN~~P~l~~~ 342 (395)
+++|+||||..|+....
T Consensus 252 ~~~~viEiN~R~~~~~~ 268 (369)
T 3aw8_A 252 EELLFNEMAPRVHNSGH 268 (369)
T ss_dssp TEEEEEEEESSCCGGGT
T ss_pred CcEEEEEEeCCcCCccc
Confidence 89999999999987643
No 39
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.48 E-value=1e-06 Score=88.72 Aligned_cols=88 Identities=26% Similarity=0.281 Sum_probs=56.6
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI----- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~----- 166 (395)
..+|....+.++++. . =.|+++.+. +.++..+++++. +-.+|+||..++.|+|+.++++.+++...
T Consensus 105 ~~dK~~~k~~l~~~G--I-----ptp~~~~~~-~~~ea~~~~~~~-g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~ 175 (431)
T 3mjf_A 105 EGSKAFTKDFLARHN--I-----PSAEYQNFT-DVEAALAYVRQK-GAPIVIKADGLAAGKGVIVAMTQEEAETAVNDML 175 (431)
T ss_dssp HHCHHHHHHHHHHTT--C-----SBCCEEEES-CHHHHHHHHHHH-CSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHcC--C-----CCCCeEeeC-CHHHHHHHHHHc-CCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHH
Confidence 456766666654322 1 247776664 344444444331 34699999999999999999998876311
Q ss_pred --------cCcceeeeccccccccCCceeeeEEEEEEe
Q psy9480 167 --------YTESVSQLYMSNLLLMDGFKFDLRVYVLIT 196 (395)
Q Consensus 167 --------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvt 196 (395)
...+|||+||+ |+ ++.+.++..
T Consensus 176 ~~~~~g~~~~~vlvEe~i~------G~--E~sv~~~~d 205 (431)
T 3mjf_A 176 AGNAFGDAGHRIVVEEFLD------GE--EASFIVMVD 205 (431)
T ss_dssp TTHHHHCCCCCEEEEECCC------SE--EEEEEEEEE
T ss_pred hhccccCCCCeEEEEEeeC------Cc--EEEEEEEEc
Confidence 24799999997 54 555555533
No 40
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.44 E-value=6e-06 Score=83.11 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=39.3
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccccccCCceeeeEEEEEEec
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLLMDGFKFDLRVYVLITC 197 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts 197 (395)
-.+|+||..|+.|+|+.++++.+++... ...++||+||+.+ -++++.++...
T Consensus 154 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-------~e~~v~~~~~~ 218 (449)
T 2w70_A 154 YPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENP-------RHVEIQVLADG 218 (449)
T ss_dssp SSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-------EEEEEEEEECT
T ss_pred CcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCC-------eEEEEEEEEcC
Confidence 4699999999999999999998876321 3579999999732 25666666543
No 41
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.43 E-value=2.8e-06 Score=84.84 Aligned_cols=78 Identities=22% Similarity=0.196 Sum_probs=52.2
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---- 166 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---- 166 (395)
...+|..+.+.+++.. . -.|+++.+. +.++..+.+++. +-.+|+||..|+.|+|+.++++.+++...
T Consensus 99 ~~~dK~~~k~~l~~~g--i-----p~p~~~~~~-~~~~~~~~~~~~-~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~ 169 (424)
T 2yw2_A 99 LEGSKAFAKTFMKKYG--I-----PTARYEVFT-DFEKAKEYVEKV-GAPIVVKADGLAAGKGAVVCETVEKAIETLDRF 169 (424)
T ss_dssp HHHCHHHHHHHHHHTT--C-----CBCCEEEES-CHHHHHHHHHHH-CSSEEEEESSCCTTCSEEEESSHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcC--C-----CCCCeEEEC-CHHHHHHHHHHc-CCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHH
Confidence 3468887777665422 1 247777664 333333333321 34699999999999999999998876311
Q ss_pred ---------cCcceeeeccc
Q psy9480 167 ---------YTESVSQLYMS 177 (395)
Q Consensus 167 ---------~~~~IvQ~YI~ 177 (395)
...++||+||+
T Consensus 170 ~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 170 LNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp HTSCTTGGGGSSEEEEECCC
T ss_pred HhhhhccCCCCeEEEEECCC
Confidence 25799999996
No 42
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.41 E-value=3.9e-06 Score=83.60 Aligned_cols=87 Identities=26% Similarity=0.270 Sum_probs=56.5
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI----- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~----- 166 (395)
..+|..+.+.++++. . -.|+++.+. +.++..+.+++. +-.+|+||..|+.|+|+.++++.+++...
T Consensus 99 ~~dK~~~~~~l~~~g--i-----p~p~~~~~~-~~~~~~~~~~~~-~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~ 169 (417)
T 2ip4_A 99 EGSKAFAKGLMERYG--I-----PTARYRVFR-EPLEALAYLEEV-GVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANIL 169 (417)
T ss_dssp HHCHHHHHHHHHHTC--C-----CBCCEEEES-SHHHHHHHHHHH-CSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHcC--C-----CCCCeeeeC-CHHHHHHHHHHc-CCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHH
Confidence 357776666654321 1 246766654 334443333321 34799999999999999999998876321
Q ss_pred ----cCcceeeeccccccccCCceeeeEEEEEE
Q psy9480 167 ----YTESVSQLYMSNLLLMDGFKFDLRVYVLI 195 (395)
Q Consensus 167 ----~~~~IvQ~YI~~PlLi~grKFDlRvyvlv 195 (395)
...++||+||+ |+ ++++.++.
T Consensus 170 ~~~~~~~~lvEe~i~------g~--E~sv~~~~ 194 (417)
T 2ip4_A 170 NRAEGGEVVVEEYLE------GE--EATVLALT 194 (417)
T ss_dssp TSSSCCCEEEEECCC------SC--EEEEEEEE
T ss_pred hhccCCeEEEEECcc------Cc--EEEEEEEE
Confidence 15799999997 44 66776664
No 43
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.40 E-value=1.5e-06 Score=93.07 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeC---ChHHHhc----
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFN---TLEEARG---- 165 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~---~~~~i~~---- 165 (395)
..|....+.+.++.- =+|+++.+.. .++..+.+....+..+|+||..|+.|+||.+++ +.+++..
T Consensus 483 ~DK~~tk~lL~~~GI-------PvP~~~~~~~-~~ea~~~~~~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~ 554 (750)
T 3ln6_A 483 ANKVVTKKILDEKHF-------PTPFGDEFTD-RKEALNYFSQIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDI 554 (750)
T ss_dssp TTSHHHHHHHHHTTC-------CCCCCCCEET-TTTHHHHHHHSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHH
T ss_pred hCHHHHHHHHHHCCc-------CCCCEEEECC-HHHHHHHHHHhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHH
Confidence 378777766654321 2466665542 223333332223567999999999999999998 6766532
Q ss_pred ---ccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 166 ---IYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 166 ---~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
....++||+||+ | .|+|+.|+
T Consensus 555 ~~~~~~~vlVEefI~------G--~E~~v~Vv 578 (750)
T 3ln6_A 555 AFTEDSAILVEEYIE------G--TEYRFFVL 578 (750)
T ss_dssp HHHHCSEEEEEECCC------S--EEEEEEEE
T ss_pred HHhhCCcEEEEeccC------C--CEEEEEEE
Confidence 246799999996 5 49999887
No 44
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.39 E-value=4.4e-06 Score=84.25 Aligned_cols=70 Identities=20% Similarity=0.320 Sum_probs=43.0
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccccccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLLM 182 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlLi 182 (395)
.|+++.+. +.++..+.+.+. +-.+|+||..++.|+|+.++++.+++... ...+|||+||+
T Consensus 138 ~p~~~~~~-~~~~~~~~~~~~-~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~----- 210 (451)
T 2yrx_A 138 TADHAAFT-SYEEAKAYIEQK-GAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE----- 210 (451)
T ss_dssp BCCEEEES-CHHHHHHHHHHH-CSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC-----
T ss_pred CCCeEEEC-CHHHHHHHHHhc-CCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc-----
Confidence 47776664 333333333321 34699999999999999999998876310 25799999997
Q ss_pred CCceeeeEEEEEE
Q psy9480 183 DGFKFDLRVYVLI 195 (395)
Q Consensus 183 ~grKFDlRvyvlv 195 (395)
|+ ++.+.++.
T Consensus 211 -G~--E~sv~~~~ 220 (451)
T 2yrx_A 211 -GE--EFSFMAFV 220 (451)
T ss_dssp -SE--EEEEEEEE
T ss_pred -Cc--EEEEEEEE
Confidence 54 45555553
No 45
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.38 E-value=3.5e-06 Score=84.44 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=80.3
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-----------ccCcceeeeccccccccCC
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG-----------IYTESVSQLYMSNLLLMDG 184 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~-----------~~~~~IvQ~YI~~PlLi~g 184 (395)
.|+++.+. +.++.....++. +-.+|+||..|+.|+|+.++++.+++.. ....++||+||+. |
T Consensus 136 ~p~~~~~~-~~~~~~~~~~~~-g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-----g 208 (433)
T 2dwc_A 136 TSRYMYAT-TLDELYEACEKI-GYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-----D 208 (433)
T ss_dssp CCCEEEES-SHHHHHHHHHHH-CSSEEEEECCC------EEECSGGGHHHHHHC---------CCEEEEECCCC-----S
T ss_pred CCCeeEeC-CHHHHHHHHHhc-CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-----C
Confidence 46766654 233333333321 3469999999999999999999887632 1356999999972 3
Q ss_pred ceeeeEEEEEEec--ccCceEEEEcc-eEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHH
Q psy9480 185 FKFDLRVYVLITC--IDPLRIFVYNN-GLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALN 261 (395)
Q Consensus 185 rKFDlRvyvlvts--~~pl~vy~~~~-g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~ 261 (395)
.++++.++... .+-..+.++.. +..+ ..+ +.. .++. ..
T Consensus 209 --~E~sv~~~~~~~~~G~~~~~~~~~~~~~~---~~~---------~~~---~~~~--------------p~-------- 249 (433)
T 2dwc_A 209 --VEVTELAVRHFDENGEIVTTFPKPVGHYQ---IDG---------DYH---ASWQ--------------PA-------- 249 (433)
T ss_dssp --EEEEECCEEEECTTSCEEEEEECCEEEEE---SSS---------SEE---EEEE--------------SC--------
T ss_pred --eeEEEEEEecccCCCCEeEEEecccceEE---EcC---------EEE---EEEc--------------CC--------
Confidence 34555554321 11110111110 0000 000 000 0110 00
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 262 SWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 262 ~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
.. .+.+.+++.+++.+++.++ ++...+++||++|++ ++|+||||..|+-.
T Consensus 250 ------~l-~~~~~~~i~~~a~~~~~~l---------------------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 250 ------EI-SEKAEREVYRIAKRITDVL---------------------GGLGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp ------CC-CHHHHHHHHHHHHHHHHHH---------------------CSSEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred ------CC-CHHHHHHHHHHHHHHHHHc---------------------CCeeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 01 1345566777777666554 356889999999988 99999999999865
No 46
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.37 E-value=5.2e-06 Score=83.73 Aligned_cols=87 Identities=20% Similarity=0.193 Sum_probs=53.8
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcE-EEEcCCCCCCCCceEeeCChHHHhcc----
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQV-FISKPSRGAEGKGIKIFNTLEEARGI---- 166 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~-wIvKP~~gs~G~GI~li~~~~~i~~~---- 166 (395)
...|..+.+.+++.. . -.|+++.+. +.++..+.+++- +-. +|+||..++.|+|+.++++.+++...
T Consensus 126 ~~dK~~~k~~l~~~g--i-----p~p~~~~~~-~~~~~~~~~~~~-g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~ 196 (452)
T 2qk4_A 126 ESSKRFAKEFMDRHG--I-----PTAQWKAFT-KPEEACSFILSA-DFPALVVKASGLAAGKGVIVAKSKEEACKAVQEI 196 (452)
T ss_dssp HHBHHHHHHHHHHTT--C-----CBCCEEEES-SHHHHHHHHHHC-SSCEEEEEESBC---CCEEECSSHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHCC--C-----CCCCeEEEC-CHHHHHHHHHhC-CCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHH
Confidence 467777666664322 1 256666654 344444444432 335 99999999999999999998876321
Q ss_pred ---------cCcceeeeccccccccCCceeeeEEEEEE
Q psy9480 167 ---------YTESVSQLYMSNLLLMDGFKFDLRVYVLI 195 (395)
Q Consensus 167 ---------~~~~IvQ~YI~~PlLi~grKFDlRvyvlv 195 (395)
...++||+||+ |+ ++++.++.
T Consensus 197 ~~~~~~g~~~~~~lvEe~i~------G~--E~sv~~~~ 226 (452)
T 2qk4_A 197 MQEKAFGAAGETIVIEELLD------GE--EVSCLCFT 226 (452)
T ss_dssp TTC-------CCEEEEECCC------SE--EEEEEEEE
T ss_pred HhhhhccCCCCeEEEEECCC------CC--eEEEEEEE
Confidence 25799999997 44 66666664
No 47
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.36 E-value=4.6e-06 Score=83.15 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=97.2
Q ss_pred cchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc------
Q psy9480 93 ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI------ 166 (395)
Q Consensus 93 ~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~------ 166 (395)
..|....+.++++. . =.|++..+. +.++..+.+++ -+-.+|+||..++.|+|+.++++.+++...
T Consensus 105 ~dK~~~k~~l~~~g--i-----p~p~~~~~~-~~~e~~~~~~~-~g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~ 175 (412)
T 1vkz_A 105 GSKVYAKRFMKKYG--I-----RTARFEVAE-TPEELREKIKK-FSPPYVIKADGLARGKGVLILDSKEETIEKGSKLII 175 (412)
T ss_dssp HCHHHHHHHHHHTT--C-----CCCCEEEES-SHHHHHHHHTT-SCSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcC--C-----CCCCEEEEC-CHHHHHHHHHh-cCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh
Confidence 46665555554321 1 136665554 44555555443 234799999999999999999998876321
Q ss_pred -------cCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccc
Q psy9480 167 -------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVN 239 (395)
Q Consensus 167 -------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~ 239 (395)
...++||+||+ |+ ++.+.++.... .++..- ..+.+.. ..+. +.- .|+
T Consensus 176 ~~~~~g~~~~vlvEe~i~------G~--E~sv~~~~dg~---~~~~~~------~~~~~~~--~~~~-~~~---~~~--- 229 (412)
T 1vkz_A 176 GELIKGVKGPVVIDEFLA------GN--ELSAMAVVNGR---NFVILP------FVRDYKR--LMDG-DRG---PNT--- 229 (412)
T ss_dssp TSSSTTCCSCEEEEECCC------SE--EEEEEEEEETT---EEEECC------CCEECCE--EETT-TEE---EEC---
T ss_pred hccccCCCCeEEEEECCc------Cc--EEEEEEEECCC---EEEEee------eeEeeee--ccCC-CCC---CCC---
Confidence 12799999996 55 44444543321 121110 0011100 0000 000 000
Q ss_pred cCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeee
Q psy9480 240 KSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFD 319 (395)
Q Consensus 240 k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D 319 (395)
.. .+...+. .. .+.+.+++++++.+++.++.. ...++-..+++|
T Consensus 230 ------g~---~~~~~P~----------~l-~~~~~~~i~~~a~~~~~~l~~----------------~g~~~~G~~~ve 273 (412)
T 1vkz_A 230 ------GG---MGSWGPV----------EI-PSDTIKKIEELFDKTLWGVEK----------------EGYAYRGFLYLG 273 (412)
T ss_dssp ------SC---SEEEECC----------CC-CHHHHHHHHHHHHHHHHHHHH----------------TTCCCEEEEEEE
T ss_pred ------CC---ceEEECC----------CC-CHHHHHHHHHHHHHHHHHHHh----------------cCCCcEEEEEEE
Confidence 00 0010000 01 145566777777777665521 011456889999
Q ss_pred EEecCCCceEEEEeeCCCCCCC
Q psy9480 320 ILIDSTMKPFLLEVNRSPSFNI 341 (395)
Q Consensus 320 ~llD~~~kpwLLEVN~~P~l~~ 341 (395)
|++++++ +++||||..|+...
T Consensus 274 ~~~~~~g-~~viEiN~R~g~~~ 294 (412)
T 1vkz_A 274 LMLHDGD-PYILEYNVRLGDPE 294 (412)
T ss_dssp EEEETTE-EEEEEEESSCCTTH
T ss_pred EEEECCC-cEEEEEecCCCCCc
Confidence 9999998 99999999998653
No 48
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.35 E-value=1.2e-05 Score=81.28 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=38.8
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccccccCCceeeeEEEEEEec
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLLMDGFKFDLRVYVLITC 197 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts 197 (395)
-.+|+||..|+.|+|+.++++.+++... ...++||+||+.+ + ++++-++...
T Consensus 158 ~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-----~--e~~v~v~~~~ 222 (461)
T 2dzd_A 158 YPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP-----K--HIEVQILGDY 222 (461)
T ss_dssp SCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSC-----E--EEEEEEEECT
T ss_pred CcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCC-----e--EEEEEEEEcC
Confidence 4699999999999999999998876321 3569999999732 2 4666666443
No 49
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.35 E-value=1.1e-05 Score=83.64 Aligned_cols=143 Identities=15% Similarity=0.138 Sum_probs=83.5
Q ss_pred hHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc---------ccCcceeeeccccccccCCceeeeEEEEEE
Q psy9480 125 QQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG---------IYTESVSQLYMSNLLLMDGFKFDLRVYVLI 195 (395)
Q Consensus 125 ~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlv 195 (395)
+.++..+..++- +-.+|+||..|+.|+|+.++++.+++.. ....++||+||+. ++ ++.+-++.
T Consensus 222 ~~~e~~~~~~~~-g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-----~~--e~sv~vl~ 293 (554)
T 1w96_A 222 SPEDGLQKAKRI-GFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-----AR--HLEVQLLA 293 (554)
T ss_dssp SHHHHHHHHHHH-CSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-----CE--EEEEEEEE
T ss_pred CHHHHHHHHHHc-CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-----Cc--EEEEEEEE
Confidence 344444433321 3468999999999999999999887632 1357999999973 23 45555554
Q ss_pred ecccCceEEEEcceEEEeccC-CCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHH
Q psy9480 196 TCIDPLRIFVYNNGLVRLATC-QYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKL 274 (395)
Q Consensus 196 ts~~pl~vy~~~~g~vR~a~~-~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l 274 (395)
...+.. +.++ .|.|+. .+.. ...+.+ ... .-.+.+
T Consensus 294 d~~G~v-v~l~----~~~~~~~~~~~--------k~~~~~----------------P~~---------------~l~~~~ 329 (554)
T 1w96_A 294 DQYGTN-ISLF----GRDCSVQRRHQ--------KIIEEA----------------PVT---------------IAKAET 329 (554)
T ss_dssp CTTSCE-EEEE----EEEEEEEETTE--------EEEEEE----------------SCC---------------SSCHHH
T ss_pred cCCCCE-EEEe----eeeeeeEeecc--------ceeeeC----------------CCc---------------CCCHHH
Confidence 432221 1111 111110 0000 000000 000 001345
Q ss_pred HHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEec-CCCceEEEEeeCCCCCC
Q psy9480 275 WNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILID-STMKPFLLEVNRSPSFN 340 (395)
Q Consensus 275 ~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD-~~~kpwLLEVN~~P~l~ 340 (395)
.++|.+++.+++.++ ++-..+++||++| +++++|+||||..++-.
T Consensus 330 ~~~i~~~a~~~~~al---------------------g~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~ 375 (554)
T 1w96_A 330 FHEMEKAAVRLGKLV---------------------GYVSAGTVEYLYSHDDGKFYFLELNPRLQVE 375 (554)
T ss_dssp HHHHHHHHHHHHHHH---------------------TCCEEEEEEEEECTTTCCEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHc---------------------CCcceEEEEEEEECCCCCEEEEEeeCCCCcc
Confidence 566777776666554 2336789999998 88999999999998765
No 50
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.35 E-value=2.6e-06 Score=91.23 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=60.1
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEee----CChHHHhc--
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIF----NTLEEARG-- 165 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li----~~~~~i~~-- 165 (395)
.+.|....+.|.++. . =+|+++.+. +.++..+.+....+-.+|+||..|+.|+||.++ .+.+++..
T Consensus 487 ~~DK~~tk~lL~~~G--I-----PvP~~~~~~-~~~ea~~~~~~~~g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al 558 (757)
T 3ln7_A 487 MENKVVTKKVLQKAG--F-----NVPQSVEFT-SLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGVQNREDFAKAL 558 (757)
T ss_dssp HHHSHHHHHHHHHHT--C-----CCCCEEEES-CHHHHHHGGGGSSSSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHH
T ss_pred hcCHHHHHHHHHHCC--c-----CCCCEEEEC-CHHHHHHHHHHhcCCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHH
Confidence 347777777776533 1 257777664 344444444232345799999999999999998 67776632
Q ss_pred -----ccCcceeeeccccccccCCceeeeEEEEE
Q psy9480 166 -----IYTESVSQLYMSNLLLMDGFKFDLRVYVL 194 (395)
Q Consensus 166 -----~~~~~IvQ~YI~~PlLi~grKFDlRvyvl 194 (395)
....++||+||+ | .|+|+.|+
T Consensus 559 ~~a~~~~~~vlVEefI~------G--~Ei~v~Vl 584 (757)
T 3ln7_A 559 EIAFREDKEVMVEDYLV------G--TEYRFFVL 584 (757)
T ss_dssp HHHHHHCSSEEEEECCC------S--EEEEEEEE
T ss_pred HHHHhcCCcEEEEEcCC------C--cEEEEEEE
Confidence 245799999995 5 48999887
No 51
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.34 E-value=2.3e-06 Score=85.37 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=57.4
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---- 166 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---- 166 (395)
...+|..+.+.++++. . -.|+++.+. +.+++.+.+++. +-.+|+||..++.|+|+.++++.+++...
T Consensus 99 ~~~dK~~~k~~l~~~g--i-----p~p~~~~~~-~~~~~~~~~~~~-~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~ 169 (422)
T 2xcl_A 99 IEGSKQFAKDLMKKYD--I-----PTAEYETFT-SFDEAKAYVQEK-GAPIVIKADGLAAGKGVTVAMTEEEAIACLHDF 169 (422)
T ss_dssp HHHCHHHHHHHHHHTT--C-----CBCCEEEES-CHHHHHHHHHHH-CSSEEEEESSCGGGTCEEEESSHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHcC--C-----CCCCeEEEC-CHHHHHHHHHhc-CCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHH
Confidence 3458887777665422 1 247776664 334443333321 34689999999999999999998876310
Q ss_pred ---------cCcceeeeccccccccCCceeeeEEEEEE
Q psy9480 167 ---------YTESVSQLYMSNLLLMDGFKFDLRVYVLI 195 (395)
Q Consensus 167 ---------~~~~IvQ~YI~~PlLi~grKFDlRvyvlv 195 (395)
...++||+||+ |+ ++++.++.
T Consensus 170 ~~~~~~g~~~~~~lvEe~i~------g~--E~sv~~~~ 199 (422)
T 2xcl_A 170 LEDEKFGDASASVVIEEYLS------GE--EFSLMAFV 199 (422)
T ss_dssp HTSCTTGGGGSSEEEEECCC------SE--EEEEEEEE
T ss_pred HhhhhccCCCCeEEEEECCc------Cc--EEEEEEEE
Confidence 25799999996 54 55555554
No 52
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.33 E-value=8.3e-06 Score=83.05 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=54.2
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG----- 165 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~----- 165 (395)
....|..+.+.+++.. -=+|+++.+. +.++..+..++- +-.+|+||..|+.|+|+.++++.+++..
T Consensus 136 ~~~DK~~~k~~l~~~G-------Ipvp~~~~v~-s~ee~~~~~~~l-g~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~ 206 (474)
T 3vmm_A 136 NARDKNKMRDAFNKAG-------VKSIKNKRVT-TLEDFRAALEEI-GTPLILKPTYLASSIGVTLITDTETAEDEFNRV 206 (474)
T ss_dssp HTTCHHHHHHHHHHTT-------SCCCCEEEEC-SHHHHHHHHHHS-CSSEEEEESSCCTTTTCEEECCTTSHHHHHHHH
T ss_pred HhhCHHHHHHHHHHcC-------CCCCCeEEEC-CHHHHHHHHHHc-CCCEEEEECCCCcCceEEEECCHHHHHHHHHHH
Confidence 3567887777765432 1256676664 344454444442 3468999999999999999999877531
Q ss_pred --------------ccCcceeeeccccc
Q psy9480 166 --------------IYTESVSQLYMSNL 179 (395)
Q Consensus 166 --------------~~~~~IvQ~YI~~P 179 (395)
....++||+||+.+
T Consensus 207 ~~~~~~~~~~~a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 207 NDYLKSINVPKAVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp HHHHTTSCCCTTCCCSCSEEEEECCCBC
T ss_pred HHHHhhccccccccCCCeEEEEeCCCCc
Confidence 13569999999844
No 53
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.33 E-value=1.2e-06 Score=84.28 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=39.0
Q ss_pred ccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHH-cCCCcEEEEcCCCCCCCCceEeeCChHHHhc---cc
Q psy9480 92 LESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVR-EHPHQVFISKPSRGAEGKGIKIFNTLEEARG---IY 167 (395)
Q Consensus 92 l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~-~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---~~ 167 (395)
...|..+.+.+++.. . -.|+|+..+.+.. ..+. ..-+-.+|+||..|+.|+|+.++++.+++.. ..
T Consensus 112 ~~dK~~~~~~l~~~g--i-----p~p~~~~~~~~~~---~~~~~~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~~ 181 (331)
T 2pn1_A 112 CFDKYTMYEYCLRQG--I-----AHARTYATMASFE---EALAAGEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSKN 181 (331)
T ss_dssp HHBHHHHHHHHHHHT--C-----CCCCEESSHHHHH---HHHHTTSSCSCEEEEESBC----------------------
T ss_pred hhCHHHHHHHHHHcC--C-----CCCcEEecHHHhh---hhhhcccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHhC
Confidence 356666666665432 1 2577776543333 3332 2224479999999999999999999887732 23
Q ss_pred CcceeeeccccccccCCceeeeEE
Q psy9480 168 TESVSQLYMSNLLLMDGFKFDLRV 191 (395)
Q Consensus 168 ~~~IvQ~YI~~PlLi~grKFDlRv 191 (395)
..++||+||+ |+.+.+.+
T Consensus 182 ~~~lvee~i~------G~e~~v~~ 199 (331)
T 2pn1_A 182 TDLIVQELLV------GQELGVDA 199 (331)
T ss_dssp -CEEEEECCC------SEEEEEEE
T ss_pred CCeEEEecCC------CcEEEEEE
Confidence 5799999997 65544443
No 54
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.29 E-value=9e-06 Score=84.77 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=80.7
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc---------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcc
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG---------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNN 208 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~---------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~ 208 (395)
+-.+|+||..|+.|+||.++++.+++.. ....++||+||+.| -++.+-++....+.. +.++
T Consensus 244 GyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g~-------rei~V~vl~D~~G~v-v~l~-- 313 (587)
T 3jrx_A 244 GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-------RHLEVQILADQYGNA-VSLF-- 313 (587)
T ss_dssp CSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCSC-------EEEEEEEEECSSSCE-EEEE--
T ss_pred CCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCCC-------cEEEEEEEEcCCCCE-EEEe--
Confidence 3468999999999999999999887632 14579999999742 355555554432222 1111
Q ss_pred eEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q psy9480 209 GLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIIS 288 (395)
Q Consensus 209 g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a 288 (395)
.|-|+..-. .......+ .. ..-.+.+.++|.+++.+++.+
T Consensus 314 --~rd~siqrr-------~qk~ie~a-----------------Pa--------------~~l~~~~~~~i~~~A~~~a~a 353 (587)
T 3jrx_A 314 --GRDCSIQRR-------HQKIVEEA-----------------PA--------------TIAPLAIFEFMEQCAIRLAKT 353 (587)
T ss_dssp --EEEEEEESS-------SCEEEEEE-----------------SC--------------CSSCHHHHHHHHHHHHHHHHH
T ss_pred --eeecccccc-------ccceeEec-----------------CC--------------CCCCHHHHHHHHHHHHHHHHH
Confidence 122211000 00000000 00 000144566677776666655
Q ss_pred HchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 289 VYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
+ ++....++||++|.++++|+||||..|+-.
T Consensus 354 l---------------------Gy~G~~~VEfl~d~dG~~yflEINpRl~~e 384 (587)
T 3jrx_A 354 V---------------------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 384 (587)
T ss_dssp H---------------------TCCEEEEEEEEECSSSCEEEEEEESSCCTT
T ss_pred c---------------------CCcceeEEEEEEeCCCCEEEEEEeCCCCCc
Confidence 4 355778899999999999999999999754
No 55
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.28 E-value=9.2e-06 Score=84.03 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=76.3
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhc---------ccCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcc
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARG---------IYTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNN 208 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~---------~~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~ 208 (395)
+-.+|+||..|+.|+|+.++++.+++.. ....++||+||+.+ -++.+-++....+.. +.++
T Consensus 228 gyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g~-------rei~V~vl~d~~G~v-v~l~-- 297 (540)
T 3glk_A 228 GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHA-------RHLEVQILADQYGNA-VSLF-- 297 (540)
T ss_dssp CSSEEEEETTCC----EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSSE-------EEEEEEEEECTTSCE-EEEE--
T ss_pred CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCCC-------cEEEEEEEEcCCCCE-EEEe--
Confidence 3468999999999999999999887632 14579999999732 355566664432222 1111
Q ss_pred eEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q psy9480 209 GLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIIS 288 (395)
Q Consensus 209 g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a 288 (395)
.|-|+..- .+..+. ....- ..-.+.+.++|.+++.+++.+
T Consensus 298 --~rd~s~qr----------------------~~~k~i----e~~Pa------------~~l~~~~~~~l~~~a~~~~~a 337 (540)
T 3glk_A 298 --GRDCSIQR----------------------RHQKIV----EEAPA------------TIAPLAIFEFMEQCAIRLAKT 337 (540)
T ss_dssp --EEEEEEC-------------------------CCSE----EEESC------------TTSCHHHHHHHHHHHHHHHHH
T ss_pred --ceeeeeee----------------------cccceE----EecCC------------CCCCHHHHHHHHHHHHHHHHH
Confidence 12221100 000000 00000 000144566677776666555
Q ss_pred HchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 289 VYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 289 ~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
+ ++....++||++|+++++|+||||..|+-.
T Consensus 338 l---------------------G~~G~~~VEf~~d~dg~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 338 V---------------------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 368 (540)
T ss_dssp H---------------------TCCEEEEEEEEEETTSCEEEEEEECSCCTT
T ss_pred c---------------------CCccceEEEEEEcCCCCEEEEEEECCCCCc
Confidence 4 355778899999999999999999999854
No 56
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=98.27 E-value=5.6e-06 Score=79.39 Aligned_cols=44 Identities=25% Similarity=0.487 Sum_probs=31.8
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhcccCcceeeeccccccccCCceeeeEEEEEE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMSNLLLMDGFKFDLRVYVLI 195 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~~~~~~IvQ~YI~~PlLi~grKFDlRvyvlv 195 (395)
+..+|+||..|+.|+||.++++ ....+++|+||+ |+ ++++.++.
T Consensus 133 ~~P~vvKP~~g~gs~Gv~~v~~------~~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 133 DCKFIIKPRTACAGEGIGFSDE------VPDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp SSSEEEEESSCC----CBCCSS------CCTTEEEEECCC------SE--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEEec------CCCCEEEEeccC------Cc--EEEEEEEe
Confidence 4569999999999999999988 456799999997 54 56666664
No 57
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.26 E-value=2.5e-05 Score=76.54 Aligned_cols=168 Identities=8% Similarity=0.073 Sum_probs=96.3
Q ss_pred cccCCCCcc---cchHHHHHHHHHHHhhCCCCCCcccCeeecc--chHHHHHHHHHcCCCcEEEEcCCCC-CCCCceEee
Q psy9480 84 NHFPGMANL---ESKAFLAYHLNRMRNHFPEDYDFYPRSWSLP--YQQEDFLSYVREHPHQVFISKPSRG-AEGKGIKIF 157 (395)
Q Consensus 84 Nh~p~~~~l---~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp--~~~~~f~~~~~~~~~~~wIvKP~~g-s~G~GI~li 157 (395)
.-.|+...+ ..|....+.+.+.. . =.|++..+. .+..++.+.+ +-.+|+||..+ +.|+|+.++
T Consensus 66 ~v~p~~~a~~~~~DK~~~k~~l~~~G--I-----ptp~~~~v~~~~e~~~~~~~~----G~P~VvKp~~~G~~GkGv~~v 134 (355)
T 3eth_A 66 PAFVNRDVFPIIADRLTQKQLFDKLH--L-----PTAPWQLLAERSEWPAVFDRL----GELAIVKRRTGGYDGRGQWRL 134 (355)
T ss_dssp TTBTTTTHHHHHHSHHHHHHHHHHTT--C-----CBCCEEEECCGGGHHHHHHHH----CSEEEEEESSSCCTTTTEEEE
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHHCc--c-----CCCCEEEECCHHHHHHHHHHc----CCCEEEEecCCCCCCCeEEEE
Confidence 445665543 36666555553321 1 234444442 3445554444 45789999985 899999999
Q ss_pred CC--hHHHhcc-cCcceeeeccccccccCCceeeeEEEEEEecccCceE-----EEEcceEEEeccCCCCCCCCCCCCCc
Q psy9480 158 NT--LEEARGI-YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRI-----FVYNNGLVRLATCQYTSPETGNLTNQ 229 (395)
Q Consensus 158 ~~--~~~i~~~-~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~v-----y~~~~g~vR~a~~~y~~~~~~nl~~~ 229 (395)
++ .+++... ...+|||+||+. ++ .+-+.++....+...+ .++++|....+ +.+
T Consensus 135 ~~~~~~el~~a~~~~vivEe~I~~-----~~--Eisv~v~~~~~G~~~~~p~~e~~~~~g~~~~~---~~p--------- 195 (355)
T 3eth_A 135 RANETEQLPAECYGECIVEQGINF-----SG--EVSLVGARGFDGSTVFYPLTHNLHQDGILRTS---VAF--------- 195 (355)
T ss_dssp ETTCGGGSCGGGTTTEEEEECCCC-----SE--EEEEEEEECTTSCEEECCCEEEEEETTEEEEE---EEC---------
T ss_pred cCCCHHHHHHHhhCCEEEEEccCC-----Cc--EEEEEEEEcCCCCEEEECCEEEEeeCCeEEEE---ECC---------
Confidence 99 8887321 116999999962 23 3444444322111111 11111111100 000
Q ss_pred cceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCC
Q psy9480 230 YMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNV 309 (395)
Q Consensus 230 ~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~ 309 (395)
. .. .+.+.+++++++.+++.++
T Consensus 196 ----------------------a---------------~l-~~~~~~~~~~~a~~i~~aL-------------------- 217 (355)
T 3eth_A 196 ----------------------P---------------QA-NAQQQARAEEMLSAIMQEL-------------------- 217 (355)
T ss_dssp ----------------------S---------------SC-CHHHHHHHHHHHHHHHHHH--------------------
T ss_pred ----------------------C---------------CC-CHHHHHHHHHHHHHHHHHC--------------------
Confidence 0 01 1445667777777766554
Q ss_pred CCceEEEeeeEEecCCCceEEEEeeCCCCCCC
Q psy9480 310 SASFEILGFDILIDSTMKPFLLEVNRSPSFNI 341 (395)
Q Consensus 310 ~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~ 341 (395)
++..++++||++++ +++|++|||..|+-+.
T Consensus 218 -g~~G~~~vEf~~~~-~~~~v~EinpR~~~sg 247 (355)
T 3eth_A 218 -GYVGVMAMECFVTP-QGLLINELAPRVHNSG 247 (355)
T ss_dssp -TCCEEEEEEEEEET-TEEEEEEEESSCCGGG
T ss_pred -CCeeEEEEEEEEEC-CcEEEEEeeCCCCCCc
Confidence 46789999999997 4899999999998753
No 58
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.02 E-value=1.2e-05 Score=85.37 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=77.9
Q ss_pred HHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccccccCCceeeeEEE
Q psy9480 126 QEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLLMDGFKFDLRVY 192 (395)
Q Consensus 126 ~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlLi~grKFDlRvy 192 (395)
.++..+..++- +-.+|+||..|+.|+|+.++++.+++... ...++||+||+.| + ++.+-
T Consensus 167 ~~e~~~~a~~i-gyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-----r--eiev~ 238 (675)
T 3u9t_A 167 LETFRREAGRI-GYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-----R--HVEIQ 238 (675)
T ss_dssp TTHHHHHHHHS-CSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-----B--CEEEE
T ss_pred HHHHHHHHHhC-CCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-----c--EEEEE
Confidence 34444444332 34589999999999999999998877321 2469999999854 2 44555
Q ss_pred EEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChh
Q psy9480 193 VLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNST 272 (395)
Q Consensus 193 vlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~ 272 (395)
++....+.. ++++ .|-|+....- ....+.+ ... .. .+
T Consensus 239 v~~d~~G~v-v~l~----~rd~s~qr~~-------qk~ie~~----------------Pa~--------------~l-~~ 275 (675)
T 3u9t_A 239 VFADRHGHC-LYLN----ERDCSIQRRH-------QKVVEEA----------------PAP--------------GL-GA 275 (675)
T ss_dssp EEECSSSCE-EEEE----EEECCCBSSS-------SBCEEEE----------------SCS--------------SC-CH
T ss_pred EEEcCCCCE-EEEe----ccccceeecc-------ceEEEEC----------------CCC--------------CC-CH
Confidence 554332221 1211 1222211100 0000000 000 01 14
Q ss_pred HHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 273 KLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 273 ~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
.+.++|.+++.+++.++ +....+++||++|+++++|+||||..|+-.
T Consensus 276 ~~~~~l~~~a~~~~~al---------------------g~~G~~~vEf~~~~dG~~~~iEiNpR~~~~ 322 (675)
T 3u9t_A 276 ELRRAMGEAAVRAAQAI---------------------GYVGAGTVEFLLDERGQFFFMEMNTRLQVE 322 (675)
T ss_dssp HHHHHHHHHHHHHHHHT---------------------TCCSEEEEECCBCTTSCBCBCEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHc---------------------CCccceEEEEEEcCCCCEEEEeccccccCC
Confidence 45566777776655443 344678999999999999999999999753
No 59
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.00 E-value=1e-05 Score=86.03 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=47.7
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccccccCCceeeeEEEEEEecccCceEEE
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFV 205 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~ 205 (395)
-.+|+||..|+.|+|+.++++.+++... ...++||+||+.| -++.+-++....+....+.
T Consensus 153 yPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-------rei~V~v~~d~~G~vv~l~ 225 (681)
T 3n6r_A 153 YPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-------RHIEIQVLCDSHGNGIYLG 225 (681)
T ss_dssp --------------------------------------------------CCSC-------EEEEEEEECCSSSCCEEEE
T ss_pred CcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-------cEEEEEEEEeCCCCEEEEe
Confidence 4689999999999999999998876321 2469999999853 3566666544332322211
Q ss_pred EcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy9480 206 YNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKT 285 (395)
Q Consensus 206 ~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~ 285 (395)
.|-|+..-. .....+.+ ... .. .+.+.++|.+++.++
T Consensus 226 -----~rd~s~qr~-------~~k~~e~~----------------Pa~--------------~l-~~~~~~~l~~~a~~~ 262 (681)
T 3n6r_A 226 -----ERECSIQRR-------NQKVVEEA----------------PSP--------------FL-DEATRRAMGEQAVAL 262 (681)
T ss_dssp -----EEECCCEET-------TEECEEEE----------------SCS--------------SC-CHHHHHHHHHHHHHH
T ss_pred -----eeecceecc-------CccEEEec----------------CCC--------------CC-CHHHHHHHHHHHHHH
Confidence 122211000 00000000 000 01 134556666666665
Q ss_pred HHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 286 IISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 286 ~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
+.++ +.-..+.+||++|+++++|+||||..|+-.
T Consensus 263 ~~al---------------------g~~G~~~vEf~~d~dg~~~~lEiNpR~~~~ 296 (681)
T 3n6r_A 263 AKAV---------------------GYASAGTVEFIVDGQKNFYFLEMNTRLQVE 296 (681)
T ss_dssp HHTT---------------------TCCSEEEEEEEECTTSCCCCCEEECSCCTT
T ss_pred HHHc---------------------CCCceEEEEEEEeCCCCEEEEecccccCCC
Confidence 4433 233567899999999999999999999755
No 60
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=97.99 E-value=2.9e-06 Score=80.60 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=119.5
Q ss_pred eEEEEcccCCChhh---hhcCCccceecccCCCCcccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHH-----HHHH
Q psy9480 60 WDVYWSDFSVSTVM---SKSMEVYHRINHFPGMANLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQE-----DFLS 131 (395)
Q Consensus 60 ~~i~W~~~~~~~~~---~~~l~~~q~vNh~p~~~~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~-----~f~~ 131 (395)
+=|-|.+..++-+. +.++..--.||...-...+..|...++.|.+..- =+|+|..+..+.. +|++
T Consensus 60 ~lisf~s~gfpl~kai~y~~lr~p~~INd~~~q~~~~DK~~~~~iL~~~gI-------PtP~t~~~~rd~~~~~~~~~~e 132 (330)
T 3t7a_A 60 CLISFHSKGFPLDKAVAYAKLRNPFVINDLNMQYLIQDRREVYSILQAEGI-------LLPRYAILNRDPNNPKECNLIE 132 (330)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHCCEESBCSTHHHHHTBHHHHHHHHHHTTC-------CCCCEEEECCBTTBGGGSSEEE
T ss_pred EEEEeccCCCcHHHHHHHHHHhCCceeCCHHHHHHHHHHHHHHHHHHHcCC-------CCCCEEEEeCCCCCccccceec
Confidence 34445544444322 2333333468999888889999999988876321 3577777653221 1110
Q ss_pred ---HHHcC---CCcEEEEcCCCCC-----------CCCce-EeeCChH---H------HhcccCcceeeeccccccccCC
Q psy9480 132 ---YVREH---PHQVFISKPSRGA-----------EGKGI-KIFNTLE---E------ARGIYTESVSQLYMSNLLLMDG 184 (395)
Q Consensus 132 ---~~~~~---~~~~wIvKP~~gs-----------~G~GI-~li~~~~---~------i~~~~~~~IvQ~YI~~PlLi~g 184 (395)
.+... -+..+|.||..|+ +|.|. .++++.. . ..+....||+|+||.. +|
T Consensus 133 ~~d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~----~G 208 (330)
T 3t7a_A 133 GEDHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPT----DG 208 (330)
T ss_dssp CSSEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCC----SS
T ss_pred cchhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCC----CC
Confidence 01101 1246999999997 77777 5554322 1 1133567999999974 35
Q ss_pred ceeeeEEEEEEecccCceEEEEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHH
Q psy9480 185 FKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWL 264 (395)
Q Consensus 185 rKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l 264 (395)
-|||+||+ ++-- -....|.+.. .+ .++. +|.+ +|....
T Consensus 209 --~DIRv~vV----G~~v----v~Am~R~sp~-~~----G~~r------~N~~-------------gG~~~~-------- 246 (330)
T 3t7a_A 209 --TDVKVYTV----GPDY----AHAEARKSPA-LD----GKVE------RDSE-------------GKEVRY-------- 246 (330)
T ss_dssp --EEEEEEEE----STTC----EEEEEEECTT-SS----CBCC------BCTT-------------SCBCCE--------
T ss_pred --ceEEEEEE----CCEE----EEEEEEeCCC-CC----CcEE------EcCC-------------CCceee--------
Confidence 79999998 2211 1233454431 00 1111 3332 111100
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCCCCCc
Q psy9480 265 LSQGLNSTKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFNIAGI 344 (395)
Q Consensus 265 ~~~g~~~~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~~~~~ 344 (395)
.-.+-++.+++..++..+. .-.+.|+|+|.++ ++++++|||.-|-......
T Consensus 247 ------~v~Lt~eek~iA~kaa~a~----------------------G~~v~GVDlLrs~-~~~~V~EVNg~~fvk~~~~ 297 (330)
T 3t7a_A 247 ------PVILNAREKLIAWKVCLAF----------------------KQTVCGFDLLRAN-GQSYVCDVNGFSFVKNSMK 297 (330)
T ss_dssp ------ECCCCHHHHHHHHHHHHHT----------------------TBSEEEEEEEEET-TEEEEEEEEESCCCSSCHH
T ss_pred ------eecCCHHHHHHHHHHHHHh----------------------CCceEEEEEEEEC-CccEEEEeCCCccccCchh
Confidence 0112233445555555443 2357899999985 6799999999999886644
Q ss_pred chHHHHHHHHHHHh
Q psy9480 345 VDERVKRTLIYDTF 358 (395)
Q Consensus 345 ~d~~vk~~li~d~~ 358 (395)
+.. -+..+|++++
T Consensus 298 yyd-~~a~il~~~~ 310 (330)
T 3t7a_A 298 YYD-DCAKILGNIV 310 (330)
T ss_dssp HHH-HHHHHHHHHH
T ss_pred HHH-HHHHHHHHHH
Confidence 322 2344444443
No 61
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.95 E-value=0.00013 Score=81.43 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=32.4
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc---------ccCcceeeeccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG---------IYTESVSQLYMS 177 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~---------~~~~~IvQ~YI~ 177 (395)
.|++..+. +.++..+..++- +-.+|+||..+..|+|+.++.+.+++.. ...+++||+||+
T Consensus 689 ~P~~~~~~-s~eea~~~~~~i-g~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~ 757 (1073)
T 1a9x_A 689 QPANATVT-AIEMAVEKAKEI-GYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD 757 (1073)
T ss_dssp CCCEEECC-SHHHHHHHHHHH-CSSEEEEC-------CEEEECSHHHHHHHHHHCC--------EEEBCCT
T ss_pred CCCceEEC-CHHHHHHHHHHc-CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC
Confidence 56766654 333333333321 3468999999999999999999888732 124699999997
No 62
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.95 E-value=1e-05 Score=79.04 Aligned_cols=39 Identities=15% Similarity=0.367 Sum_probs=29.9
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhcccCcceeeeccc
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARGIYTESVSQLYMS 177 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~~~~~~IvQ~YI~ 177 (395)
-.+|+||..|+.|+|+.++++.+++......+++|+||+
T Consensus 126 ~P~vvKp~~g~g~~gv~~v~~~~~~~~~~~~~~~ee~i~ 164 (363)
T 4ffl_A 126 PPYFVKPPCESSSVGARIIYDDKDLEGLEPDTLVEEYVE 164 (363)
T ss_dssp SCEEEECSSCCTTTTCEEEC------CCCTTCEEEECCC
T ss_pred CCEEEEECCCCCCcCeEEeccHHHhhhhccchhhhhhcc
Confidence 458999999999999999999999867778899999996
No 63
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.91 E-value=0.00013 Score=81.29 Aligned_cols=73 Identities=21% Similarity=0.079 Sum_probs=48.4
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc---------cCcceeeeccccccccCCce
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI---------YTESVSQLYMSNLLLMDGFK 186 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~---------~~~~IvQ~YI~~PlLi~grK 186 (395)
+|+++.+. +.++..+..++- +-.+|+||..+..|+|+.++.+.+++... ...++||+||+-+ +
T Consensus 143 vp~~~~v~-~~~ea~~~~~~i-g~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G~-----~- 214 (1073)
T 1a9x_A 143 TARSGIAH-TMEEALAVAADV-GFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGW-----K- 214 (1073)
T ss_dssp CCSEEEES-SHHHHHHHHHHH-CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTTS-----E-
T ss_pred CCCEEEEC-CHHHHHHHHHHc-CCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-----e-
Confidence 57777664 233333333221 34689999999999999999998887321 2469999999732 2
Q ss_pred eeeEEEEEEec
Q psy9480 187 FDLRVYVLITC 197 (395)
Q Consensus 187 FDlRvyvlvts 197 (395)
++.+-|+...
T Consensus 215 -E~~v~v~~d~ 224 (1073)
T 1a9x_A 215 -EYEMEVVRDK 224 (1073)
T ss_dssp -EEEEEEEECT
T ss_pred -EEEEEEEEeC
Confidence 5556666443
No 64
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.78 E-value=8.6e-05 Score=83.22 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=50.0
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccccccCCceeeeEEEEEEecccCceEE
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIF 204 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy 204 (395)
+-.+|+||..|+.|+|+.++++.+++... ...++||+||+. |+ ++.+-++....... +.
T Consensus 171 gyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-----g~--EisV~vl~D~~G~v-v~ 242 (1165)
T 2qf7_A 171 GYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-----AR--HVESQILGDTHGNV-VH 242 (1165)
T ss_dssp -------------------------------------------------CCCSS-----EE--EEEEEEEECTTSCE-EE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-----Cc--EEEEEEEEcCCCcE-EE
Confidence 34689999999999999999998776321 245899999973 23 56666664433321 11
Q ss_pred EEcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHH
Q psy9480 205 VYNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIK 284 (395)
Q Consensus 205 ~~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~ 284 (395)
++ -|-|+. .. .+ ....+.+- .. .. .+.+.++|.+++.+
T Consensus 243 l~----~r~~s~--~r---~~--~~~~e~~P----------------a~--------------~l-~~~~~~~i~~~a~~ 280 (1165)
T 2qf7_A 243 LF----ERDCSV--QR---RN--QKVVERAP----------------AP--------------YL-SEAQRQELAAYSLK 280 (1165)
T ss_dssp EE----EEEEEE--EE---TT--EEEEEEES----------------CT--------------TC-CHHHHHHHHHHHHH
T ss_pred EE----eecccc--ee---cc--cceEEecc----------------cc--------------cC-CHHHHHHHHHHHHH
Confidence 11 121211 00 00 00000000 00 01 13455666666666
Q ss_pred HHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEec-CCCceEEEEeeCCCCCC
Q psy9480 285 TIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILID-STMKPFLLEVNRSPSFN 340 (395)
Q Consensus 285 ~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD-~~~kpwLLEVN~~P~l~ 340 (395)
++.++ ++-..+++||++| +++++|+||||..++..
T Consensus 281 i~~al---------------------g~~G~~~vEf~vd~~dg~~~~iEiNpR~~~~ 316 (1165)
T 2qf7_A 281 IAGAT---------------------NYIGAGTVEYLMDADTGKFYFIEVNPRIQVE 316 (1165)
T ss_dssp HHHHT---------------------TCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred HHHHc---------------------CCCcceeEEEEEECCCCCEEEEEEEcCCCCC
Confidence 65543 2346778999999 88999999999999854
No 65
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.72 E-value=0.00018 Score=80.96 Aligned_cols=130 Identities=11% Similarity=0.091 Sum_probs=45.1
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccccccCCceeeeEEEEEEecccCceEEE
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFV 205 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~ 205 (395)
-.+|+||..|+.|+|+.++++.+++... ...++||+||+. .-++.+-++........ .+
T Consensus 181 yPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-------~rEisV~vl~Dg~g~vv-~l 252 (1236)
T 3va7_A 181 YPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-------ARHVEIQMMGDGFGKAI-AI 252 (1236)
T ss_dssp ----------------------------------------------------C-------CEEEEEEEEEESSSCEE-EE
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-------CeEEEEEEEecCCceEE-EE
Confidence 4689999999999999999998876321 245999999983 23555556544332211 11
Q ss_pred EcceEEEeccCCCCCCCCCCCCCccceecccccccCCCCCCCCCCCCCccChHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy9480 206 YNNGLVRLATCQYTSPETGNLTNQYMHLTNYSVNKSSENYNKSPERGSKRDFTALNSWLLSQGLNSTKLWNDIDDIIIKT 285 (395)
Q Consensus 206 ~~~g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i~k~~~~~~~~~~~g~~~~l~~l~~~l~~~g~~~~~l~~~i~~ii~~~ 285 (395)
. .|-|+.... +....+.+- .. .. .+.+.++|.+++.++
T Consensus 253 ~----~rd~s~qr~-------~~k~~e~~P----------------a~--------------~l-~~~~~~~l~~~a~~~ 290 (1236)
T 3va7_A 253 G----ERDCSLQRR-------NQKVIEETP----------------AP--------------NL-PEATRAKMRAASERL 290 (1236)
T ss_dssp E----EEEEEEEET-------TEEEEEEES----------------CS--------------SC-CHHHHHHHHHHHHHH
T ss_pred e----eeeeeeeec-------CcceEEEcC----------------CC--------------CC-CHHHHHHHHHHHHHH
Confidence 1 011110000 000000000 00 01 144556677766665
Q ss_pred HHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCC-CceEEEEeeCCCCC
Q psy9480 286 IISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDST-MKPFLLEVNRSPSF 339 (395)
Q Consensus 286 ~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~-~kpwLLEVN~~P~l 339 (395)
+.++ ++-...++||++|++ +++++||||..++-
T Consensus 291 ~~al---------------------g~~G~~~VEfivd~d~g~~y~iEINpRl~g 324 (1236)
T 3va7_A 291 GSLL---------------------KYKCAGTVEFIYDEQRDEFYFLEVNARLQV 324 (1236)
T ss_dssp HHHT---------------------TCEEEEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred HHHc---------------------CCcceEEEEEEEECCCCcEEEEEEECCCCC
Confidence 5443 355778999999985 99999999998864
No 66
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.69 E-value=0.00017 Score=80.65 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=25.2
Q ss_pred cEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeeccccc
Q psy9480 139 QVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSNL 179 (395)
Q Consensus 139 ~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~P 179 (395)
-.+|+||..|+.|+|+.++++.+++... ...++||+||+.|
T Consensus 156 yPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 156 FPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp SSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 4689999999999999999998776310 3469999999854
No 67
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.46 E-value=0.0006 Score=66.84 Aligned_cols=54 Identities=7% Similarity=0.078 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHchHHHHHhhhhcCcccCCCCCCceEEEeeeEEecCCCceEEEEeeCCCCCC
Q psy9480 272 TKLWNDIDDIIIKTIISVYPILKEKYEDLLPEHYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSFN 340 (395)
Q Consensus 272 ~~l~~~i~~ii~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~Fel~G~D~llD~~~kpwLLEVN~~P~l~ 340 (395)
+.+.+++.++..+++.++...+ ..+..+.+++++.++.+++++++|||..|+=.
T Consensus 265 ~~~~~~a~~~a~~v~~al~~~~---------------~~~~~G~~~vE~fvt~dg~i~V~EIapR~gGg 318 (361)
T 2r7k_A 265 ESLLPQVFEMGDKLVAKAKELV---------------PPGMIGPFCLQSLCNENLELVVFEMSARVDGG 318 (361)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHS---------------TTCCCEEEEEEEEECTTSCEEEEEEESSBCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhc---------------cCCccceEEEEEEEcCCCCEEEEEEcCCCCCC
Confidence 4456677777777776653211 01467899999999999999999999988754
No 68
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=97.13 E-value=0.0003 Score=71.06 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=72.4
Q ss_pred eecccCCCCcccchHHHHHHHHHHHhhC-C--CCCCcccCeeec-cchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEee
Q psy9480 82 RINHFPGMANLESKAFLAYHLNRMRNHF-P--EDYDFYPRSWSL-PYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIF 157 (395)
Q Consensus 82 ~vNh~p~~~~l~~K~~L~~~l~~~~~~~-~--~~~~~~P~T~~L-p~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li 157 (395)
.+|. ||+..+..|..++- |-++.+.+ . -..+.+|.+|.- +.+++.+++. ..-|++||..++.|.|+.+=
T Consensus 309 i~Na-~gsgv~~dKal~a~-Lp~l~~~~lgEe~il~~VpT~~c~~~~~~~~vl~~-----l~~lViKp~~g~gg~gv~iG 381 (474)
T 3n6x_A 309 LANA-VGTGVADDKDTYIY-VPEMIRFYLGEEPILSNVPTYQLSKADDLKYVLDN-----LAELVVKEVQGSGGYGMLVG 381 (474)
T ss_dssp EESC-TTTHHHHSTTTGGG-HHHHHHHHHCSCCSSEECCCEETTSHHHHHHHHHS-----GGGEEEEECCCE-----EEG
T ss_pred EeCC-CchhhhcCcHHHHH-hHHHHHHhCCHhhhccCCCceecCCHHHHHHHHhc-----hhheEEEecCCCCCCceEEC
Confidence 4565 57777777775432 22332221 1 123566755533 2233334332 24699999999999999875
Q ss_pred CCh--HH-------HhcccCcceeeecccc---ccccC----CceeeeEEEEEEecccCceEEEEcceEEEeccCC
Q psy9480 158 NTL--EE-------ARGIYTESVSQLYMSN---LLLMD----GFKFDLRVYVLITCIDPLRIFVYNNGLVRLATCQ 217 (395)
Q Consensus 158 ~~~--~~-------i~~~~~~~IvQ~YI~~---PlLi~----grKFDlRvyvlvts~~pl~vy~~~~g~vR~a~~~ 217 (395)
... ++ +......||+|++|.- |...+ .+++|+|.|++- + -..++..+|+.|+|..+
T Consensus 382 ~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~-g---~~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 382 PAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLS-G---KTVSLVPGALCRVALRE 453 (474)
T ss_dssp GGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEE-S---SSEEECSCCEEEEECST
T ss_pred CcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEc-C---CceEEecceEEEEecCC
Confidence 432 22 2122345999999973 22334 479999999985 3 23688899999999863
No 69
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=97.09 E-value=0.0042 Score=59.77 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCCCCCceEeeCChHHHhccc----Ccceeeeccc
Q psy9480 138 HQVFISKPSRGAEGKGIKIFNTLEEARGIY----TESVSQLYMS 177 (395)
Q Consensus 138 ~~~wIvKP~~gs~G~GI~li~~~~~i~~~~----~~~IvQ~YI~ 177 (395)
+-..|+||..++.|+|++++++ +++.... ..+|||+||+
T Consensus 125 ~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 125 DELYFVRIEGPRGGSGHFIVEG-SELEERLSTLEEPYRVERFIP 167 (320)
T ss_dssp SCCEEEECC------------C-EECSCCCC----CCEEEECCC
T ss_pred CCcEEEEECCCCCCCCEEEECh-HHHHHHHHhcCCCEEEEeeec
Confidence 4579999999999999999999 8884322 4689999997
No 70
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.0028 Score=49.94 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=41.2
Q ss_pred ccCee--eccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhcc-------------cCcceeeecccc
Q psy9480 116 YPRSW--SLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARGI-------------YTESVSQLYMSN 178 (395)
Q Consensus 116 ~P~T~--~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~~-------------~~~~IvQ~YI~~ 178 (395)
+|+++ .+. +.+++......- +-.+|+||..++.|+|+.++++.+++... ...++||+||+-
T Consensus 23 ~p~~~~~~~~-~~~~~~~~~~~~-~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g 98 (108)
T 2cqy_A 23 TIPGFDGVVK-DAEEAVRIAREI-GYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDN 98 (108)
T ss_dssp CCSCCCSCBS-SHHHHHHHHHHH-CSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSS
T ss_pred CCCCcccccC-CHHHHHHHHHhc-CCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCC
Confidence 46666 332 334433333221 34689999999999999999998776321 356999999974
No 71
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=92.48 E-value=0.24 Score=51.61 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChH-HHhc----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLE-EARG---- 165 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~-~i~~---- 165 (395)
.+.+|..|+-.... +|. .+++++|+.-+ +.. +.. .-||+||..|..|.||.+++... .+..
T Consensus 494 llsNKailalLw~l----~p~-hp~LLpT~f~~-~~~-----l~~---~~yV~KPi~gReG~nV~i~~~~~~~~~~~~~~ 559 (619)
T 2io8_A 494 IPGNKAILPILWSL----FPH-HRYLLDTDFTV-NDE-----LVK---TGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGK 559 (619)
T ss_dssp TTTSTTHHHHHHHH----STT-CTTCCCEESSC-CHH-----HHH---HCEEEEETTCCTTTTCEEECTTSCEEEECCCT
T ss_pred HhhhHHHHHHHHHh----CCC-CCCCCCeeecC-Ccc-----ccc---CCEEEccCCCCCCCCEEEEeCCChhHhhcccc
Confidence 46788877765543 332 23677777433 221 111 24999999999999999998622 2211
Q ss_pred -ccCcceeeeccccc
Q psy9480 166 -IYTESVSQLYMSNL 179 (395)
Q Consensus 166 -~~~~~IvQ~YI~~P 179 (395)
..+.+|.|+|++-|
T Consensus 560 y~~~~~IyQe~~~lp 574 (619)
T 2io8_A 560 FAEQKNIYQQLWCLP 574 (619)
T ss_dssp TTTSCEEEEECCCCC
T ss_pred ccCCCeEEEEecCCC
Confidence 13568999999866
No 72
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=91.32 E-value=0.56 Score=45.68 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=86.4
Q ss_pred cccchHHHHHHHHHHHhhCCC---CCCcc--cCeeecc--------------chHHHHHHHHHc-------CCCcEEEEc
Q psy9480 91 NLESKAFLAYHLNRMRNHFPE---DYDFY--PRSWSLP--------------YQQEDFLSYVRE-------HPHQVFISK 144 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~---~~~~~--P~T~~Lp--------------~~~~~f~~~~~~-------~~~~~wIvK 144 (395)
.--+|..-...+.+..+++.+ .-+|+ |.+-... +..+++++.+++ +.....|+|
T Consensus 204 ~~RrKS~HF~~Y~~va~eFa~~~~IDPWlInp~F~~c~~vdF~~~~G~~~La~~Vd~lL~kIr~KY~eygI~~~PfV~VK 283 (432)
T 3k1t_A 204 ATRRKSNHFTAYDRVVEEFAPLIDIDPWLLNPYFDTCGGLDFHARLGEEQLAEKVDSLLAKIRRKYAEYGVKQEPFVIVK 283 (432)
T ss_dssp GGSCTTHHHHHHHHHHHHHHHHHTCCGGGGCCCEEEEECCCTTSSTTHHHHHHHHHHHHHHHHHHHHHHTCCSCCCEEEE
T ss_pred chhhccchHHHHHHHHHHHHHHhCCCcccccHhhhccCCcccCccccHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 445788888877777665532 11222 2222221 123344444333 346678999
Q ss_pred CCCCCCCCceEeeCChHHHhcc----------------cCcceeeeccccccccCCceeeeEEEEEEecccCceEEEEcc
Q psy9480 145 PSRGAEGKGIKIFNTLEEARGI----------------YTESVSQLYMSNLLLMDGFKFDLRVYVLITCIDPLRIFVYNN 208 (395)
Q Consensus 145 P~~gs~G~GI~li~~~~~i~~~----------------~~~~IvQ~YI~~PlLi~grKFDlRvyvlvts~~pl~vy~~~~ 208 (395)
-.+|.-|.||..+++.+++... -...|||+.|..=-.++|---.==+|++ +- | .-+
T Consensus 284 ADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmi----d~---~-vvG 355 (432)
T 3k1t_A 284 ADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMM----DH---F-VVG 355 (432)
T ss_dssp EECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEE----TT---E-EEE
T ss_pred cCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEE----CC---E-EEE
Confidence 9999999999999999998421 2459999999643335654444334433 11 1 237
Q ss_pred eEEEeccCCCCCCCCCCCCCccceeccccc
Q psy9480 209 GLVRLATCQYTSPETGNLTNQYMHLTNYSV 238 (395)
Q Consensus 209 g~vR~a~~~y~~~~~~nl~~~~~HLTN~~i 238 (395)
|+.|+.++.=.. +|++..-||+--.+.
T Consensus 356 gFyRvh~~rg~d---ENLNapGm~F~plaf 382 (432)
T 3k1t_A 356 GFYRVHTSRGAD---ENLNAPGMHFEPLTF 382 (432)
T ss_dssp EEEEEESCCSTT---TTTSCCTTCEEEEEC
T ss_pred EEEEecCCCCCc---cCCCCCCCEeeeccc
Confidence 888998887665 899999999865543
No 73
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=87.13 E-value=0.49 Score=49.57 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHHhhCCCCCCcccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCCceEeeCChHHHhc-----
Q psy9480 91 NLESKAFLAYHLNRMRNHFPEDYDFYPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGKGIKIFNTLEEARG----- 165 (395)
Q Consensus 91 ~l~~K~~L~~~l~~~~~~~~~~~~~~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~GI~li~~~~~i~~----- 165 (395)
.+.+|.-|+- |-.+ +|.. +++++||.-+.. . +.+ .-||+||..|-.|.||.+.+...++..
T Consensus 509 LlsNKaiLal-LW~l---~p~h-p~LLpt~f~~~~---~---~~~---~~yV~KPi~gReG~nV~I~~~~~~~~~~~~g~ 574 (652)
T 2vob_A 509 IPSNKAILPM-IYHN---HPEH-PAILKAEYELTD---E---LRK---HGYAKKPIVGRVGSNVIITSGDGVVHAESGGK 574 (652)
T ss_dssp TTTSTTHHHH-HHHH---CTTC-TTBCCEESSCCH---H---HHH---HCEEEEECC-----------------------
T ss_pred hhcCHHHHHH-HHhc---ccCC-CCCCchhhcCCC---c---ccc---CCeEeccCCCCCCCCEEEEcCCchhhhhcccc
Confidence 4567776664 3332 4433 467777743322 1 111 249999999999999999875333211
Q ss_pred -ccCcceeeeccccccccCCceeeeEEE
Q psy9480 166 -IYTESVSQLYMSNLLLMDGFKFDLRVY 192 (395)
Q Consensus 166 -~~~~~IvQ~YI~~PlLi~grKFDlRvy 192 (395)
..+.+|+|+|++-| .++|...-+.+|
T Consensus 575 y~~~~~IyQe~~~lp-~f~~~~~~iG~~ 601 (652)
T 2vob_A 575 YGKRNMIYQQLFELK-KQDDYYAIIGGW 601 (652)
T ss_dssp ----CEEEEECCC---CBTTBCCEEEEE
T ss_pred cCCCCeEEEecccCC-ccCCcceEEEEE
Confidence 13569999999855 345433334443
No 74
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=77.54 E-value=1.8 Score=38.94 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=38.6
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCC-----CCCCceEe-eCChHHHhc-------c---------cCcceee
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRG-----AEGKGIKI-FNTLEEARG-------I---------YTESVSQ 173 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~g-----s~G~GI~l-i~~~~~i~~-------~---------~~~~IvQ 173 (395)
+|+++.+. +.++......+- +-.+++||..+ +.|.|+.+ +++.+++.. . ...++||
T Consensus 36 ~p~~~~~~-~~~ea~~~a~~l-g~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vlVE 113 (238)
T 1wr2_A 36 VPEEKLAK-TLDEALEYAKEI-GYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVLVA 113 (238)
T ss_dssp CCCCEEES-SHHHHHHHHHHH-CSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEEEE
T ss_pred CCCeEEeC-CHHHHHHHHHHh-CCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEEEE
Confidence 56666553 233333322221 34679999988 77888988 788887631 1 1569999
Q ss_pred eccc
Q psy9480 174 LYMS 177 (395)
Q Consensus 174 ~YI~ 177 (395)
+||.
T Consensus 114 e~i~ 117 (238)
T 1wr2_A 114 PMLK 117 (238)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9996
No 75
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=65.09 E-value=16 Score=36.66 Aligned_cols=92 Identities=18% Similarity=0.304 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHchHHHHHhh-------hhcC------ccc-------CCCCCCceEEEeeeEEecCCCceEEE
Q psy9480 272 TKLWNDIDDIIIKTIISVYPILKEKYE-------DLLP------EHY-------HHNVSASFEILGFDILIDSTMKPFLL 331 (395)
Q Consensus 272 ~~l~~~i~~ii~~~~~a~~~~l~~~~~-------~~~~------~~~-------~~~~~~~Fel~G~D~llD~~~kpwLL 331 (395)
..-|+.|++-+..-+.++...+.+-|. ...| +++ .........+.|+|+..|.+|+-|+|
T Consensus 81 ~~eW~~le~Gl~QR~~~Ln~~l~DiYg~q~il~~G~iP~lv~~~p~y~~~~~g~~p~~~~~~~i~~~Dl~r~~dG~~~vl 160 (474)
T 3n6x_A 81 ASEWARLSDGAIQRVKALNMFLHDVYHDQEIIKAGIVPSSILANAQYRPEMFGVDVPGGVYAHIAGVDLVRTGENDFYVL 160 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHTTSSCGGGGGCTTCCGGGTTCCCGGGCSCSEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHhcCCCHHHHccCccccHHHCCCCCCCCeEEEEEEEEEEECCCCCEEEE
Confidence 456777877777777666666655542 1111 000 00111235589999999999999999
Q ss_pred EeeC-CCCCCCCCcchHHHHHHHHHHHhhhccc
Q psy9480 332 EVNR-SPSFNIAGIVDERVKRTLIYDTFKILNL 363 (395)
Q Consensus 332 EVN~-~P~l~~~~~~d~~vk~~li~d~~~l~~~ 363 (395)
|-|. .||-....-.++.+..+++.++|+-..+
T Consensus 161 Edn~~~PSG~~y~lenR~~~~r~~pelf~~~~v 193 (474)
T 3n6x_A 161 EDNLRTPSGVSYMLENRKMMMRLFPELFRRYPV 193 (474)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHCHHHHHHSCB
T ss_pred EeCCCCCchHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 9999 6774322222455555556666554444
No 76
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=36.37 E-value=58 Score=31.63 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=28.4
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCC--CCCCCCc---------eEeeCChHHHh
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPS--RGAEGKG---------IKIFNTLEEAR 164 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~--~gs~G~G---------I~li~~~~~i~ 164 (395)
+|++.... +.++.....++-+...+++||. .|.+|+| +.++++.+++.
T Consensus 19 vp~~~~~~-s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~ 77 (395)
T 2fp4_B 19 VQRFFVAD-TANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVG 77 (395)
T ss_dssp CCCEEEES-SHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHH
T ss_pred CCCeEEEC-CHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHH
Confidence 45555443 3444444433322224699994 6777766 99998888763
No 77
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=33.59 E-value=48 Score=32.22 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=36.1
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCC----ceEeeCChHHHhcc-------------cCcceeeeccc
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGK----GIKIFNTLEEARGI-------------YTESVSQLYMS 177 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~----GI~li~~~~~i~~~-------------~~~~IvQ~YI~ 177 (395)
+|++.... +.++.....++- +..+++||.....|+ |+.+..+.+++... .+.++||+|+.
T Consensus 19 vp~~~~~~-s~eea~~aa~~l-G~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v~ 95 (397)
T 3ufx_B 19 VPPGKVAY-TPEEAKRIAEEF-GKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAVD 95 (397)
T ss_dssp CCCEEEES-SHHHHHHHHHHH-TSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECCC
T ss_pred CCCeEEEC-CHHHHHHHHHHc-CCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEeec
Confidence 56666553 233333333221 356899999744444 99999988876321 13578888874
No 78
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=23.94 E-value=96 Score=29.91 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=27.0
Q ss_pred ccCeeeccchHHHHHHHHHcCCCcEEEEcCCCCCCCC----ceEeeCChHHH
Q psy9480 116 YPRSWSLPYQQEDFLSYVREHPHQVFISKPSRGAEGK----GIKIFNTLEEA 163 (395)
Q Consensus 116 ~P~T~~Lp~~~~~f~~~~~~~~~~~wIvKP~~gs~G~----GI~li~~~~~i 163 (395)
+|+..... ..++.....++-+...+++||..+..|+ |+.++.+.+++
T Consensus 19 vp~~~~~~-s~eea~~aa~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel 69 (388)
T 2nu8_B 19 APVGYACT-TPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDI 69 (388)
T ss_dssp CCCEEEES-SHHHHHHHHHHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHH
T ss_pred CCCeeEEC-CHHHHHHHHHHhCCCeEEEEEecCCCCCCccCCEEEECCHHHH
Confidence 35555443 3333333333322332699999763333 99999988776
No 79
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=23.02 E-value=4.1 Score=33.88 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=11.3
Q ss_pred CCceEEEEeeCCCCCCCCC
Q psy9480 325 TMKPFLLEVNRSPSFNIAG 343 (395)
Q Consensus 325 ~~kpwLLEVN~~P~l~~~~ 343 (395)
+++|||-||+..|+-...+
T Consensus 105 dl~pwl~ei~~~p~~~~~~ 123 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLTQS 123 (144)
T ss_dssp GGHHHHHHTTCC-------
T ss_pred chhHHHHHhCCCcHHHhcc
Confidence 6799999999999987654
No 80
>2inb_A Hypothetical protein; ZP_00107633.1, structural genomics, PS protein structure initiative, joint center for structural G JCSG; HET: MSE GOL; 1.60A {Nostoc punctiforme} SCOP: c.52.1.32 PDB: 2okf_A*
Probab=22.43 E-value=54 Score=27.07 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCEEecCCCCCeEEEEccc
Q psy9480 38 YKIVEDVATLMGMGIVRDDEEPWDVYWSDF 67 (395)
Q Consensus 38 ~~~v~~~~~~~g~~~~~~~~~~~~i~W~~~ 67 (395)
++.|+.+|++-||.+++++ ..+.|.+.
T Consensus 9 H~~vk~aL~kdgW~It~DP---~~l~~~~~ 35 (140)
T 2inb_A 9 HQVVKIALEKDGWQITNDP---LTISVGGV 35 (140)
T ss_dssp HHHHHHHHHHTTCEEEESS---CCCEETTE
T ss_pred HHHHHHHHHhcCCEeeCCC---cEEEECcE
Confidence 4789999999999999988 34566654
No 81
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=22.02 E-value=50 Score=34.19 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=19.8
Q ss_pred EEeeeEEecCCCceEEEEeeC-CCCC
Q psy9480 315 ILGFDILIDSTMKPFLLEVNR-SPSF 339 (395)
Q Consensus 315 l~G~D~llD~~~kpwLLEVN~-~P~l 339 (395)
.-.+||.+|.++ +.|+|.|+ .|+.
T Consensus 314 ~gRfDf~~dg~g-~KllE~NaDTPt~ 338 (619)
T 2io8_A 314 TGRMDFCMDERG-LKVYEYNADSASC 338 (619)
T ss_dssp EEEEEEEEETTE-EEEEEEECSSCCC
T ss_pred EEEEEEEEeCCe-eEEEEEeCCchHH
Confidence 337999999998 99999999 4544
No 82
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=21.66 E-value=64 Score=33.61 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=20.0
Q ss_pred EeeeEEecCC-CceEEEEeeC-CCCC
Q psy9480 316 LGFDILIDST-MKPFLLEVNR-SPSF 339 (395)
Q Consensus 316 ~G~D~llD~~-~kpwLLEVN~-~P~l 339 (395)
-.|||.+|.+ +.+.|+|.|+ .|+.
T Consensus 327 gRfDf~~dg~~g~~KllE~NADTPt~ 352 (652)
T 2vob_A 327 GRFDFAFNNETGEVKCFEYNADSAST 352 (652)
T ss_dssp EEEEEEECTTTCCEEEEEEETTCCTT
T ss_pred EEEEEEEcCCCCceEEEEEcCCCchH
Confidence 3799999987 7899999999 5544
Done!