RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9480
         (395 letters)



>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain
           {Pseudomonas putida [TaxId: 303]}
          Length = 236

 Score = 27.3 bits (60), Expect = 2.9
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 111 EDYDFYPRSWSL--PYQQEDFLSYVREHPHQVFISKPSRGAEGKG 153
           ++  F  R  +        D+ + +   P Q  +S P   +E  G
Sbjct: 4   DNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTG 48


>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
           ATP-binding domain {Thermus thermophilus [TaxId: 274]}
          Length = 192

 Score = 26.9 bits (58), Expect = 4.1
 Identities = 7/36 (19%), Positives = 11/36 (30%)

Query: 304 HYHHNVSASFEILGFDILIDSTMKPFLLEVNRSPSF 339
                  A    +    L +S     + EVN +  F
Sbjct: 133 LSVKAAEAVGGGVVAVDLFESERGLLVNEVNHTMEF 168


>d1qh4a1 a.83.1.1 (A:2-102) Creatine kinase, N-domain {Chicken
          (Gallus gallus), brain-type [TaxId: 9031]}
          Length = 101

 Score = 24.7 bits (54), Expect = 8.0
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 21 ALRPRPKEATINLKRCMYKIVEDVATL--MGMGIVRDDEEPWDVYWSDFSVSTVMSKSME 78
           LR R   +   L   +   V++      M +G V  DEE ++V + +          +E
Sbjct: 40 KLRDRQTSSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYEV-FKEL-----FDPVIE 93

Query: 79 VYH 81
            H
Sbjct: 94 DRH 96


>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
           C-domain {Enterococcus faecium [TaxId: 1352]}
          Length = 211

 Score = 25.5 bits (54), Expect = 9.8
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 315 ILGFDILIDSTMKPFLLEVNRSPSF 339
           +   D+ +    +  L EVN  P F
Sbjct: 157 LARVDMFLQDNGRIVLNEVNTLPGF 181


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,496,008
Number of extensions: 71900
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 12
Length of query: 395
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,213,086
Effective search space: 373630488
Effective search space used: 373630488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)