BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9483
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RS8|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Ribose
pdb|3RS9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RSF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
pdb|3RSQ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
pdb|3RSS|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
pdb|3RT7|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Glucose
pdb|3RT9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A
pdb|3RTA|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Acetyl
Coenzyme A
pdb|3RTC|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad And
Atp.
pdb|3RTD|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
And Adp.
pdb|3RTE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
And Atp.
pdb|3RTG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A And Atp
pdb|3RU3|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
And Atp.
pdb|3RRB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Amp
pdb|3RRE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Adp
pdb|3RRF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Atp
pdb|3RRJ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RSG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad.
pdb|3RTB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Adenosine-3'-5'-Diphosphate
pdb|3RU2|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
Length = 502
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 21 AVPILKNY-----SPELIVLPHYLDRN----DSVDHIMYWMNRMHSVLIGPGLGTEPLVQ 71
AVP +N PELI +P ++ ++ + + V IGPGLG V+
Sbjct: 278 AVPFPQNLIATSRFPELISVPIDTEKGFFSLQNLQECLELSKDVDVVAIGPGLGNNEHVR 337
Query: 72 SNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSGS- 130
V + L+ P VIDAD + ++ ++++ + P LTP+ E L+ +
Sbjct: 338 EFVNEFLKTLEK-----PAVIDADAINVL--DTSVLKERKSPAVLTPHPGEMARLVKKTV 390
Query: 131 -------EVNAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRRCGGQGDLVAG 182
E+ + K+ + +++K ++ + + +L GN+ GG GD++ G
Sbjct: 391 GDVKYNYELAEEFAKEN--DCVLVLKSATTIVTDGEKTLFNITGNTGLSKGGSGDVLTG 447
>pdb|2AX3|A Chain A, Crystal Structure Of A Putative Carbohydrate Kinase
(Tm0922) From Thermotoga Maritima Msb8 At 2.25 A
Resolution
Length = 502
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 21 AVPILKNY-----SPELIVLPHYLDRN----DSVDHIMYWMNRMHSVLIGPGLGTEPLVQ 71
AVP +N PELI +P ++ ++ + + V IGPGLG V+
Sbjct: 278 AVPFPQNLIATSRFPELISVPIDTEKGFFSLQNLQECLELSKDVDVVAIGPGLGNNEHVR 337
Query: 72 SNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSGS- 130
V + L+ P VIDAD + ++ ++++ + P LTP+ E L+ +
Sbjct: 338 EFVNEFLKTLEK-----PAVIDADAINVL--DTSVLKERKSPAVLTPHPGEXARLVKKTV 390
Query: 131 -------EVNAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRRCGGQGDLVAG 182
E+ + K+ + +++K ++ + + +L GN+ GG GD++ G
Sbjct: 391 GDVKYNYELAEEFAKEN--DCVLVLKSATTIVTDGEKTLFNITGNTGLSKGGSGDVLTG 447
>pdb|3RPH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+.
pdb|3RPZ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadph
pdb|3RQ2|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadh
pdb|3RQ5|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Coa
pdb|3RQ6|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
Adp-Ribose
pdb|3RQ8|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RQH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P6-Di(Adenosine-5') Hexaphosphate
pdb|3RQQ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RQX|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
Length = 279
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 23/132 (17%)
Query: 57 SVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYL 116
++ IGPGL P +S ++ H L A + P+++DA L +P GPV L
Sbjct: 101 AIAIGPGL---PQTESVQQAVDHVLTA---DCPVILDAGALA-KRTYP----KREGPVIL 149
Query: 117 TPNKREYENLLSGSEVN------AAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSW 170
TP+ E+ + +G VN A Y K+ L ++ V+K NQ + +G+ W
Sbjct: 150 TPHPGEFFRM-TGVPVNELQKKRAEYAKEWAAQLQTVI-----VLKGNQTVIAFPDGDCW 203
Query: 171 RRCGGQGDLVAG 182
G G L G
Sbjct: 204 LNPTGNGALAKG 215
>pdb|3BGK|A Chain A, The Crystal Structure Of Hypothetic Protein Smu.573 From
Streptococcus Mutans
Length = 311
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 12/144 (8%)
Query: 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPG 105
D + + VL GPGL + L Q+ + ++ L+ID + L+A+
Sbjct: 117 DRLSEQITAADVVLXGPGLAEDDLAQTTFDVVWQAIEPKQT---LIIDGSAINLLAKRKP 173
Query: 106 LIQDYRGPVYLTPNKREYENLLSG----SEVNAA-YIKQGH-PNLTVIV-KGHEDVIKNN 158
I + + LTP+++E+E L SG ++ AA H P T++V K H+ I
Sbjct: 174 AIWPTK-QIILTPHQKEWERL-SGLTIPEQIEAATQTALAHFPKETILVAKSHQTKIYQG 231
Query: 159 QISLTCKEGNSWRRCGGQGDLVAG 182
Q + G ++ GG GD +AG
Sbjct: 232 QKIGHIQVGGPYQATGGXGDTLAG 255
>pdb|1KYH|A Chain A, Structure Of Bacillus Subtilis Yxko, A Member Of The
Upf0031 Family And A Putative Kinase
Length = 276
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 23/130 (17%)
Query: 57 SVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYL 116
++ IGPGL P +S ++ H L A + P+++DA L GPV L
Sbjct: 98 AIAIGPGL---PQTESVQQAVDHVLTA---DCPVILDAGALAKRT-----YPKREGPVIL 146
Query: 117 TPNKREYENLLSGSEVN------AAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSW 170
TP+ E+ +G VN A Y K+ L ++ V+K NQ + +G+ W
Sbjct: 147 TPHPGEFFRX-TGVPVNELQKKRAEYAKEWAAQLQTVI-----VLKGNQTVIAFPDGDCW 200
Query: 171 RRCGGQGDLV 180
G G L
Sbjct: 201 LNPTGNGALA 210
>pdb|3A24|A Chain A, Crystal Structure Of Bt1871 Retaining Glycosidase
pdb|3A24|B Chain B, Crystal Structure Of Bt1871 Retaining Glycosidase
Length = 641
Score = 33.1 bits (74), Expect = 0.084, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 88 VPLVIDA-DGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSGSEVNAAYIKQ----GHP 142
+PLV+DA DG+K+ L ++Y G +YL+ + E N LS ++A Y K+ GH
Sbjct: 172 LPLVVDAGDGVKVCITESDL-ENYPG-LYLSAS--EGANRLS--SMHAPYPKRTVQGGHN 225
Query: 143 NLTVIVKGHEDVI 155
L ++VK HED I
Sbjct: 226 QLQMLVKEHEDYI 238
>pdb|3GDB|A Chain A, Crystal Structure Of Spr0440 Glycoside Hydrolase Domain,
Endo-D From Streptococcus Pneumoniae R6
Length = 937
Score = 30.0 bits (66), Expect = 0.77, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 96 GLKLVAEHPGLIQDYR---GPVYLTPNKREYENLLSGSEVNAAYIKQGHPNLTVIVKGHE 152
+KL EH G ++DY+ G + ++ N +E ++ S S V + V KG++
Sbjct: 661 AVKLFFEHEGAVKDYQFNLGQLTISDNHQEPQSPTSFSVVKQSLKNAQEAEAVVQFKGNK 720
Query: 153 DVIKNNQISLTCKEGNSWRRCGG 175
D + + K+G+SW+ G
Sbjct: 721 DA---DFYEVYEKDGDSWKLLTG 740
>pdb|2W91|A Chain A, Structure Of A Streptococcus Pneumoniae Family 85
Glycoside Hydrolase, Endo-D.
pdb|2W92|A Chain A, Structure Of A Streptococcus Pneumoniae Family 85
Glycoside Hydrolase, Endo-D, In Complex With
Nag-Thiazoline
Length = 653
Score = 30.0 bits (66), Expect = 0.77, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 96 GLKLVAEHPGLIQDYR---GPVYLTPNKREYENLLSGSEVNAAYIKQGHPNLTVIVKGHE 152
+KL EH G ++DY+ G + ++ N +E ++ S S V + V KG++
Sbjct: 510 AVKLFFEHEGAVKDYQFNLGQLTISDNHQEPQSPTSFSVVKQSLKNAQEAEAVVQFKGNK 569
Query: 153 DVIKNNQISLTCKEGNSWRRCGG 175
D + + K+G+SW+ G
Sbjct: 570 DA---DFYEVYEKDGDSWKLLTG 589
>pdb|3DPG|A Chain A, Sgrai With Noncognate Dna Bound
pdb|3DPG|B Chain B, Sgrai With Noncognate Dna Bound
pdb|3DVO|A Chain A, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|B Chain B, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|C Chain C, Sgrai With Cognate Dna And Calcium Bound
pdb|3DVO|D Chain D, Sgrai With Cognate Dna And Calcium Bound
pdb|3DW9|A Chain A, Sgrai With Cognate Dna And Manganese Bound
pdb|3DW9|B Chain B, Sgrai With Cognate Dna And Manganese Bound
pdb|3MQ6|A Chain A, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|B Chain B, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|C Chain C, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|D Chain D, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|E Chain E, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|F Chain F, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|G Chain G, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQ6|H Chain H, Domain Swapped Sgrai With Dna And Calcium Bound
pdb|3MQY|A Chain A, Sgrai With Cleaved Dna And Magnesium Bound
pdb|3MQY|B Chain B, Sgrai With Cleaved Dna And Magnesium Bound
pdb|3N78|A Chain A, Sgrai Bound To Secondary Site Dna And Mg(Ii)
pdb|3N78|B Chain B, Sgrai Bound To Secondary Site Dna And Mg(Ii)
pdb|3N7B|A Chain A, Sgrai Bound To Secondary Site Dna And Ca(Ii)
pdb|3N7B|B Chain B, Sgrai Bound To Secondary Site Dna And Ca(Ii)
Length = 338
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRG 112
R +S+++G G ++P +S + + A LN+P D L LV E +I+++R
Sbjct: 115 RWNSLMVGEGWRSQPRYSRPTLSPSPRRQVAVLNLPRSFDWVSL-LVPESQEVIEEFRA 172
>pdb|3U0L|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 1, Ph 4.5
pdb|3U0M|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 1, Ph 8.5
pdb|3U0N|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 2
Length = 230
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 2 GGILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIG 61
GG L C+ VT + G + + P + + H L+R + D+ M+ + R H+V
Sbjct: 170 GGHLSCSFVTTYRSKKTVGNIKM-----PGIHAVSHRLERLEESDNEMFVVQREHAVAKF 224
Query: 62 PGLG 65
GLG
Sbjct: 225 AGLG 228
>pdb|2R3B|A Chain A, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.80 A
Resolution
pdb|2R3B|B Chain B, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.80 A
Resolution
pdb|2R3E|A Chain A, Crystal Structure Of A Ribokinase-Like Superfamily Protein
(Ef1790) From Enterococcus Faecalis V583 At 1.95 A
Resolution
Length = 310
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 58 VLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLT 117
+LIGPGLG + Q + ++ + + L+ID + L ++ Y V T
Sbjct: 115 ILIGPGLGLDATAQQILKXVLAQHQKQQW---LIIDGSAITLFSQG-NFSLTYPEKVVFT 170
Query: 118 PNKREYENL----LSGSEVNAAYIKQGHPNLTVIVKGHEDVI 155
P++ E++ L + + +Q T+++K H I
Sbjct: 171 PHQXEWQRLSHLPIEQQTLANNQRQQAKLGSTIVLKSHRTTI 212
>pdb|1QHD|A Chain A, Crystal Structure Of Vp6, The Major Capsid Protein Of
Group A Rotavirus
Length = 398
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 88 VPLVIDADGL---KLVAEHPGLIQDYRGPVYLTPNKREYENLLSGSEVNAAYIKQGHPNL 144
+ L+ DA+ +++ G Y PV L PN E E LL+G +N + G
Sbjct: 224 ITLLPDAERFSFPRVITSADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQARFG---- 279
Query: 145 TVIVKGHEDV 154
T+I + + +
Sbjct: 280 TIIARNFDTI 289
>pdb|3GZU|C Chain C, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|D Chain D, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|E Chain E, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|O Chain O, Vp7 Recoated Rotavirus Dlp
Length = 397
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 88 VPLVIDADGL---KLVAEHPGLIQDYRGPVYLTPNKREYENLLSGSEVNAAYIKQGHPNL 144
+ L+ DA+ +++ G Y PV L PN E E LL+G +N + G
Sbjct: 223 ITLLPDAERFSFPRVITSADGATTWYFNPVILRPNNVEIEFLLNGQIINTYQARFG---- 278
Query: 145 TVIVKGHEDV 154
T+I + + +
Sbjct: 279 TIIARNFDTI 288
>pdb|3KZ4|C Chain C, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|D Chain D, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|E Chain E, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|F Chain F, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|G Chain G, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|H Chain H, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|I Chain I, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|J Chain J, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|K Chain K, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|L Chain L, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|M Chain M, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|N Chain N, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|O Chain O, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|C Chain C, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|D Chain D, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|E Chain E, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|F Chain F, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|G Chain G, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|H Chain H, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|I Chain I, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|J Chain J, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|K Chain K, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|L Chain L, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|M Chain M, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|N Chain N, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|O Chain O, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 397
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 88 VPLVIDADGL---KLVAEHPGLIQDYRGPVYLTPNKREYENLLSGSEVNAAYIKQGHPNL 144
+ L+ DA+ +++ G Y PV L PN E E LL+G +N + G
Sbjct: 223 ITLLPDAERFSFPRVINSADGATTWYFNPVILRPNNVEVEFLLNGQIINTYQARFG---- 278
Query: 145 TVIVKGHEDV 154
T+I + + +
Sbjct: 279 TIIARNFDTI 288
>pdb|3N09|C Chain C, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|D Chain D, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|E Chain E, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3N09|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
Length = 397
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 88 VPLVIDADGL---KLVAEHPGLIQDYRGPVYLTPNKREYENLLSGSEVNAAYIKQGHPNL 144
+ L+ DA+ +++ G Y PV L PN E E LL+G +N + G
Sbjct: 223 ITLLPDAERFSFPRVINSADGATTWYFNPVILRPNNVEVEFLLNGQIINTYQARFG---- 278
Query: 145 TVIVKGHEDV 154
T+I + + +
Sbjct: 279 TIIARNFDTI 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,154,218
Number of Sequences: 62578
Number of extensions: 252216
Number of successful extensions: 676
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 19
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)