Query psy9483
Match_columns 186
No_of_seqs 108 out of 1051
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:34:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01256 Carb_kinase: Carbohyd 100.0 3.2E-46 6.9E-51 311.1 14.3 171 2-185 18-196 (242)
2 COG0063 Predicted sugar kinase 100.0 4.4E-43 9.6E-48 297.5 15.3 173 2-185 52-233 (284)
3 PRK10565 putative carbohydrate 100.0 1.9E-38 4.2E-43 288.3 16.5 168 2-186 274-450 (508)
4 KOG3974|consensus 100.0 1.6E-37 3.5E-42 256.6 14.0 180 3-186 51-238 (306)
5 cd01171 YXKO-related B.subtili 100.0 6.6E-31 1.4E-35 218.7 16.4 172 3-185 29-209 (254)
6 TIGR00196 yjeF_cterm yjeF C-te 100.0 5.6E-28 1.2E-32 203.7 16.9 169 3-185 45-221 (272)
7 TIGR00694 thiM hydroxyethylthi 99.9 2.3E-25 4.9E-30 186.2 11.8 137 44-185 39-195 (249)
8 PRK09355 hydroxyethylthiazole 99.9 1.2E-23 2.6E-28 177.1 13.2 137 44-185 44-200 (263)
9 COG2145 ThiM Hydroxyethylthiaz 99.9 4.8E-23 1E-27 171.1 10.8 139 43-186 44-202 (265)
10 PF02110 HK: Hydroxyethylthiaz 99.9 7.9E-23 1.7E-27 170.4 8.8 135 46-185 41-195 (246)
11 cd01170 THZ_kinase 4-methyl-5- 99.8 2.1E-20 4.5E-25 155.8 12.4 136 45-185 40-196 (242)
12 COG0351 ThiD Hydroxymethylpyri 99.6 1.1E-14 2.3E-19 122.4 10.1 163 7-185 32-219 (263)
13 PTZ00493 phosphomethylpyrimidi 99.4 2.1E-12 4.6E-17 111.8 10.7 171 4-185 30-259 (321)
14 PRK06427 bifunctional hydroxy- 99.3 6.5E-12 1.4E-16 105.1 9.4 161 8-185 34-222 (266)
15 TIGR00097 HMP-P_kinase phospho 99.3 1.5E-11 3.3E-16 102.6 10.9 161 6-185 26-214 (254)
16 PF08543 Phos_pyr_kin: Phospho 99.3 2.9E-12 6.2E-17 106.8 4.3 162 7-185 20-208 (246)
17 cd01169 HMPP_kinase 4-amino-5- 99.2 1.2E-10 2.6E-15 95.7 11.7 161 9-185 30-215 (242)
18 PRK12616 pyridoxal kinase; Rev 99.2 1.4E-10 3E-15 97.8 9.1 164 6-185 31-223 (270)
19 PLN02898 HMP-P kinase/thiamin- 99.1 2.7E-10 5.8E-15 103.9 10.1 124 54-185 78-227 (502)
20 PRK14713 multifunctional hydro 99.1 1.6E-10 3.4E-15 106.2 8.5 163 7-185 58-246 (530)
21 PRK09517 multifunctional thiam 99.1 2.8E-10 6.1E-15 108.5 10.5 161 7-185 270-458 (755)
22 PRK12412 pyridoxal kinase; Rev 99.0 1.6E-09 3.4E-14 91.3 9.8 163 7-185 30-220 (268)
23 cd01173 pyridoxal_pyridoxamine 99.0 2.7E-09 5.8E-14 88.6 10.5 130 53-185 71-225 (254)
24 PRK08176 pdxK pyridoxal-pyrido 99.0 5.8E-09 1.3E-13 88.5 12.3 130 53-185 87-240 (281)
25 PTZ00347 phosphomethylpyrimidi 99.0 8.4E-09 1.8E-13 94.2 12.4 161 8-185 260-452 (504)
26 PRK07105 pyridoxamine kinase; 98.9 3.5E-08 7.6E-13 83.6 12.8 168 8-185 34-229 (284)
27 PRK08573 phosphomethylpyrimidi 98.8 5E-08 1.1E-12 88.1 10.7 164 6-185 30-218 (448)
28 KOG2598|consensus 98.8 1.9E-08 4.1E-13 89.4 7.3 129 52-185 88-257 (523)
29 PRK05756 pyridoxamine kinase; 98.7 2.3E-07 5.1E-12 78.6 13.1 130 53-185 73-229 (286)
30 PRK12413 phosphomethylpyrimidi 98.7 3.1E-07 6.6E-12 76.3 13.0 127 54-185 68-216 (253)
31 PLN02978 pyridoxal kinase 98.7 1.6E-07 3.5E-12 80.9 10.9 129 54-185 86-240 (308)
32 cd00287 ribokinase_pfkB_like r 98.6 7.7E-07 1.7E-11 69.9 12.5 124 55-184 58-191 (196)
33 COG2240 PdxK Pyridoxal/pyridox 98.6 3.9E-07 8.4E-12 77.5 10.5 131 51-185 70-224 (281)
34 TIGR00687 pyridox_kin pyridoxa 98.5 2.2E-06 4.7E-11 72.6 13.3 130 53-185 73-230 (286)
35 PTZ00344 pyridoxal kinase; Pro 98.5 1.9E-06 4.2E-11 73.5 12.2 129 54-185 77-233 (296)
36 COG1105 FruK Fructose-1-phosph 98.1 3.8E-05 8.2E-10 66.4 11.6 131 45-184 120-260 (310)
37 TIGR02198 rfaE_dom_I rfaE bifu 98.0 0.00017 3.6E-09 61.2 13.7 126 48-184 137-272 (315)
38 PRK11316 bifunctional heptose 97.9 0.00026 5.6E-09 64.0 14.0 125 48-185 137-271 (473)
39 cd01164 FruK_PfkB_like 1-phosp 97.9 0.00029 6.3E-09 59.1 12.4 123 51-183 125-257 (289)
40 cd01172 RfaE_like RfaE encodes 97.9 0.00055 1.2E-08 57.6 13.8 124 48-184 128-264 (304)
41 KOG2599|consensus 97.8 0.0001 2.2E-09 62.5 8.1 129 53-185 80-234 (308)
42 cd01174 ribokinase Ribokinase 97.8 0.00099 2.1E-08 55.7 13.6 128 45-184 120-256 (292)
43 TIGR03168 1-PFK hexose kinase, 97.7 0.00073 1.6E-08 57.1 12.0 126 50-184 123-257 (303)
44 COG2870 RfaE ADP-heptose synth 97.6 0.00055 1.2E-08 61.0 10.4 125 45-185 134-270 (467)
45 cd01166 KdgK 2-keto-3-deoxyglu 97.6 0.00079 1.7E-08 56.2 10.7 131 51-184 121-263 (294)
46 cd01167 bac_FRK Fructokinases 97.6 0.00098 2.1E-08 55.7 11.1 133 50-184 116-257 (295)
47 PRK13508 tagatose-6-phosphate 97.5 0.0025 5.5E-08 54.1 12.3 128 49-183 121-258 (309)
48 PRK09513 fruK 1-phosphofructok 97.5 0.0031 6.8E-08 53.6 12.8 127 49-184 126-261 (312)
49 cd01946 ribokinase_group_C Rib 97.4 0.002 4.3E-08 53.8 11.0 124 50-184 110-240 (277)
50 PRK11142 ribokinase; Provision 97.4 0.004 8.7E-08 52.5 12.9 125 48-184 126-259 (306)
51 TIGR03828 pfkB 1-phosphofructo 97.4 0.003 6.5E-08 53.1 12.0 125 50-184 123-257 (304)
52 cd01168 adenosine_kinase Adeno 97.4 0.002 4.4E-08 54.6 10.5 129 51-184 142-279 (312)
53 PRK10294 6-phosphofructokinase 97.4 0.0063 1.4E-07 51.7 13.2 125 52-184 128-262 (309)
54 TIGR02152 D_ribokin_bact ribok 97.3 0.0063 1.4E-07 51.0 12.5 129 45-184 115-252 (293)
55 TIGR01231 lacC tagatose-6-phos 97.3 0.0065 1.4E-07 51.6 12.6 129 49-184 121-259 (309)
56 PLN02341 pfkB-type carbohydrat 97.2 0.0035 7.6E-08 57.1 10.8 133 49-184 219-363 (470)
57 PLN02379 pfkB-type carbohydrat 97.2 0.0072 1.6E-07 53.3 11.8 127 50-183 173-310 (367)
58 cd01941 YeiC_kinase_like YeiC- 97.0 0.02 4.2E-07 47.7 12.9 127 48-184 122-261 (288)
59 cd01944 YegV_kinase_like YegV- 97.0 0.011 2.4E-07 49.4 11.1 130 52-184 123-260 (289)
60 cd01945 ribokinase_group_B Rib 97.0 0.022 4.7E-07 47.4 12.6 122 51-184 123-248 (284)
61 PRK09434 aminoimidazole ribosi 97.0 0.014 2.9E-07 49.3 11.3 131 52-184 117-257 (304)
62 PRK09850 pseudouridine kinase; 96.9 0.025 5.5E-07 48.1 12.6 125 48-184 128-262 (313)
63 PLN02813 pfkB-type carbohydrat 96.9 0.015 3.2E-07 52.4 11.3 131 50-184 220-360 (426)
64 PTZ00292 ribokinase; Provision 96.9 0.025 5.3E-07 48.4 12.2 127 50-183 142-279 (326)
65 PLN02323 probable fructokinase 96.6 0.031 6.7E-07 47.9 11.0 129 51-182 133-272 (330)
66 cd01942 ribokinase_group_A Rib 96.4 0.036 7.7E-07 45.9 9.8 121 50-184 122-248 (279)
67 PRK09954 putative kinase; Prov 96.3 0.089 1.9E-06 45.8 12.0 126 47-184 180-315 (362)
68 PTZ00247 adenosine kinase; Pro 96.2 0.048 1E-06 47.2 9.8 129 51-184 156-304 (345)
69 PF00294 PfkB: pfkB family car 95.4 0.063 1.4E-06 44.7 7.2 130 49-184 122-264 (301)
70 COG0524 RbsK Sugar kinases, ri 95.4 0.3 6.5E-06 41.2 11.4 130 51-184 126-263 (311)
71 PRK15074 inosine/guanosine kin 95.3 0.17 3.6E-06 45.9 10.0 99 51-152 183-288 (434)
72 cd01937 ribokinase_group_D Rib 95.2 0.3 6.5E-06 39.9 10.6 120 51-184 104-228 (254)
73 cd01940 Fructoselysine_kinase_ 93.7 1.1 2.5E-05 36.6 10.7 119 51-183 109-231 (264)
74 PLN02548 adenosine kinase 93.1 0.99 2.1E-05 38.6 9.8 126 51-183 145-292 (332)
75 cd01947 Guanosine_kinase_like 93.0 1.5 3.3E-05 36.0 10.4 113 51-183 118-233 (265)
76 PLN02543 pfkB-type carbohydrat 89.9 3.7 8.1E-05 37.9 10.5 77 51-129 263-344 (496)
77 PLN02967 kinase 89.3 6.3 0.00014 37.2 11.6 77 51-129 332-413 (581)
78 cd01943 MAK32 MAK32 kinase. M 89.1 3.5 7.5E-05 35.6 9.2 127 52-183 118-273 (328)
79 PRK00366 ispG 4-hydroxy-3-meth 82.2 5.9 0.00013 35.2 7.1 82 4-93 50-136 (360)
80 PRK09813 fructoselysine 6-kina 81.4 14 0.0003 30.3 8.8 114 51-183 110-228 (260)
81 PLN02630 pfkB-type carbohydrat 80.4 9.5 0.00021 33.3 7.8 66 111-184 180-247 (335)
82 cd05565 PTS_IIB_lactose PTS_II 79.5 2.4 5.3E-05 30.6 3.2 79 6-98 5-84 (99)
83 COG1440 CelA Phosphotransferas 79.4 3.5 7.6E-05 30.1 4.0 84 4-101 4-88 (102)
84 COG0821 gcpE 1-hydroxy-2-methy 75.4 12 0.00026 33.1 6.8 95 4-110 44-143 (361)
85 TIGR00853 pts-lac PTS system, 75.4 3.6 7.9E-05 29.3 3.1 81 6-100 8-89 (95)
86 cd00288 Pyruvate_Kinase Pyruva 73.6 18 0.0004 33.3 8.0 84 5-92 183-277 (480)
87 PRK05826 pyruvate kinase; Prov 68.3 28 0.00062 32.0 8.0 85 5-93 182-278 (465)
88 PLN02623 pyruvate kinase 64.9 36 0.00078 32.3 8.0 83 6-92 288-381 (581)
89 COG1058 CinA Predicted nucleot 62.8 7.5 0.00016 32.9 2.9 50 45-102 51-102 (255)
90 cd05564 PTS_IIB_chitobiose_lic 62.5 12 0.00025 26.6 3.5 81 6-100 4-85 (96)
91 TIGR00612 ispG_gcpE 1-hydroxy- 61.0 50 0.0011 29.2 7.7 81 4-92 42-126 (346)
92 PRK06354 pyruvate kinase; Prov 58.3 57 0.0012 31.0 8.2 84 5-92 187-282 (590)
93 COG2022 ThiG Uncharacterized e 56.2 12 0.00025 31.6 2.9 28 60-94 162-189 (262)
94 KOG1224|consensus 55.1 40 0.00087 31.9 6.4 52 29-81 40-93 (767)
95 PTZ00300 pyruvate kinase; Prov 55.0 72 0.0016 29.3 8.1 84 5-92 156-250 (454)
96 TIGR01768 GGGP-family geranylg 53.2 32 0.0007 28.5 5.1 70 54-129 27-102 (223)
97 PF04551 GcpE: GcpE protein; 52.6 52 0.0011 29.3 6.5 82 4-93 39-137 (359)
98 PRK10425 DNase TatD; Provision 51.9 46 0.001 27.9 6.0 49 44-94 73-128 (258)
99 TIGR00200 cinA_nterm competenc 51.7 31 0.00067 31.2 5.1 49 46-100 51-99 (413)
100 TIGR01769 GGGP geranylgeranylg 51.4 71 0.0015 26.1 6.8 65 55-125 25-96 (205)
101 PRK09590 celB cellobiose phosp 51.3 25 0.00055 25.5 3.8 86 4-103 4-92 (104)
102 TIGR00381 cdhD CO dehydrogenas 51.2 54 0.0012 29.5 6.5 83 54-153 153-250 (389)
103 PLN03139 formate dehydrogenase 49.9 33 0.00071 30.7 5.0 9 113-121 334-342 (386)
104 PRK09206 pyruvate kinase; Prov 49.7 95 0.0021 28.7 8.0 85 5-92 181-276 (470)
105 COG1646 Predicted phosphate-bi 49.4 49 0.0011 27.8 5.5 70 54-129 41-117 (240)
106 PRK08605 D-lactate dehydrogena 48.1 29 0.00064 30.1 4.3 22 54-75 227-248 (332)
107 PRK15469 ghrA bifunctional gly 47.9 49 0.0011 28.6 5.6 9 113-121 269-277 (312)
108 PF00117 GATase: Glutamine ami 47.6 58 0.0013 25.2 5.6 62 23-91 15-76 (192)
109 PF02826 2-Hacid_dh_C: D-isome 47.4 21 0.00045 27.9 3.0 60 54-121 118-178 (178)
110 PF07302 AroM: AroM protein; 46.2 1.6E+02 0.0035 24.4 8.1 42 51-98 148-190 (221)
111 cd01939 Ketohexokinase Ketohex 45.9 1.7E+02 0.0037 24.1 10.6 119 52-182 125-256 (290)
112 PRK15409 bifunctional glyoxyla 45.1 32 0.00068 29.9 4.0 9 113-121 279-287 (323)
113 PRK07574 formate dehydrogenase 45.0 48 0.001 29.7 5.2 9 113-121 327-335 (385)
114 PRK12475 thiamine/molybdopteri 44.6 1.6E+02 0.0035 25.7 8.4 81 4-94 42-148 (338)
115 PRK13243 glyoxylate reductase; 43.9 33 0.00072 29.8 4.0 9 113-121 282-290 (333)
116 cd00885 cinA Competence-damage 43.2 25 0.00053 27.7 2.8 48 46-101 50-99 (170)
117 PF05690 ThiG: Thiazole biosyn 42.3 18 0.0004 30.4 2.0 31 60-98 155-185 (247)
118 PLN02274 inosine-5'-monophosph 41.7 82 0.0018 29.2 6.4 57 4-65 255-321 (505)
119 PRK05395 3-dehydroquinate dehy 40.6 38 0.00082 26.3 3.4 41 44-91 57-97 (146)
120 PRK10812 putative DNAse; Provi 39.9 1.1E+02 0.0024 25.6 6.5 49 44-94 76-131 (265)
121 TIGR01302 IMP_dehydrog inosine 36.8 2.2E+02 0.0047 25.9 8.3 84 4-94 231-334 (450)
122 PRK13015 3-dehydroquinate dehy 36.7 47 0.001 25.8 3.4 41 44-91 57-97 (146)
123 PRK06487 glycerate dehydrogena 36.4 92 0.002 26.8 5.6 9 113-121 278-286 (317)
124 PRK04169 geranylgeranylglycery 36.2 1.1E+02 0.0024 25.5 5.8 70 53-128 31-106 (232)
125 cd00466 DHQase_II Dehydroquina 35.6 47 0.001 25.6 3.2 41 44-91 55-95 (140)
126 TIGR01088 aroQ 3-dehydroquinat 35.4 53 0.0011 25.4 3.4 41 44-91 55-95 (141)
127 PRK13170 hisH imidazole glycer 35.3 96 0.0021 24.6 5.2 36 52-90 36-73 (196)
128 PF01220 DHquinase_II: Dehydro 34.9 41 0.00089 25.9 2.8 41 44-91 56-96 (140)
129 PTZ00314 inosine-5'-monophosph 34.7 2.5E+02 0.0053 26.0 8.3 87 3-94 247-351 (495)
130 KOG3009|consensus 34.0 1.7E+02 0.0038 27.3 7.0 64 51-123 422-485 (614)
131 PF03641 Lysine_decarbox: Poss 33.8 2E+02 0.0043 21.4 7.3 82 5-97 8-95 (133)
132 PRK00694 4-hydroxy-3-methylbut 33.5 1.9E+02 0.0042 27.6 7.4 83 4-92 53-163 (606)
133 PRK01215 competence damage-ind 33.4 72 0.0016 26.9 4.3 49 46-100 54-102 (264)
134 PRK09461 ansA cytoplasmic aspa 33.4 69 0.0015 28.0 4.3 44 46-94 73-116 (335)
135 PRK07807 inosine 5-monophospha 32.4 3.3E+02 0.0071 25.2 8.7 86 4-94 234-337 (479)
136 PRK03670 competence damage-ind 31.8 38 0.00083 28.5 2.4 45 48-100 53-100 (252)
137 PRK05096 guanosine 5'-monophos 31.1 3.7E+02 0.008 23.9 8.4 83 8-94 121-220 (346)
138 PRK04452 acetyl-CoA decarbonyl 31.0 1.3E+02 0.0029 26.3 5.7 17 136-153 169-185 (319)
139 PRK06436 glycerate dehydrogena 30.7 1E+02 0.0022 26.6 4.8 15 54-68 200-214 (303)
140 cd00564 TMP_TenI Thiamine mono 30.4 2.3E+02 0.005 21.4 6.5 86 4-98 67-160 (196)
141 PRK08410 2-hydroxyacid dehydro 30.0 1.2E+02 0.0026 26.0 5.3 9 113-121 277-285 (311)
142 TIGR01327 PGDH D-3-phosphoglyc 29.4 74 0.0016 29.5 4.1 9 113-121 271-279 (525)
143 PRK03673 hypothetical protein; 29.1 62 0.0014 29.1 3.4 48 45-100 51-100 (396)
144 COG0084 TatD Mg-dependent DNas 29.0 1.6E+02 0.0034 24.9 5.6 79 43-129 74-170 (256)
145 TIGR01305 GMP_reduct_1 guanosi 28.6 3.6E+02 0.0078 23.9 7.9 82 9-94 121-219 (343)
146 PRK06932 glycerate dehydrogena 28.5 1.1E+02 0.0023 26.4 4.7 9 113-121 280-288 (314)
147 PF00710 Asparaginase: Asparag 28.3 47 0.001 28.6 2.4 43 46-93 64-106 (313)
148 TIGR02356 adenyl_thiF thiazole 27.9 3.1E+02 0.0067 21.8 8.1 79 4-92 39-141 (202)
149 TIGR00519 asnASE_I L-asparagin 27.6 81 0.0018 27.6 3.8 43 46-94 69-111 (336)
150 PF02302 PTS_IIB: PTS system, 27.4 54 0.0012 22.1 2.2 63 57-128 3-67 (90)
151 cd02812 PcrB_like PcrB_like pr 27.3 1.8E+02 0.004 23.9 5.6 72 53-129 24-101 (219)
152 COG0391 Uncharacterized conser 27.1 46 0.001 29.2 2.1 22 44-65 179-200 (323)
153 PRK11790 D-3-phosphoglycerate 27.0 88 0.0019 28.1 4.0 9 113-121 286-294 (409)
154 COG1099 Predicted metal-depend 26.8 2.1E+02 0.0046 24.1 5.8 48 44-94 84-134 (254)
155 TIGR02153 gatD_arch glutamyl-t 26.6 96 0.0021 28.0 4.1 44 46-94 130-174 (404)
156 PF03808 Glyco_tran_WecB: Glyc 25.6 2E+02 0.0043 22.3 5.4 73 23-103 66-143 (172)
157 COG0111 SerA Phosphoglycerate 25.5 1E+02 0.0022 26.9 4.0 9 113-121 276-284 (324)
158 COG0512 PabA Anthranilate/para 25.5 2E+02 0.0044 23.3 5.4 34 53-90 44-77 (191)
159 PF15608 PELOTA_1: PELOTA RNA 25.4 2.4E+02 0.0052 20.5 5.3 29 44-74 24-52 (100)
160 PRK06247 pyruvate kinase; Prov 25.3 3.3E+02 0.0071 25.3 7.4 84 5-92 182-273 (476)
161 PRK06843 inosine 5-monophospha 25.1 4.3E+02 0.0093 23.9 8.0 84 4-94 160-263 (404)
162 cd00381 IMPDH IMPDH: The catal 24.9 4.1E+02 0.009 23.0 7.7 87 3-94 100-204 (325)
163 COG0252 AnsB L-asparaginase/ar 24.7 1.2E+02 0.0026 26.9 4.3 44 45-94 89-134 (351)
164 PRK02048 4-hydroxy-3-methylbut 24.6 3.4E+02 0.0073 26.1 7.4 83 4-92 49-159 (611)
165 PRK11613 folP dihydropteroate 24.4 1.9E+02 0.004 24.8 5.3 32 3-34 104-138 (282)
166 PRK13581 D-3-phosphoglycerate 24.3 98 0.0021 28.7 3.8 9 113-121 272-280 (526)
167 smart00870 Asparaginase Aspara 23.9 1.5E+02 0.0032 25.7 4.7 35 54-93 77-111 (323)
168 PLN02925 4-hydroxy-3-methylbut 23.7 3.2E+02 0.0069 26.8 7.1 83 4-92 118-228 (733)
169 PLN02306 hydroxypyruvate reduc 23.6 1.6E+02 0.0035 26.3 5.0 9 113-121 314-322 (386)
170 TIGR03239 GarL 2-dehydro-3-deo 23.5 3.6E+02 0.0078 22.4 6.8 49 40-90 146-206 (249)
171 PLN02928 oxidoreductase family 23.4 1.2E+02 0.0025 26.7 4.0 9 113-121 305-313 (347)
172 COG1179 Dinucleotide-utilizing 22.8 1.1E+02 0.0025 25.9 3.6 48 49-104 25-72 (263)
173 PF13289 SIR2_2: SIR2-like dom 22.7 2.5E+02 0.0054 20.1 5.2 34 46-80 78-111 (143)
174 PF00478 IMPDH: IMP dehydrogen 22.3 5E+02 0.011 23.0 7.7 85 5-94 116-218 (352)
175 COG3414 SgaB Phosphotransferas 22.0 1.2E+02 0.0026 21.6 3.1 39 58-101 6-44 (93)
176 PRK00549 competence damage-ind 22.0 81 0.0018 28.4 2.8 45 46-98 51-97 (414)
177 PRK05597 molybdopterin biosynt 21.7 5.4E+02 0.012 22.5 7.9 81 4-94 46-150 (355)
178 cd00411 Asparaginase Asparagin 20.9 1.3E+02 0.0028 26.0 3.8 42 46-93 70-111 (323)
179 cd06533 Glyco_transf_WecG_TagA 20.9 2.6E+02 0.0057 21.6 5.2 72 24-103 65-141 (171)
180 TIGR01819 F420_cofD LPPG:FO 2- 20.9 68 0.0015 27.8 1.9 21 44-64 172-192 (297)
181 PRK13125 trpA tryptophan synth 20.3 4.6E+02 0.01 21.4 6.8 87 4-95 96-193 (244)
182 cd07044 CofD_YvcK Family of Co 20.2 71 0.0015 27.8 1.9 21 44-64 164-184 (309)
183 PRK12480 D-lactate dehydrogena 20.2 1.4E+02 0.0031 25.9 3.9 9 113-121 290-298 (330)
No 1
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=100.00 E-value=3.2e-46 Score=311.11 Aligned_cols=171 Identities=30% Similarity=0.502 Sum_probs=141.3
Q ss_pred ccchhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHH
Q psy9483 2 GGILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKL 81 (186)
Q Consensus 2 ~~~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~ 81 (186)
+++|+|+|||+|++++|+++...+++++||+|+++++ +.+.. ++.+..+++|+++||||||+++++.+++..+++.
T Consensus 18 a~aAlr~GaGlV~~~~~~~~~~~~~~~~Pe~m~~~~~--~~~~~-~~~~~~~~~~av~iGPGlg~~~~~~~~~~~~~~~- 93 (242)
T PF01256_consen 18 ARAALRSGAGLVTLATPESIAPVIASYSPEAMVSPLP--SDEDV-EILELLEKADAVVIGPGLGRDEETEELLEELLES- 93 (242)
T ss_dssp HHHHHHTT-SEEEEEECGCCHHHHHHHTTTSEEEETT--HCCHH-HHHHHHCH-SEEEE-TT-SSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCcEEEEEcHHHHHHHHhCCceeEEeccc--chhhh-hhHhhhccCCEEEeecCCCCchhhHHHHHHHHhh-
Confidence 3689999999999999999999999999999999983 11223 5677789999999999999999988888777653
Q ss_pred HhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC-C-----hHHHHH-HHHhCCCEEEEEeCCeeE
Q psy9483 82 KAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG-S-----EVNAAY-IKQGHPNLTVIVKGHEDV 154 (186)
Q Consensus 82 ~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~-~-----~~~~a~-~a~~~~~~~vvlKG~~~~ 154 (186)
+.|+|||||||++++.+. .....++|||||++||+||++. . ..+.++ +++++ +++|||||++|+
T Consensus 94 -----~~p~VlDADaL~~l~~~~---~~~~~~~IlTPH~gE~~rL~~~~~~~~~~~~~~a~~~a~~~-~~~vvLKG~~t~ 164 (242)
T PF01256_consen 94 -----DKPLVLDADALNLLAENP---KKRNAPVILTPHPGEFARLLGKSVEIQEDRIEAAREFAKEY-GAVVVLKGAVTI 164 (242)
T ss_dssp -----CSTEEEECHHHHCHHHCC---CCSSSCEEEE-BHHHHHHHHTTTCHHCCSHHHHHHHHHHHH-TSEEEEESTSSE
T ss_pred -----cceEEEehHHHHHHHhcc---ccCCCCEEECCCHHHHHHHhCCcccchhhHHHHHHHHHhhc-CcEEEEeCCCcE
Confidence 789999999999999875 3345679999999999999998 2 245788 99999 599999999999
Q ss_pred EEc-CCeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 155 IKN-NQISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 155 I~~-~~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
|++ +++.|+|.+|||+|+++||||||||+|+
T Consensus 165 I~~p~~~~~~n~~gn~~la~gGsGDvLaGii~ 196 (242)
T PF01256_consen 165 IASPGGRVYVNPTGNPGLATGGSGDVLAGIIA 196 (242)
T ss_dssp EEEETSEEEEE----GGGSSTTHHHHHHHHHH
T ss_pred EEecCcceeEeCCCCCCCCCCCcccHHHHHHH
Confidence 998 7789999999999999999999999996
No 2
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-43 Score=297.55 Aligned_cols=173 Identities=31% Similarity=0.427 Sum_probs=148.1
Q ss_pred ccchhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHH
Q psy9483 2 GGILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKL 81 (186)
Q Consensus 2 ~~~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~ 81 (186)
+.+|+|+|+|+|++++|+++...++++.||+|++++. + ..... ...+.+++|+++||||||+++++.+.+.++++..
T Consensus 52 a~aAl~~GaglV~v~~~~~~~~~~~s~~Pe~mv~~~~-~-~~~~~-~~~~~~~~~avviGpGlG~~~~~~~~~~~~l~~~ 128 (284)
T COG0063 52 ALAALRAGAGLVSLASPPEAASALKSYLPELMVIEVE-G-KKLLE-ERELVERADAVVIGPGLGRDAEGQEALKELLSSD 128 (284)
T ss_pred HHHHHHhCCCeEEEecchhhhhhHhhcCcceeEeecc-c-chhhH-HhhhhccCCEEEECCCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999999888999999999999973 2 11111 1234588999999999999999999999888641
Q ss_pred HhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC--C-----hHHHHH-HHHhCCCEEEEEeCCee
Q psy9483 82 KAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG--S-----EVNAAY-IKQGHPNLTVIVKGHED 153 (186)
Q Consensus 82 ~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~--~-----~~~~a~-~a~~~~~~~vvlKG~~~ 153 (186)
.+|+|+|||||++++.++++.... .+|||||++||+||++. + ..+.++ +++++ +|+|||||+.|
T Consensus 129 -----~~p~ViDADaL~~la~~~~~~~~~--~~VlTPH~gEf~rL~g~~~~~~~~~r~~~a~~~a~~~-~~vvVLKG~~t 200 (284)
T COG0063 129 -----LKPLVLDADALNLLAELPDLLDER--KVVLTPHPGEFARLLGTEVDEIEVDRLEAARELAAKY-GAVVVLKGAVT 200 (284)
T ss_pred -----CCCEEEeCcHHHHHHhCcccccCC--cEEECCCHHHHHHhcCCcccccccchHHHHHHHHHHc-CCEEEEeCCCC
Confidence 289999999999999887665432 29999999999999994 2 245788 99999 59999999999
Q ss_pred EEEcCC-eEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 154 VIKNNQ-ISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 154 ~I~~~~-~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
+|++++ +.++|.+|||+|+++||||||||+|+
T Consensus 201 vI~~~~g~~~~n~~G~~~ma~GGtGDvLaGii~ 233 (284)
T COG0063 201 VIADPDGEVFVNPTGNPGMATGGTGDVLAGIIG 233 (284)
T ss_pred EEEcCCCcEEEcCCCCHHhccCcchHHHHHHHH
Confidence 999976 89999999999999999999999996
No 3
>PRK10565 putative carbohydrate kinase; Provisional
Probab=100.00 E-value=1.9e-38 Score=288.30 Aligned_cols=168 Identities=26% Similarity=0.330 Sum_probs=141.6
Q ss_pred ccchhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHH
Q psy9483 2 GGILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKL 81 (186)
Q Consensus 2 ~~~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~ 81 (186)
+.+|+|+|||+|++++|+++.+.++++.||+|+.+++ .+++.+.++++|+++||||+++++++.+.+ +.+.
T Consensus 274 a~aAlr~GaGlv~~~~~~~~~~~~~~~~Pe~~~~~~~------~~~~~~~~~~~~a~viGpGlg~~~~~~~~~-~~~~-- 344 (508)
T PRK10565 274 GEAALRSGAGLVRVLTRSENIAPLLTARPELMVHELT------PDSLEESLEWADVVVIGPGLGQQEWGKKAL-QKVE-- 344 (508)
T ss_pred HHHHHHhCCCeEEEEeChhhHHHHhhcCceeEEecCC------HhHHHHHhhcCCEEEEeCCCCCCHHHHHHH-HHHH--
Confidence 3689999999999999999999999999999998861 134555668899999999999998776655 3332
Q ss_pred HhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC--ChH-----HHHH-HHHhCCCEEEEEeCCee
Q psy9483 82 KAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG--SEV-----NAAY-IKQGHPNLTVIVKGHED 153 (186)
Q Consensus 82 ~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~--~~~-----~~a~-~a~~~~~~~vvlKG~~~ 153 (186)
+. ++|+||||||+++++..++. ..++|||||++||+||++. +++ +.++ ++++| +++|||||++|
T Consensus 345 -~~--~~P~VLDAdaL~ll~~~~~~----~~~~VLTPh~gE~~rL~~~~~~~v~~~~~~~a~~~a~~~-~~~vvlKG~~~ 416 (508)
T PRK10565 345 -NF--RKPMLWDADALNLLAINPDK----RHNRVITPHPGEAARLLGCSVAEIESDRLLSARRLVKRY-GGVVVLKGAGT 416 (508)
T ss_pred -hc--CCCEEEEchHHHHHhhCccc----cCCeEECCCHHHHHHHhCCChhhhhhhHHHHHHHHHHHh-CCEEEEeCCCc
Confidence 34 78999999999999865431 1368999999999999986 222 3677 99999 69999999999
Q ss_pred EEEcC-CeEEEEcCCCCCCCCCChhHHHHhhhcC
Q psy9483 154 VIKNN-QISLTCKEGNSWRRCGGQGDLVAGHRDI 186 (186)
Q Consensus 154 ~I~~~-~~~~~~~~g~~~la~~GsGDvLaGiia~ 186 (186)
+|+++ ++.|+|.+|||+|+++||||||||+|+.
T Consensus 417 iI~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaa 450 (508)
T PRK10565 417 VIAAEPDALAIIDVGNAGMASGGMGDVLSGIIGA 450 (508)
T ss_pred EEEcCCceEEEECCCCCCCCCCChHHHHHHHHHH
Confidence 99985 6799999999999999999999999973
No 4
>KOG3974|consensus
Probab=100.00 E-value=1.6e-37 Score=256.64 Aligned_cols=180 Identities=39% Similarity=0.640 Sum_probs=155.8
Q ss_pred cchhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHH
Q psy9483 3 GILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLK 82 (186)
Q Consensus 3 ~~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~ 82 (186)
.+++|.||+++++||..+++.++++|+||+||+|+ .+..+..+.+.+++.+.+|+|||||||+++.+...+.++++.++
T Consensus 51 ~sa~~~GaDL~HiFCe~~Aa~vIKsYsPdLIVHP~-l~~~~av~~i~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~ 129 (306)
T KOG3974|consen 51 ISALRVGADLSHIFCEPEAAVVIKSYSPDLIVHPV-LDQENAVDIIEKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLR 129 (306)
T ss_pred HHHHHhccceeeeeechhHHHHHhhcCCceeeccc-ccCCchHhHHHHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999 66555677788889999999999999999999999999999988
Q ss_pred hcCCCCCEEEecccccccccCcc-cccccCCCeEecCCHHHHhhhcCC--ChH----HHHHHHHhCCCEEEEEeCCeeEE
Q psy9483 83 AANLNVPLVIDADGLKLVAEHPG-LIQDYRGPVYLTPNKREYENLLSG--SEV----NAAYIKQGHPNLTVIVKGHEDVI 155 (186)
Q Consensus 83 ~~~~~~p~VlDadal~~l~~~~~-l~~~~~~~~iiTPh~~E~~rL~~~--~~~----~~a~~a~~~~~~~vvlKG~~~~I 155 (186)
+. ++|+|+|||||+++.++++ ++...++ +|+|||.-||+||++. +.. +..+++.+..|++|+.||..|.|
T Consensus 130 ~~--dvP~VIDaDGL~Lv~q~~e~l~~~~~~-viLTPNvvEFkRLcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~i 206 (306)
T KOG3974|consen 130 GK--DVPLVIDADGLWLVEQLPERLIGGYPK-VILTPNVVEFKRLCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDKI 206 (306)
T ss_pred cC--CCcEEEcCCceEehhhchhhhhccCce-eeeCCcHHHHHHHHHHhhccccchHHHHHHHHHhcCeEEEEecCCcee
Confidence 77 9999999999999999987 6655554 9999999999999987 322 24445444438999999999965
Q ss_pred E-cCCeEEEEcCCCCCCCCCChhHHHHhhhcC
Q psy9483 156 K-NNQISLTCKEGNSWRRCGGQGDLVAGHRDI 186 (186)
Q Consensus 156 ~-~~~~~~~~~~g~~~la~~GsGDvLaGiia~ 186 (186)
. ++++.+.+.+..+..+++|+||+|||.+|+
T Consensus 207 ls~~~ev~~~s~eGs~kRcGGQGDiLaGsla~ 238 (306)
T KOG3974|consen 207 LSPDSEVRVCSTEGSLKRCGGQGDILAGSLAT 238 (306)
T ss_pred eCCCCeeEEccCCCCccccCCCcchhhhHHHH
Confidence 5 566789999888889999999999999873
No 5
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.97 E-value=6.6e-31 Score=218.75 Aligned_cols=172 Identities=33% Similarity=0.493 Sum_probs=138.6
Q ss_pred cchhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHH
Q psy9483 3 GILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLK 82 (186)
Q Consensus 3 ~~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~ 82 (186)
.+|+|+|+|+||+++|++....++.+.||+|+.++. . +..+++.+...++|+++||||+++++.....++. ++
T Consensus 29 ~~a~~~G~g~vt~~~~~~~~~~~~~~~pe~i~~~~~-~--~~~~~~~~~~~~~d~v~ig~gl~~~~~~~~i~~~----~~ 101 (254)
T cd01171 29 LAALRAGAGLVTVATPPEAAAVIKSYSPELMVHPLL-E--TDIEELLELLERADAVVIGPGLGRDEEAAEILEK----AL 101 (254)
T ss_pred HHHHHHccCEEEEEECHhhHHHHHhcCceeeEeccc-c--cchHHHHhhhccCCEEEEecCCCCCHHHHHHHHH----HH
Confidence 478999999999999999999999999999999872 2 2235566667889999999999987544444433 33
Q ss_pred hcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC--Ch-----HHHHH-HHHhCCCEEEEEeCCeeE
Q psy9483 83 AANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG--SE-----VNAAY-IKQGHPNLTVIVKGHEDV 154 (186)
Q Consensus 83 ~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~--~~-----~~~a~-~a~~~~~~~vvlKG~~~~ 154 (186)
+. +.|+|+|||+++++....+. ...+.++|||||.+|+++|++. ++ .+.++ +++++ +++||+||..++
T Consensus 102 ~~--~~pvVlDa~~~~~~~~~~~~-~~~~~~~iltPn~~E~~~L~g~~~~~~~~~~~~~a~~l~~~~-~~~vvlkG~~~~ 177 (254)
T cd01171 102 AK--DKPLVLDADALNLLADEPSL-IKRYGPVVLTPHPGEFARLLGALVEEIQADRLAAAREAAAKL-GATVVLKGAVTV 177 (254)
T ss_pred hc--CCCEEEEcHHHHHhhcChhh-hccCCCEEECCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHc-CcEEEEcCCCCE
Confidence 34 78999999999877654322 1234579999999999999996 11 23667 88888 599999999999
Q ss_pred EEcC-CeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 155 IKNN-QISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 155 I~~~-~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
++++ +..+++..+++.++++|+||+|+|+|+
T Consensus 178 i~~~~~~~~~~~~~~~~~~~~GaGD~lag~ia 209 (254)
T cd01171 178 IADPDGRVYVNPTGNPGLATGGSGDVLAGIIA 209 (254)
T ss_pred EECCCCcEEEECCCCcccccCchHHHHHHHHH
Confidence 9975 568899999999999999999999986
No 6
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.96 E-value=5.6e-28 Score=203.66 Aligned_cols=169 Identities=32% Similarity=0.428 Sum_probs=137.2
Q ss_pred cchhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHH
Q psy9483 3 GILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLK 82 (186)
Q Consensus 3 ~~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~ 82 (186)
.+++++|+|+|+++++++....+....||+|..++. +..+++.+.++++|+++||+|+++++... ++++.++
T Consensus 45 l~~~~~g~~~v~~~~~~~~~~~i~~~~pe~~~~~~~----~~~~~~~~~~~~~davvig~Gl~~~~~~~----~l~~~~~ 116 (272)
T TIGR00196 45 LAALRAGAGLVTVAAPENVITLINSVSPELIVHRLG----WKVDEDEELLERYDVVVIGPGLGQDPSFK----KAVEEVL 116 (272)
T ss_pred HHHHHhCCCeEEEEEchhhHHHHhhcCCEEEEecch----hhHHHHHhhhccCCEEEEcCCCCCCHHHH----HHHHHHH
Confidence 468899999999999999888999999999998872 23556667778899999999999876533 3344444
Q ss_pred hcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC-C----h-HHHHH-HHHhCCCEEEEEeCCeeEE
Q psy9483 83 AANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG-S----E-VNAAY-IKQGHPNLTVIVKGHEDVI 155 (186)
Q Consensus 83 ~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~-~----~-~~~a~-~a~~~~~~~vvlKG~~~~I 155 (186)
+. ++|+|+||++..+..... . . ...|+|||||..|+++|++. . + .+.++ +++++ +++|++||.++++
T Consensus 117 ~~--~~pvVlDa~g~~l~~~~~-~-~-~~~~~vItPN~~El~~L~g~~~~~~~~~~~aa~~l~~~~-~~vVv~kG~~~~i 190 (272)
T TIGR00196 117 EL--DKPVVLDADALNLLTYDK-P-K-REGEVILTPHPGEFKRLLGLVNEIQGDRLEAAQDIAQKL-QAVVVLKGAADVI 190 (272)
T ss_pred hc--CCCEEEEhHHHHHHhhcc-c-c-cCCCEEECCCHHHHHHHhCCchhhhhhHHHHHHHHHHHh-CCEEEEcCCCCEE
Confidence 45 789999999997765431 1 1 23579999999999999996 1 1 23677 88899 5999999999999
Q ss_pred EcC-CeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 156 KNN-QISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 156 ~~~-~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
+++ +..|++..+.+.++++|+||+|+|+|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~GaGD~lag~ia 221 (272)
T TIGR00196 191 AAPDGDLWINKTGNAALAKGGTGDVLAGLIG 221 (272)
T ss_pred EcCCCeEEEECCCCCccCCCCchHHHHHHHH
Confidence 875 568899999999999999999999986
No 7
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.93 E-value=2.3e-25 Score=186.23 Aligned_cols=137 Identities=17% Similarity=0.199 Sum_probs=111.7
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcc----cccccCCCeEecCC
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPG----LIQDYRGPVYLTPN 119 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~----l~~~~~~~~iiTPh 119 (186)
..+|+.++.+++|+++||+|++.+ +..+.+..+++.+++. ++|+||||+++.....+.+ +++. ..++|||||
T Consensus 39 ~~~e~~~~~~~~~al~ik~G~l~~-~~~~~i~~~~~~~~~~--~~pvVlDPV~~~~s~~r~~~~~~Ll~~-~~~~vITpN 114 (249)
T TIGR00694 39 AEEEVAELAKIAGALVINIGTLDK-ESIEAMIAAGKSANEL--GVPVVLDPVGVGATKFRTETALELLSE-GRFAAIRGN 114 (249)
T ss_pred CHHHHHHHHHHcCceEEeCCCCCH-HHHHHHHHHHHHHHhc--CCCEEEcccccccchhHHHHHHHHHhh-cCCceeCCC
Confidence 457788888899999999999965 5666677777766666 8999999999987766543 3332 235999999
Q ss_pred HHHHhhhcCCC-------------h-HHHHH-HHHhCCCEEEEEeCCeeEEEcCCeEEEEcCCCCCCC-CCChhHHHHhh
Q psy9483 120 KREYENLLSGS-------------E-VNAAY-IKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRR-CGGQGDLVAGH 183 (186)
Q Consensus 120 ~~E~~rL~~~~-------------~-~~~a~-~a~~~~~~~vvlKG~~~~I~~~~~~~~~~~g~~~la-~~GsGDvLaGi 183 (186)
.+|+++|++.+ + .+.++ +++++ +++|++||.+|+|+++++.|.+.+|++.|+ ++||||+|||+
T Consensus 115 ~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~-~~~VllkG~~D~i~~~~~~~~~~~g~~~~~~~~GtGc~Lssa 193 (249)
T TIGR00694 115 AGEIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKY-GTVVVITGEVDYVSDGTSVYTIHNGTELLGKITGSGCLLGSV 193 (249)
T ss_pred HHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHh-CCEEEEECCCcEEEeCCEEEEECCCChHHhCCccchHHHHHH
Confidence 99999999841 1 12677 99999 599999999999999888888889999996 59999999999
Q ss_pred hc
Q psy9483 184 RD 185 (186)
Q Consensus 184 ia 185 (186)
||
T Consensus 194 Ia 195 (249)
T TIGR00694 194 VA 195 (249)
T ss_pred HH
Confidence 97
No 8
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.91 E-value=1.2e-23 Score=177.15 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=109.1
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcc----cccccCCCeEecCC
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPG----LIQDYRGPVYLTPN 119 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~----l~~~~~~~~iiTPh 119 (186)
..+|+.++.+++|+++||+|++++++ .+.+..+++.+++. ++|+||||+++.....+.+ +++. ..++|||||
T Consensus 44 ~~~e~~~~~~~~~alvi~~G~l~~~~-~~~i~~~~~~a~~~--~~pvVlDpv~~~~~~~~~~~~~~ll~~-~~~~vItPN 119 (263)
T PRK09355 44 APEEAEEMAKIAGALVINIGTLTEER-IEAMLAAGKIANEA--GKPVVLDPVGVGATSYRTEFALELLAE-VKPAVIRGN 119 (263)
T ss_pred CHHHHHHHHHhcCceEEeCCCCCHHH-HHHHHHHHHHHHhc--CCCEEECCcccCcchhhHHHHHHHHHh-cCCcEecCC
Confidence 34677788889999999999996654 44454555555566 8999999999987766543 2322 346999999
Q ss_pred HHHHhhhcCCC-------------hH-HHHH-HHHhCCCEEEEEeCCeeEEEcCCeEEEEcCCCCCCC-CCChhHHHHhh
Q psy9483 120 KREYENLLSGS-------------EV-NAAY-IKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRR-CGGQGDLVAGH 183 (186)
Q Consensus 120 ~~E~~rL~~~~-------------~~-~~a~-~a~~~~~~~vvlKG~~~~I~~~~~~~~~~~g~~~la-~~GsGDvLaGi 183 (186)
.+|+++|++.+ +. +.++ +++++ +++|++||.+|+|+++++.|.+.+|++.++ ++||||+|+|+
T Consensus 120 ~~E~~~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~-~~~VvvkG~~d~I~~~~~~~~~~~g~~~~~~v~GtGc~L~~~ 198 (263)
T PRK09355 120 ASEIAALAGEAAETKGVDSTDGSADAVEIAKAAAKKY-GTVVVVTGEVDYITDGERVVSVHNGHPLMTKVTGTGCLLSAV 198 (263)
T ss_pred HHHHHHHhCCCcccCCcCCCCCHHHHHHHHHHHHHHh-CCEEEEECCCcEEEeCCEEEEEeCCCcccCCcccccHHHHHH
Confidence 99999999851 11 2677 99999 599999999999999888888888999996 59999999999
Q ss_pred hc
Q psy9483 184 RD 185 (186)
Q Consensus 184 ia 185 (186)
||
T Consensus 199 ia 200 (263)
T PRK09355 199 VA 200 (263)
T ss_pred HH
Confidence 87
No 9
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=99.89 E-value=4.8e-23 Score=171.15 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=120.0
Q ss_pred chHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCc----ccccccCCCeEecC
Q psy9483 43 DSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHP----GLIQDYRGPVYLTP 118 (186)
Q Consensus 43 ~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~----~l~~~~~~~~iiTP 118 (186)
+..+|+.++.+.+|+++||.|+.+. +.++.+....+.+++. ++|+||||+|....+.|. ++++. .++++|++
T Consensus 44 ~~~eE~~e~~kia~AL~INIGTL~~-~~~~~m~~A~~~An~~--~~PvvLDPVgvgAt~~R~~~~~~LL~~-~~~~~IrG 119 (265)
T COG2145 44 DAPEEVEEFAKIADALLINIGTLSA-ERIQAMRAAIKAANES--GKPVVLDPVGVGATKFRTKFALELLAE-VKPAAIRG 119 (265)
T ss_pred cCHHHHHHHHHhccceEEeeccCCh-HHHHHHHHHHHHHHhc--CCCEEecCccCCchHHHHHHHHHHHHh-cCCcEEec
Confidence 3467889999999999999999865 4667788888888888 999999999999988886 45543 35899999
Q ss_pred CHHHHhhhcCC-------C-------hHHHHH-HHHhCCCEEEEEeCCeeEEEcCCeEEEEcCCCCCC-CCCChhHHHHh
Q psy9483 119 NKREYENLLSG-------S-------EVNAAY-IKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWR-RCGGQGDLVAG 182 (186)
Q Consensus 119 h~~E~~rL~~~-------~-------~~~~a~-~a~~~~~~~vvlKG~~~~I~~~~~~~~~~~g~~~l-a~~GsGDvLaG 182 (186)
|.+|+..|.+. | .++.++ +|++| +++|+++|+.|+|+++++.++..+|+|+| .+.||||+|++
T Consensus 120 N~sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~-~~vvvvTG~vD~Isdg~~~~~i~nG~pll~~ItGtGCllga 198 (265)
T COG2145 120 NASEIAALAGEAGGGKGVDAGDGAADAIEAAKKAAQKY-GTVVVVTGEVDYISDGTRVVVIHNGSPLLGKITGTGCLLGA 198 (265)
T ss_pred cHHHHHHHhcccccccccccccchhhHHHHHHHHHHHh-CcEEEEECCeeEEEcCCeEEEEECCCcHHhhhhccccHHHH
Confidence 99999999986 2 123677 99999 59999999999999999999999999999 59999999999
Q ss_pred hhcC
Q psy9483 183 HRDI 186 (186)
Q Consensus 183 iia~ 186 (186)
++|+
T Consensus 199 v~aa 202 (265)
T COG2145 199 VVAA 202 (265)
T ss_pred HHHH
Confidence 9873
No 10
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=99.88 E-value=7.9e-23 Score=170.43 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=111.7
Q ss_pred HHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCc----ccccccCCCeEecCCHH
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHP----GLIQDYRGPVYLTPNKR 121 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~----~l~~~~~~~~iiTPh~~ 121 (186)
+|+.++.+.+++++||.|+.++ +..+.+....+.+++. ++||||||+|......|. ++++.. +|+||++|.+
T Consensus 41 ~E~~e~~~~a~al~iNiGTl~~-~~~~~m~~A~~~A~~~--~~PvVLDPVgvGas~~R~~~~~~LL~~~-~~~vIrGN~s 116 (246)
T PF02110_consen 41 EEVEEFASIADALVINIGTLTD-ERIEAMKKAAKAANEL--GIPVVLDPVGVGASKFRTEFALELLNNY-KPTVIRGNAS 116 (246)
T ss_dssp TTHHHHHHCTSEEEEESTTSSH-HHHHHHHHHHHHHHHT--T--EEEE-TTBTTBHHHHHHHHHHHCHS---SEEEEEHH
T ss_pred HHHHHHHHHcCEEEEECCCCCH-hHHHHHHHHHHHHHHc--CCCEEEeCcccCCcHHHHHHHHHHHHhC-CCcEEEeCHH
Confidence 5677788899999999998754 5667777888888888 999999999999887775 355443 5799999999
Q ss_pred HHhhhcCC-------C-----h--HHHHH-HHHhCCCEEEEEeCCeeEEEcCCeEEEEcCCCCCC-CCCChhHHHHhhhc
Q psy9483 122 EYENLLSG-------S-----E--VNAAY-IKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWR-RCGGQGDLVAGHRD 185 (186)
Q Consensus 122 E~~rL~~~-------~-----~--~~~a~-~a~~~~~~~vvlKG~~~~I~~~~~~~~~~~g~~~l-a~~GsGDvLaGiia 185 (186)
|++.|.+. | . .+.++ +|++| +|+|+++|+.|+|+++++.+...+|++.| .+.||||+|+++||
T Consensus 117 EI~aLag~~~~~kGVDs~~~~~~~~~~a~~lA~k~-~~vVvvTG~~D~Isdg~~~~~i~nG~~~l~~itGtGC~lgalia 195 (246)
T PF02110_consen 117 EIAALAGEDSKAKGVDSGDSDEDAIEAAKQLAQKY-NCVVVVTGEVDYISDGNRVYRIPNGSPLLSKITGTGCMLGALIA 195 (246)
T ss_dssp HHHHHHTCCCCSCSSSSSCGSHHHHHHHHHHHHHT-TSEEEEESSSEEEEESSCEEEECSSSGGGGGSTTHHHHHHHHHH
T ss_pred HHHHHhCcCCCCCCcCcCCcchHHHHHHHHHHHhc-CCEEEEecCCcEEECCCeEEEeCCCChHhcceeccchHHHHHHH
Confidence 99999997 1 1 23678 99999 69999999999999999999999999999 59999999999987
No 11
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.84 E-value=2.1e-20 Score=155.79 Aligned_cols=136 Identities=18% Similarity=0.201 Sum_probs=105.0
Q ss_pred HHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcc----cccccCCCeEecCCH
Q psy9483 45 VDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPG----LIQDYRGPVYLTPNK 120 (186)
Q Consensus 45 ~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~----l~~~~~~~~iiTPh~ 120 (186)
.+++.+.++++|+++||+|+++++ ..+.+..+++.+++. ++|+|+||+++.....+.+ ++.. ...+|||||.
T Consensus 40 ~e~~~~~l~~~d~vvi~~G~l~~~-~~~~i~~~~~~~~~~--~~pvVlDp~~~~~~~~~~~~~~~ll~~-~~~~ilTPN~ 115 (242)
T cd01170 40 PEEVEELAKIAGALVINIGTLTSE-QIEAMLKAGKAANQL--GKPVVLDPVGVGATSFRTEVAKELLAE-GQPTVIRGNA 115 (242)
T ss_pred HHHHHHHHHHcCcEEEeCCCCChH-HHHHHHHHHHHHHhc--CCCEEEcccccCcchhHHHHHHHHHhc-CCCeEEcCCH
Confidence 456677788999999999999654 445555555555556 8999999999876554422 2221 1369999999
Q ss_pred HHHhhhcCC--C----------hH---HHHH-HHHhCCCEEEEEeCCeeEEEcCCeEEEEcCCCCCCC-CCChhHHHHhh
Q psy9483 121 REYENLLSG--S----------EV---NAAY-IKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRR-CGGQGDLVAGH 183 (186)
Q Consensus 121 ~E~~rL~~~--~----------~~---~~a~-~a~~~~~~~vvlKG~~~~I~~~~~~~~~~~g~~~la-~~GsGDvLaGi 183 (186)
.|+++|++. . +. +.++ +++++ ++.|++||.+|+++++++.+.+..+++.++ ++|+||+|+|+
T Consensus 116 ~Ea~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~-~~~VllkG~~d~l~~~~~~~~~~~~~~~~~~v~GtGdtLa~a 194 (242)
T cd01170 116 SEIAALAGLTGLGKGVDSSSSDEEDALELAKALARKY-GAVVVVTGEVDYITDGERVVVVKNGHPLLTKITGTGCLLGAV 194 (242)
T ss_pred HHHHHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHh-CCEEEEECCCcEEEECCEEEEEeCCCccccCCCchHHHHHHH
Confidence 999999986 1 11 2567 88889 599999999999998888888888888886 59999999999
Q ss_pred hc
Q psy9483 184 RD 185 (186)
Q Consensus 184 ia 185 (186)
||
T Consensus 195 iA 196 (242)
T cd01170 195 IA 196 (242)
T ss_pred HH
Confidence 87
No 12
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.58 E-value=1.1e-14 Score=122.41 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=105.7
Q ss_pred hcccceeEEEecCCchhh--hhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhc
Q psy9483 7 CATVTLSIYVCSEGAVPI--LKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAA 84 (186)
Q Consensus 7 r~GaGlv~v~~~~~~~~~--~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~ 84 (186)
-.|+..+|.+|.|+.... +....||.+-.. ++.+.+.+ .++++.+|+ |+ +.++.+.+.+.++. +
T Consensus 32 vyg~saITaltaQNt~gV~~v~~v~~~~v~~Q--------l~av~~D~-~v~avKtGM-L~-~~eiie~va~~l~~---~ 97 (263)
T COG0351 32 VYGMSAITALTAQNTLGVHGVHPVPPEFVEAQ--------LDAVFSDI-PVDAVKTGM-LG-SAEIIEVVAEKLKK---Y 97 (263)
T ss_pred CccceEEEEEEEeecCceeeEEeCCHHHHHHH--------HHHHhhcC-CCCEEEECC-cC-CHHHHHHHHHHHHh---c
Confidence 368889999999988762 223333332111 23333333 478888887 66 56677888777765 3
Q ss_pred CCC-CCEEEecccc-----cccccCc-cccc--ccCCCeEecCCHHHHhhhcCC---C---hHH-HHHHHHhCCCEEEEE
Q psy9483 85 NLN-VPLVIDADGL-----KLVAEHP-GLIQ--DYRGPVYLTPNKREYENLLSG---S---EVN-AAYIKQGHPNLTVIV 148 (186)
Q Consensus 85 ~~~-~p~VlDadal-----~~l~~~~-~l~~--~~~~~~iiTPh~~E~~rL~~~---~---~~~-~a~~a~~~~~~~vvl 148 (186)
+ .|+|+||+=+ .++..+. +.++ .+|..+|+|||..|.+.|+|. + +.. ++++..+++-..|++
T Consensus 98 --~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~~~i~~~g~~~Vli 175 (263)
T COG0351 98 --GIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAAKLLHELGAKAVLI 175 (263)
T ss_pred --CCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHHHHHHHhCCCEEEE
Confidence 5 6799999433 3333321 2221 246679999999999999994 2 222 444443333589999
Q ss_pred eC------CeeEEEcCCeEEE-EcCCCCCCCCCChhHHHHhhhc
Q psy9483 149 KG------HEDVIKNNQISLT-CKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 149 KG------~~~~I~~~~~~~~-~~~g~~~la~~GsGDvLaGiia 185 (186)
|| ..|++++++.++. ....-+.-.++||||+||..|+
T Consensus 176 KGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIa 219 (263)
T COG0351 176 KGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIA 219 (263)
T ss_pred cCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHH
Confidence 99 4578888775443 3445556679999999999886
No 13
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.40 E-value=2.1e-12 Score=111.79 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=101.6
Q ss_pred chhhcccceeEEEecCCchhhhh--hcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHH
Q psy9483 4 ILQCATVTLSIYVCSEGAVPILK--NYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKL 81 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~~~~~--~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~ 81 (186)
+.-..|+..+|.+|.|+...+.. ...||.+... ++.+.+.+ .++++.||+ |+ +.++.+.+.+.++..
T Consensus 30 alGv~g~sviTalTaQnt~~V~~v~~v~~~~i~~Q--------l~all~D~-~i~aIKiGm-L~-s~e~i~~v~~~l~~~ 98 (321)
T PTZ00493 30 GLGCHCCTALVVLTAQNTKEVKRIVEIEEKFIVEQ--------LDSIFADV-TIDVVKLGV-LY-SKKIISLVHNYITNM 98 (321)
T ss_pred HcCCccceEEEEEEEEcCCceEEEEECCHHHHHHH--------HHHHHhCC-CCCEEEECC-cC-CHHHHHHHHHHHHHh
Confidence 34457889999999999876432 3333332111 22333322 378899988 76 566778788877654
Q ss_pred HhcC-CCCCEEEecccc-----ccccc-Cc-ccc-c-ccCCCeEecCCHHHHhhhcC-----C--C--hH-HHHH-HHHh
Q psy9483 82 KAAN-LNVPLVIDADGL-----KLVAE-HP-GLI-Q-DYRGPVYLTPNKREYENLLS-----G--S--EV-NAAY-IKQG 140 (186)
Q Consensus 82 ~~~~-~~~p~VlDadal-----~~l~~-~~-~l~-~-~~~~~~iiTPh~~E~~rL~~-----~--~--~~-~~a~-~a~~ 140 (186)
..+. .+.|+|+||.-. .++.. .. +.+ + .++..+|||||..|++.|++ . + ++ ++++ +.++
T Consensus 99 ~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~ 178 (321)
T PTZ00493 99 NKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALDCQMDLSKANMTELCKLVTEK 178 (321)
T ss_pred cccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCcccCCCCHHHHHHHHHHHHHh
Confidence 1110 022599999533 33331 10 111 1 24667999999999999998 2 1 22 2666 7766
Q ss_pred CCCEEEEEeCCe--------------eEEEc-C--------------C------e-EEEEcCCCCCCCCCChhHHHHhhh
Q psy9483 141 HPNLTVIVKGHE--------------DVIKN-N--------------Q------I-SLTCKEGNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 141 ~~~~~vvlKG~~--------------~~I~~-~--------------~------~-~~~~~~g~~~la~~GsGDvLaGii 184 (186)
++-..|++||.| |++++ + + . +++....-+...++||||+||..|
T Consensus 179 ~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~hGTGc~fASAI 258 (321)
T PTZ00493 179 LNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVYKLRSKRKPGKDIHGTGCTLSTAI 258 (321)
T ss_pred cCCCEEEECcCCCcccccccccccceeEEecCCccccccccccccccccccccceEEEEEecccCCCCCCChHHHHHHHH
Confidence 543579999965 34432 1 1 1 223323334445899999999988
Q ss_pred c
Q psy9483 185 D 185 (186)
Q Consensus 185 a 185 (186)
+
T Consensus 259 A 259 (321)
T PTZ00493 259 A 259 (321)
T ss_pred H
Confidence 6
No 14
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.33 E-value=6.5e-12 Score=105.07 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=96.5
Q ss_pred cccceeEEEecCCchhhh--hhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcC
Q psy9483 8 ATVTLSIYVCSEGAVPIL--KNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAAN 85 (186)
Q Consensus 8 ~GaGlv~v~~~~~~~~~~--~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~ 85 (186)
.|++++|+++.++..... ....||.+. +.++.+.+.. .++++.+|+ ++ +.++.+.+.+.++. .
T Consensus 34 ~~~~v~Ta~~~q~~~~~~~~~~~~~~~~~--------~q~~~~~~~~-~~~ai~iG~-l~-~~~~~~~i~~~~~~---~- 98 (266)
T PRK06427 34 YGMSAITALTAQNTLGVQRVHPIPPEFVA--------AQLDAVFSDI-RIDAVKIGM-LA-SAEIIETVAEALKR---Y- 98 (266)
T ss_pred EEeeeeeEEEeecCCCeeEEEeCCHHHHH--------HHHHHHHhcC-CCCEEEECC-cC-CHHHHHHHHHHHHh---C-
Confidence 578899999887653321 111222211 1122232222 589999999 66 45565555555543 3
Q ss_pred CC-CCEEEeccccc-----ccccC--ccccc-ccCCCeEecCCHHHHhhhcCC---C--h-H-HHHH-HHHhCCCEEEEE
Q psy9483 86 LN-VPLVIDADGLK-----LVAEH--PGLIQ-DYRGPVYLTPNKREYENLLSG---S--E-V-NAAY-IKQGHPNLTVIV 148 (186)
Q Consensus 86 ~~-~p~VlDadal~-----~l~~~--~~l~~-~~~~~~iiTPh~~E~~rL~~~---~--~-~-~~a~-~a~~~~~~~vvl 148 (186)
+ .|+|+||.-.. +.... ..+.+ ..+...+||||..|+++|++. + + . +.++ +.+.. ...||+
T Consensus 99 -~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~~a~~l~~~g-~~~Vvi 176 (266)
T PRK06427 99 -PIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPIADTEDEMKAAARALHALG-CKAVLI 176 (266)
T ss_pred -CCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhcC-CCEEEE
Confidence 4 48999995321 11100 01111 134568999999999999996 1 1 2 3556 66555 368999
Q ss_pred eCCe--------eEEEcCCeEEEEcCC-CCCCCCCChhHHHHhhhc
Q psy9483 149 KGHE--------DVIKNNQISLTCKEG-NSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 149 KG~~--------~~I~~~~~~~~~~~g-~~~la~~GsGDvLaGiia 185 (186)
||.+ ++++++++.+..... .+...+.|+||+|++.++
T Consensus 177 t~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~ 222 (266)
T PRK06427 177 KGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIA 222 (266)
T ss_pred cCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHH
Confidence 9987 366665554444332 234478999999999875
No 15
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.32 E-value=1.5e-11 Score=102.57 Aligned_cols=161 Identities=18% Similarity=0.207 Sum_probs=97.5
Q ss_pred hhcccceeEEEecCCchhhhh--hcCCceEEecccCCCcchHHHHHHhccc--CcEEEEccCCCCCHHHHHHHHHHHHHH
Q psy9483 6 QCATVTLSIYVCSEGAVPILK--NYSPELIVLPHYLDRNDSVDHIMYWMNR--MHSVLIGPGLGTEPLVQSNVISIIHKL 81 (186)
Q Consensus 6 ~r~GaGlv~v~~~~~~~~~~~--~~~Pe~~v~~~~~~~~~~~~~~~~~~~~--~~aivIGpGlg~~~~~~~~~~~~l~~~ 81 (186)
-..|+..+|.+|.|+...+.. ...||.+ .+++...++. ++++.||+ + .+.++.+.+.+.++
T Consensus 26 g~~~~~v~T~~t~q~~~~v~~~~~~~~~~~-----------~~q~~~~~~d~~~~aikiG~-l-~~~~~~~~i~~~~~-- 90 (254)
T TIGR00097 26 GVFGTSVITALTAQNTRGVTGVYPIPPDFV-----------EAQLDAVFSDIPVDAAKTGM-L-ASAEIVEAVARKLR-- 90 (254)
T ss_pred CCeecceeEEEEeEcCcceEEEEECCHHHH-----------HHHHHHHHhCCCCCEEEECC-c-CCHHHHHHHHHHHH--
Confidence 356889999999998766432 2222222 2334444443 67777766 3 45555555555554
Q ss_pred HhcCCCC-CEEEecccc-----cccccCc--cccc-ccCCCeEecCCHHHHhhhcCC--C---hH-HHHH-HHHhCCCEE
Q psy9483 82 KAANLNV-PLVIDADGL-----KLVAEHP--GLIQ-DYRGPVYLTPNKREYENLLSG--S---EV-NAAY-IKQGHPNLT 145 (186)
Q Consensus 82 ~~~~~~~-p~VlDadal-----~~l~~~~--~l~~-~~~~~~iiTPh~~E~~rL~~~--~---~~-~~a~-~a~~~~~~~ 145 (186)
+. +. |+|+||.-. .+...+. .+.+ ..+...+||||..|+++|++. + +. +.++ +.+.. ...
T Consensus 91 -~~--~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~a~~l~~~g-~~~ 166 (254)
T TIGR00097 91 -EY--PVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKIRTEQDMIKAAKKLRELG-PKA 166 (254)
T ss_pred -hc--CCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CCE
Confidence 34 56 799998632 2222110 1111 225568999999999999996 1 22 2556 66544 367
Q ss_pred EEEeCCe-------eEEEcCCeEEEEcC-CCCCCCCCChhHHHHhhhc
Q psy9483 146 VIVKGHE-------DVIKNNQISLTCKE-GNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 146 vvlKG~~-------~~I~~~~~~~~~~~-g~~~la~~GsGDvLaGiia 185 (186)
|++||.+ ++++++++.+.... .-+...++|+||+|++.++
T Consensus 167 Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aala 214 (254)
T TIGR00097 167 VLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIA 214 (254)
T ss_pred EEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHH
Confidence 8999875 56676665543332 2223348999999999875
No 16
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.27 E-value=2.9e-12 Score=106.81 Aligned_cols=162 Identities=18% Similarity=0.193 Sum_probs=90.9
Q ss_pred hcccceeEEEecCCchhhhh--hcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhc
Q psy9483 7 CATVTLSIYVCSEGAVPILK--NYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAA 84 (186)
Q Consensus 7 r~GaGlv~v~~~~~~~~~~~--~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~ 84 (186)
..++.++|.++.++...... ...+|.+. +.++.+.+. -.+|++.+|. +++ .+..+.+.++++. .
T Consensus 20 ~~~~~v~Talt~qn~~~~~~~~~~~~~~~~--------~ql~~~~~~-~~~~aikiG~-l~~-~~~v~~i~~~l~~---~ 85 (246)
T PF08543_consen 20 VHGCPVPTALTSQNTYGVFDIEPVDSEMIK--------AQLDALLED-MKFDAIKIGY-LGS-AEQVEIIADFLKK---P 85 (246)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEE--HHHHH--------HHHHHHHHT-SC-SEEEE-S--SS-HHHHHHHHHHHHH---T
T ss_pred CccceEeEEEEecCCcceEEEEECCHHHHH--------HHHHHhccc-ccccEEEEcc-cCC-chhhhhHHHHHhc---c
Confidence 34667777777776443221 11111110 112333332 2699999999 774 5567777777754 3
Q ss_pred CCCCCEEEecccc-----cccccCc-cccc--ccCCCeEecCCHHHHhhhcCC--C---hH-HHHH-HHHhCCCEEEEEe
Q psy9483 85 NLNVPLVIDADGL-----KLVAEHP-GLIQ--DYRGPVYLTPNKREYENLLSG--S---EV-NAAY-IKQGHPNLTVIVK 149 (186)
Q Consensus 85 ~~~~p~VlDadal-----~~l~~~~-~l~~--~~~~~~iiTPh~~E~~rL~~~--~---~~-~~a~-~a~~~~~~~vvlK 149 (186)
+.++|+||.=. .....+. +.++ ..+...|||||.-|++.|++. . ++ ++++ +.+.. -..|++|
T Consensus 86 --~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~~~~~~~~~~~~l~~~G-~~~VvIt 162 (246)
T PF08543_consen 86 --KIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREINSEEDIEEAAKALLALG-PKNVVIT 162 (246)
T ss_dssp --TTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--SSHHHHHHHHHHHHHTS--SEEEEE
T ss_pred --CCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCCChHhHHHHHHHHHHhC-CceEEEe
Confidence 67999999332 1111110 1111 124558999999999999996 2 22 2667 77755 3688999
Q ss_pred CCe---------eEEEcCCeEEEEcC-CCCCCCCCChhHHHHhhhc
Q psy9483 150 GHE---------DVIKNNQISLTCKE-GNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 150 G~~---------~~I~~~~~~~~~~~-g~~~la~~GsGDvLaGiia 185 (186)
|.+ ++.+++++.+.... ..+.-..+||||+||++++
T Consensus 163 g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~la 208 (246)
T PF08543_consen 163 GGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALA 208 (246)
T ss_dssp EEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHH
T ss_pred eeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHH
Confidence 987 34455565443332 2333679999999999886
No 17
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.23 E-value=1.2e-10 Score=95.72 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=97.0
Q ss_pred ccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcc--cCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCC
Q psy9483 9 TVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMN--RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANL 86 (186)
Q Consensus 9 GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~--~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~ 86 (186)
+++++|.++.++...... +.+++. +...+++....+ +++++.+|. ..+.++.+.+.++++.. .
T Consensus 30 ~~~~~T~~~~~~~~~~~~-------~~~~~~--~~~~~~l~~~~~~~~~~~i~~G~--l~~~~~~~~i~~~~~~~--~-- 94 (242)
T cd01169 30 GMSVITALTAQNTLGVFG-------VHPVPP--EFVAAQLDAVLEDIPVDAIKIGM--LGSAEIIEAVAEALKDY--P-- 94 (242)
T ss_pred ecceeEEEEeEcCcceeE-------EEECCH--HHHHHHHHHHHhCCCCCEEEECC--CCCHHHHHHHHHHHHhC--C--
Confidence 688899998887542211 112200 011123333333 578888876 34666767676666542 2
Q ss_pred CCCEEEeccccccccc---Ccc----cccc-cCCCeEecCCHHHHhhhcCC---Ch--H-HHHH-HHHhCCCEEEEEeCC
Q psy9483 87 NVPLVIDADGLKLVAE---HPG----LIQD-YRGPVYLTPNKREYENLLSG---SE--V-NAAY-IKQGHPNLTVIVKGH 151 (186)
Q Consensus 87 ~~p~VlDadal~~l~~---~~~----l~~~-~~~~~iiTPh~~E~~rL~~~---~~--~-~~a~-~a~~~~~~~vvlKG~ 151 (186)
+.|+|+||.-...... +++ +.+. .+...+||||..|+++|++. +. . +.++ +.++. ...|++||.
T Consensus 95 ~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~~~~~~~~~~~~l~~~g-~~~Vvit~g 173 (242)
T cd01169 95 DIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLEIATEEDMMKAAKALLALG-AKAVLIKGG 173 (242)
T ss_pred CCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CCEEEEecC
Confidence 5789999964321100 111 1111 25679999999999999997 21 2 2555 76666 478999987
Q ss_pred e-------eEEEcCCeEE-EEcCCCCCCCCCChhHHHHhhhc
Q psy9483 152 E-------DVIKNNQISL-TCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 152 ~-------~~I~~~~~~~-~~~~g~~~la~~GsGDvLaGiia 185 (186)
. ++++++++.+ +.....+...+.|+||+|+|.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~ 215 (242)
T cd01169 174 HLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIA 215 (242)
T ss_pred CCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHH
Confidence 5 3566655443 33333445679999999999875
No 18
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.16 E-value=1.4e-10 Score=97.84 Aligned_cols=164 Identities=16% Similarity=0.063 Sum_probs=96.8
Q ss_pred hhcccceeEEEecCCchhhh----hhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHH
Q psy9483 6 QCATVTLSIYVCSEGAVPIL----KNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKL 81 (186)
Q Consensus 6 ~r~GaGlv~v~~~~~~~~~~----~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~ 81 (186)
-..|+..+|.+|+|+....+ ....||.+-.. ++.+.+.+ .+|++.+|+ +++ .+..+.+.+.++..
T Consensus 31 g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~q--------l~~l~~d~-~~~aikiG~-l~s-~~~i~~i~~~l~~~ 99 (270)
T PRK12616 31 NVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRAQ--------LSTIVDGI-GVDAMKTGM-LPT-VDIIELAADTIKEK 99 (270)
T ss_pred CCcccceeeEEeeEeCCCcceeEEEECCHHHHHHH--------HHHHHcCC-CCCEEEECC-CCC-HHHHHHHHHHHHhc
Confidence 34688899999999876431 22222332111 23333333 489999999 774 44556666666542
Q ss_pred HhcCCCCCEEEeccccc-----ccccC-cc-ccc-ccCCCeEecCCHHHHhhhcCC---C---hH-HHHH-HHHhCCCEE
Q psy9483 82 KAANLNVPLVIDADGLK-----LVAEH-PG-LIQ-DYRGPVYLTPNKREYENLLSG---S---EV-NAAY-IKQGHPNLT 145 (186)
Q Consensus 82 ~~~~~~~p~VlDadal~-----~l~~~-~~-l~~-~~~~~~iiTPh~~E~~rL~~~---~---~~-~~a~-~a~~~~~~~ 145 (186)
. .+|+|+||.-.. ++..+ .+ +.+ ..+...++|||..|++.|++. + +. +.++ +.+.. -..
T Consensus 100 --~--~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~~G-~~~ 174 (270)
T PRK12616 100 --Q--LKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEIKTVEQMKEAAKKIHELG-AQY 174 (270)
T ss_pred --C--CCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-CCE
Confidence 1 257999997432 11110 01 111 124568999999999999984 1 12 2555 65544 357
Q ss_pred EEEeCCe--------eEEEcCCeEEEEcCC-CCCCCCCChhHHHHhhhc
Q psy9483 146 VIVKGHE--------DVIKNNQISLTCKEG-NSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 146 vvlKG~~--------~~I~~~~~~~~~~~g-~~~la~~GsGDvLaGiia 185 (186)
||+||.+ +++++++..+..... .+...++|+||+|++.++
T Consensus 175 VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaala 223 (270)
T PRK12616 175 VVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVT 223 (270)
T ss_pred EEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHH
Confidence 8998853 356666654433322 222347999999999875
No 19
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.13 E-value=2.7e-10 Score=103.94 Aligned_cols=124 Identities=22% Similarity=0.213 Sum_probs=75.6
Q ss_pred cCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCC-CEEEecccc-----cccccCc-ccc--cccCCCeEecCCHHHHh
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNV-PLVIDADGL-----KLVAEHP-GLI--QDYRGPVYLTPNKREYE 124 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~-p~VlDadal-----~~l~~~~-~l~--~~~~~~~iiTPh~~E~~ 124 (186)
.++++.+|+ ++ +.++.+.+.+.++. . +. |+|+||.-. .++..+. +.+ ...+.+.+||||..|++
T Consensus 78 ~~~aik~G~-l~-~~~~i~~i~~~l~~---~--~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~ 150 (502)
T PLN02898 78 PVDVVKTGM-LP-SAEIVKVLCQALKE---F--PVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEAS 150 (502)
T ss_pred CCCEEEECC-cC-CHHHHHHHHHHHHh---C--CCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHH
Confidence 367777777 44 46566656555543 3 44 599999522 1111110 111 12345799999999999
Q ss_pred hhcCC---C---hH-HHHH-HHHhCCCEEEEEeCCe--------eEEEcCCeEEEEc-CCCCCCCCCChhHHHHhhhc
Q psy9483 125 NLLSG---S---EV-NAAY-IKQGHPNLTVIVKGHE--------DVIKNNQISLTCK-EGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 125 rL~~~---~---~~-~~a~-~a~~~~~~~vvlKG~~--------~~I~~~~~~~~~~-~g~~~la~~GsGDvLaGiia 185 (186)
+|++. + +. +.++ +.+.. ...|++||.+ +++++++..+... ...+...++|+||+|++.++
T Consensus 151 ~L~g~~~~~~~~~~~~~a~~l~~~G-~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaia 227 (502)
T PLN02898 151 ALLGGDPLETVADMRSAAKELHKLG-PRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIA 227 (502)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHhcC-CCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHH
Confidence 99984 1 22 2556 66544 3689999875 4666655544332 22333468999999999875
No 20
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.13 E-value=1.6e-10 Score=106.22 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=98.9
Q ss_pred hcccceeEEEecCCchhhhh--hcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhc
Q psy9483 7 CATVTLSIYVCSEGAVPILK--NYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAA 84 (186)
Q Consensus 7 r~GaGlv~v~~~~~~~~~~~--~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~ 84 (186)
..|+.++|.+|.++...... ...||.+. +.++.+.+.+ .++++.+|+ ++ +.++.+.+.++++.. .
T Consensus 58 ~~~~~v~Talt~q~t~~v~~v~~~~~~~i~--------~ql~~l~~d~-~~~aikiG~-l~-s~~~i~~v~~~l~~~--~ 124 (530)
T PRK14713 58 GYGMAVITALVAQNTRGVRAVHVPPADFLR--------AQLDAVSDDV-TVDAVKIGM-LG-DAEVIDAVRTWLAEH--R 124 (530)
T ss_pred CeecchhheEeeecCcceeeeccCCHHHHH--------HHHHHHHhCC-CCCEEEECC-cC-CHHHHHHHHHHHHhC--C
Confidence 35788888888888754321 22222221 1123333322 489999987 66 456777777777643 1
Q ss_pred CCCCCEEEecccc-----cccccC-cccc-cccCCCeEecCCHHHHhhhcCCC---h---H-HHHH-HHHhCCCEEEEEe
Q psy9483 85 NLNVPLVIDADGL-----KLVAEH-PGLI-QDYRGPVYLTPNKREYENLLSGS---E---V-NAAY-IKQGHPNLTVIVK 149 (186)
Q Consensus 85 ~~~~p~VlDadal-----~~l~~~-~~l~-~~~~~~~iiTPh~~E~~rL~~~~---~---~-~~a~-~a~~~~~~~vvlK 149 (186)
..++|+||.-. .++..+ .+.+ +..+.+.|||||..|++.|+|.+ . . +.++ ++++.+ +.||+|
T Consensus 125 --~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~~~~~~~d~~~aa~~L~~~~g-~~VvIt 201 (530)
T PRK14713 125 --PPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELAVLLGEPPATTWEEALAQARRLAAETG-TTVLVK 201 (530)
T ss_pred --CCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHHHHhCCCCCCCHHHHHHHHHHHHHhcC-CEEEEe
Confidence 34699999653 222111 0111 12456799999999999999851 1 2 2556 777774 789999
Q ss_pred CCe-------eEEEcC-CeEEEEc-CCCCCCCCCChhHHHHhhhc
Q psy9483 150 GHE-------DVIKNN-QISLTCK-EGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 150 G~~-------~~I~~~-~~~~~~~-~g~~~la~~GsGDvLaGiia 185 (186)
|.+ ++++.+ ++.+... ...+...++|+||+|+|.++
T Consensus 202 gG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaala 246 (530)
T PRK14713 202 GGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALA 246 (530)
T ss_pred CCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHH
Confidence 874 455543 3343333 22334568999999999875
No 21
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.13 E-value=2.8e-10 Score=108.49 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=99.6
Q ss_pred hcccceeEEEecCCchhhhh--hcCCceEEecccCCCcchHHHHHHhcc--cCcEEEEccCCCCCHHHHHHHHHHHHHHH
Q psy9483 7 CATVTLSIYVCSEGAVPILK--NYSPELIVLPHYLDRNDSVDHIMYWMN--RMHSVLIGPGLGTEPLVQSNVISIIHKLK 82 (186)
Q Consensus 7 r~GaGlv~v~~~~~~~~~~~--~~~Pe~~v~~~~~~~~~~~~~~~~~~~--~~~aivIGpGlg~~~~~~~~~~~~l~~~~ 82 (186)
..|+..+|.+|.|+...+.. ...||.+. +++...++ .++++.||+ +++ .++.+.+.+.++..
T Consensus 270 ~~~~~viTaltaQn~~~v~~v~~~~~~~v~-----------~Ql~~~~~d~~~~aiKiGm-L~s-~e~v~~i~~~l~~~- 335 (755)
T PRK09517 270 GYGMCVVTALVAQNTHGVNTIHTPPLTFLE-----------EQLEAVFSDVTVDAVKLGM-LGS-ADTVDLVASWLGSH- 335 (755)
T ss_pred CcccchheeEeeEcccceeEEeeCCHHHHH-----------HHHHHHHcCCCCCEEEECC-CCC-HHHHHHHHHHHHhC-
Confidence 45788999999998765422 22333321 23333333 489999999 875 45555565655432
Q ss_pred hcCCCCCEEEecccc-----cccccC-cc-cccccCCCeEecCCHHHHhhhcCC---C---hH-HHHH-HHHhCCCEEEE
Q psy9483 83 AANLNVPLVIDADGL-----KLVAEH-PG-LIQDYRGPVYLTPNKREYENLLSG---S---EV-NAAY-IKQGHPNLTVI 147 (186)
Q Consensus 83 ~~~~~~p~VlDadal-----~~l~~~-~~-l~~~~~~~~iiTPh~~E~~rL~~~---~---~~-~~a~-~a~~~~~~~vv 147 (186)
. ..|+|+||.-. .++..+ .+ +.+..+.++|||||..|+++|+|. . +. +.++ +.++.+ +.||
T Consensus 336 -~--~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~~~~~~~d~~~aa~~L~~~~g-~~VV 411 (755)
T PRK09517 336 -E--HGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEAPAITMDEAIAQARGFARTHG-TIVI 411 (755)
T ss_pred -C--CCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcC-CEEE
Confidence 2 46799998633 222111 01 112245679999999999999994 1 12 2566 777774 7899
Q ss_pred EeCCe-------eEEEc-CCeEEEEcC-CCCCCCCCChhHHHHhhhc
Q psy9483 148 VKGHE-------DVIKN-NQISLTCKE-GNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 148 lKG~~-------~~I~~-~~~~~~~~~-g~~~la~~GsGDvLaGiia 185 (186)
+||.+ +.++. ++..+.... .-+.-.++|+||+|++.++
T Consensus 412 VkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaia 458 (755)
T PRK09517 412 VKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALA 458 (755)
T ss_pred EcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHH
Confidence 99984 45554 443433332 2223358999999999875
No 22
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.03 E-value=1.6e-09 Score=91.29 Aligned_cols=163 Identities=18% Similarity=0.109 Sum_probs=92.0
Q ss_pred hcccceeEEEecCCchhh-hhhcCCceEEecccCCCcchHHHHHHhcc--cCcEEEEccCCCCCHHHHHHHHHHHHHHHh
Q psy9483 7 CATVTLSIYVCSEGAVPI-LKNYSPELIVLPHYLDRNDSVDHIMYWMN--RMHSVLIGPGLGTEPLVQSNVISIIHKLKA 83 (186)
Q Consensus 7 r~GaGlv~v~~~~~~~~~-~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~--~~~aivIGpGlg~~~~~~~~~~~~l~~~~~ 83 (186)
..|+..+|.+|.|+.... +. .+.+. +.+...+++...++ .+|++.+|+ +++ .++.+.+.+.++.
T Consensus 30 ~~~~~v~Ta~t~q~~~~~~~~------~v~~~--~~~~i~~q~~~l~~d~~~~~ikiG~-l~~-~~~v~~i~~~~~~--- 96 (268)
T PRK12412 30 VYGMTSLTTIVTMDPHNGWAH------NVFPI--PASTLKPQLETTIEGVGVDALKTGM-LGS-VEIIEMVAETIEK--- 96 (268)
T ss_pred CeeceeeeEEEeEcCCCCcEE------EEEeC--CHHHHHHHHHHHHhCCCCCEEEECC-CCC-HHHHHHHHHHHHh---
Confidence 346677788887765321 11 11221 10001123333343 389999998 764 4455555555543
Q ss_pred cCCCC-CEEEeccccc-----ccccC-cc-ccc-ccCCCeEecCCHHHHhhhcCC--C---hH-HHHH-HHHhCCCEEEE
Q psy9483 84 ANLNV-PLVIDADGLK-----LVAEH-PG-LIQ-DYRGPVYLTPNKREYENLLSG--S---EV-NAAY-IKQGHPNLTVI 147 (186)
Q Consensus 84 ~~~~~-p~VlDadal~-----~l~~~-~~-l~~-~~~~~~iiTPh~~E~~rL~~~--~---~~-~~a~-~a~~~~~~~vv 147 (186)
. +. ++|+||.-.. .+... .+ +.+ ..+...++|||..|++.|++. + +. ++++ +.+.. -..|+
T Consensus 97 ~--~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~~~~~~~aa~~l~~~g-~~~Vi 173 (268)
T PRK12412 97 H--NFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSGVKINSLEDMKEAAKKIHALG-AKYVL 173 (268)
T ss_pred c--CCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhCcCCCCHHHHHHHHHHHHhcC-CCEEE
Confidence 3 44 4999996432 11111 01 111 235679999999999999996 2 22 2555 65544 35788
Q ss_pred EeCCe--------eEEEcCCeEEEEc-CCCCCCCCCChhHHHHhhhc
Q psy9483 148 VKGHE--------DVIKNNQISLTCK-EGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 148 lKG~~--------~~I~~~~~~~~~~-~g~~~la~~GsGDvLaGiia 185 (186)
+|+.+ +++++++..+... ..-+.-.++|+||+|++.++
T Consensus 174 It~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~a 220 (268)
T PRK12412 174 IKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAIT 220 (268)
T ss_pred EeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHH
Confidence 88765 3455555543332 22233357899999999875
No 23
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.01 E-value=2.7e-09 Score=88.59 Aligned_cols=130 Identities=26% Similarity=0.203 Sum_probs=79.9
Q ss_pred ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecc-----cccccccCc-ccc-ccc-CCCeEecCCHHHHh
Q psy9483 53 NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDAD-----GLKLVAEHP-GLI-QDY-RGPVYLTPNKREYE 124 (186)
Q Consensus 53 ~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDad-----al~~l~~~~-~l~-~~~-~~~~iiTPh~~E~~ 124 (186)
..++++++|+ ++ +.+..+.+.++++.+++..++.++|+|+. .+..+.... +.+ +.. +.+.++|||..|++
T Consensus 71 ~~~~~v~~G~-l~-~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~ 148 (254)
T cd01173 71 LEYDAVLTGY-LG-SAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELE 148 (254)
T ss_pred ccCCEEEEec-CC-CHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHH
Confidence 4689999887 44 45667778888876643211367999995 222111111 111 112 26799999999999
Q ss_pred hhcCC--C---hH-HHHH-HHHhCCCEEEEEeCCe--------eEEEcCCeEE-EEcCCCC-CCCCCChhHHHHhhhc
Q psy9483 125 NLLSG--S---EV-NAAY-IKQGHPNLTVIVKGHE--------DVIKNNQISL-TCKEGNS-WRRCGGQGDLVAGHRD 185 (186)
Q Consensus 125 rL~~~--~---~~-~~a~-~a~~~~~~~vvlKG~~--------~~I~~~~~~~-~~~~g~~-~la~~GsGDvLaGiia 185 (186)
.|++. + +. +.++ +.+.. -..|++|+.+ .+++++++.+ +....-+ -..+.|+||.|++.++
T Consensus 149 ~l~g~~~~~~~~~~~~~~~l~~~g-~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~ 225 (254)
T cd01173 149 LLTGKKINDLEDAKAAARALHAKG-PKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLL 225 (254)
T ss_pred HHcCCCcCCHHHHHHHHHHHHHhC-CCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHH
Confidence 99997 1 22 2556 66665 3678889654 2344544332 2222222 2578999999988764
No 24
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.00 E-value=5.8e-09 Score=88.52 Aligned_cols=130 Identities=16% Similarity=0.105 Sum_probs=80.3
Q ss_pred ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccc----cc-ccCc-cccc--ccCCCeEecCCHHHHh
Q psy9483 53 NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLK----LV-AEHP-GLIQ--DYRGPVYLTPNKREYE 124 (186)
Q Consensus 53 ~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~----~l-~~~~-~l~~--~~~~~~iiTPh~~E~~ 124 (186)
..+|++++|+ ++ +.+..+.+.++++..++.+++.++|+||.-.. .+ .... +.++ ..+...+||||..|++
T Consensus 87 ~~~d~i~~G~-l~-s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~ 164 (281)
T PRK08176 87 RQLRAVTTGY-MG-SASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELE 164 (281)
T ss_pred ccCCEEEECC-CC-CHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHH
Confidence 3789999999 87 45566667777766543212568999996211 11 1110 1121 2255689999999999
Q ss_pred hhcCC---C--hH-HHHH-HHHhCCCEEEEEeCCee---------EEEcCCeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 125 NLLSG---S--EV-NAAY-IKQGHPNLTVIVKGHED---------VIKNNQISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 125 rL~~~---~--~~-~~a~-~a~~~~~~~vvlKG~~~---------~I~~~~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
.|+|. + +. +.++ +.+.. -..||+||... +++++++.++.......-.+.|+||+|++.++
T Consensus 165 ~L~g~~~~~~~~~~~~~~~l~~~g-~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~faa~~~ 240 (281)
T PRK08176 165 ILTGKPCRTLDSAIAAAKSLLSDT-LKWVVITSAAGNEENQEMQVVVVTADSVNVISHPRVDTDLKGTGDLFCAELV 240 (281)
T ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CCEEEEeeccCCCCCCcEEEEEEeCCceEEEecCccCCCCCChhHHHHHHHH
Confidence 99996 2 12 2455 65544 35788888653 34554443333322222358999999998774
No 25
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=98.96 E-value=8.4e-09 Score=94.23 Aligned_cols=161 Identities=20% Similarity=0.215 Sum_probs=92.1
Q ss_pred cccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy9483 8 ATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLN 87 (186)
Q Consensus 8 ~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~ 87 (186)
.|+..+|.+|.|+...... . .++ +.+...+++...+++.+..+|..|+..+.++.+.+.+.++ +
T Consensus 260 ~~~~~vta~t~qn~~~~~~-----~--~~~--~~~~~~~ql~~l~~d~~~~~Ik~G~l~s~e~i~~i~~~l~-------~ 323 (504)
T PTZ00347 260 YSTSALTSLTAQNTKGVQQ-----I--QVV--NEDFFAAQIDSVMSDFNISVVKLGLVPTARQLEIVIEKLK-------N 323 (504)
T ss_pred cccchheeEEeEcCcceee-----E--EeC--CHHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHhc-------C
Confidence 3567788888887655431 1 222 1111234454555544444444443345666666655553 5
Q ss_pred CCEEEecccc-----cccccC--cccc---c--ccCCCeEecCCHHHHhhhcCCC------hH-HHHH-HHHhCCCEEEE
Q psy9483 88 VPLVIDADGL-----KLVAEH--PGLI---Q--DYRGPVYLTPNKREYENLLSGS------EV-NAAY-IKQGHPNLTVI 147 (186)
Q Consensus 88 ~p~VlDadal-----~~l~~~--~~l~---~--~~~~~~iiTPh~~E~~rL~~~~------~~-~~a~-~a~~~~~~~vv 147 (186)
.|+|+||.-. .+.... ++++ + ..+...|||||..|++.|+|.+ +. ++++ +.+ ++-..||
T Consensus 324 ~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~-~G~~~Vv 402 (504)
T PTZ00347 324 LPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYEARAAAQALAQ-YGSRYVL 402 (504)
T ss_pred CCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCCCEEE
Confidence 7899998543 222110 1111 1 2345689999999999999951 12 2555 665 4324899
Q ss_pred EeCCe---------eEEEcC--CeEEEEcCCC-CCCCCCChhHHHHhhhc
Q psy9483 148 VKGHE---------DVIKNN--QISLTCKEGN-SWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 148 lKG~~---------~~I~~~--~~~~~~~~g~-~~la~~GsGDvLaGiia 185 (186)
+||.+ ++++++ +..+...... +...++|+||+|++.++
T Consensus 403 Vtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~GaGD~fsaaia 452 (504)
T PTZ00347 403 VKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGTGCTLASAIS 452 (504)
T ss_pred EeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCChHHHHHHHHH
Confidence 99876 466653 3444443322 23468999999999875
No 26
>PRK07105 pyridoxamine kinase; Validated
Probab=98.89 E-value=3.5e-08 Score=83.56 Aligned_cols=168 Identities=15% Similarity=0.077 Sum_probs=93.5
Q ss_pred cccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy9483 8 ATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLN 87 (186)
Q Consensus 8 ~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~ 87 (186)
.++.++|+++.+....... +.. .++...-...++.+.+.-..+|++.+|+ ++. .+..+.+.++++..++. +
T Consensus 34 ~~~~v~T~~~~q~t~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~aik~G~-l~~-~~~~~~v~~~~~~~~~~--~ 104 (284)
T PRK07105 34 QVCPLPTALLSSHTGGFQN---PSI--IDLTDGMQAFLTHWKSLNLKFDAIYSGY-LGS-PRQIQIVSDFIKYFKKK--D 104 (284)
T ss_pred cceeccceEeccCCCCCCC---CeE--eecHHHHHHHHHHHHHcCCccCEEEECc-CCC-HHHHHHHHHHHHHhccC--C
Confidence 3567778888777653221 111 1110000011222222223699999998 664 55667777777665444 6
Q ss_pred CCEEEeccccc-----c-cccC-cccc-cccCCCeEecCCHHHHhhhcCCC------hHH----HHH-HHHhCCCEEEEE
Q psy9483 88 VPLVIDADGLK-----L-VAEH-PGLI-QDYRGPVYLTPNKREYENLLSGS------EVN----AAY-IKQGHPNLTVIV 148 (186)
Q Consensus 88 ~p~VlDadal~-----~-l~~~-~~l~-~~~~~~~iiTPh~~E~~rL~~~~------~~~----~a~-~a~~~~~~~vvl 148 (186)
.|+|+||.-.. . +... .+.+ +..+...++|||..|++.|++.+ ..+ .++ +.+... ..|++
T Consensus 105 ~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~~~~~~~~~~~~~~~~a~~l~~~g~-~~Vvv 183 (284)
T PRK07105 105 LLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDKPYLEKSYSEEEIKQLLRKLADLGP-KIVII 183 (284)
T ss_pred CeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCCCcCcCCCCHHHHHHHHHHHHhcCC-CEEEE
Confidence 78999996321 0 0100 0111 12356799999999999999961 122 445 655442 57899
Q ss_pred eC-----C-e-eEEEcC--CeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 149 KG-----H-E-DVIKNN--QISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 149 KG-----~-~-~~I~~~--~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
|| . . .+.+++ +..+........-.+.|+||+|++.++
T Consensus 184 t~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~aa~~ 229 (284)
T PRK07105 184 TSVPFEDGKIGVAYYDRATDRFWKVFCKYIPAHYPGTGDIFTSVIT 229 (284)
T ss_pred cCeeeCCCeEEEEEEeCCCCeEEEEeecccCCCcCChhHHHHHHHH
Confidence 97 2 2 233442 234433322222457999999998764
No 27
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=98.78 E-value=5e-08 Score=88.06 Aligned_cols=164 Identities=20% Similarity=0.223 Sum_probs=93.4
Q ss_pred hhcccceeEEEecCCchhhhh--hcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHh
Q psy9483 6 QCATVTLSIYVCSEGAVPILK--NYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKA 83 (186)
Q Consensus 6 ~r~GaGlv~v~~~~~~~~~~~--~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~ 83 (186)
-..|+.++|.+|.|+...... ...|+++ .+.++.+.+.++ .+++.+|+ ++ +.++.. .+++.+++
T Consensus 30 g~~~~~v~Ta~t~Qnt~~~~~i~~~~~~~~--------~~q~~a~~~d~~-~~~ik~G~-l~-~~e~~~---~i~~~~k~ 95 (448)
T PRK08573 30 GVHGAVAITSVTAQNTYEVRAIHDLPPEVV--------AAQIEAVWEDMG-IDAAKTGM-LS-NREIIE---AVAKTVSK 95 (448)
T ss_pred CCeecccceEEEeecCCCceEEEECCHHHH--------HHHHHHHHhcCC-CCEEEECC-cC-CHHHHH---HHHHHHHH
Confidence 346788999999998854321 1112111 011233333222 57777777 55 444434 33444444
Q ss_pred cCCCCCEEEecccc-----cccccCc--cccc-ccCCCeEecCCHHHHhhhcCC--C---hH-HHHH-HHHhCCCEEEEE
Q psy9483 84 ANLNVPLVIDADGL-----KLVAEHP--GLIQ-DYRGPVYLTPNKREYENLLSG--S---EV-NAAY-IKQGHPNLTVIV 148 (186)
Q Consensus 84 ~~~~~p~VlDadal-----~~l~~~~--~l~~-~~~~~~iiTPh~~E~~rL~~~--~---~~-~~a~-~a~~~~~~~vvl 148 (186)
. +.|+|+||.-. .+...+. .+.+ ..+...++|||..|++.|+|. . +. ++++ +.++++-..|++
T Consensus 96 ~--g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~~L~~~~G~~~VvV 173 (448)
T PRK08573 96 Y--GFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAKYIVEELGAEAVVV 173 (448)
T ss_pred c--CCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 5 78999998422 2221110 1111 124558999999999999996 2 22 2566 766553247888
Q ss_pred eCCe-------eEEEcCCeEEEEcC-CCCCCCCCChhHHHHhhhc
Q psy9483 149 KGHE-------DVIKNNQISLTCKE-GNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 149 KG~~-------~~I~~~~~~~~~~~-g~~~la~~GsGDvLaGiia 185 (186)
||.+ ++++.++..+.... ..+...+.|+||+|++.++
T Consensus 174 t~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~a 218 (448)
T PRK08573 174 KGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIA 218 (448)
T ss_pred ecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHH
Confidence 8753 35555555433332 2223458999999998764
No 28
>KOG2598|consensus
Probab=98.76 E-value=1.9e-08 Score=89.35 Aligned_cols=129 Identities=22% Similarity=0.194 Sum_probs=81.3
Q ss_pred cccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccC---c---cccc--ccCCCeEecCCHHHH
Q psy9483 52 MNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEH---P---GLIQ--DYRGPVYLTPNKREY 123 (186)
Q Consensus 52 ~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~---~---~l~~--~~~~~~iiTPh~~E~ 123 (186)
+....+=|+-.||..+.+....+.+.++.. + -..+|+||.-....-.. + +++. ..|...|+|||..|.
T Consensus 88 L~Di~C~VvKTGML~~~~I~~vi~q~l~~~--~--~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea 163 (523)
T KOG2598|consen 88 LSDIKCDVVKTGMLPSPEIVKVIEQSLQKF--N--IPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEA 163 (523)
T ss_pred hhcCcccEEeecCcCchHHHHHHHHHHHhh--c--CcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHH
Confidence 344555555555666777878777777653 2 34599999655322211 1 2222 235558999999999
Q ss_pred hhhcCC--C------hH-HHHH----HHHhCCCEEEEEeCCe-------------------eEEEcCCeEEEEcC-CCCC
Q psy9483 124 ENLLSG--S------EV-NAAY----IKQGHPNLTVIVKGHE-------------------DVIKNNQISLTCKE-GNSW 170 (186)
Q Consensus 124 ~rL~~~--~------~~-~~a~----~a~~~~~~~vvlKG~~-------------------~~I~~~~~~~~~~~-g~~~ 170 (186)
-.|++. . ++ +.++ +.+--+ -.|++||.+ |+++++++++..+. -..-
T Consensus 164 ~~Ll~~~~~~~~~i~~v~di~~~~~~ihk~gp-k~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t 242 (523)
T KOG2598|consen 164 FILLKKEKREISKIQSVFDIAKDAAKIHKLGP-KNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLAT 242 (523)
T ss_pred HHHHhhcccCCcccccHHHHHHHHHHHHhcCc-ceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEeccccccc
Confidence 999994 1 11 2222 444443 579999986 45666766655542 2333
Q ss_pred CCCCChhHHHHhhhc
Q psy9483 171 RRCGGQGDLVAGHRD 185 (186)
Q Consensus 171 la~~GsGDvLaGiia 185 (186)
..++||||.||..||
T Consensus 243 ~~tHGtgCtLaSAIA 257 (523)
T KOG2598|consen 243 KHTHGTGCTLASAIA 257 (523)
T ss_pred ccccCccchHHHHHH
Confidence 359999999999987
No 29
>PRK05756 pyridoxamine kinase; Validated
Probab=98.74 E-value=2.3e-07 Score=78.58 Aligned_cols=130 Identities=19% Similarity=0.173 Sum_probs=79.7
Q ss_pred ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccc----ccccCc--ccc-c-ccCCCeEecCCHHHHh
Q psy9483 53 NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLK----LVAEHP--GLI-Q-DYRGPVYLTPNKREYE 124 (186)
Q Consensus 53 ~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~----~l~~~~--~l~-~-~~~~~~iiTPh~~E~~ 124 (186)
..+|++++|. ++. .+..+.+.++++.+++...+..+|+||.-.. ...... +.+ + ..+.+.+||||..|++
T Consensus 73 ~~~~~v~~G~-l~~-~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~ 150 (286)
T PRK05756 73 GECDAVLSGY-LGS-AEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELE 150 (286)
T ss_pred ccCCEEEECC-CCC-HHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHH
Confidence 4789999998 774 4466777788876654411245899985332 111111 111 1 2346799999999999
Q ss_pred hhcCC--C---hH-HHHH-HHHhCCCEEEEEeCCe----------eEEEcCCeEEEEcCC-CCC-CCCCChhHHHHhhhc
Q psy9483 125 NLLSG--S---EV-NAAY-IKQGHPNLTVIVKGHE----------DVIKNNQISLTCKEG-NSW-RRCGGQGDLVAGHRD 185 (186)
Q Consensus 125 rL~~~--~---~~-~~a~-~a~~~~~~~vvlKG~~----------~~I~~~~~~~~~~~g-~~~-la~~GsGDvLaGiia 185 (186)
.|++. . +. +.++ +.+.. -..|++|+.+ .+.+++++.+..... .+. ..+.|+||++++.+.
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l~~~g-~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~~~ 229 (286)
T PRK05756 151 WLSGRPVETLEDAVAAARALIARG-PKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSALFL 229 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHhC-CCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHHHH
Confidence 99996 2 22 2455 55544 2568888743 234455545444322 233 377999999998764
No 30
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=98.72 E-value=3.1e-07 Score=76.25 Aligned_cols=127 Identities=18% Similarity=0.138 Sum_probs=73.8
Q ss_pred cCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccccc---Cc---ccc-cccCCCeEecCCHHHHhhh
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAE---HP---GLI-QDYRGPVYLTPNKREYENL 126 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~---~~---~l~-~~~~~~~iiTPh~~E~~rL 126 (186)
..+..+|-.|+..+.+..+.+.++++. .. +.|+|+||.-...+-. .+ +.+ +..+...+||||..|++.|
T Consensus 68 ~~~~~~i~~G~l~~~~~~~~~~~~~~~--~~--~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L 143 (253)
T PRK12413 68 DVPFSAIKIGLLPNVEIAEQALDFIKG--HP--GIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELL 143 (253)
T ss_pred CCCCCEEEECCcCCHHHHHHHHHHHHh--CC--CCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHH
Confidence 344444444444355444545555542 23 6799999864432211 11 112 1234458999999999999
Q ss_pred cCC--C---hH-HHHH-HHHhCCCEEEEEeCCe--------eEEEcCCeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 127 LSG--S---EV-NAAY-IKQGHPNLTVIVKGHE--------DVIKNNQISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 127 ~~~--~---~~-~~a~-~a~~~~~~~vvlKG~~--------~~I~~~~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
+|. + +. +.++ +.+.. ...|++|+.. +++++++..++.........+.|+||.|+|.++
T Consensus 144 ~g~~~~~~~~~~~~a~~l~~~g-~~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGDaf~a~~~ 216 (253)
T PRK12413 144 SGKEIKTLEDMKEAAKKLYDLG-AKAVVIKGGNRLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGCTFASSIA 216 (253)
T ss_pred hCcCCCCHHHHHHHHHHHHHcC-CCEEEEeCCCCCCCCcceEEEEcCCEEEEEeecccCCCCCChHHHHHHHHH
Confidence 996 2 22 2555 65544 3578888764 355666655554332333458999999998764
No 31
>PLN02978 pyridoxal kinase
Probab=98.70 E-value=1.6e-07 Score=80.89 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=76.8
Q ss_pred cCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccc---c-cccC-cccc-c-ccCCCeEecCCHHHHhhh
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLK---L-VAEH-PGLI-Q-DYRGPVYLTPNKREYENL 126 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~---~-l~~~-~~l~-~-~~~~~~iiTPh~~E~~rL 126 (186)
.+|++++|. +++ ++..+.+.++++.+++..++.++|+||.--. + ...+ .+.+ + ..+...|||||.-|++.|
T Consensus 86 ~~~ai~~G~-l~s-~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 86 FYTHLLTGY-IGS-VSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred ccCEEEecc-cCC-HHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 479999998 774 5677778888877654311466999995211 1 1111 0111 1 234568999999999999
Q ss_pred cCC--C---hH-HHHH-HHHhCCCEEEEEeCCe---eE-EEc------C--CeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 127 LSG--S---EV-NAAY-IKQGHPNLTVIVKGHE---DV-IKN------N--QISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 127 ~~~--~---~~-~~a~-~a~~~~~~~vvlKG~~---~~-I~~------~--~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
++. . +. +.++ +.+.. ...||+||-. .+ +.. + +..|......-.-...||||+|+++++
T Consensus 164 ~g~~~~~~~~~~~a~~~l~~~g-~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~GtGD~fsA~la 240 (308)
T PLN02978 164 TGIRIVTEEDAREACAILHAAG-PSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAYFTGTGDLMAALLL 240 (308)
T ss_pred hCCCCCCHHHHHHHHHHHHHhC-CCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCCCCCchHHHHHHHH
Confidence 996 2 22 2455 65544 3578887732 12 221 1 233433322212236899999999875
No 32
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=98.64 E-value=7.7e-07 Score=69.94 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=78.2
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC--Ch-
Q psy9483 55 MHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG--SE- 131 (186)
Q Consensus 55 ~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~--~~- 131 (186)
+|.++++..... .+.+.++++.+++. +.|+++|+..........++.+..+.+.+++||..|+++|++. .+
T Consensus 58 ~~~v~i~~~~~~----~~~~~~~~~~~~~~--~~~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~ 131 (196)
T cd00287 58 ADAVVISGLSPA----PEAVLDALEEARRR--GVPVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRDLEV 131 (196)
T ss_pred ccEEEEecccCc----HHHHHHHHHHHHHc--CCeEEEeCCccccccccchHHHHHhhCCEECCCHHHHHHHhCCCCCCh
Confidence 778888775432 22344555556566 8899999987754433222222234579999999999999987 22
Q ss_pred --H-HHHH-HHHhCCCEEEEEeCCee-EEEc-CCeEEEEcCCC-CCCCCCChhHHHHhhh
Q psy9483 132 --V-NAAY-IKQGHPNLTVIVKGHED-VIKN-NQISLTCKEGN-SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 132 --~-~~a~-~a~~~~~~~vvlKG~~~-~I~~-~~~~~~~~~g~-~~la~~GsGDvLaGii 184 (186)
. +.++ +.++..+.+|+-.|+.. ++++ ++..+...... ....+.|.||.++|-+
T Consensus 132 ~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~ 191 (196)
T cd00287 132 KEAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAAL 191 (196)
T ss_pred HHHHHHHHHHHhcCCCEEEEEECCCccEEEecCCceEEcCCccCCcccCCCchHHHHHHH
Confidence 1 3455 65554345566666544 4556 55565555432 3346999999998754
No 33
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=98.61 E-value=3.9e-07 Score=77.46 Aligned_cols=131 Identities=22% Similarity=0.203 Sum_probs=80.7
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEec-----ccccccccCccccc--ccCCCeEecCCHHHH
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA-----DGLKLVAEHPGLIQ--DYRGPVYLTPNKREY 123 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDa-----dal~~l~~~~~l~~--~~~~~~iiTPh~~E~ 123 (186)
+...+|+|+-|. +|+.+ ..+.+.++++..++.+++.-+++|| +++..-.+.++..+ ..+...++|||.-|+
T Consensus 70 ~~~~~davltGY-lgs~~-qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fEL 147 (281)
T COG2240 70 KLGECDAVLTGY-LGSAE-QVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFEL 147 (281)
T ss_pred cccccCEEEEcc-CCCHH-HHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHH
Confidence 456799999999 88654 5566778888776653333378888 45543333332222 234568999999999
Q ss_pred hhhcCC--ChH----HHHH-HHHhCCCEEEEEeCCee-------EEEcCC---eEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 124 ENLLSG--SEV----NAAY-IKQGHPNLTVIVKGHED-------VIKNNQ---ISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 124 ~rL~~~--~~~----~~a~-~a~~~~~~~vvlKG~~~-------~I~~~~---~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
+.|+|. ... ++++ +.+..+ ..|++|+..- +++... ..+.....-| ...-|+||++|+++.
T Consensus 148 e~Ltg~~~~~~~da~~aa~~L~~~gp-~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~GtGDL~salll 224 (281)
T COG2240 148 EILTGKPLNTLDDAVKAARKLGADGP-KIVLVTSLSRAGMSTGNFEMLGKSAELAWHISPLVP-FIPNGTGDLFSALLL 224 (281)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCC-CEEEEecccccCCCCceEEEeccchhhhhhhhhcCC-CCCCCchHHHHHHHH
Confidence 999998 222 2556 555554 6788876543 232221 1111110111 127899999999863
No 34
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=98.54 E-value=2.2e-06 Score=72.62 Aligned_cols=130 Identities=25% Similarity=0.230 Sum_probs=76.7
Q ss_pred ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecc-----cccccccC-ccccc--ccCCCeEecCCHHHHh
Q psy9483 53 NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDAD-----GLKLVAEH-PGLIQ--DYRGPVYLTPNKREYE 124 (186)
Q Consensus 53 ~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDad-----al~~l~~~-~~l~~--~~~~~~iiTPh~~E~~ 124 (186)
+.+|++++|. ++. .+..+.+.++++.+++.+.+.++|+||. +....... .+.++ ..+...++|||..|++
T Consensus 73 ~~~d~v~~G~-l~~-~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~ 150 (286)
T TIGR00687 73 NQCDAVLSGY-LGS-AEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELE 150 (286)
T ss_pred ccCCEEEECC-CCC-HHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHH
Confidence 4799999998 664 4566777788876654411356899993 11111111 12221 2245689999999999
Q ss_pred hhcCC--C---hH-HHHH-HHHhCCCEEEEEe--CCe---------eEEEcCCeEEEEcCC-CC-CCCCCChhHHHHhhh
Q psy9483 125 NLLSG--S---EV-NAAY-IKQGHPNLTVIVK--GHE---------DVIKNNQISLTCKEG-NS-WRRCGGQGDLVAGHR 184 (186)
Q Consensus 125 rL~~~--~---~~-~~a~-~a~~~~~~~vvlK--G~~---------~~I~~~~~~~~~~~g-~~-~la~~GsGDvLaGii 184 (186)
.|++. + +. +.++ +.+... ..|++| |.. .+.++++..+..... .+ ...+.|+||.+++.+
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l~~~g~-~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A~~ 229 (286)
T TIGR00687 151 LLTGRKINTVEEALAAADALIAMGP-DIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAALL 229 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHhCC-CEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHHHH
Confidence 99996 2 22 2455 555443 456777 221 133444444433322 22 235699999999876
Q ss_pred c
Q psy9483 185 D 185 (186)
Q Consensus 185 a 185 (186)
.
T Consensus 230 l 230 (286)
T TIGR00687 230 L 230 (286)
T ss_pred H
Confidence 3
No 35
>PTZ00344 pyridoxal kinase; Provisional
Probab=98.50 E-value=1.9e-06 Score=73.55 Aligned_cols=129 Identities=18% Similarity=0.148 Sum_probs=74.9
Q ss_pred cCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccc---ccccC--ccccc-ccCCCeEecCCHHHHhhhc
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLK---LVAEH--PGLIQ-DYRGPVYLTPNKREYENLL 127 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~---~l~~~--~~l~~-~~~~~~iiTPh~~E~~rL~ 127 (186)
..+++++|. ++ +.+..+.+.++++.+++...+.++|+||.--. +.... .+.++ ..+.+.++|||..|++.|+
T Consensus 77 ~~~~v~sG~-l~-~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~~E~~~L~ 154 (296)
T PTZ00344 77 DYTYVLTGY-IN-SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQFEASLLS 154 (296)
T ss_pred cCCEEEECC-CC-CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCHHHHHHHh
Confidence 579999998 87 46677777777766544311136999986321 11111 01121 2346799999999999999
Q ss_pred CC--Ch---H-HHHH-HHHhCCCEEEEEeCCe---e------EEE--cC----CeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 128 SG--SE---V-NAAY-IKQGHPNLTVIVKGHE---D------VIK--NN----QISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 128 ~~--~~---~-~~a~-~a~~~~~~~vvlKG~~---~------~I~--~~----~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
|. ++ . +.++ +.+.. -..||+||.+ + +.. .. ++.|......-.-.+.|+||++++.++
T Consensus 155 g~~~~~~~~~~~~~~~l~~~g-~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~A~~~ 233 (296)
T PTZ00344 155 GVEVKDLSDALEAIDWFHEQG-IPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIEGRYTGTGDLFAALLL 233 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccCCCCCCchHHHHHHHH
Confidence 96 22 2 2455 65554 2567788332 1 222 11 223333221111256899999998764
No 36
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=98.13 E-value=3.8e-05 Score=66.38 Aligned_cols=131 Identities=18% Similarity=0.297 Sum_probs=85.5
Q ss_pred HHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHh
Q psy9483 45 VDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYE 124 (186)
Q Consensus 45 ~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~ 124 (186)
.+.+...++..|.+++.=-+...- -.+...++++.+++. ++++++|.++-.+..- ++ .+|.+|.||.-|++
T Consensus 120 l~~~~~~l~~~d~VvlsGSlP~g~-~~d~y~~li~~~~~~--g~~vilD~Sg~~L~~~----L~--~~P~lIKPN~~EL~ 190 (310)
T COG1105 120 LEQLKALLESDDIVVLSGSLPPGV-PPDAYAELIRILRQQ--GAKVILDTSGEALLAA----LE--AKPWLIKPNREELE 190 (310)
T ss_pred HHHHHHhcccCCEEEEeCCCCCCC-CHHHHHHHHHHHHhc--CCeEEEECChHHHHHH----Hc--cCCcEEecCHHHHH
Confidence 344555567788877765343331 123455667777777 8999999998765432 22 24899999999999
Q ss_pred hhcCC--C---h-HHHHH--HHHhCCCEEEEEeCCeeEEEcCCeEEEEcCC-CCCCCCCChhHHH-Hhhh
Q psy9483 125 NLLSG--S---E-VNAAY--IKQGHPNLTVIVKGHEDVIKNNQISLTCKEG-NSWRRCGGQGDLV-AGHR 184 (186)
Q Consensus 125 rL~~~--~---~-~~~a~--~a~~~~~~~vvlKG~~~~I~~~~~~~~~~~g-~~~la~~GsGDvL-aGii 184 (186)
.++|. . + +.+++ ..+...+.+|-+.+.-.+.++++..|+.... ...-++.|.||.+ ||++
T Consensus 191 ~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~ 260 (310)
T COG1105 191 ALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFL 260 (310)
T ss_pred HHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHH
Confidence 99998 2 2 22444 4444545566666777788887777777622 2234799999964 5554
No 37
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=98.04 E-value=0.00017 Score=61.24 Aligned_cols=126 Identities=18% Similarity=0.292 Sum_probs=74.4
Q ss_pred HHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhc
Q psy9483 48 IMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL 127 (186)
Q Consensus 48 ~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~ 127 (186)
..+.++.+|.+++..- ....-..+.+..+++.+++. ++|+++|+.+.. +...+...+++||..|+..|+
T Consensus 137 ~~~~l~~~~~v~~~~~-~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~--------~~~~~~~d~l~~n~~E~~~l~ 205 (315)
T TIGR02198 137 IREQLASADAVVLSDY-AKGVLTPRVVQEVIAAARKH--GKPVLVDPKGKD--------FSRYRGATLITPNRKEAEAAV 205 (315)
T ss_pred HHhhhhhCCEEEEecC-CCCccCHHHHHHHHHHHHhc--CCCEEEeCCCcc--------hhhcCCCcEECCCHHHHHHHh
Confidence 3445678999999521 11111113344555656666 889999997541 112345689999999999999
Q ss_pred CC-C---hH-HHHH-HHHhCC-CEEEEEeCCeeE-EEc-CCeEEEEcCC-CCCCCCCChhHHHHhhh
Q psy9483 128 SG-S---EV-NAAY-IKQGHP-NLTVIVKGHEDV-IKN-NQISLTCKEG-NSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 128 ~~-~---~~-~~a~-~a~~~~-~~~vvlKG~~~~-I~~-~~~~~~~~~g-~~~la~~GsGDvLaGii 184 (186)
+. + +. +.++ +.++++ ..+||=.|..-. +++ ++..+....- ...-.+.|+||.++|.+
T Consensus 206 ~~~~~~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~ 272 (315)
T TIGR02198 206 GACDTEAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATL 272 (315)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHH
Confidence 85 1 22 2444 544442 345555555444 344 3445544432 22336899999988754
No 38
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=97.95 E-value=0.00026 Score=63.95 Aligned_cols=125 Identities=18% Similarity=0.319 Sum_probs=73.2
Q ss_pred HHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhc
Q psy9483 48 IMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL 127 (186)
Q Consensus 48 ~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~ 127 (186)
+.+.++.++.+++. ++... ....+..+++.+++. +.|+++||.+..+ ...+...+++||..|+..|+
T Consensus 137 ~~~~l~~~~~v~is-~~~~~--~~~~~~~~~~~~k~~--g~~vv~Dp~~~~~--------~~~~~~dil~pN~~Ea~~l~ 203 (473)
T PRK11316 137 IEQALPSIGALVLS-DYAKG--ALASVQAMIQLARKA--GVPVLIDPKGTDF--------ERYRGATLLTPNLSEFEAVV 203 (473)
T ss_pred HHHHhccCCEEEEe-cCCcc--chhHHHHHHHHHHhc--CCeEEEeCCCCCc--------cccCCCeEECcCHHHHHHHh
Confidence 34557789998884 33211 122344555555556 7899999976421 12234689999999999999
Q ss_pred CC-ChH----HHHH-HHHhCC-CEEEEEeCCee-EEEcCCe-EEEEcCC-CCCCCCCChhHHHHhhhc
Q psy9483 128 SG-SEV----NAAY-IKQGHP-NLTVIVKGHED-VIKNNQI-SLTCKEG-NSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 128 ~~-~~~----~~a~-~a~~~~-~~~vvlKG~~~-~I~~~~~-~~~~~~g-~~~la~~GsGDvLaGiia 185 (186)
+. ... +.++ +.++++ ..++|=.|..- ++++++. .+....- -..--+.|+||+++|.+.
T Consensus 204 g~~~~~~~~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~ 271 (473)
T PRK11316 204 GKCKDEAELVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLA 271 (473)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHH
Confidence 96 221 2444 555553 23444444444 3444443 3433321 112258999999887653
No 39
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=97.89 E-value=0.00029 Score=59.13 Aligned_cols=123 Identities=15% Similarity=0.252 Sum_probs=72.8
Q ss_pred hcccCcEEEE-ccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC
Q psy9483 51 WMNRMHSVLI-GPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG 129 (186)
Q Consensus 51 ~~~~~~aivI-GpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~ 129 (186)
.++++|.+++ |.- ... .....+..+++.+++. ++|+++|++...+. +.+. +.+.+++||..|++.|++.
T Consensus 125 ~~~~~~~~~i~g~~-~~~-~~~~~~~~~~~~~~~~--~~~i~~D~~~~~~~----~~~~--~~~dil~~n~~E~~~l~~~ 194 (289)
T cd01164 125 LLKKGDIVVLSGSL-PPG-VPADFYAELVRLAREK--GARVILDTSGEALL----AALA--AKPFLIKPNREELEELFGR 194 (289)
T ss_pred hcCCCCEEEEeCCC-CCC-cCHHHHHHHHHHHHHc--CCeEEEECChHHHH----HHHh--cCCcEECCCHHHHHHHhCC
Confidence 3568999988 442 211 1122344455545555 78999999753211 2221 3569999999999999986
Q ss_pred --C---hH-HHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCC-CCCCCCCChhHHHHhh
Q psy9483 130 --S---EV-NAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEG-NSWRRCGGQGDLVAGH 183 (186)
Q Consensus 130 --~---~~-~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g-~~~la~~GsGDvLaGi 183 (186)
. +. +.++ +.++....+|+-.|..- +++++++.+....- ....-+.|.||.++|.
T Consensus 195 ~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~ 257 (289)
T cd01164 195 PLGDEEDVIAAARKLIERGAENVLVSLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAG 257 (289)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHH
Confidence 1 22 2555 66665335555556544 34455555544432 2234699999998554
No 40
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=97.87 E-value=0.00055 Score=57.61 Aligned_cols=124 Identities=21% Similarity=0.324 Sum_probs=74.5
Q ss_pred HHHhcccCcEEEE-ccCCC-CCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhh
Q psy9483 48 IMYWMNRMHSVLI-GPGLG-TEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYEN 125 (186)
Q Consensus 48 ~~~~~~~~~aivI-GpGlg-~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~r 125 (186)
..+.++.+|.+++ |.+.+ ..+ +.+..+++.+++. ++++++|+..... ...+.+.+++||..|+..
T Consensus 128 ~~~~l~~~~~v~~s~~~~~~~~~---~~~~~~~~~a~~~--~~~v~~D~~~~~~--------~~~~~~d~l~~n~~E~~~ 194 (304)
T cd01172 128 IAERLPEADVVILSDYGKGVLTP---RVIEALIAAAREL--GIPVLVDPKGRDY--------SKYRGATLLTPNEKEARE 194 (304)
T ss_pred HHHhhccCCEEEEEcCCCCccCH---HHHHHHHHHHHhc--CCCEEEeCCCcch--------hhccCCcEeCCCHHHHHH
Confidence 3445788999998 33221 123 2344455555555 7899999976432 123356899999999999
Q ss_pred hcCC--C---hHH-HHH-HHHhCC-CEEEEEeCCee-EEEc-CCeEEEEcCCC-CCCCCCChhHHHHhhh
Q psy9483 126 LLSG--S---EVN-AAY-IKQGHP-NLTVIVKGHED-VIKN-NQISLTCKEGN-SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 126 L~~~--~---~~~-~a~-~a~~~~-~~~vvlKG~~~-~I~~-~~~~~~~~~g~-~~la~~GsGDvLaGii 184 (186)
|++. + +.+ .++ +.++++ ..+|+=.|..- ++++ +++.+....-. ..--+.|.||.+.|-+
T Consensus 195 l~~~~~~~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~ 264 (304)
T cd01172 195 ALGDEINDDDELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATL 264 (304)
T ss_pred HhCCCCCChHHHHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHH
Confidence 9986 1 222 455 554432 34555556543 4445 45555554322 2336999999987643
No 41
>KOG2599|consensus
Probab=97.81 E-value=0.0001 Score=62.47 Aligned_cols=129 Identities=24% Similarity=0.175 Sum_probs=78.8
Q ss_pred ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccc---cccccCcccccc-----cCCCeEecCCHHHHh
Q psy9483 53 NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGL---KLVAEHPGLIQD-----YRGPVYLTPNKREYE 124 (186)
Q Consensus 53 ~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal---~~l~~~~~l~~~-----~~~~~iiTPh~~E~~ 124 (186)
..+|+++=|. ++ +-...+.+.++++.+++.+++..||+||+=- .+-- ..+++.. .+...+||||.-|++
T Consensus 80 ~~Y~~vLTGY-~~-n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV-~eelipvYr~~i~~ladiiTPNqFE~E 156 (308)
T KOG2599|consen 80 NKYDAVLTGY-LP-NVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYV-PEELIPVYRDLIIPLADIITPNQFEAE 156 (308)
T ss_pred cccceeeeec-cC-ChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEec-cHHHHHHHHHhhcchhhhcCCcchhhh
Confidence 5799999998 66 4445677778887777664455699999422 1111 1122221 123589999999999
Q ss_pred hhcCC--C-hH---HHHH-HHHhCCCEEEEEeCCe-------eEEE---c-CCeEEEEcCCCCCCCCCChhHHHHhhhc
Q psy9483 125 NLLSG--S-EV---NAAY-IKQGHPNLTVIVKGHE-------DVIK---N-NQISLTCKEGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 125 rL~~~--~-~~---~~a~-~a~~~~~~~vvlKG~~-------~~I~---~-~~~~~~~~~g~~~la~~GsGDvLaGiia 185 (186)
-|.|. . +. ++.+ +.+++. .+||+++.. ++.+ + +...|+..-..-..-..||||.+|+++.
T Consensus 157 iLtg~~I~t~eda~~a~~~lhq~~v-~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~~FtGTGDLfsaLLl 234 (308)
T KOG2599|consen 157 ILTGMEIRTEEDAKRAVEKLHQKGV-KTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDGVFTGTGDLFSALLL 234 (308)
T ss_pred hhcCCeeccHHHHHHHHHHHHHhCC-CEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccceEEecccHHHHHHHH
Confidence 99998 2 21 2556 888875 566664322 2332 1 2223333222222248999999999864
No 42
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=97.76 E-value=0.00099 Score=55.65 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=75.1
Q ss_pred HHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHh
Q psy9483 45 VDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYE 124 (186)
Q Consensus 45 ~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~ 124 (186)
+++..+.++.+|.+++.... .. +.+..+++.+++. ++++++|+..... ...++ .+...+++||..|+.
T Consensus 120 ~~~~~~~~~~~~~v~~~~~~--~~---~~~~~~~~~a~~~--g~~v~~D~~~~~~--~~~~~---~~~~dil~~n~~E~~ 187 (292)
T cd01174 120 VDAALELIAAADVLLLQLEI--PL---ETVLAALRAARRA--GVTVILNPAPARP--LPAEL---LALVDILVPNETEAA 187 (292)
T ss_pred HHHHHHhcccCCEEEEeCCC--CH---HHHHHHHHHHHhc--CCEEEEeCCCcCc--CcHHH---HhhCCEEeeCHHHHH
Confidence 34444557789999886322 22 2344555556556 7899999864321 01112 245689999999999
Q ss_pred hhcCC--C---hH-HHHH-HHHhCCCEEEEEeCCeeE-EEcCCeEEEEcCCC-CCCCCCChhHHHHhhh
Q psy9483 125 NLLSG--S---EV-NAAY-IKQGHPNLTVIVKGHEDV-IKNNQISLTCKEGN-SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 125 rL~~~--~---~~-~~a~-~a~~~~~~~vvlKG~~~~-I~~~~~~~~~~~g~-~~la~~GsGDvLaGii 184 (186)
.|++. . +. +.++ +.+.....+|+-.|+.-. +++++..+....-. ....+.|+||.+.+.+
T Consensus 188 ~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~ 256 (292)
T cd01174 188 LLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGAL 256 (292)
T ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHH
Confidence 99987 1 12 2455 544432344444555444 34555554444222 2336999999987653
No 43
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=97.70 E-value=0.00073 Score=57.07 Aligned_cols=126 Identities=17% Similarity=0.217 Sum_probs=74.1
Q ss_pred HhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC
Q psy9483 50 YWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG 129 (186)
Q Consensus 50 ~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~ 129 (186)
+.++++|.++|.-=+.... ..+.+..+++.+++. ++++++|+....+. +.+. ....+++||..|+..|++.
T Consensus 123 ~~~~~~~~v~i~~~~~~~~-~~~~~~~~~~~~~~~--g~~v~~D~~~~~~~----~~~~--~~~dil~~n~~E~~~l~g~ 193 (303)
T TIGR03168 123 ELLASGDIVVISGSLPPGV-PPDFYAQLIAIARKR--GAKVILDTSGEALR----EALA--AKPFLIKPNHEELEELFGR 193 (303)
T ss_pred HhccCCCEEEEeCCCCCCC-CHHHHHHHHHHHHHC--CCEEEEECCcHHHH----HHHh--cCCcEECCCHHHHHHHhCC
Confidence 3467899998842111110 113344555555556 78999999753211 1111 2468999999999999996
Q ss_pred --C---hH-HHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCC-CCCCCCCChhHHHHhhh
Q psy9483 130 --S---EV-NAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEG-NSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 130 --~---~~-~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g-~~~la~~GsGDvLaGii 184 (186)
. +. +.++ +.++..+.+|+-.|..- +++++++.+....- .+..-+.|.||.++|.+
T Consensus 194 ~~~~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~ 257 (303)
T TIGR03168 194 ELKTEEEIIEAARELLDRGAENVLVSLGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGF 257 (303)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHH
Confidence 1 12 2455 55544345555566544 44566655555432 22235999999977654
No 44
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.00055 Score=61.03 Aligned_cols=125 Identities=20% Similarity=0.384 Sum_probs=77.9
Q ss_pred HHHHHHhcccCcEEEE---ccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHH
Q psy9483 45 VDHIMYWMNRMHSVLI---GPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKR 121 (186)
Q Consensus 45 ~~~~~~~~~~~~aivI---GpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~ 121 (186)
++.+.+.++.+|++++ |-|..++ ++.+++.+++. ++|+.+||-+-+.-. +...++||||..
T Consensus 134 l~~~~~~l~~~~~vVLSDY~KG~L~~------~q~~I~~ar~~--~~pVLvDPKg~Df~~--------Y~GAtLiTPN~~ 197 (467)
T COG2870 134 LEKIKNALKSFDALVLSDYAKGVLTN------VQKMIDLAREA--GIPVLVDPKGKDFEK--------YRGATLITPNLK 197 (467)
T ss_pred HHHHHHHhhcCCEEEEeccccccchh------HHHHHHHHHHc--CCcEEECCCCcchhh--------hCCCeecCCCHH
Confidence 4556666788999997 4454433 44556666777 999999999976432 335699999999
Q ss_pred HHhhhcCC--Ch--HH-HHH-HHHhCC-CEEEEEeCCeeE-EEcCCeEEEEc-CCCCCCCCCChhHHHHhhhc
Q psy9483 122 EYENLLSG--SE--VN-AAY-IKQGHP-NLTVIVKGHEDV-IKNNQISLTCK-EGNSWRRCGGQGDLVAGHRD 185 (186)
Q Consensus 122 E~~rL~~~--~~--~~-~a~-~a~~~~-~~~vvlKG~~~~-I~~~~~~~~~~-~g~~~la~~GsGDvLaGiia 185 (186)
||+...|. ++ +. ..+ +.+++. ...+|=+|..-+ .+++++.+... .--.---+.|.||+.-+.+|
T Consensus 198 E~~~~vg~~~~e~el~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la 270 (467)
T COG2870 198 EFEEAVGKCKSEEELEERGQKLKEELDLSALLVTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLA 270 (467)
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCcceEEEEeccCCceeecCCcccccchhheeeeeccCCCchHHHHHH
Confidence 99999998 22 22 345 666663 344444454322 23333322222 22222248999998776654
No 45
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=97.60 E-value=0.00079 Score=56.22 Aligned_cols=131 Identities=13% Similarity=0.070 Sum_probs=74.9
Q ss_pred hcccCcEEEEccCC-CCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccC---cccc-cccCCCeEecCCHHHHhh
Q psy9483 51 WMNRMHSVLIGPGL-GTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEH---PGLI-QDYRGPVYLTPNKREYEN 125 (186)
Q Consensus 51 ~~~~~~aivIGpGl-g~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~---~~l~-~~~~~~~iiTPh~~E~~r 125 (186)
.++++|.+++..=. ...+...+.+.++++.+++. ++++++|+.....+... .+.+ ...+...+++||..|++.
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~ 198 (294)
T cd01166 121 ALAGADHLHLSGITLALSESAREALLEALEAAKAR--GVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEA 198 (294)
T ss_pred HHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHc--CCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHH
Confidence 45679999887422 22232245566677766666 78999999753221000 0111 113456899999999999
Q ss_pred hcCCCh-HH---HHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCCCC-CCCCCChhHHHHhhh
Q psy9483 126 LLSGSE-VN---AAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEGNS-WRRCGGQGDLVAGHR 184 (186)
Q Consensus 126 L~~~~~-~~---~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g~~-~la~~GsGDvLaGii 184 (186)
|++.+. .+ .++ + +.....+|+-.|+.- +++++++.+....-.. .-.+.|+||+++|.+
T Consensus 199 l~~~~~~~~~~~~~~~l-~~g~~~viit~G~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~ 263 (294)
T cd01166 199 LLGDEDPTDAAERALAL-ALGVKAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGF 263 (294)
T ss_pred HhCCCCchhHHHHHHhh-cCCccEEEEEEcCCceEEEECCceEEeCCCCcccccCCCchHHHHHHH
Confidence 998721 12 223 3 222223444455443 3445555555543322 235899999997754
No 46
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=97.58 E-value=0.00098 Score=55.74 Aligned_cols=133 Identities=11% Similarity=0.054 Sum_probs=76.0
Q ss_pred HhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccc-ccC---cc-cccccCCCeEecCCHHHHh
Q psy9483 50 YWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLV-AEH---PG-LIQDYRGPVYLTPNKREYE 124 (186)
Q Consensus 50 ~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l-~~~---~~-l~~~~~~~~iiTPh~~E~~ 124 (186)
+.+++++.+.+++=...++...+.+.++++.+++. ++++++|+.--..+ ... .+ +....+...++.||..|+.
T Consensus 116 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~ 193 (295)
T cd01167 116 DLLSEADILHFGSIALASEPSRSALLELLEAAKKA--GVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELE 193 (295)
T ss_pred hHhccCCEEEEechhhccchHHHHHHHHHHHHHHc--CCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHH
Confidence 34567999999752111222234556667666666 78999999732111 111 01 1122345689999999999
Q ss_pred hhcCCC-hHHHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCC-CCCCCCCChhHHHHhhh
Q psy9483 125 NLLSGS-EVNAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEG-NSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 125 rL~~~~-~~~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g-~~~la~~GsGDvLaGii 184 (186)
.|++.+ ..+.++ +.+.....+|+=.|..- +++++++.+....- ....-+.|.||++.|-+
T Consensus 194 ~l~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~ 257 (295)
T cd01167 194 LLFGEEDPEEIAALLLLFGLKLVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGL 257 (295)
T ss_pred HHhCCCCHHHHHHHHhhcCCCEEEEecCCcceEEEECCcceeeCCCCcceeeCCCccHHHHHHH
Confidence 999973 333455 54433224444445543 44555554444322 23335899999987654
No 47
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=97.48 E-value=0.0025 Score=54.13 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=71.7
Q ss_pred HHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcC
Q psy9483 49 MYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLS 128 (186)
Q Consensus 49 ~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~ 128 (186)
.+.++.+|.+++.-=+.... ..+.+..+++.+++. ++++++|+..... .+++.....+.++.||..|+..|++
T Consensus 121 ~~~~~~~~~v~~~g~~~~~~-~~~~~~~~~~~a~~~--g~~v~~D~~~~~~----~~~~~~~~~~dii~~n~~E~~~l~g 193 (309)
T PRK13508 121 KQLLESVEVVAISGSLPAGL-PVDYYAQLIELANQA--GKPVVLDCSGAAL----QAVLESPYKPTVIKPNIEELSQLLG 193 (309)
T ss_pred HHhccCCCEEEEeCCCCCCc-CHHHHHHHHHHHHHC--CCEEEEECCcHHH----HHHHhccCCceEEccCHHHHHHHhC
Confidence 44567899998852121111 113344555555556 8899999864321 1222223457999999999999998
Q ss_pred C---ChHH----HHH-HHHhCCCEEEEEeCCeeE-EEcCCeEEEEcCCC-CCCCCCChhHHHHhh
Q psy9483 129 G---SEVN----AAY-IKQGHPNLTVIVKGHEDV-IKNNQISLTCKEGN-SWRRCGGQGDLVAGH 183 (186)
Q Consensus 129 ~---~~~~----~a~-~a~~~~~~~vvlKG~~~~-I~~~~~~~~~~~g~-~~la~~GsGDvLaGi 183 (186)
. ++.+ .++ +.++....+|+=.|..-. +.++++.+....-. .---+.|.||.+.|-
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag 258 (309)
T PRK13508 194 KEVSEDLDELKEVLQQPLFEGIEWIIVSLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAG 258 (309)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHH
Confidence 6 2222 222 222221344444555433 34555555444222 223599999997664
No 48
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=97.47 E-value=0.0031 Score=53.63 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=73.3
Q ss_pred HHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcC
Q psy9483 49 MYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLS 128 (186)
Q Consensus 49 ~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~ 128 (186)
.+.++++|.+.+.-=+.. ....+.+.++++.+++. +.++++|+..-.+ .+.+ ...+.+++||..|+..|++
T Consensus 126 ~~~l~~~d~v~~~g~~~~-~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~----~~~~--~~~~~~l~~n~~E~~~l~g 196 (312)
T PRK09513 126 LSWLGQFDMVAVSGSLPR-GVSPEAFTDWMTRLRSQ--CPCIIFDSSREAL----VAGL--KAAPWLVKPNRRELEIWAG 196 (312)
T ss_pred HhhcCCCCEEEEECCCCC-CCCHHHHHHHHHHHHhc--CCEEEEECChHHH----HHHh--ccCCeEEcCCHHHHHHHhC
Confidence 345678999866521222 21234455666666555 7889999974211 0111 1346899999999999998
Q ss_pred C--C---hH-HHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEc-CCCCCCCCCChhHHHHhhh
Q psy9483 129 G--S---EV-NAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCK-EGNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 129 ~--~---~~-~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~-~g~~~la~~GsGDvLaGii 184 (186)
. + +. +.++ +.+.....+|+-.|..- +++.+++.+... .-.+..-+.|.||.+.|.+
T Consensus 197 ~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~ 261 (312)
T PRK09513 197 RKLPELKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGL 261 (312)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHH
Confidence 6 2 22 2445 55443235556566653 444544433333 2233346899999987654
No 49
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=97.44 E-value=0.002 Score=53.81 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=71.6
Q ss_pred HhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcc-cccccCCCeEecCCHHHHhhhcC
Q psy9483 50 YWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPG-LIQDYRGPVYLTPNKREYENLLS 128 (186)
Q Consensus 50 ~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~-l~~~~~~~~iiTPh~~E~~rL~~ 128 (186)
+.+++++.+.+++ +. .+.. .++++.+++ ..++++|+..+.. ....+ +.+..+...+++||..|+..|++
T Consensus 110 ~~~~~~~~v~~~~-~~--~~~~---~~~~~~~~~---~~~v~~D~~~~~~-~~~~~~~~~~l~~~d~~~~n~~E~~~l~g 179 (277)
T cd01946 110 EHYKDSEFVFLGN-IA--PELQ---REVLEQVKD---PKLVVMDTMNFWI-SIKPEKLKKVLAKVDVVIINDGEARQLTG 179 (277)
T ss_pred HHhhcCCEEEECC-CC--HHHH---HHHHHHHHh---CCEEEEccHHHhh-hhhHHHHHHHhccCCEEeCCHHHHHHHhC
Confidence 3457799999974 43 3322 333443332 3679999843211 00111 11223456899999999999999
Q ss_pred CChH-HHHH-HHHhCCCEEEEEe-CCe-eEEEcCCeEEEEcCCCC--CCCCCChhHHHHhhh
Q psy9483 129 GSEV-NAAY-IKQGHPNLTVIVK-GHE-DVIKNNQISLTCKEGNS--WRRCGGQGDLVAGHR 184 (186)
Q Consensus 129 ~~~~-~~a~-~a~~~~~~~vvlK-G~~-~~I~~~~~~~~~~~g~~--~la~~GsGDvLaGii 184 (186)
.++. +.++ +.+... ..|++| |.. .+++++++.+....-.. ..-+.|+||.+++-+
T Consensus 180 ~~~~~~~~~~l~~~g~-~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agf 240 (277)
T cd01946 180 AANLVKAARLILAMGP-KALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGF 240 (277)
T ss_pred CchHHHHHHHHHHcCC-CEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHH
Confidence 7433 3555 655553 345554 333 34556665555543332 236899999987643
No 50
>PRK11142 ribokinase; Provisional
Probab=97.43 E-value=0.004 Score=52.46 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=73.6
Q ss_pred HHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhc
Q psy9483 48 IMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL 127 (186)
Q Consensus 48 ~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~ 127 (186)
..+.++.++.+++-... .. +.+..+++.+++. +.|+++|++....+ ..++ .+.+.+++||..|+..|+
T Consensus 126 ~~~~l~~~~~v~~~~~~--~~---~~~~~~~~~a~~~--g~~v~~d~~~~~~~--~~~~---~~~~dil~~n~~Ea~~l~ 193 (306)
T PRK11142 126 HRELIANADALLMQLET--PL---ETVLAAAKIAKQH--GTKVILNPAPAREL--PDEL---LALVDIITPNETEAEKLT 193 (306)
T ss_pred HHhhhccCCEEEEeCCC--CH---HHHHHHHHHHHHc--CCEEEEECCCCccc--CHHH---HhhCCEEcCCHHHHHHHh
Confidence 34556789999886432 22 2344555555556 78999998643211 1122 235689999999999999
Q ss_pred CC--C---hH-HHHH-HHHhCCCEEEEEeCCeeE-EEcCCeEEEEcCCC-CCCCCCChhHHHHhhh
Q psy9483 128 SG--S---EV-NAAY-IKQGHPNLTVIVKGHEDV-IKNNQISLTCKEGN-SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 128 ~~--~---~~-~~a~-~a~~~~~~~vvlKG~~~~-I~~~~~~~~~~~g~-~~la~~GsGDvLaGii 184 (186)
+. . +. +.++ +.+.....+|+=.|+.-. ++++++.+....-. ...-+.|.||.+.+-+
T Consensus 194 g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agf 259 (306)
T PRK11142 194 GIRVEDDDDAAKAAQVLHQKGIETVLITLGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGAL 259 (306)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCeEEEEECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHH
Confidence 86 1 12 2445 544332355665666544 34455544443222 2235899999987643
No 51
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=97.42 E-value=0.003 Score=53.10 Aligned_cols=125 Identities=16% Similarity=0.228 Sum_probs=71.4
Q ss_pred HhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC
Q psy9483 50 YWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG 129 (186)
Q Consensus 50 ~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~ 129 (186)
+.++.++.+++.-=+... ...+.+..+++.+++. ++++++|+..-.+. +.+. ..+.|++||..|++.|++.
T Consensus 123 ~~l~~~~~v~~~g~~~~~-~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~~----~~~~--~~~~i~~~n~~E~~~l~g~ 193 (304)
T TIGR03828 123 AQLAEGDWLVLSGSLPPG-VPPDFYAELIALAREK--GAKVILDTSGEALR----DGLK--AKPFLIKPNDEELEELFGR 193 (304)
T ss_pred HhccCCCEEEEECCCCCC-CCHHHHHHHHHHHHHc--CCEEEEECChHHHH----HHHh--cCCcEECcCHHHHHHHhCC
Confidence 356789998884212111 0113344555555556 78999998643211 1111 2357999999999999986
Q ss_pred --C---hH-HHHH-HHHhCCCEEEEEe-CCee-EEEcCCeEEEEcCC-CCCCCCCChhHHHHhhh
Q psy9483 130 --S---EV-NAAY-IKQGHPNLTVIVK-GHED-VIKNNQISLTCKEG-NSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 130 --~---~~-~~a~-~a~~~~~~~vvlK-G~~~-~I~~~~~~~~~~~g-~~~la~~GsGDvLaGii 184 (186)
+ +. +.++ +.+... ..||+| |..- +++++++.+....- .+---+.|.||.++|.+
T Consensus 194 ~~~~~~~~~~~~~~l~~~g~-~~vvvT~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~ 257 (304)
T TIGR03828 194 ELKTLEEIIEAARELLDLGA-ENVLISLGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGF 257 (304)
T ss_pred CCCCHHHHHHHHHHHHHcCC-CEEEEccCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHH
Confidence 1 22 2445 555442 355555 5543 44455544444321 12235899999988764
No 52
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=97.37 E-value=0.002 Score=54.65 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=76.3
Q ss_pred hcccCcEEEEccCCC-CCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccc-cCcccccccCCCeEecCCHHHHhhhcC
Q psy9483 51 WMNRMHSVLIGPGLG-TEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVA-EHPGLIQDYRGPVYLTPNKREYENLLS 128 (186)
Q Consensus 51 ~~~~~~aivIGpGlg-~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~-~~~~l~~~~~~~~iiTPh~~E~~rL~~ 128 (186)
.++++|.+.+..=.. ..+ +.+..+++.+++. +.++++|+..-.... .+..+....+...+++||..|++.|++
T Consensus 142 ~l~~~~~v~~~~~~~~~~~---~~~~~~~~~a~~~--g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~ 216 (312)
T cd01168 142 LLAKAKYLYLEGYLLTVPP---EAILLAAEHAKEN--GVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAE 216 (312)
T ss_pred HHccCCEEEEEEEecCCCH---HHHHHHHHHHHHc--CCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhC
Confidence 457789998865221 122 4455556655556 789999996421100 011111223456899999999999998
Q ss_pred C---ChHHHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCCC--CCCCCCChhHHHHhhh
Q psy9483 129 G---SEVNAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEGN--SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 129 ~---~~~~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g~--~~la~~GsGDvLaGii 184 (186)
. +..+.++ +.++....+|+-.|..- +++++++.+....-. .-.-+.|.||.+.|-+
T Consensus 217 ~~~~~~~~~a~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~ 279 (312)
T cd01168 217 AETTDDLEAALKLLALRCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGF 279 (312)
T ss_pred CCCCChHHHHHHHHhcCCCEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHH
Confidence 4 3334566 66655334555555543 344556555554332 2346999999987653
No 53
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=97.35 E-value=0.0063 Score=51.71 Aligned_cols=125 Identities=16% Similarity=0.235 Sum_probs=72.8
Q ss_pred cccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC--
Q psy9483 52 MNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG-- 129 (186)
Q Consensus 52 ~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~-- 129 (186)
+++++.+++...+... ...+.+.++++.+++. +.++++|+..-.. . +.+ ..+.+.+++||..|+..|++.
T Consensus 128 ~~~~~~~~i~g~~~~~-~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~-~---~~~-~~~~~~~i~~n~~E~~~l~g~~~ 199 (309)
T PRK10294 128 IESGAILVISGSLPPG-VKLEKLTQLISAAQKQ--GIRCIIDSSGDAL-S---AAL-AIGNIELVKPNQKELSALVNRDL 199 (309)
T ss_pred cCCCCEEEEeCCCCCC-CCHHHHHHHHHHHHHc--CCeEEEeCCCHHH-H---HHH-hcCCCeEECCCHHHHHHHhCCCC
Confidence 4678888886544422 2234555666666666 7899999964321 0 111 123568999999999999986
Q ss_pred C---hH-HHHH-HHHhC-CCEEEEEeCCeeE-EEcCCeEEEEcCC-CCCCCCCChhHHHHhhh
Q psy9483 130 S---EV-NAAY-IKQGH-PNLTVIVKGHEDV-IKNNQISLTCKEG-NSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 130 ~---~~-~~a~-~a~~~-~~~~vvlKG~~~~-I~~~~~~~~~~~g-~~~la~~GsGDvLaGii 184 (186)
. ++ ++++ +.++. ...+||-.|..-. ++++++.+..... -..--+.|.||.+.|.+
T Consensus 200 ~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~ 262 (309)
T PRK10294 200 TQPDDVRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAM 262 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHH
Confidence 2 12 2445 54433 1344454555444 4454444333322 22235999999987653
No 54
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=97.30 E-value=0.0063 Score=50.95 Aligned_cols=129 Identities=16% Similarity=0.106 Sum_probs=74.3
Q ss_pred HHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHh
Q psy9483 45 VDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYE 124 (186)
Q Consensus 45 ~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~ 124 (186)
++++.+.++.+|.+++.... .. +.+..+++.+++. +.++++|+....- ....++ .+...+++||..|+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~--~~~v~~D~~~~~~-~~~~~~---~~~~d~l~~n~~E~~ 183 (293)
T TIGR02152 115 IDAAEALIAESDIVLLQLEI--PL---ETVLEAAKIAKKH--GVKVILNPAPAIK-DLDDEL---LSLVDIITPNETEAE 183 (293)
T ss_pred HHHHHhhhccCCEEEEecCC--CH---HHHHHHHHHHHHc--CCEEEEECCcCcc-cchHHH---HhcCCEEccCHHHHH
Confidence 34444456789999987432 22 2344555555556 7899999864310 001122 245689999999999
Q ss_pred hhcCCC-----hHH-HHH-HHHhCCCEEEEEeCCeeE-EEcCCeEEEEcCCC-CCCCCCChhHHHHhhh
Q psy9483 125 NLLSGS-----EVN-AAY-IKQGHPNLTVIVKGHEDV-IKNNQISLTCKEGN-SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 125 rL~~~~-----~~~-~a~-~a~~~~~~~vvlKG~~~~-I~~~~~~~~~~~g~-~~la~~GsGDvLaGii 184 (186)
.|++.+ +.+ .++ +.+.....+|+-.|+.-. +++++..+....-. ...-+.|+||.+.+-+
T Consensus 184 ~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~ 252 (293)
T TIGR02152 184 ILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAF 252 (293)
T ss_pred HHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHH
Confidence 999862 222 455 554322234555555443 44555554443221 2235899999977643
No 55
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=97.28 E-value=0.0065 Score=51.62 Aligned_cols=129 Identities=19% Similarity=0.234 Sum_probs=72.6
Q ss_pred HHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcC
Q psy9483 49 MYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLS 128 (186)
Q Consensus 49 ~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~ 128 (186)
.+.++.+|.+.+.--+.... ....+..+++.+++. +.++++|+....+ ..++.....+.+++||..|+.+|++
T Consensus 121 ~~~~~~~~~v~~~g~~~~~~-~~~~~~~~~~~a~~~--g~~v~~D~~~~~~----~~~~~~~~~~dil~~n~~E~~~l~g 193 (309)
T TIGR01231 121 EQLLEKVEVVAISGSLPKGL-PQDYYAQIIERCQNK--GVPVVLDCSGATL----QTVLENPAKPTVIKPNIEELSQLLN 193 (309)
T ss_pred HHHhccCCEEEEECCCCCCc-CHHHHHHHHHHHHhC--CCeEEEECChHHH----HHHHhccCCCeEEcCCHHHHHHHhC
Confidence 34467899988854222111 123445566666666 7899999875421 1122223456899999999999998
Q ss_pred C---ChHH----HHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcC-CCCCCCCCChhHHHHhhh
Q psy9483 129 G---SEVN----AAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKE-GNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 129 ~---~~~~----~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~-g~~~la~~GsGDvLaGii 184 (186)
. ++.+ .++ +.+.....+++=-|..- +.+++++.+.... ..+-.-+.|.||.+.|-+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agf 259 (309)
T TIGR01231 194 QELTEDLESLKQALSQPLFSGIEWIIVSLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGI 259 (309)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHH
Confidence 5 2322 222 22222134444445543 3444555444332 223346999999987653
No 56
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=97.23 E-value=0.0035 Score=57.09 Aligned_cols=133 Identities=13% Similarity=0.047 Sum_probs=75.8
Q ss_pred HHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccc-ccc-cC----cccccccCCCeEecCCHHH
Q psy9483 49 MYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLK-LVA-EH----PGLIQDYRGPVYLTPNKRE 122 (186)
Q Consensus 49 ~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~-~l~-~~----~~l~~~~~~~~iiTPh~~E 122 (186)
.+.++.+|.+.+.- ....+...+.+..+++.+++. +.++++|+.-.. .+. .. ..+....+...++.||..|
T Consensus 219 ~~~l~~adiv~lsg-~~~~~~~~~~~~~~~~~Ak~~--g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~E 295 (470)
T PLN02341 219 KMAIRQSKALFCNG-YVFDELSPSAIASAVDYAIDV--GTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEE 295 (470)
T ss_pred HhhhhcCCEEEEec-eeCCcCCHHHHHHHHHHHHHc--CCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHH
Confidence 34567899988763 211111123455666666666 889999996431 111 00 0111222346899999999
Q ss_pred HhhhcCCC-hHHHHH-HHHhC--CCEEEEEeCCe-eEEEcCCeEEEEcCCC-CCCCCCChhHHHHhhh
Q psy9483 123 YENLLSGS-EVNAAY-IKQGH--PNLTVIVKGHE-DVIKNNQISLTCKEGN-SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 123 ~~rL~~~~-~~~~a~-~a~~~--~~~~vvlKG~~-~~I~~~~~~~~~~~g~-~~la~~GsGDvLaGii 184 (186)
+..|++.+ ..+.++ +.++. ...+||=.|.. .++++++..+....-. ...-+.|.||.+.|-+
T Consensus 296 a~~l~g~~~~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agf 363 (470)
T PLN02341 296 AEALTGIRNPILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAI 363 (470)
T ss_pred HHHHhCCCCHHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHH
Confidence 99999973 334555 55432 11344444554 3455555555444322 2236999999987754
No 57
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=97.15 E-value=0.0072 Score=53.27 Aligned_cols=127 Identities=17% Similarity=0.128 Sum_probs=79.8
Q ss_pred HhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccccc-Cccccccc--CCCeEecCCHHHHhhh
Q psy9483 50 YWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAE-HPGLIQDY--RGPVYLTPNKREYENL 126 (186)
Q Consensus 50 ~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~-~~~l~~~~--~~~~iiTPh~~E~~rL 126 (186)
+.++.++.+.+. ...... +.+.++++.+++. ++++++|......... ++.+.+.. ....++.||..|+..|
T Consensus 173 ~~~~~~~~v~v~-~~~~~~---~~~~~~~~~A~~~--g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l 246 (367)
T PLN02379 173 EDFKGSKWLVLR-YGFYNL---EVIEAAIRLAKQE--GLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEAREL 246 (367)
T ss_pred HHHhcCCEEEEE-cccCCH---HHHHHHHHHHHHc--CCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHH
Confidence 346789999999 332333 3444566666666 8999999977543322 22222222 2468999999999999
Q ss_pred cCC---ChHH-HHH-HHHhCCCEEEEEeCCe-eEEEcCCeEEEEcCCCC--CCCCCChhHHHHhh
Q psy9483 127 LSG---SEVN-AAY-IKQGHPNLTVIVKGHE-DVIKNNQISLTCKEGNS--WRRCGGQGDLVAGH 183 (186)
Q Consensus 127 ~~~---~~~~-~a~-~a~~~~~~~vvlKG~~-~~I~~~~~~~~~~~g~~--~la~~GsGDvLaGi 183 (186)
++. ++.+ ..+ +.+.. ..+|+=.|.. .+++++++.+....-.+ -.-+.|.||.++|-
T Consensus 247 ~~~~~~~~~~~~~~~l~~~~-~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaag 310 (367)
T PLN02379 247 LRGEQESDPEAALEFLAKYC-NWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASG 310 (367)
T ss_pred hcCCCCCCHHHHHHHHHhcC-CEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHH
Confidence 964 3333 444 55544 4566666764 45566666665554322 24699999998764
No 58
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=97.04 E-value=0.02 Score=47.69 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=72.4
Q ss_pred HHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhc
Q psy9483 48 IMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL 127 (186)
Q Consensus 48 ~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~ 127 (186)
+.+.++.+|.+++..-+ ..+ .+..+++.+++. +.++++|+.....+ .+++...+...+|+||..|+..++
T Consensus 122 ~~~~l~~~~~v~~~~~~--~~~---~~~~~~~~a~~~--~~~v~~d~~~~~~~---~~~~~~~~~~dii~~n~~E~~~~~ 191 (288)
T cd01941 122 IREALKEAKPIVVDANL--PEE---ALEYLLALAAKH--GVPVAFEPTSAPKL---KKLFYLLHAIDLLTPNRAELEALA 191 (288)
T ss_pred HHHHHhcCCEEEEeCCC--CHH---HHHHHHHhhhhc--CCcEEEEccchHHh---ccchhhcccceEEeCCHHHHHHHh
Confidence 44557789999874322 222 344555555555 78999998533211 111122345799999999999999
Q ss_pred CCC--h---H-HHHH-HHHhCCCEEEEEeCCee-EEEcC---CeEEEEcC--CCCCCCCCChhHHHHhhh
Q psy9483 128 SGS--E---V-NAAY-IKQGHPNLTVIVKGHED-VIKNN---QISLTCKE--GNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 128 ~~~--~---~-~~a~-~a~~~~~~~vvlKG~~~-~I~~~---~~~~~~~~--g~~~la~~GsGDvLaGii 184 (186)
+.+ + . +.++ +.+.....+|+-.|..- +++++ +..+.... -.+.--+.|.||.+.|.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~ 261 (288)
T cd01941 192 GALIENNEDENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGL 261 (288)
T ss_pred CcccCCchhHHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHH
Confidence 861 1 1 2334 33322134555566653 44454 34454443 222335999999987654
No 59
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=97.01 E-value=0.011 Score=49.45 Aligned_cols=130 Identities=15% Similarity=0.023 Sum_probs=71.5
Q ss_pred cccCcEEEEccCCC-CCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC-
Q psy9483 52 MNRMHSVLIGPGLG-TEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG- 129 (186)
Q Consensus 52 ~~~~~aivIGpGlg-~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~- 129 (186)
+.++|.+.++-... ..+.....+.++++.. +. +.++++|+......-....+.+..+...++.||..|+..|++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~ 199 (289)
T cd01944 123 VAPYDYVYLSGYTLASENASKVILLEWLEAL-PA--GTTLVFDPGPRISDIPDTILQALMAKRPIWSCNREEAAIFAERG 199 (289)
T ss_pred CCCCCEEEEeCccccCcchhHHHHHHHHHhc-cC--CCEEEEcCcccccccCHHHHHHHHhcCCEEccCHHHHHHHhCCC
Confidence 45788888865422 1221334455555443 23 6789999963321111111111224568999999999999997
Q ss_pred C--hHHHHH-HHHhCCCEEEEEeCCe-eEEEc-CCeEEEEc-CCCCCCCCCChhHHHHhhh
Q psy9483 130 S--EVNAAY-IKQGHPNLTVIVKGHE-DVIKN-NQISLTCK-EGNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 130 ~--~~~~a~-~a~~~~~~~vvlKG~~-~~I~~-~~~~~~~~-~g~~~la~~GsGDvLaGii 184 (186)
+ +...++ +.++....+|+-.|.. .++.+ ++..+... ...+-.-+.|.||.+.|-+
T Consensus 200 ~~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~ 260 (289)
T cd01944 200 DPAAEASALRIYAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGM 260 (289)
T ss_pred CcchHHHHHHHHhccCCeEEEEECCCcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHH
Confidence 2 112344 5554432445555654 34445 34444443 2223346899999987643
No 60
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=96.98 E-value=0.022 Score=47.37 Aligned_cols=122 Identities=12% Similarity=0.073 Sum_probs=72.4
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCCC
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSGS 130 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~~ 130 (186)
.++++|.+++++-.. + ...++++.+++. +.|+++|.|.-.. .++....+...+++||..|+..|++.+
T Consensus 123 ~~~~~~~v~i~~~~~--~----~~~~~~~~~~~~--g~~v~~~~~~~~~----~~~~~~~~~~dil~~n~~e~~~l~~~~ 190 (284)
T cd01945 123 ILGGADAVLVDGRQP--E----AALHLAQEARAR--GIPIPLDLDGGGL----RVLEELLPLADHAICSENFLRPNTGSA 190 (284)
T ss_pred HhCcCCEEEEcCCCH--H----HHHHHHHHHHHc--CCCeeEeccCCcc----cchHHHhccCCEEEeChhHHhhhcCCC
Confidence 367899999987431 2 233455555556 7888888764321 111112234589999999999999873
Q ss_pred hHHHHH-HHHhCCCEEEEEeCCee-EEEc-CCeEEEEcCC-CCCCCCCChhHHHHhhh
Q psy9483 131 EVNAAY-IKQGHPNLTVIVKGHED-VIKN-NQISLTCKEG-NSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 131 ~~~~a~-~a~~~~~~~vvlKG~~~-~I~~-~~~~~~~~~g-~~~la~~GsGDvLaGii 184 (186)
+.+.++ +.+...+.+||=.|..- ++++ +++.+....- ..-.-+.|.||.+.+.+
T Consensus 191 ~~~~~~~l~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~ 248 (284)
T cd01945 191 DDEALELLASLGIPFVAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAF 248 (284)
T ss_pred HHHHHHHHHhcCCcEEEEEECCCCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHH
Confidence 325555 44433235555556653 4455 4555544432 22235899999987653
No 61
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=96.95 E-value=0.014 Score=49.33 Aligned_cols=131 Identities=14% Similarity=0.095 Sum_probs=76.9
Q ss_pred cccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccC----cccc-cccCCCeEecCCHHHHhhh
Q psy9483 52 MNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEH----PGLI-QDYRGPVYLTPNKREYENL 126 (186)
Q Consensus 52 ~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~----~~l~-~~~~~~~iiTPh~~E~~rL 126 (186)
+++++.+.++.-....+.....+.++++.+++. ++++++|+.--..+-.. ++.+ +..+...++.||..|+..|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l 194 (304)
T PRK09434 117 FRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAA--GGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFL 194 (304)
T ss_pred hcCCCEEEEccccccCchHHHHHHHHHHHHHHc--CCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHH
Confidence 456888888653333333334444566666666 78999999743211111 1111 1124568999999999999
Q ss_pred cCCChH-HHHH-HHHhCC-CEEEEEeCCee-EEEcCCeEEEEcC-CCCCCCCCChhHHHHhhh
Q psy9483 127 LSGSEV-NAAY-IKQGHP-NLTVIVKGHED-VIKNNQISLTCKE-GNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 127 ~~~~~~-~~a~-~a~~~~-~~~vvlKG~~~-~I~~~~~~~~~~~-g~~~la~~GsGDvLaGii 184 (186)
++.++. +.++ +.++++ ..+|+=.|..- +++++++.+.... --+..-+.|.||.+.|-+
T Consensus 195 ~g~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~ 257 (304)
T PRK09434 195 SGTSQLEDAIYALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGL 257 (304)
T ss_pred hCCCCHHHHHHHHHhhcCCcEEEEEecCCceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHH
Confidence 997433 4666 766442 24555566654 4455555554442 122235899999987643
No 62
>PRK09850 pseudouridine kinase; Provisional
Probab=96.90 E-value=0.025 Score=48.11 Aligned_cols=125 Identities=20% Similarity=0.154 Sum_probs=68.9
Q ss_pred HHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhc
Q psy9483 48 IMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL 127 (186)
Q Consensus 48 ~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~ 127 (186)
..+.++.++.+++..++ ..+. +..+++.. . ++++++|+...... ..+....+...+++||..|+..|+
T Consensus 128 ~~~~~~~~~~v~~~~~~--~~~~---~~~~~~~~--~--g~~v~~D~~~~~~~---~~~~~~l~~~dil~~N~~Ea~~l~ 195 (313)
T PRK09850 128 HREFIQRAKVIVADCNI--SEEA---LAWILDNA--A--NVPVFVDPVSAWKC---VKVRDRLNQIHTLKPNRLEAETLS 195 (313)
T ss_pred HHHHHhcCCEEEEeCCC--CHHH---HHHHHHhc--c--CCCEEEEcCCHHHH---HHHHhhhccceEEccCHHHHHHHh
Confidence 34456789998886543 2222 23333321 3 67999998743210 111112345689999999999999
Q ss_pred CC--C---hHH-HHH-HHHhCCCEEEEEeCCeeE-EEcC-CeEEEEcC-CCCCCCCCChhHHHHhhh
Q psy9483 128 SG--S---EVN-AAY-IKQGHPNLTVIVKGHEDV-IKNN-QISLTCKE-GNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 128 ~~--~---~~~-~a~-~a~~~~~~~vvlKG~~~~-I~~~-~~~~~~~~-g~~~la~~GsGDvLaGii 184 (186)
+. + +.+ .++ +.+.....+||=.|..-. +++. +..++... -...--+.|.||.+.|-+
T Consensus 196 g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agf 262 (313)
T PRK09850 196 GIALSGREDVAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGL 262 (313)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHH
Confidence 85 1 222 455 544332245554676544 3442 33222221 112235899999987643
No 63
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=96.87 E-value=0.015 Score=52.43 Aligned_cols=131 Identities=11% Similarity=0.035 Sum_probs=79.8
Q ss_pred HhcccCcEEEEc-cCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccccc-Ccccccc-cCCCeEecCCHHHHhhh
Q psy9483 50 YWMNRMHSVLIG-PGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAE-HPGLIQD-YRGPVYLTPNKREYENL 126 (186)
Q Consensus 50 ~~~~~~~aivIG-pGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~-~~~l~~~-~~~~~iiTPh~~E~~rL 126 (186)
+.++.+|.+++. .-+.. ++..+.+.++++.+++. +.++++|+........ +++++.. .+...++.||..|+..|
T Consensus 220 ~~i~~adiv~l~g~~~~~-~~~~~~~~~~~~~ak~~--g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l 296 (426)
T PLN02813 220 SAISKSRVLVVEGYLWEL-PQTIEAIAQACEEAHRA--GALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARAL 296 (426)
T ss_pred HHHhcCCEEEEEeeecCC-CchHHHHHHHHHHHHHc--CCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHH
Confidence 346789999994 21111 22345566677766666 7899999876543321 1222222 24568999999999999
Q ss_pred cCC---ChH-HHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCC-CCCCCCCChhHHHHhhh
Q psy9483 127 LSG---SEV-NAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEG-NSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 127 ~~~---~~~-~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g-~~~la~~GsGDvLaGii 184 (186)
++. ++. ++++ +.+.. ..+||=.|..- +++++++.+....- ....-+.|.||.++|-+
T Consensus 297 ~g~~~~~~~~~a~~~L~~~~-~~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agf 360 (426)
T PLN02813 297 CGLGSEESPESATRYLSHFC-PLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGI 360 (426)
T ss_pred hCCCCCCCHHHHHHHHHcCC-CEEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHH
Confidence 986 223 3556 65444 35555556644 45566665555432 22235999999988754
No 64
>PTZ00292 ribokinase; Provisional
Probab=96.86 E-value=0.025 Score=48.36 Aligned_cols=127 Identities=12% Similarity=0.069 Sum_probs=68.0
Q ss_pred Hhccc-CcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcC
Q psy9483 50 YWMNR-MHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLS 128 (186)
Q Consensus 50 ~~~~~-~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~ 128 (186)
+.+.+ ++.+++...+ .. +...++++.+++. ++++++|+.........+.+....+...++.||..|+..|++
T Consensus 142 ~~i~~~~~~~~~~~~~--~~---~~~~~~~~~a~~~--g~~v~~D~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~g 214 (326)
T PTZ00292 142 DNIQNICKYLICQNEI--PL---ETTLDALKEAKER--GCYTVFNPAPAPKLAEVEIIKPFLKYVSLFCVNEVEAALITG 214 (326)
T ss_pred HHhhhhCCEEEECCCC--CH---HHHHHHHHHHHHc--CCEEEEECCCCccccccccHHHHHhcCCEEcCCHHHHHHHhC
Confidence 34556 7888775432 22 2223444445555 789999996432111111111122356899999999999998
Q ss_pred C--Ch---H-HHHH-HHHhCCCEEEEEeCCeeE-EEcCC-eEEEEcC-CCCCCCCCChhHHHHhh
Q psy9483 129 G--SE---V-NAAY-IKQGHPNLTVIVKGHEDV-IKNNQ-ISLTCKE-GNSWRRCGGQGDLVAGH 183 (186)
Q Consensus 129 ~--~~---~-~~a~-~a~~~~~~~vvlKG~~~~-I~~~~-~~~~~~~-g~~~la~~GsGDvLaGi 183 (186)
. .. . +.++ +.+.....+|+=-|..-. +++++ ..+.... .....-+.|.||.+.|-
T Consensus 215 ~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag 279 (326)
T PTZ00292 215 MEVTDTESAFKASKELQQLGVENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGS 279 (326)
T ss_pred CCCCChhHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHH
Confidence 6 11 2 2444 433321244444565543 44443 3343332 22234699999998664
No 65
>PLN02323 probable fructokinase
Probab=96.60 E-value=0.031 Score=47.89 Aligned_cols=129 Identities=13% Similarity=0.083 Sum_probs=70.0
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccC----cc-cccccCCCeEecCCHHHHhh
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEH----PG-LIQDYRGPVYLTPNKREYEN 125 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~----~~-l~~~~~~~~iiTPh~~E~~r 125 (186)
.++.++.+.++.-....+.....+..+++.+++. +.++++|+.-...+..+ .+ +....+.+.++.||..|+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~ 210 (330)
T PLN02323 133 LIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEA--GALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEF 210 (330)
T ss_pred HHccCCEEEEechhccCchHHHHHHHHHHHHHHc--CCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHH
Confidence 4567887766653322232333344566666666 78999999532111000 01 11122356899999999999
Q ss_pred hcCCC---hHHHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCC-CCCCCCCChhHHHHh
Q psy9483 126 LLSGS---EVNAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEG-NSWRRCGGQGDLVAG 182 (186)
Q Consensus 126 L~~~~---~~~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g-~~~la~~GsGDvLaG 182 (186)
|++.. +.+..+ +.... ..+|+=.|..- ++++++..+....- ..-.-+.|.||.+.|
T Consensus 211 l~g~~~~~~~~~~~~~~~g~-~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~A 272 (330)
T PLN02323 211 LTGGDDPDDDTVVKLWHPNL-KLLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVG 272 (330)
T ss_pred HhCCCCccHHHHHHHHhcCC-CEEEEecCCCceEEEeCCCceEeCCccCCCCCCCCcHHHHHH
Confidence 99862 222334 33223 24444456543 34455544333321 223469999999765
No 66
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=96.39 E-value=0.036 Score=45.90 Aligned_cols=121 Identities=15% Similarity=0.094 Sum_probs=67.4
Q ss_pred HhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHH---hhh
Q psy9483 50 YWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREY---ENL 126 (186)
Q Consensus 50 ~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~---~rL 126 (186)
+.++.++.+.+..- . .+.++++.+++. ++|+++|+.........+.+....+...+++||..|+ ..+
T Consensus 122 ~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~--g~~v~~D~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~ 191 (279)
T cd01942 122 DPDGLADIVHLSSG-P-------GLIELARELAAG--GITVSFDPGQELPRLSGEELEEILERADILFVNDYEAELLKER 191 (279)
T ss_pred hhhcccCEEEeCCc-h-------HHHHHHHHHHHc--CCeEEEcchhhhhhccHHHHHHHHhhCCEEecCHHHHHHHHhh
Confidence 34567888887642 1 133444455555 7899999976422111111222234568999999999 455
Q ss_pred cCCChHHHHHHHHhCCCEEEEEeCCee-EEEcCCeEEEEcCC--CCCCCCCChhHHHHhhh
Q psy9483 127 LSGSEVNAAYIKQGHPNLTVIVKGHED-VIKNNQISLTCKEG--NSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 127 ~~~~~~~~a~~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g--~~~la~~GsGDvLaGii 184 (186)
.+..+.. .+... ..+|+-.|..- +++++++.+....- -...-+.|.||.++|-+
T Consensus 192 ~~~~~~~---~~~~~-~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~ 248 (279)
T cd01942 192 TGLSEAE---LASGV-RVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGF 248 (279)
T ss_pred cCCChHH---HhcCC-CEEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHH
Confidence 5542111 12223 35555566654 34455555554421 11235999999987754
No 67
>PRK09954 putative kinase; Provisional
Probab=96.26 E-value=0.089 Score=45.85 Aligned_cols=126 Identities=13% Similarity=0.032 Sum_probs=70.1
Q ss_pred HHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhh
Q psy9483 47 HIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENL 126 (186)
Q Consensus 47 ~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL 126 (186)
+..+.+..++.+++...+. .+. +..+++.+ . +.|+++|+...... ..+....+...++.||..|++.|
T Consensus 180 ~~~~~~~~~~~v~~~~~~~--~~~---~~~~~~~a--~--~~~v~~D~~~~~~~---~~~~~~l~~~dil~~n~~Ea~~l 247 (362)
T PRK09954 180 GSRDLIRHAGVVLADCNLT--AEA---LEWVFTLA--D--EIPVFVDTVSEFKA---GKIKHWLAHIHTLKPTQPELEIL 247 (362)
T ss_pred HHHHHHhcCCEEEEECCCC--HHH---HHHHHHhC--C--CCcEEEECCCHHHh---hhhhhhhccccEEecCHHHHHHH
Confidence 3344456789888876543 322 22333322 3 68999998753210 01111234568999999999999
Q ss_pred cCC--C-h--H-HHHH-HHHhCCCEEEEEeCCeeEEE-c-CCeEEEEcC-CCCCCCCCChhHHHHhhh
Q psy9483 127 LSG--S-E--V-NAAY-IKQGHPNLTVIVKGHEDVIK-N-NQISLTCKE-GNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 127 ~~~--~-~--~-~~a~-~a~~~~~~~vvlKG~~~~I~-~-~~~~~~~~~-g~~~la~~GsGDvLaGii 184 (186)
++. + + . ++++ +.+...+.+||=.|..-.++ + +++.+.... ....--+.|.||.+.|-.
T Consensus 248 ~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~ 315 (362)
T PRK09954 248 WGQAITSDADRNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGL 315 (362)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHH
Confidence 986 1 1 2 2445 54443234555556654443 3 333443321 122235999999987643
No 68
>PTZ00247 adenosine kinase; Provisional
Probab=96.18 E-value=0.048 Score=47.19 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=71.8
Q ss_pred hcccCcEEEEccC-CCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccccc-CcccccccCCCeEecCCHHHHhhhcC
Q psy9483 51 WMNRMHSVLIGPG-LGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAE-HPGLIQDYRGPVYLTPNKREYENLLS 128 (186)
Q Consensus 51 ~~~~~~aivIGpG-lg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~-~~~l~~~~~~~~iiTPh~~E~~rL~~ 128 (186)
.++.++.+++.-= +..+. +.+..+++.+++. ++++++|+..-..... ...+....+...++.||..|+..|++
T Consensus 156 ~l~~~~~v~~~g~~~~~~~---~~~~~~~~~a~~~--g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g 230 (345)
T PTZ00247 156 AIKTAQLYYLEGFFLTVSP---NNVLQVAKHARES--GKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAK 230 (345)
T ss_pred HHhhCCEEEEEEEEecccH---HHHHHHHHHHHHc--CCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhh
Confidence 4677898888731 11223 3344555656666 8899999753211100 11111223456899999999999998
Q ss_pred C-----ChH-HHHH-HHHh------CCCEEEEEeCCee-EEEcCCeEEEEcCCCC----CCCCCChhHHHHhhh
Q psy9483 129 G-----SEV-NAAY-IKQG------HPNLTVIVKGHED-VIKNNQISLTCKEGNS----WRRCGGQGDLVAGHR 184 (186)
Q Consensus 129 ~-----~~~-~~a~-~a~~------~~~~~vvlKG~~~-~I~~~~~~~~~~~g~~----~la~~GsGDvLaGii 184 (186)
. ++. +.++ +.+. ....+||=.|+.- +++++++.+....-.. .--+.|.||.+.|-.
T Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agf 304 (345)
T PTZ00247 231 AMKWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGF 304 (345)
T ss_pred ccCCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHH
Confidence 2 223 3444 5432 1123344446543 4556665544432221 346999999987643
No 69
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=95.41 E-value=0.063 Score=44.69 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=71.2
Q ss_pred HHhcccCcEEEEcc-CCCCCHHHHHHHHHHHHHHHhcCCC--CCEEEecccccccccCcccccccCCCeEecCCHHHHhh
Q psy9483 49 MYWMNRMHSVLIGP-GLGTEPLVQSNVISIIHKLKAANLN--VPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYEN 125 (186)
Q Consensus 49 ~~~~~~~~aivIGp-Glg~~~~~~~~~~~~l~~~~~~~~~--~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~r 125 (186)
.+.+..++.+.++. =+... .....+..+.+..++. . .+.+.|+..-. .++.+.+..+.+.++.||..|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~l~~~dil~~n~~E~~~ 195 (301)
T PF00294_consen 122 EEAIDEADILHLSGVSLPEG-IPEDLLEALAKAAKKN--GPFDPVFRDPSWDD---LREDLKELLPYADILKPNEEEAEA 195 (301)
T ss_dssp HHHHHTESEEEEESGHCSTT-SHHHHHHHHHHHHHHT--TEEEEEEEGGGSHH---HHHHHHHHHHTSSEEEEEHHHHHH
T ss_pred ccccccccceeecccccccc-cccceeeecccccccc--cccccccccccccc---cchhhhhhccccchhccccccccc
Confidence 34566799999988 22211 1123333333333333 3 24555554432 111122222467999999999999
Q ss_pred hcCCC--hHH-H---HH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcC--CCCCCCCCChhHHHHhhh
Q psy9483 126 LLSGS--EVN-A---AY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKE--GNSWRRCGGQGDLVAGHR 184 (186)
Q Consensus 126 L~~~~--~~~-~---a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~--g~~~la~~GsGDvLaGii 184 (186)
|++.. ..+ . ++ +..+....+|+=.|..- ++++++..+.... ...-..+.|.||.+.+.+
T Consensus 196 l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~ 264 (301)
T PF00294_consen 196 LTGSKIDDPEDALAALRELQARGVKIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGF 264 (301)
T ss_dssp HHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHH
T ss_pred cccccccchhhhhccccccchhhhhhhhccccccCcccccccccccccccccccccceeccchhhhHHH
Confidence 99983 333 2 22 22233245666667654 4454555444443 344457999999987753
No 70
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=95.38 E-value=0.3 Score=41.21 Aligned_cols=130 Identities=18% Similarity=0.067 Sum_probs=75.0
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCC-
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG- 129 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~- 129 (186)
.+..++.+.++.-...... +.+...++.+++. +.++.+|.+--..+.....+.+..+...++.||..|++.|++.
T Consensus 126 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~a~~~--g~~v~~d~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~ 201 (311)
T COG0524 126 ELAGADVLHISGIQLEIPP--EALLAALELAKAA--GVTVSFDLNPRPALWDRELLEELLALADILFPNEEEAELLTGLE 201 (311)
T ss_pred HHhhcCeeeEEEeecCCCh--HHHHHHHHHHHHc--CCeEEEecCCCccccchhhHHHHHhhCCEEeCCHHHHHHHhCCC
Confidence 4456777777765443322 3444555556566 8899999987765432212222334568999999999999995
Q ss_pred ChH-HHHH-HHHhCCCEEEEEeCCe-eEEEcC-CeEEEEcC-CCC--CCCCCChhHHHHhhh
Q psy9483 130 SEV-NAAY-IKQGHPNLTVIVKGHE-DVIKNN-QISLTCKE-GNS--WRRCGGQGDLVAGHR 184 (186)
Q Consensus 130 ~~~-~~a~-~a~~~~~~~vvlKG~~-~~I~~~-~~~~~~~~-g~~--~la~~GsGDvLaGii 184 (186)
++. ...+ +.......+|+=.|+. .+++++ ++.++... ..+ -.-+.|.||.+.|-.
T Consensus 202 ~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agf 263 (311)
T COG0524 202 EDAEAAAALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGF 263 (311)
T ss_pred ccHHHHHHHHhhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHH
Confidence 322 2333 3333312444444774 455554 32122211 222 235999999988743
No 71
>PRK15074 inosine/guanosine kinase; Provisional
Probab=95.31 E-value=0.17 Score=45.93 Aligned_cols=99 Identities=17% Similarity=0.132 Sum_probs=59.2
Q ss_pred hcccCcEEEEccCCCC---CHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccc-c-ccCCCeEecCCHHHHhh
Q psy9483 51 WMNRMHSVLIGPGLGT---EPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLI-Q-DYRGPVYLTPNKREYEN 125 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~---~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~-~-~~~~~~iiTPh~~E~~r 125 (186)
.++.++.+.+.-=+.. .+...+.+..+++.+++. ++++++|+.....+...++.+ . ..+...||.||..|+..
T Consensus 183 ~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~--G~~VslD~s~~~~v~~~~~~~~e~l~~~vDILf~NeeEa~~ 260 (434)
T PRK15074 183 VIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKH--NVPVVLTLGTKFVIEDNPQWWQEFLKEHVSILAMNEDEAEA 260 (434)
T ss_pred HhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHc--CCEEEEECcchhhccccHHHHHHHHHhcCCEEEcCHHHHHH
Confidence 4677888888432211 112234455666666667 899999998765443332222 1 11346899999999999
Q ss_pred hcCCChH-HHHH-HHHhCCCEEEEEeCCe
Q psy9483 126 LLSGSEV-NAAY-IKQGHPNLTVIVKGHE 152 (186)
Q Consensus 126 L~~~~~~-~~a~-~a~~~~~~~vvlKG~~ 152 (186)
|++.++. ++++ +.+.. ..+||=.|..
T Consensus 261 LtG~~d~eea~~~L~~~~-~~VVVTlG~~ 288 (434)
T PRK15074 261 LTGESDPLLASDKALDWV-DLVLCTAGPI 288 (434)
T ss_pred HhCCCCHHHHHHHHHcCC-CEEEEEECCC
Confidence 9997333 4555 65443 3444444654
No 72
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=95.22 E-value=0.3 Score=39.92 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=65.0
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccc-cccCccc-ccccCCCeEecCCHHHHhhhcC
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKL-VAEHPGL-IQDYRGPVYLTPNKREYENLLS 128 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~-l~~~~~l-~~~~~~~~iiTPh~~E~~rL~~ 128 (186)
.++.+|.+.+++ +. .+ ....+.+ . .+|+++|+..... ....... .+..+...+++||..|+..+.
T Consensus 104 ~~~~~~~~~~~~-~~--~~---~~~~~~~----~--~~~v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~~- 170 (254)
T cd01937 104 STITAEIVILGP-VP--EE---ISPSLFR----K--FAFISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVIS- 170 (254)
T ss_pred ccCcccEEEECC-Cc--ch---hcHHHHh----h--hhheeEccccceeeccccchHHHhhcccCcEEEEcHHHHhhcC-
Confidence 356799999985 42 22 2222222 1 3689999976421 1111111 122356799999999999842
Q ss_pred CChHHHHH-HHHhCCCEEEEEeCCe-eEEEcCCeEEEEcCCC-CCCCCCChhHHHHhhh
Q psy9483 129 GSEVNAAY-IKQGHPNLTVIVKGHE-DVIKNNQISLTCKEGN-SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 129 ~~~~~~a~-~a~~~~~~~vvlKG~~-~~I~~~~~~~~~~~g~-~~la~~GsGDvLaGii 184 (186)
+..+.++ +.+.....+|+-.|.. .+++++++.+....-. ..--+.|+||++.+.+
T Consensus 171 -~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~ 228 (254)
T cd01937 171 -TPTELARLIKETGVKEIIVTDGEEGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAF 228 (254)
T ss_pred -CHHHHHHHHHHcCCCEEEEeeCCcceEEEECCccEEccccCceeccCCCchHHHHHHH
Confidence 2223555 5443322344444443 3445555444433221 2235899999998764
No 73
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=93.67 E-value=1.1 Score=36.60 Aligned_cols=119 Identities=11% Similarity=0.082 Sum_probs=65.4
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCCC
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSGS 130 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~~ 130 (186)
.++.+|.+.+.. ... . +.+.++++.+++. ++++++|+...... ..+.+..+...++.+|..|... +
T Consensus 109 ~~~~~~~v~~~~-~~~-~---~~~~~~~~~a~~~--g~~v~~D~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~----~ 174 (264)
T cd01940 109 YLSQFDLVHTGI-YSH-E---GHLEKALQALVGA--GALISFDFSDRWDD---DYLQLVCPYVDFAFFSASDLSD----E 174 (264)
T ss_pred HHhcCCEEEEcc-ccc-H---HHHHHHHHHHHHc--CCEEEEcCcccCCH---HHHHhhcccCCEEEechhhcCc----c
Confidence 457899999984 442 2 2344556656666 88999999764311 1111112344677787665421 2
Q ss_pred hH-HHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCCC-CCCCCCChhHHHHhh
Q psy9483 131 EV-NAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEGN-SWRRCGGQGDLVAGH 183 (186)
Q Consensus 131 ~~-~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g~-~~la~~GsGDvLaGi 183 (186)
+. +.++ +.+.....+|+=.|..- ++..+++.+....-. ...-+.|.||.+.|-
T Consensus 175 ~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag 231 (264)
T cd01940 175 EVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAG 231 (264)
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHH
Confidence 22 2444 44333235555566654 444555555444221 123599999997664
No 74
>PLN02548 adenosine kinase
Probab=93.12 E-value=0.99 Score=38.58 Aligned_cols=126 Identities=15% Similarity=0.156 Sum_probs=67.6
Q ss_pred hcccCcEEEEc---cCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccccc-CcccccccCCCeEecCCHHHHhhh
Q psy9483 51 WMNRMHSVLIG---PGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAE-HPGLIQDYRGPVYLTPNKREYENL 126 (186)
Q Consensus 51 ~~~~~~aivIG---pGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~-~~~l~~~~~~~~iiTPh~~E~~rL 126 (186)
.++.+|.+.+. +. ..++. +..+++.+++. +.++++|+..-..... ...+....+...++.||..|+..|
T Consensus 145 ~~~~~~~v~~~g~~~~--~~~~~---~~~~~~~a~~~--g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l 217 (332)
T PLN02548 145 LVEKAKFYYIAGFFLT--VSPES---IMLVAEHAAAN--NKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNETEARTF 217 (332)
T ss_pred HHhhCCEEEEEEEEcc--CCHHH---HHHHHHHHHHc--CCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecHHHHHHH
Confidence 34678888775 32 23333 33444545445 6677777643211111 111222234568999999999999
Q ss_pred cCC-----ChH-HHHH-HHHh---C---CCEEEEEeCCee-EEEcCCeEEEEcCC-CC---CCCCCChhHHHHhh
Q psy9483 127 LSG-----SEV-NAAY-IKQG---H---PNLTVIVKGHED-VIKNNQISLTCKEG-NS---WRRCGGQGDLVAGH 183 (186)
Q Consensus 127 ~~~-----~~~-~~a~-~a~~---~---~~~~vvlKG~~~-~I~~~~~~~~~~~g-~~---~la~~GsGDvLaGi 183 (186)
++. ++. +.++ +.+. . ...+|+=.|..- +++++++.+....- .+ ---+.|.||.+.|-
T Consensus 218 ~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag 292 (332)
T PLN02548 218 AKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGG 292 (332)
T ss_pred hCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHH
Confidence 875 122 2334 4432 1 124555566654 34455555443321 11 24699999997654
No 75
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=93.01 E-value=1.5 Score=35.97 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=62.8
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHHhhhcCCC
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSGS 130 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL~~~~ 130 (186)
.++.+|.+.+++.. .. . ++++.+++. .++++|++...... .+.+..+...++.||..|+..|.+
T Consensus 118 ~~~~~~~~~~~~~~-~~---~----~~~~~a~~~---~~~~~d~~~~~~~~---~~~~~~~~~d~~~~n~~e~~~l~~-- 181 (265)
T cd01947 118 ILDEGDGVFITAAA-VD---K----EAIRKCRET---KLVILQVTPRVRVD---ELNQALIPLDILIGSRLDPGELVV-- 181 (265)
T ss_pred HhccCCEEEEeccc-cc---H----HHHHHHHHh---CCeEeccCccccch---hHHHHhhhCCEEEeCHHHHHHhhh--
Confidence 35679999998754 11 1 223333332 46788876432111 111112345899999999998875
Q ss_pred hHHHHH-HHHhCCCEEEEEeCCe-eEEEcCCeEEEEcCC-CCCCCCCChhHHHHhh
Q psy9483 131 EVNAAY-IKQGHPNLTVIVKGHE-DVIKNNQISLTCKEG-NSWRRCGGQGDLVAGH 183 (186)
Q Consensus 131 ~~~~a~-~a~~~~~~~vvlKG~~-~~I~~~~~~~~~~~g-~~~la~~GsGDvLaGi 183 (186)
++ +.+.....+|+=.|.. .+++++++.+....- ...--+.|.||.+.+-
T Consensus 182 ----~~~~~~~~~~~viit~G~~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag 233 (265)
T cd01947 182 ----AEKIAGPFPRYLIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAG 233 (265)
T ss_pred ----HHHHHhccCCEEEEEeCCCCeEEEECCeeEECCCCCCCCCCCCCchHHHHHH
Confidence 23 3332213555556665 344555554444322 2223599999997653
No 76
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=89.95 E-value=3.7 Score=37.94 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=48.6
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccc-ccCc---cccc-ccCCCeEecCCHHHHhh
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLV-AEHP---GLIQ-DYRGPVYLTPNKREYEN 125 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l-~~~~---~l~~-~~~~~~iiTPh~~E~~r 125 (186)
.++.++.+.++.-...++.....+..+++.+++. +.++++|+.--.-+ .... +.+. ..+...||.||..|+..
T Consensus 263 ~l~~a~ilh~~~~~l~~~~~~~a~~~al~~Ak~~--G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~ 340 (496)
T PLN02543 263 VLKEARMFHFNSEVLTSPSMQSTLFRAIELSKKF--GGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEF 340 (496)
T ss_pred HhCCCceEEECChhhcCchHHHHHHHHHHHHHHC--CCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHH
Confidence 4567888888753333344455666777777666 88999998632111 1111 1111 12345899999999999
Q ss_pred hcCC
Q psy9483 126 LLSG 129 (186)
Q Consensus 126 L~~~ 129 (186)
|++.
T Consensus 341 Ltg~ 344 (496)
T PLN02543 341 LLDE 344 (496)
T ss_pred HhCC
Confidence 9985
No 77
>PLN02967 kinase
Probab=89.30 E-value=6.3 Score=37.21 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=47.4
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccc-cccccC---cccc-cccCCCeEecCCHHHHhh
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGL-KLVAEH---PGLI-QDYRGPVYLTPNKREYEN 125 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal-~~l~~~---~~l~-~~~~~~~iiTPh~~E~~r 125 (186)
.+..++.+.+|.=...++.....+..+++.+++. ++++++|+.-- .+.... .+.+ ...+...||.+|..|+..
T Consensus 332 ~l~~A~i~hfgg~~ll~e~~~~all~alk~Ak~~--Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~ 409 (581)
T PLN02967 332 VLKEAKMFYFNTHSLLDPTMRSTTLRAIKISKKL--GGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEF 409 (581)
T ss_pred HhcCCCEEEEeCchhcccchHHHHHHHHHHHHHC--CCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHH
Confidence 4567888888752222333445566677766666 78999998621 111110 0111 122345899999999999
Q ss_pred hcCC
Q psy9483 126 LLSG 129 (186)
Q Consensus 126 L~~~ 129 (186)
|++.
T Consensus 410 LtG~ 413 (581)
T PLN02967 410 LCGI 413 (581)
T ss_pred HhCC
Confidence 9985
No 78
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=89.12 E-value=3.5 Score=35.57 Aligned_cols=127 Identities=18% Similarity=0.058 Sum_probs=66.1
Q ss_pred cccCcEEEEccCCCCCHHHHHHHHHHHHHHHh------cCCCCCEEEecccccccccCc-ccccccCCCeEecCCHHHHh
Q psy9483 52 MNRMHSVLIGPGLGTEPLVQSNVISIIHKLKA------ANLNVPLVIDADGLKLVAEHP-GLIQDYRGPVYLTPNKREYE 124 (186)
Q Consensus 52 ~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~------~~~~~p~VlDadal~~l~~~~-~l~~~~~~~~iiTPh~~E~~ 124 (186)
+..++.+.+..-. ....+...++++.+++ . +.++++|+.-........ .+.+..+...++.||..|+.
T Consensus 118 ~~~a~~~hl~~~~---~~~~~~~~~~~~~a~~~~~d~~~--g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~ 192 (328)
T cd01943 118 LIRSSCIHLICSP---ERCASIVDDIINLFKLLKGNSPT--RPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAA 192 (328)
T ss_pred ccCCCeEEEECCH---HHHHHHHHHHHHHHHhhccccCC--ccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHH
Confidence 4567888885521 1122445555555554 3 566889986321100011 12223456799999999999
Q ss_pred hhcCCCh-----HH--HH----H-H---HHhCCCEEEEEeCCe-eEEEc--CCeEEEEcCCC----CCCCCCChhHHHHh
Q psy9483 125 NLLSGSE-----VN--AA----Y-I---KQGHPNLTVIVKGHE-DVIKN--NQISLTCKEGN----SWRRCGGQGDLVAG 182 (186)
Q Consensus 125 rL~~~~~-----~~--~a----~-~---a~~~~~~~vvlKG~~-~~I~~--~~~~~~~~~g~----~~la~~GsGDvLaG 182 (186)
.|++... .+ .. . + .......+||=.|.. .++++ ++..+....-. ...-+.|.||.+.|
T Consensus 193 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~a 272 (328)
T cd01943 193 RLLGLPTSEPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLG 272 (328)
T ss_pred HHhCCCCCCccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHH
Confidence 9999711 11 11 1 2 111212333334553 34444 33344333221 23469999999876
Q ss_pred h
Q psy9483 183 H 183 (186)
Q Consensus 183 i 183 (186)
-
T Consensus 273 g 273 (328)
T cd01943 273 G 273 (328)
T ss_pred H
Confidence 4
No 79
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=82.19 E-value=5.9 Score=35.16 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=53.3
Q ss_pred chhhcccceeEEEecCCch----hhhhhcCCceEEecccCCCcchHHHHHHhcc-cCcEEEEccCCCCCHHHHHHHHHHH
Q psy9483 4 ILQCATVTLSIYVCSEGAV----PILKNYSPELIVLPHYLDRNDSVDHIMYWMN-RMHSVLIGPGLGTEPLVQSNVISII 78 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~----~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~-~~~aivIGpGlg~~~~~~~~~~~~l 78 (186)
...++||.+|++.+|..-. ..++..+|=-++-++ +- ......+.++ .+|.+=||||--.+ ..+-++.++
T Consensus 50 ~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADI-HF---d~~lAl~a~~~G~~~iRINPGNig~--~~~~v~~vv 123 (360)
T PRK00366 50 RLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADI-HF---DYRLALAAAEAGADALRINPGNIGK--RDERVREVV 123 (360)
T ss_pred HHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEec-CC---CHHHHHHHHHhCCCEEEECCCCCCc--hHHHHHHHH
Confidence 4578999999999998743 355666665555554 21 1223333344 49999999995433 134566777
Q ss_pred HHHHhcCCCCCEEEe
Q psy9483 79 HKLKAANLNVPLVID 93 (186)
Q Consensus 79 ~~~~~~~~~~p~VlD 93 (186)
+.+++. ++|+=+=
T Consensus 124 ~~ak~~--~ipIRIG 136 (360)
T PRK00366 124 EAAKDY--GIPIRIG 136 (360)
T ss_pred HHHHHC--CCCEEEe
Confidence 777777 8887553
No 80
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=81.40 E-value=14 Score=30.29 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=56.4
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccc-cccCCCeEecCCHHHHhhhcCC
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLI-QDYRGPVYLTPNKREYENLLSG 129 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~-~~~~~~~iiTPh~~E~~rL~~~ 129 (186)
.++.+|.+.+.. .+ . .. ++++.+++. ++++++|+..... . +++ ...+...++.++..| ..
T Consensus 110 ~l~~~~~v~~~~-~~--~-~~----~~~~~~~~~--~~~v~~D~~~~~~---~-~~~~~~~~~~d~~~~~~~~-----~~ 170 (260)
T PRK09813 110 WLAQYDIVHAAI-WG--H-AE----DAFPQLHAA--GKLTAFDFSDKWD---S-PLWQTLVPHLDYAFASAPQ-----ED 170 (260)
T ss_pred HHHhCCEEEEec-cc--h-HH----HHHHHHHHc--CCeEEEEcCCCcc---H-HHHHHhCCceeEEEecCCc-----ch
Confidence 456789998863 11 1 12 233334445 8899999964320 0 111 111222334344221 00
Q ss_pred ChH-HHHH-HHHhCCCEEEEEeCCee-EEEcCCeEEEEcCCCCC-CCCCChhHHHHhh
Q psy9483 130 SEV-NAAY-IKQGHPNLTVIVKGHED-VIKNNQISLTCKEGNSW-RRCGGQGDLVAGH 183 (186)
Q Consensus 130 ~~~-~~a~-~a~~~~~~~vvlKG~~~-~I~~~~~~~~~~~g~~~-la~~GsGDvLaGi 183 (186)
.+. +.++ +.+...+.+|+=.|..- +++++++.+....-..- .-+.|.||.+.|-
T Consensus 171 ~~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag 228 (260)
T PRK09813 171 EFLRLKMKAIVARGAGVVIVTLGENGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAG 228 (260)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCceEEEECCEEEecCCcccCCCCCCCchHHHHHH
Confidence 112 2444 54443234555557754 44556665555432222 2599999998754
No 81
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=80.35 E-value=9.5 Score=33.28 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=39.4
Q ss_pred CCCeEecCCHHHHhhhcCCChHHHHHHHHhCCCEEEEEeCCe-eEEEcCCeEEEEcCCC-CCCCCCChhHHHHhhh
Q psy9483 111 RGPVYLTPNKREYENLLSGSEVNAAYIKQGHPNLTVIVKGHE-DVIKNNQISLTCKEGN-SWRRCGGQGDLVAGHR 184 (186)
Q Consensus 111 ~~~~iiTPh~~E~~rL~~~~~~~~a~~a~~~~~~~vvlKG~~-~~I~~~~~~~~~~~g~-~~la~~GsGDvLaGii 184 (186)
+...++.||..|+..|. .+ .+. +.. .+||=.|.. .+++++++.+....-. ..--+.|.||.+.|-.
T Consensus 180 ~~iDil~~ne~Ea~~l~----~~--~~~-~~~-~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agf 247 (335)
T PLN02630 180 PRIGFLKASSEEALFID----VE--EVR-QKC-CVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGF 247 (335)
T ss_pred HhCCEEEecHHHHhhcC----HH--HHc-cCC-EEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHH
Confidence 45689999999998872 11 122 332 445555554 4455556555444322 2235999999997743
No 82
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=79.45 E-value=2.4 Score=30.64 Aligned_cols=79 Identities=6% Similarity=-0.062 Sum_probs=51.3
Q ss_pred hhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcC
Q psy9483 6 QCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAAN 85 (186)
Q Consensus 6 ~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~ 85 (186)
+..|+|..+-+..+.+....+.+--+.-+... ...++.+..+.+|++++||=+ ....+-+++.. ...
T Consensus 5 l~C~~GaSSs~la~km~~~a~~~gi~~~i~a~------~~~e~~~~~~~~Dvill~PQv---~~~~~~i~~~~---~~~- 71 (99)
T cd05565 5 VLCAGGGTSGLLANALNKGAKERGVPLEAAAG------AYGSHYDMIPDYDLVILAPQM---ASYYDELKKDT---DRL- 71 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe------eHHHHHHhccCCCEEEEcChH---HHHHHHHHHHh---hhc-
Confidence 34577888888888888888777666655554 245666778889999999932 22233344433 233
Q ss_pred CCCCE-EEeccccc
Q psy9483 86 LNVPL-VIDADGLK 98 (186)
Q Consensus 86 ~~~p~-VlDadal~ 98 (186)
++|+ ++|+..+.
T Consensus 72 -~ipv~~I~~~~Yg 84 (99)
T cd05565 72 -GIKLVTTTGKQYI 84 (99)
T ss_pred -CCCEEEeCHHHHh
Confidence 6775 57876665
No 83
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=79.41 E-value=3.5 Score=30.12 Aligned_cols=84 Identities=13% Similarity=0.216 Sum_probs=56.5
Q ss_pred chhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHh
Q psy9483 4 ILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKA 83 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~ 83 (186)
+.+-..||++|-+-.+......+++--|+.+..++ ..++.+.+.++|++++||=+ .....-+++... .
T Consensus 4 IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s------~~e~~~~~~~~DvvLlGPQv---~y~~~~~~~~~~---~ 71 (102)
T COG1440 4 ILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYS------ETELSEYIDNADVVLLGPQV---RYMLKQLKEAAE---E 71 (102)
T ss_pred EEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEec------hhHHHHhhhcCCEEEEChHH---HHHHHHHHHHhc---c
Confidence 44566788888888888888888888888877762 24566677789999999932 222333334332 3
Q ss_pred cCCCCCE-EEecccccccc
Q psy9483 84 ANLNVPL-VIDADGLKLVA 101 (186)
Q Consensus 84 ~~~~~p~-VlDadal~~l~ 101 (186)
. ++|+ |+|.-.+..+.
T Consensus 72 ~--giPV~vI~~~dYG~mn 88 (102)
T COG1440 72 K--GIPVEVIDMLDYGMMN 88 (102)
T ss_pred c--CCCeEEeCHHHccCcC
Confidence 3 6786 68886665443
No 84
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=75.42 E-value=12 Score=33.10 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=57.1
Q ss_pred chhhcccceeEEEecCCch----hhhhhcCCceEEecccCCCcchHHHHHHhccc-CcEEEEccCCCCCHHHHHHHHHHH
Q psy9483 4 ILQCATVTLSIYVCSEGAV----PILKNYSPELIVLPHYLDRNDSVDHIMYWMNR-MHSVLIGPGLGTEPLVQSNVISII 78 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~----~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~-~~aivIGpGlg~~~~~~~~~~~~l 78 (186)
+..++||.+|++.+|..-. ..++.+++=-++-++ +- ....+.+..+. .|.+=||||---..+ -+++++
T Consensus 44 ~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDi-Hf---~~rla~~~~~~g~~k~RINPGNig~~~---~v~~vV 116 (361)
T COG0821 44 ALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADI-HF---DYRLALEAAECGVDKVRINPGNIGFKD---RVREVV 116 (361)
T ss_pred HHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEe-ec---cHHHHHHhhhcCcceEEECCcccCcHH---HHHHHH
Confidence 3568999999999998642 355555544455444 11 12333333333 899999999644443 466667
Q ss_pred HHHHhcCCCCCEEEecccccccccCccccccc
Q psy9483 79 HKLKAANLNVPLVIDADGLKLVAEHPGLIQDY 110 (186)
Q Consensus 79 ~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~ 110 (186)
+.+++. ++|+=+=- |.=+.++++++++
T Consensus 117 e~Ak~~--g~piRIGV---N~GSLek~~~~ky 143 (361)
T COG0821 117 EAAKDK--GIPIRIGV---NAGSLEKRLLEKY 143 (361)
T ss_pred HHHHHc--CCCEEEec---ccCchhHHHHHHh
Confidence 777777 89985533 3223344455444
No 85
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=75.36 E-value=3.6 Score=29.31 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=45.9
Q ss_pred hhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcC
Q psy9483 6 QCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAAN 85 (186)
Q Consensus 6 ~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~ 85 (186)
+..|+|+.+-+..+.+...+..+.=+.-+... .+.++.+....+|.++++|-+. .....+++... +.
T Consensus 8 l~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~------~~~~~~~~~~~~Dvill~pqi~---~~~~~i~~~~~---~~- 74 (95)
T TIGR00853 8 LLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG------SYGAAGEKLDDADVVLLAPQVA---YMLPDLKKETD---KK- 74 (95)
T ss_pred EECCCchhHHHHHHHHHHHHHHCCCcEEEEEe------cHHHHHhhcCCCCEEEECchHH---HHHHHHHHHhh---hc-
Confidence 44566666555555555555544444333332 2455666677899999999542 12333444432 23
Q ss_pred CCCCE-EEeccccccc
Q psy9483 86 LNVPL-VIDADGLKLV 100 (186)
Q Consensus 86 ~~~p~-VlDadal~~l 100 (186)
++|+ ++|+..+..+
T Consensus 75 -~ipv~~I~~~~Y~~m 89 (95)
T TIGR00853 75 -GIPVEVINGAQYGKL 89 (95)
T ss_pred -CCCEEEeChhhcccC
Confidence 5775 5888777654
No 86
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=73.58 E-value=18 Score=33.32 Aligned_cols=84 Identities=12% Similarity=0.177 Sum_probs=51.7
Q ss_pred hhhcccceeEEEecCCchh------hhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccC-----CCCCHHHHHH
Q psy9483 5 LQCATVTLSIYVCSEGAVP------ILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPG-----LGTEPLVQSN 73 (186)
Q Consensus 5 ~~r~GaGlv~v~~~~~~~~------~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpG-----lg~~~~~~~~ 73 (186)
+...|++++.+=..++... .+.....+..+... -++.+.++.+.+.++-+|++.||+| +| .++....
T Consensus 183 ~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiak-IEt~~av~nldeI~~~~DgImIargDLg~e~g-~~~v~~~ 260 (480)
T cd00288 183 GVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAK-IENQEGVNNFDEILEASDGIMVARGDLGVEIP-AEEVFLA 260 (480)
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEE-ECCHHHHHhHHHHHHhcCEEEECcchhhhhcC-hHHHHHH
Confidence 3456677766655555443 22233344333322 2334456666666667999999998 33 2456667
Q ss_pred HHHHHHHHHhcCCCCCEEE
Q psy9483 74 VISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 74 ~~~~l~~~~~~~~~~p~Vl 92 (186)
.+++++.+++. ++|+++
T Consensus 261 qk~ii~~~~~~--gkpvi~ 277 (480)
T cd00288 261 QKMLIAKCNLA--GKPVIT 277 (480)
T ss_pred HHHHHHHHHHc--CCCEEE
Confidence 77888888887 888876
No 87
>PRK05826 pyruvate kinase; Provisional
Probab=68.31 E-value=28 Score=31.98 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=50.5
Q ss_pred hhhcccceeEEEecCCchh------hhhhcCC-ceEEecccCCCcchHHHHHHhcccCcEEEEccC-----CCCCHHHHH
Q psy9483 5 LQCATVTLSIYVCSEGAVP------ILKNYSP-ELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPG-----LGTEPLVQS 72 (186)
Q Consensus 5 ~~r~GaGlv~v~~~~~~~~------~~~~~~P-e~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpG-----lg~~~~~~~ 72 (186)
++..|+..+.+=..++... .+..... +..+... -++.+.++.+.+.++.+|++.||+| ++ .++...
T Consensus 182 ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiak-IEt~eav~nldeI~~~~DgImIgrgDLg~elg-~~~v~~ 259 (465)
T PRK05826 182 AAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAK-IERAEAVDNIDEIIEASDGIMVARGDLGVEIP-DEEVPG 259 (465)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEE-EcCHHHHHhHHHHHHHcCEEEECcchhhhhcC-cHhHHH
Confidence 5566666665544444333 2222222 4433332 2334455666666667999999998 33 245556
Q ss_pred HHHHHHHHHHhcCCCCCEEEe
Q psy9483 73 NVISIIHKLKAANLNVPLVID 93 (186)
Q Consensus 73 ~~~~~l~~~~~~~~~~p~VlD 93 (186)
..+++++.+++. ++|+++-
T Consensus 260 ~qk~Ii~~c~~~--gKpvi~A 278 (465)
T PRK05826 260 LQKKIIRKAREA--GKPVITA 278 (465)
T ss_pred HHHHHHHHHHHc--CCCEEEE
Confidence 677788888877 8898774
No 88
>PLN02623 pyruvate kinase
Probab=64.88 E-value=36 Score=32.27 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=51.1
Q ss_pred hhcccceeEEEecCCchh------hhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccC-----CCCCHHHHHHH
Q psy9483 6 QCATVTLSIYVCSEGAVP------ILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPG-----LGTEPLVQSNV 74 (186)
Q Consensus 6 ~r~GaGlv~v~~~~~~~~------~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpG-----lg~~~~~~~~~ 74 (186)
...|++++.+=..++... .+.....+..+... -++.+.++.+.+.++..|.+.||+| +|. ++.....
T Consensus 288 ~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiak-IEt~eaVeNldeIl~g~DgImIgrgDLgvelg~-~~v~~~q 365 (581)
T PLN02623 288 VENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIITASDGAMVARGDLGAELPI-EEVPLLQ 365 (581)
T ss_pred HHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEE-ECCHHHHHhHHHHHHhCCEEEECcchhhhhcCc-HHHHHHH
Confidence 345666666555554432 23333344333332 2334556666667778999999998 332 4556677
Q ss_pred HHHHHHHHhcCCCCCEEE
Q psy9483 75 ISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 75 ~~~l~~~~~~~~~~p~Vl 92 (186)
+++++.+++. ++|+++
T Consensus 366 k~Ii~~~~~~--gKpviv 381 (581)
T PLN02623 366 EEIIRRCRSM--GKPVIV 381 (581)
T ss_pred HHHHHHHHHh--CCCEEE
Confidence 7888888888 899883
No 89
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=62.81 E-value=7.5 Score=32.93 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=35.5
Q ss_pred HHHHHHhcccCcEEEEccCCCCC--HHHHHHHHHHHHHHHhcCCCCCEEEeccccccccc
Q psy9483 45 VDHIMYWMNRMHSVLIGPGLGTE--PLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAE 102 (186)
Q Consensus 45 ~~~~~~~~~~~~aivIGpGlg~~--~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~ 102 (186)
.+++....+++|.+++.=|||-. +-|.+.+.+. . ++|+|+|++++..+..
T Consensus 51 ~~~l~~a~~r~D~vI~tGGLGPT~DDiT~e~vAka------~--g~~lv~~~~al~~i~~ 102 (255)
T COG1058 51 VEALREASERADVVITTGGLGPTHDDLTAEAVAKA------L--GRPLVLDEEALAMIEE 102 (255)
T ss_pred HHHHHHHHhCCCEEEECCCcCCCccHhHHHHHHHH------h--CCCcccCHHHHHHHHH
Confidence 45556667789999998888865 3344544444 3 8899999999876543
No 90
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=62.55 E-value=12 Score=26.61 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=46.8
Q ss_pred hhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcC
Q psy9483 6 QCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAAN 85 (186)
Q Consensus 6 ~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~ 85 (186)
+..|+|+.+-+..+.+...++.+.-+.=+... ++.++.+....+|.++++|=+. .....+++.. ...
T Consensus 4 ~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~------~~~~~~~~~~~~Diil~~Pqv~---~~~~~i~~~~---~~~- 70 (96)
T cd05564 4 LVCSAGMSTSILVKKMKKAAEKRGIDAEIEAV------PESELEEYIDDADVVLLGPQVR---YMLDEVKKKA---AEY- 70 (96)
T ss_pred EEcCCCchHHHHHHHHHHHHHHCCCceEEEEe------cHHHHHHhcCCCCEEEEChhHH---HHHHHHHHHh---ccC-
Confidence 44677776666666666666655444333332 2455656677899999999432 1222233322 223
Q ss_pred CCCCE-EEeccccccc
Q psy9483 86 LNVPL-VIDADGLKLV 100 (186)
Q Consensus 86 ~~~p~-VlDadal~~l 100 (186)
++|+ ++|++.+..+
T Consensus 71 -~~pv~~I~~~~Y~~~ 85 (96)
T cd05564 71 -GIPVAVIDMMDYGMM 85 (96)
T ss_pred -CCcEEEcChHhcccC
Confidence 6774 6898887644
No 91
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=61.04 E-value=50 Score=29.22 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=51.7
Q ss_pred chhhcccceeEEEecCCch----hhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHH
Q psy9483 4 ILQCATVTLSIYVCSEGAV----PILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIH 79 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~----~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~ 79 (186)
...++||.+|++.+|.... ..++..+|=-++-++ +- +..-.+....+.+|.+=||||---++ +-++.+++
T Consensus 42 ~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADI-HF--d~~lAl~a~~~g~dkiRINPGNig~~---e~v~~vv~ 115 (346)
T TIGR00612 42 ALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADI-HF--DYRLAALAMAKGVAKVRINPGNIGFR---ERVRDVVE 115 (346)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEee-CC--CcHHHHHHHHhccCeEEECCCCCCCH---HHHHHHHH
Confidence 4578999999999998743 344555554455444 11 11122334446799999999965444 34556666
Q ss_pred HHHhcCCCCCEEE
Q psy9483 80 KLKAANLNVPLVI 92 (186)
Q Consensus 80 ~~~~~~~~~p~Vl 92 (186)
.+++. ++|+=+
T Consensus 116 ~ak~~--~ipIRI 126 (346)
T TIGR00612 116 KARDH--GKAMRI 126 (346)
T ss_pred HHHHC--CCCEEE
Confidence 67777 888754
No 92
>PRK06354 pyruvate kinase; Provisional
Probab=58.31 E-value=57 Score=30.99 Aligned_cols=84 Identities=11% Similarity=0.198 Sum_probs=50.4
Q ss_pred hhhcccceeEEEecCCchhhh--hhc-----CCceEEecccCCCcchHHHHHHhcccCcEEEEccC-----CCCCHHHHH
Q psy9483 5 LQCATVTLSIYVCSEGAVPIL--KNY-----SPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPG-----LGTEPLVQS 72 (186)
Q Consensus 5 ~~r~GaGlv~v~~~~~~~~~~--~~~-----~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpG-----lg~~~~~~~ 72 (186)
+...|++++.+=..++...+. +.+ ..+..+..- -++.+.++.+.+.++.+|.+.||+| ++ .++...
T Consensus 187 ~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaK-IEt~eav~nldeI~~~~DgImVaRGDLgve~g-~e~v~~ 264 (590)
T PRK06354 187 GLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAK-IEKQEAIDNIDAILELCDGLMVARGDLGVEIP-AEEVPL 264 (590)
T ss_pred HHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEE-ECCHHHHHhHHHHHHhcCEEEEccchhhcccC-cHHHHH
Confidence 345677777666565554322 222 223222221 2334455666666677999999998 22 245556
Q ss_pred HHHHHHHHHHhcCCCCCEEE
Q psy9483 73 NVISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 73 ~~~~~l~~~~~~~~~~p~Vl 92 (186)
..+++++.+++. ++|+++
T Consensus 265 ~qk~ii~~~~~~--gkpvI~ 282 (590)
T PRK06354 265 LQKRLIKKANRL--GKPVIT 282 (590)
T ss_pred HHHHHHHHHHHc--CCCEEE
Confidence 677788888877 888875
No 93
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=56.22 E-value=12 Score=31.60 Aligned_cols=28 Identities=46% Similarity=0.797 Sum_probs=19.1
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 60 IGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 60 IGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
||.|+|..+ ...++-++.. . +.|+|+||
T Consensus 162 IGSg~G~~n--~~~l~iiie~---a--~VPviVDA 189 (262)
T COG2022 162 IGSGLGLQN--PYNLEIIIEE---A--DVPVIVDA 189 (262)
T ss_pred ccCCcCcCC--HHHHHHHHHh---C--CCCEEEeC
Confidence 788887654 3445545544 3 89999999
No 94
>KOG1224|consensus
Probab=55.09 E-value=40 Score=31.90 Aligned_cols=52 Identities=12% Similarity=0.271 Sum_probs=28.6
Q ss_pred CCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCC--HHHHHHHHHHHHHH
Q psy9483 29 SPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTE--PLVQSNVISIIHKL 81 (186)
Q Consensus 29 ~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~--~~~~~~~~~~l~~~ 81 (186)
.|-.++.-++..+++.+..+.+. ..+|+||||||=|.. .+-...+.+++..+
T Consensus 40 vp~V~~vh~~~~~~d~~~~l~q~-~~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~ 93 (767)
T KOG1224|consen 40 VPPVVIVHDEWTWEDAYHYLYQD-VAFDAIVVGPGPGSPMCAADIGICLRLLLEC 93 (767)
T ss_pred CCcEEEEeccccCHHHHHHHhhc-cccceEEecCCCCCCCcHHHHHHHHHHHHhc
Confidence 35544444322334444443332 359999999998876 33334555666543
No 95
>PTZ00300 pyruvate kinase; Provisional
Probab=55.03 E-value=72 Score=29.33 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=49.3
Q ss_pred hhhcccceeEEEecCCchhhh--h----hcCCce-EEecccCCCcchHHHHHHhcccCcEEEEccCCCC----CHHHHHH
Q psy9483 5 LQCATVTLSIYVCSEGAVPIL--K----NYSPEL-IVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGT----EPLVQSN 73 (186)
Q Consensus 5 ~~r~GaGlv~v~~~~~~~~~~--~----~~~Pe~-~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~----~~~~~~~ 73 (186)
++..|+..+.+=..++..... + ....+. ++.-+ ++.+.++.+.+.++.+|++.||+|=.. .++....
T Consensus 156 ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKI--Et~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~ 233 (454)
T PTZ00300 156 GVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKI--ENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVA 233 (454)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEE--CCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHH
Confidence 456677776655455443321 1 111222 22222 334556677777788999999998211 1344455
Q ss_pred HHHHHHHHHhcCCCCCEEE
Q psy9483 74 VISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 74 ~~~~l~~~~~~~~~~p~Vl 92 (186)
.+++++.+++. ++|+++
T Consensus 234 Qk~Ii~~~~~~--gkpvI~ 250 (454)
T PTZ00300 234 QKILISKCNVA--GKPVIC 250 (454)
T ss_pred HHHHHHHHHHc--CCCEEE
Confidence 66777777777 889876
No 96
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=53.16 E-value=32 Score=28.50 Aligned_cols=70 Identities=14% Similarity=0.279 Sum_probs=46.3
Q ss_pred cCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcc------cccccCCCeEecCCHHHHhhhc
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPG------LIQDYRGPVYLTPNKREYENLL 127 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~------l~~~~~~~~iiTPh~~E~~rL~ 127 (186)
..|+++||==.+... +.+.++++.+++. ..|+||=|.....+....| +++. .+|-.|+.+..|...++
T Consensus 27 gtdai~vGGS~~vt~---~~~~~~v~~ik~~--~lPvilfp~~~~~i~~~aDa~l~~svlNs-~~~~~iig~~~~~~~~~ 100 (223)
T TIGR01768 27 GTDAILIGGSQGVTY---EKTDTLIEALRRY--GLPIILFPSNPTNVSRDADALFFPSVLNS-DDPYWIIGAQIEAAPKF 100 (223)
T ss_pred CCCEEEEcCCCcccH---HHHHHHHHHHhcc--CCCEEEeCCCccccCcCCCEEEEEEeecC-CCchHHHhHHHHHHHHH
Confidence 479999996554443 3444555555666 7999998877766655543 3332 35678888888887776
Q ss_pred CC
Q psy9483 128 SG 129 (186)
Q Consensus 128 ~~ 129 (186)
+.
T Consensus 101 ~~ 102 (223)
T TIGR01768 101 KK 102 (223)
T ss_pred hh
Confidence 53
No 97
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=52.59 E-value=52 Score=29.33 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred chhhcccceeEEEecCCch----hhhhhc-----CCceEEecccCCCcchHHHHHHhcccCcEEEEccCCC--------C
Q psy9483 4 ILQCATVTLSIYVCSEGAV----PILKNY-----SPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLG--------T 66 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~----~~~~~~-----~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg--------~ 66 (186)
+...+||.+|++.+|..-. ..++.. +|=-++-++ +-+ .....+.++.+|.+=||||-- .
T Consensus 39 ~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADI-HFd---~~lAl~a~~~v~kiRINPGNi~~~~~~~~g 114 (359)
T PF04551_consen 39 RLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADI-HFD---YRLALEAIEAVDKIRINPGNIVDEFQEELG 114 (359)
T ss_dssp HHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEE-STT---CHHHHHHHHC-SEEEE-TTTSS----SS-S
T ss_pred HHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeec-CCC---HHHHHHHHHHhCeEEECCCccccccccccc
Confidence 4578999999999998743 244455 555455554 211 222333455599999999965 2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEe
Q psy9483 67 EPLVQSNVISIIHKLKAANLNVPLVID 93 (186)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~p~VlD 93 (186)
+ ..+-++++++.+++. ++|+=+=
T Consensus 115 ~--~~~~~~~vv~~ake~--~ipIRIG 137 (359)
T PF04551_consen 115 S--IREKVKEVVEAAKER--GIPIRIG 137 (359)
T ss_dssp S---HHHHHHHHHHHHHH--T-EEEEE
T ss_pred c--hHHHHHHHHHHHHHC--CCCEEEe
Confidence 2 134566777777777 8887543
No 98
>PRK10425 DNase TatD; Provisional
Probab=51.95 E-value=46 Score=27.86 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=33.5
Q ss_pred hHHHHHHhcccCcEEEEc-cCCCCC------HHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 44 SVDHIMYWMNRMHSVLIG-PGLGTE------PLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIG-pGlg~~------~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
.++++.++++....+.|| .||.-. +...+.++.-++.+.+. ++|++|=.
T Consensus 73 ~~~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~--~~Pv~iH~ 128 (258)
T PRK10425 73 TEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAEL--NMPVFMHC 128 (258)
T ss_pred HHHHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHh--CCCeEEEE
Confidence 345566666667888999 777521 23356777777777778 89998644
No 99
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=51.74 E-value=31 Score=31.18 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccc
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLV 100 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l 100 (186)
+.+.+..+++|.|++-=|+|..+ .+...+.+..+ . +.|+++|++++..+
T Consensus 51 ~~l~~a~~~~DlVIttGGlgpt~--dD~t~eava~~--~--g~~l~~~~~~~~~i 99 (413)
T TIGR00200 51 TIIRIASERADVLIFNGGLGPTS--DDLTAETIATA--K--GEPLVLNEAWLKEI 99 (413)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCC--cccHHHHHHHH--h--CCCcEECHHHHHHH
Confidence 44555567899999977766543 13344444322 3 78999999777654
No 100
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=51.38 E-value=71 Score=26.07 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=40.2
Q ss_pred CcEEEEccCCCCCHHHHHHHHHHHHHHHh-cCCCCCEEEecccccccccCcc------cccccCCCeEecCCHHHHhh
Q psy9483 55 MHSVLIGPGLGTEPLVQSNVISIIHKLKA-ANLNVPLVIDADGLKLVAEHPG------LIQDYRGPVYLTPNKREYEN 125 (186)
Q Consensus 55 ~~aivIGpGlg~~~~~~~~~~~~l~~~~~-~~~~~p~VlDadal~~l~~~~~------l~~~~~~~~iiTPh~~E~~r 125 (186)
.|++.||-=++.+++. +.++++.+++ . ++|++|=+.....+....| +++. .+|-.|+.+..|...
T Consensus 25 tDaI~VGGS~gvt~~~---~~~~v~~ik~~~--~lPvilfp~~~~~i~~~aD~~~~~sllns-~~~~~i~g~~~~~~~ 96 (205)
T TIGR01769 25 TDAIMVGGSLGIVESN---LDQTVKKIKKIT--NLPVILFPGNVNGLSRYADAVFFMSLLNS-ADTYFIVGAQILGAI 96 (205)
T ss_pred CCEEEEcCcCCCCHHH---HHHHHHHHHhhc--CCCEEEECCCccccCcCCCEEEEEEeecC-CCcchhhhHHHHHHH
Confidence 7999998545444432 3333444444 4 7999998877766665543 3332 356778887777773
No 101
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=51.34 E-value=25 Score=25.49 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=49.3
Q ss_pred chhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhc--ccCcEEEEccCCCCCHHHHHHHHHHHHHH
Q psy9483 4 ILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWM--NRMHSVLIGPGLGTEPLVQSNVISIIHKL 81 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~--~~~~aivIGpGlg~~~~~~~~~~~~l~~~ 81 (186)
+.+..|+|+.|-+..+.....++.+-=+.-+... ...++.+.. ..+|.+++||=+ ....+-+++..
T Consensus 4 ILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~------~~~e~~~~~~~~~~DvIll~PQi---~~~~~~i~~~~--- 71 (104)
T PRK09590 4 ALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAI------TATEGEKAIAAAEYDLYLVSPQT---KMYFKQFEEAG--- 71 (104)
T ss_pred EEEECCCchHHHHHHHHHHHHHHHCCCceEEEEe------cHHHHHHhhccCCCCEEEEChHH---HHHHHHHHHHh---
Confidence 4456788887776666666666654444433332 133444433 369999999932 22223343333
Q ss_pred HhcCCCCCE-EEecccccccccC
Q psy9483 82 KAANLNVPL-VIDADGLKLVAEH 103 (186)
Q Consensus 82 ~~~~~~~p~-VlDadal~~l~~~ 103 (186)
... ++|+ ++|++.+.-+..+
T Consensus 72 ~~~--~ipv~~I~~~~Y~~~~~~ 92 (104)
T PRK09590 72 AKV--GKPVVQIPPQAYIPIPMG 92 (104)
T ss_pred hhc--CCCEEEeCHHHcCCCccC
Confidence 233 6774 6899888765555
No 102
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=51.21 E-value=54 Score=29.51 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=47.1
Q ss_pred cCcEEEEccCCCCCH--------HHHHHHHHHHHHHHhcCCCCCEEEecccccccccCccccc------ccCCCeEecCC
Q psy9483 54 RMHSVLIGPGLGTEP--------LVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQ------DYRGPVYLTPN 119 (186)
Q Consensus 54 ~~~aivIGpGlg~~~--------~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~------~~~~~~iiTPh 119 (186)
.+|.|++-. .+.++ +..+.++++++. . +.|+|||..+=. +.+++.++ .-.+|.|-..|
T Consensus 153 ~aD~Ialr~-~S~DP~~~d~~~~e~a~~vk~V~~a---v--~vPLIL~gsg~~--~kD~eVLeaaLe~~~G~kpLL~SAt 224 (389)
T TIGR00381 153 GADMVTIHL-ISTDPKLDDKSPSEAAKVLEDVLQA---V--DVPIVIGGSGNP--EKDPLVLEKAAEVAEGERCLLASAN 224 (389)
T ss_pred CCCEEEEEe-cCCCccccccCHHHHHHHHHHHHHh---C--CCCEEEeCCCCC--cCCHHHHHHHHHHhCCCCcEEEecC
Confidence 589998877 33333 344555555443 3 899999966432 22222211 11245666666
Q ss_pred HH-HHhhhcCCChHHHHHHHHhCCCEEEEEeCCee
Q psy9483 120 KR-EYENLLSGSEVNAAYIKQGHPNLTVIVKGHED 153 (186)
Q Consensus 120 ~~-E~~rL~~~~~~~~a~~a~~~~~~~vvlKG~~~ 153 (186)
.. .++++. .++++| ++.|++++..+
T Consensus 225 ~e~Ny~~ia--------~lAk~y-g~~Vvv~s~~D 250 (389)
T TIGR00381 225 LDLDYEKIA--------NAAKKY-GHVVLSWTIMD 250 (389)
T ss_pred chhhHHHHH--------HHHHHh-CCeEEEEcCCc
Confidence 66 343333 377888 58888877544
No 103
>PLN03139 formate dehydrogenase; Provisional
Probab=49.87 E-value=33 Score=30.74 Aligned_cols=9 Identities=22% Similarity=0.250 Sum_probs=8.0
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 334 NvilTPHia 342 (386)
T PLN03139 334 NHAMTPHIS 342 (386)
T ss_pred CeEEccccc
Confidence 489999987
No 104
>PRK09206 pyruvate kinase; Provisional
Probab=49.74 E-value=95 Score=28.67 Aligned_cols=85 Identities=9% Similarity=0.069 Sum_probs=49.1
Q ss_pred hhhcccceeEEEecCCchhh------hhhcC-CceEEecccCCCcchHHHHHHhcccCcEEEEccCCCC----CHHHHHH
Q psy9483 5 LQCATVTLSIYVCSEGAVPI------LKNYS-PELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGT----EPLVQSN 73 (186)
Q Consensus 5 ~~r~GaGlv~v~~~~~~~~~------~~~~~-Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~----~~~~~~~ 73 (186)
+.+.|++++-+=..++...+ +.... .+..+..- -++.+.++.+.+.++-+|.+.||+|=.. .++....
T Consensus 181 ~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaK-IEt~eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~ 259 (470)
T PRK09206 181 GCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISK-IENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFA 259 (470)
T ss_pred HHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEE-ECCHHHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHH
Confidence 34566777766555554432 22221 23322222 2334455666666667999999998211 1344556
Q ss_pred HHHHHHHHHhcCCCCCEEE
Q psy9483 74 VISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 74 ~~~~l~~~~~~~~~~p~Vl 92 (186)
.+++++.+++. ++|+++
T Consensus 260 qk~ii~~~~~~--gkpvI~ 276 (470)
T PRK09206 260 QKMMIEKCNRA--RKVVIT 276 (470)
T ss_pred HHHHHHHHHHc--CCCEEE
Confidence 66777777777 888876
No 105
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=49.36 E-value=49 Score=27.83 Aligned_cols=70 Identities=13% Similarity=0.279 Sum_probs=49.2
Q ss_pred cCcEEEEccCCCCCHHHHHHHHHHHHHHH-hcCCCCCEEEecccccccccCcc------cccccCCCeEecCCHHHHhhh
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLK-AANLNVPLVIDADGLKLVAEHPG------LIQDYRGPVYLTPNKREYENL 126 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~~~l~~~~-~~~~~~p~VlDadal~~l~~~~~------l~~~~~~~~iiTPh~~E~~rL 126 (186)
..|++.||==++..++. +.++++.++ .. +.|+||-|.....++...| +++. ..+-.++.+.-|...+
T Consensus 41 GTDaImIGGS~gvt~~~---~~~~v~~ik~~~--~lPvilfP~~~~~is~~aDavff~svLNS-~n~~~i~gaq~~~a~~ 114 (240)
T COG1646 41 GTDAIMIGGSDGVTEEN---VDNVVEAIKERT--DLPVILFPGSPSGISPYADAVFFPSVLNS-DNPYWIVGAQVEGAKL 114 (240)
T ss_pred CCCEEEECCcccccHHH---HHHHHHHHHhhc--CCCEEEecCChhccCccCCeEEEEEEecC-CCcccccchhhhhhHH
Confidence 58999999766655433 333444444 34 8999999988887777653 3333 3567889999999888
Q ss_pred cCC
Q psy9483 127 LSG 129 (186)
Q Consensus 127 ~~~ 129 (186)
++.
T Consensus 115 ~~~ 117 (240)
T COG1646 115 VGK 117 (240)
T ss_pred HHh
Confidence 876
No 106
>PRK08605 D-lactate dehydrogenase; Validated
Probab=48.13 E-value=29 Score=30.10 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=13.8
Q ss_pred cCcEEEEccCCCCCHHHHHHHH
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVI 75 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~ 75 (186)
+.++++|+.+-|.-..+.+++.
T Consensus 227 k~gailIN~sRG~~vd~~aL~~ 248 (332)
T PRK08605 227 KKGAVFVNCARGSLVDTKALLD 248 (332)
T ss_pred CCCcEEEECCCCcccCHHHHHH
Confidence 3678888888775544444443
No 107
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=47.91 E-value=49 Score=28.58 Aligned_cols=9 Identities=33% Similarity=0.449 Sum_probs=7.9
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 269 nvi~TPHia 277 (312)
T PRK15469 269 RVAITPHVA 277 (312)
T ss_pred CeEECCcCC
Confidence 489999987
No 108
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=47.56 E-value=58 Score=25.24 Aligned_cols=62 Identities=13% Similarity=0.274 Sum_probs=36.2
Q ss_pred hhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEE
Q psy9483 23 PILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLV 91 (186)
Q Consensus 23 ~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~V 91 (186)
..++....++-+..++ . ..++..+...++|.++|.+|-+...+ ......+++.+.+. ++|++
T Consensus 15 ~~l~~~~~~~~v~~~~-~---~~~~~~~~~~~~d~iii~Gg~~~~~d-~~~~~~~i~~~~~~--~~Pil 76 (192)
T PF00117_consen 15 RALRELGIDVEVVRVD-S---DFEEPLEDLDDYDGIIISGGPGSPYD-IEGLIELIREARER--KIPIL 76 (192)
T ss_dssp HHHHHTTEEEEEEETT-G---GHHHHHHHTTTSSEEEEECESSSTTS-HHHHHHHHHHHHHT--TSEEE
T ss_pred HHHHHCCCeEEEEECC-C---chhhhhhhhcCCCEEEECCcCCcccc-cccccccccccccc--ceEEE
Confidence 3455555566555541 1 12222224678999999999886654 34444556666555 67763
No 109
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=47.44 E-value=21 Score=27.94 Aligned_cols=60 Identities=17% Similarity=0.208 Sum_probs=26.6
Q ss_pred cCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCC-CEEEecccccccccCcccccccCCCeEecCCHH
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNV-PLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKR 121 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~-p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~ 121 (186)
+.++++||.|=|.--. .+.+.+.++. - +. -..||----.-+..+..++ ..+ .+++|||.+
T Consensus 118 k~ga~lvN~aRG~~vd-e~aL~~aL~~---g--~i~ga~lDV~~~EP~~~~~~l~-~~~-nvi~TPH~a 178 (178)
T PF02826_consen 118 KPGAVLVNVARGELVD-EDALLDALES---G--KIAGAALDVFEPEPLPADSPLW-DLP-NVILTPHIA 178 (178)
T ss_dssp TTTEEEEESSSGGGB--HHHHHHHHHT---T--SEEEEEESS-SSSSSSTTHHHH-TST-TEEEESS-T
T ss_pred ccceEEEeccchhhhh-hhHHHHHHhh---c--cCceEEEECCCCCCCCCCChHH-cCC-CEEEeCccC
Confidence 4788999987332211 1334444432 1 11 1345542222111111232 233 499999974
No 110
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=46.20 E-value=1.6e+02 Score=24.41 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=21.2
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCC-CEEEeccccc
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNV-PLVIDADGLK 98 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~-p~VlDadal~ 98 (186)
........+..|..+..++..+ .-+.++++ +. -+|||--|++
T Consensus 148 l~~~~~~a~asPy~~~~~~l~~----Aa~~L~~~--gadlIvLDCmGYt 190 (221)
T PF07302_consen 148 LGNPVVVAAASPYEGDEEELAA----AARELAEQ--GADLIVLDCMGYT 190 (221)
T ss_pred cCCCeEEEEeCCCCCCHHHHHH----HHHHHHhc--CCCEEEEECCCCC
Confidence 3455667777776654433222 22223323 22 3667777664
No 111
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=45.90 E-value=1.7e+02 Score=24.09 Aligned_cols=119 Identities=8% Similarity=-0.011 Sum_probs=59.4
Q ss_pred cccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCC-----CCCEEEecccccccccCcccccccCCCeEecCCHHHHhhh
Q psy9483 52 MNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANL-----NVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENL 126 (186)
Q Consensus 52 ~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~-----~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~~rL 126 (186)
.+++|.+.+..-+. +... ++++.+++... ..++++|..-- .+++....+...++.+|..|...+
T Consensus 125 ~~~~~~~~~~g~~~--~~~~----~~~~~~~~~~~~~~~~~~~v~~d~~~~-----~~~~~~~l~~~di~~~n~~~~~~~ 193 (290)
T cd01939 125 LTQYGWIHFEGRNP--DETL----RMMQHIEEHNNRRPEIRITISVEVEKP-----REELLELAAYCDVVFVSKDWAQSR 193 (290)
T ss_pred hccCCEEEEeccCH--HHHH----HHHHHHHHhcCcCCCcceEEEEEeccC-----chhhhhHHhhCCEEEEEhHHHHhc
Confidence 36799999965322 2222 33333333210 14677776421 112222223347888999887765
Q ss_pred cCC-ChHHHHH--HHHhCC-CEEEEEeCCeeE-EEcC-CeEEEEcCCC--CCCCCCChhHHHHh
Q psy9483 127 LSG-SEVNAAY--IKQGHP-NLTVIVKGHEDV-IKNN-QISLTCKEGN--SWRRCGGQGDLVAG 182 (186)
Q Consensus 127 ~~~-~~~~~a~--~a~~~~-~~~vvlKG~~~~-I~~~-~~~~~~~~g~--~~la~~GsGDvLaG 182 (186)
+. +..+..+ ..+..+ ..+|+=.|..-. ++.+ +..+....-. +-.-+.|.||.+.|
T Consensus 194 -~~~~~~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~a 256 (290)
T cd01939 194 -GYKSPEECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNA 256 (290)
T ss_pred -CcCCHHHHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHH
Confidence 54 3222222 222211 245555666553 4453 4444444222 23469999999775
No 112
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=45.07 E-value=32 Score=29.90 Aligned_cols=9 Identities=22% Similarity=0.220 Sum_probs=7.8
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 279 nvilTPHia 287 (323)
T PRK15409 279 NVVAVPHIG 287 (323)
T ss_pred CEEEcCcCC
Confidence 499999986
No 113
>PRK07574 formate dehydrogenase; Provisional
Probab=45.02 E-value=48 Score=29.67 Aligned_cols=9 Identities=22% Similarity=0.176 Sum_probs=7.8
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 327 NvilTPHia 335 (385)
T PRK07574 327 RNGMTPHIS 335 (385)
T ss_pred CeEECCccc
Confidence 489999987
No 114
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=44.55 E-value=1.6e+02 Score=25.70 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=49.7
Q ss_pred chhhcccceeEEEecCCc--------------------------hhhhhhcCCceEEecccCCCcchHHHHHHhcccCcE
Q psy9483 4 ILQCATVTLSIYVCSEGA--------------------------VPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHS 57 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~--------------------------~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~a 57 (186)
...|+|.|-++++=++.+ ...++...|++-+..+..+- ..+.+.+.++.+|.
T Consensus 42 ~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~--~~~~~~~~~~~~Dl 119 (338)
T PRK12475 42 ALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDV--TVEELEELVKEVDL 119 (338)
T ss_pred HHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccC--CHHHHHHHhcCCCE
Confidence 457889999997755531 13455667887666652111 12344556788999
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 58 VLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 58 ivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
++... .+.++...+.++... . ++|+|.=+
T Consensus 120 Vid~~---D~~~~r~~in~~~~~---~--~ip~i~~~ 148 (338)
T PRK12475 120 IIDAT---DNFDTRLLINDLSQK---Y--NIPWIYGG 148 (338)
T ss_pred EEEcC---CCHHHHHHHHHHHHH---c--CCCEEEEE
Confidence 88886 355566556555433 4 78987543
No 115
>PRK13243 glyoxylate reductase; Reviewed
Probab=43.92 E-value=33 Score=29.82 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=8.0
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+|+|||.+
T Consensus 282 nvilTPHia 290 (333)
T PRK13243 282 NVVLAPHIG 290 (333)
T ss_pred CEEECCcCC
Confidence 499999987
No 116
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=43.22 E-value=25 Score=27.66 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=31.5
Q ss_pred HHHHHhcccCcEEEEccCCCCC--HHHHHHHHHHHHHHHhcCCCCCEEEecccccccc
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTE--PLVQSNVISIIHKLKAANLNVPLVIDADGLKLVA 101 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~--~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~ 101 (186)
+.+.+..+++|.|++-=|+|.. +-+.+.+.+++ +++++.|+.++..+.
T Consensus 50 ~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~--------~~~l~~~~e~~~~i~ 99 (170)
T cd00885 50 EALRRASERADLVITTGGLGPTHDDLTREAVAKAF--------GRPLVLDEEALERIE 99 (170)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHHh--------CCCcccCHHHHHHHH
Confidence 4455556789999986555544 44555554443 788999998865554
No 117
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=42.32 E-value=18 Score=30.41 Aligned_cols=31 Identities=42% Similarity=0.770 Sum_probs=16.7
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccc
Q psy9483 60 IGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLK 98 (186)
Q Consensus 60 IGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~ 98 (186)
||.|.|..+ ...++.+++. . +.|+|+|| ||.
T Consensus 155 IGSg~Gi~n--~~~l~~i~~~---~--~vPvIvDA-GiG 185 (247)
T PF05690_consen 155 IGSGRGIQN--PYNLRIIIER---A--DVPVIVDA-GIG 185 (247)
T ss_dssp TTT---SST--HHHHHHHHHH---G--SSSBEEES----
T ss_pred cccCcCCCC--HHHHHHHHHh---c--CCcEEEeC-CCC
Confidence 566766554 2455555544 3 89999999 454
No 118
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=41.73 E-value=82 Score=29.23 Aligned_cols=57 Identities=23% Similarity=0.273 Sum_probs=34.6
Q ss_pred chhhcccceeEEEecCCc-------hhhhhhcCCce--EEecccCCCcchHHHHHHhc-ccCcEEEEccCCC
Q psy9483 4 ILQCATVTLSIYVCSEGA-------VPILKNYSPEL--IVLPHYLDRNDSVDHIMYWM-NRMHSVLIGPGLG 65 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~-------~~~~~~~~Pe~--~v~~~~~~~~~~~~~~~~~~-~~~~aivIGpGlg 65 (186)
+...+|++.+.+=+++.. ...++...|+. |.-.+ .+ .++..... ..+|+|.+|.|-|
T Consensus 255 ~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v-~t----~e~a~~a~~aGaD~i~vg~g~G 321 (505)
T PLN02274 255 HLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV-VT----MYQAQNLIQAGVDGLRVGMGSG 321 (505)
T ss_pred HHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC-CC----HHHHHHHHHcCcCEEEECCCCC
Confidence 466789999999888753 44666777754 33344 11 22222222 3599999985433
No 119
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=40.60 E-value=38 Score=26.34 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=24.9
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEE
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLV 91 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~V 91 (186)
.++.+.+..+++|.++||||--+.. --.+++.++.+ ++|+|
T Consensus 57 lId~I~~a~~~~dgiiINpga~THt--SiAl~DAl~~~-----~~P~V 97 (146)
T PRK05395 57 LIDRIHEARDGADGIIINPGAYTHT--SVALRDALAAV-----SIPVI 97 (146)
T ss_pred HHHHHHhcccCCcEEEECchHHHHH--HHHHHHHHHcC-----CCCEE
Confidence 4455555556789999999854332 22344555443 67875
No 120
>PRK10812 putative DNAse; Provisional
Probab=39.89 E-value=1.1e+02 Score=25.60 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=33.0
Q ss_pred hHHHHHHhcccCcEEEEc-cCCCCC------HHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 44 SVDHIMYWMNRMHSVLIG-PGLGTE------PLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIG-pGlg~~------~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
.++++.+.++...++.|| .||.-. +...+.++..++.+++. ++|+++=.
T Consensus 76 ~~~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~--~~Pv~iH~ 131 (265)
T PRK10812 76 DVEELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGREL--NKPVIVHT 131 (265)
T ss_pred HHHHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHh--CCCeEEEe
Confidence 456677677777888896 454321 23456777777777777 89998753
No 121
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=36.80 E-value=2.2e+02 Score=25.89 Aligned_cols=84 Identities=17% Similarity=0.253 Sum_probs=45.5
Q ss_pred chhhcccceeEEEecCC-------chhhhhhcCCceEEe--cccCCCcchHHHHHHhc-ccCcEEEEccCCC-----C--
Q psy9483 4 ILQCATVTLSIYVCSEG-------AVPILKNYSPELIVL--PHYLDRNDSVDHIMYWM-NRMHSVLIGPGLG-----T-- 66 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~-------~~~~~~~~~Pe~~v~--~~~~~~~~~~~~~~~~~-~~~~aivIGpGlg-----~-- 66 (186)
+...+|+..+.+-+.+. ....++...|+..+. .+ .+ .++..... ..+|++.+|.|-| +
T Consensus 231 ~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v--~t---~~~a~~l~~aGad~i~vg~g~G~~~~t~~~ 305 (450)
T TIGR01302 231 ALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV--AT---AEQAKALIDAGADGLRVGIGPGSICTTRIV 305 (450)
T ss_pred HHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC--CC---HHHHHHHHHhCCCEEEECCCCCcCCcccee
Confidence 45678899888877444 223455666765322 22 11 23333333 2599998775433 1
Q ss_pred ---CHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 67 ---EPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 67 ---~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
...+...+.++.+.+++. +.|++-|.
T Consensus 306 ~~~g~p~~~~i~~~~~~~~~~--~vpviadG 334 (450)
T TIGR01302 306 AGVGVPQITAVYDVAEYAAQS--GIPVIADG 334 (450)
T ss_pred cCCCccHHHHHHHHHHHHhhc--CCeEEEeC
Confidence 112334444544444445 78998887
No 122
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=36.72 E-value=47 Score=25.81 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=24.7
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEE
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLV 91 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~V 91 (186)
.++.+.+...++|.++||||--+.. --.+++.++. . ++|+|
T Consensus 57 lId~i~~a~~~~dgiIINpga~THt--SiAl~DAl~~---~--~~P~V 97 (146)
T PRK13015 57 LIDWIHEARGDVAGIVINPGAYTHT--SVAIRDALAA---L--ELPVI 97 (146)
T ss_pred HHHHHHHhhhcCCEEEEcchHHhhh--HHHHHHHHHc---C--CCCEE
Confidence 4555555555689999999854332 1234455543 3 77875
No 123
>PRK06487 glycerate dehydrogenase; Provisional
Probab=36.42 E-value=92 Score=26.84 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=8.0
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 278 nvilTPHia 286 (317)
T PRK06487 278 RLIVTPHSA 286 (317)
T ss_pred CEEECCccc
Confidence 499999988
No 124
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=36.24 E-value=1.1e+02 Score=25.47 Aligned_cols=70 Identities=13% Similarity=0.360 Sum_probs=46.5
Q ss_pred ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcc------cccccCCCeEecCCHHHHhhh
Q psy9483 53 NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPG------LIQDYRGPVYLTPNKREYENL 126 (186)
Q Consensus 53 ~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~------l~~~~~~~~iiTPh~~E~~rL 126 (186)
...|++.||==.+..+ +.+.++++.+++. +.|+||=|.....++...| +++. .+|-.|+.+..|...+
T Consensus 31 ~gtdai~vGGS~~vt~---~~~~~~v~~ik~~--~lPvilfp~~~~~i~~~aDa~l~~svlNs-~~~~~iig~~~~~~~~ 104 (232)
T PRK04169 31 SGTDAIIVGGSDGVTE---ENVDELVKAIKEY--DLPVILFPGNIEGISPGADAYLFPSVLNS-RNPYWIIGAHVEAAPI 104 (232)
T ss_pred cCCCEEEEcCCCccch---HHHHHHHHHHhcC--CCCEEEeCCCccccCcCCCEEEEEEEecC-CCcchHhhHHHHHHHH
Confidence 4589999996554443 3344555555555 8999999987777666653 3332 3567788888777776
Q ss_pred cC
Q psy9483 127 LS 128 (186)
Q Consensus 127 ~~ 128 (186)
+.
T Consensus 105 ~~ 106 (232)
T PRK04169 105 IK 106 (232)
T ss_pred Hh
Confidence 63
No 125
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=35.59 E-value=47 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=24.4
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEE
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLV 91 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~V 91 (186)
.++.+.+...++|.++||||--+.. --.+++.++.+ ++|+|
T Consensus 55 lid~I~~a~~~~dgiIINpga~THt--SvAi~DAl~~~-----~~P~V 95 (140)
T cd00466 55 LIDWIHEARDGADGIIINPGAYTHT--SIALRDALAAV-----SIPVI 95 (140)
T ss_pred HHHHHHHhhccCcEEEEcchHHHHH--HHHHHHHHHcC-----CCCEE
Confidence 4455555555689999999844322 22344555433 67875
No 126
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=35.41 E-value=53 Score=25.41 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=24.3
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEE
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLV 91 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~V 91 (186)
.++.+.+....+|.++||||--+.. --.+++.++. . +.|+|
T Consensus 55 lId~i~~a~~~~dgiIINpga~THt--SiAl~DAl~~---~--~~P~v 95 (141)
T TIGR01088 55 LIDKIHEAEGQYDGIIINPGALTHT--SVALRDALAA---V--SLPVV 95 (141)
T ss_pred HHHHHHhccccCCEEEEcChHHhhh--HHHHHHHHHc---C--CCCEE
Confidence 3455555445689999999954432 1234455543 3 67875
No 127
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.27 E-value=96 Score=24.65 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=22.1
Q ss_pred cccCcEEEEccCCCCCHHHHHHHHH--HHHHHHhcCCCCCE
Q psy9483 52 MNRMHSVLIGPGLGTEPLVQSNVIS--IIHKLKAANLNVPL 90 (186)
Q Consensus 52 ~~~~~aivIGpGlg~~~~~~~~~~~--~l~~~~~~~~~~p~ 90 (186)
+..+|.+++ ||-|......+.+++ +++.+.+. ++|+
T Consensus 36 ~~~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~~--~~Pi 73 (196)
T PRK13170 36 ILAADKLFL-PGVGTAQAAMDQLRERELIDLIKAC--TQPV 73 (196)
T ss_pred hCCCCEEEE-CCCCchHHHHHHHHHcChHHHHHHc--CCCE
Confidence 356899999 998876555444432 33444445 6775
No 128
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=34.86 E-value=41 Score=25.95 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=23.2
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEE
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLV 91 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~V 91 (186)
.++.+.+...++|.++||||--+.. --.+++.++. . +.|+|
T Consensus 56 lid~I~~a~~~~dgiIINpga~tht--S~Ai~DAl~~---~--~~P~v 96 (140)
T PF01220_consen 56 LIDWIHEARDDVDGIIINPGAYTHT--SIAIRDALKA---I--SIPVV 96 (140)
T ss_dssp HHHHHHHHTCTTSEEEEE-GGGGHT---HHHHHHHHC---C--TS-EE
T ss_pred HHHHHHHHHhhCCEEEEccchhccc--cHHHHHHHHc---C--CCCEE
Confidence 4566666667799999999854322 1234445443 3 67865
No 129
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=34.65 E-value=2.5e+02 Score=26.03 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=45.5
Q ss_pred cchhhcccceeEEEecCC-------chhhhhhcCCceEEecccCCCcchHHHHHHhc-ccCcEEEEccCCCCC-------
Q psy9483 3 GILQCATVTLSIYVCSEG-------AVPILKNYSPELIVLPHYLDRNDSVDHIMYWM-NRMHSVLIGPGLGTE------- 67 (186)
Q Consensus 3 ~~~~r~GaGlv~v~~~~~-------~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~-~~~~aivIGpGlg~~------- 67 (186)
.++..+|+..+.+=+.+. ....++...|+..+.. .+ -...+.+.... ..+|++.+|.|-|..
T Consensus 247 ~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~-V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~ 323 (495)
T PTZ00314 247 AALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GN-VVTADQAKNLIDAGADGLRIGMGSGSICITQEVC 323 (495)
T ss_pred HHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CC-cCCHHHHHHHHHcCCCEEEECCcCCcccccchhc
Confidence 356778999988766433 2345566667643322 11 01122333232 359999876443310
Q ss_pred ---HHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 68 ---PLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 68 ---~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
..+...+.++.+.+++. +.|++-|.
T Consensus 324 ~~g~p~~~ai~~~~~~~~~~--~v~vIadG 351 (495)
T PTZ00314 324 AVGRPQASAVYHVARYARER--GVPCIADG 351 (495)
T ss_pred cCCCChHHHHHHHHHHHhhc--CCeEEecC
Confidence 11223444444444445 78988887
No 130
>KOG3009|consensus
Probab=33.99 E-value=1.7e+02 Score=27.32 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=39.1
Q ss_pred hcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHHHH
Q psy9483 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREY 123 (186)
Q Consensus 51 ~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~E~ 123 (186)
.+..++-|++-.-+. + ..+..+++ ++.. ++++++.|.-+....+-.+.+... ..+.||||..|+
T Consensus 422 dl~~a~~I~~DsNiS--~---~~Ma~il~-ak~~--k~~V~fEPTd~~k~~K~fk~l~v~-~i~~i~PN~~El 485 (614)
T KOG3009|consen 422 DLLSADFILLDSNIS--V---PVMARILE-AKKH--KKQVWFEPTDIDKVKKVFKTLLVG-AITAISPNANEL 485 (614)
T ss_pred hhhcCCEEEEcCCCC--H---HHHHHHHH-hhhc--cCceEecCCCchhhhhhhhhccee-eEEeeCCCHHHH
Confidence 344688888766443 2 34555665 4444 789999996654333222333222 357899999999
No 131
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=33.78 E-value=2e+02 Score=21.35 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=41.0
Q ss_pred hhhcccceeEEEecCCchh---hhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHH-
Q psy9483 5 LQCATVTLSIYVCSEGAVP---ILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHK- 80 (186)
Q Consensus 5 ~~r~GaGlv~v~~~~~~~~---~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~- 80 (186)
|.+.| |.|.=+.|+...+ ....+..+.+... +..+.-.-+++.+|+.++=|| .-.|.+.+-+++..
T Consensus 8 a~~~g-G~viGi~p~~~~~~~~~~~~~~~~~~~~~------~~~~Rk~~m~~~sda~I~lPG---G~GTl~El~~~~~~~ 77 (133)
T PF03641_consen 8 AKEAG-GRVIGIIPEFLFPFEEPPNPYVTELIIVD------DMFERKEIMIESSDAFIALPG---GIGTLDELFEALTLM 77 (133)
T ss_dssp HHHTT-TTEEEEEETTGTTTTTTCCTTSSEEEEES------SHHHHHHHHHHHESEEEEES----SHHHHHHHHHHHHHH
T ss_pred HHHcC-CeEEEEecCccccccccCCcccCceeEeC------ChHHHHHHHHHhCCEEEEEec---CCchHHHHHHHHHHH
Confidence 44555 5666666776655 2223344443322 112333345678999999998 33444444444432
Q ss_pred -HHhcCCCCCEE-Eecccc
Q psy9483 81 -LKAANLNVPLV-IDADGL 97 (186)
Q Consensus 81 -~~~~~~~~p~V-lDadal 97 (186)
+... +++|+| ++.++.
T Consensus 78 ~l~~~-~~~Piil~~~~g~ 95 (133)
T PF03641_consen 78 QLGRH-NKVPIILLNIDGF 95 (133)
T ss_dssp HTTSS-TS-EEEEEECGGC
T ss_pred hhccc-cCCCEEEeCCcch
Confidence 2112 133755 677764
No 132
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=33.53 E-value=1.9e+02 Score=27.55 Aligned_cols=83 Identities=14% Similarity=0.019 Sum_probs=49.8
Q ss_pred chhhcccceeEEEecCCch----hhhhhc-----CCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCH------
Q psy9483 4 ILQCATVTLSIYVCSEGAV----PILKNY-----SPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEP------ 68 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~----~~~~~~-----~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~------ 68 (186)
.+.++||.+|++.+|..-. ..++.. .|=-+|-++ +=+ .......++.+|.+=||||---+.
T Consensus 53 ~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADI-HF~---~~~A~~a~~~vdkiRINPGNi~~~~k~F~~ 128 (606)
T PRK00694 53 ALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADI-HFF---PQAAMHVADFVDKVRINPGNYVDKRNMFTG 128 (606)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeec-CCC---hHHHHHHHHhcCceEECCcccCCccccccc
Confidence 4678999999999997642 233333 333344333 111 122333445699999999965441
Q ss_pred -------------HHHHHHHHHHHHHHhcCCCCCEEE
Q psy9483 69 -------------LVQSNVISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 69 -------------~~~~~~~~~l~~~~~~~~~~p~Vl 92 (186)
...+-+..+++.+++. ++|+=+
T Consensus 129 ~~YtDeeY~~el~~I~e~~~~vV~~ake~--~~~IRI 163 (606)
T PRK00694 129 KIYTDEQYAHSLLRLEEKFSPLVEKCKRL--GKAMRI 163 (606)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHC--CCCEEE
Confidence 1134566777777777 788754
No 133
>PRK01215 competence damage-inducible protein A; Provisional
Probab=33.42 E-value=72 Score=26.94 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccccccc
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLV 100 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l 100 (186)
+.+.+..+++|.|++-=|+|... .+...+.+..+ . +.+++.|+..+..+
T Consensus 54 ~~l~~a~~~~DlVIttGG~g~t~--dD~t~eaia~~--~--g~~l~~~~e~~~~l 102 (264)
T PRK01215 54 SAFREAIDRADVVVSTGGLGPTY--DDKTNEGFAKA--L--GVELELNEDALRMI 102 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCh--hhhHHHHHHHH--h--CCCCCCCHHHHHHH
Confidence 44555667789999977766553 24444444332 3 67888887666544
No 134
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=33.38 E-value=69 Score=28.01 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=31.2
Q ss_pred HHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
+.+.+..+.+|.+||=-|+.+-+++..++...++.. ++|+||=.
T Consensus 73 ~~I~~~~~~~dG~VVtHGTDTmeeTA~~L~~~l~~~-----~kPVVlTG 116 (335)
T PRK09461 73 DDIKANYDDYDGFVILHGTDTMAYTASALSFMLENL-----GKPVIVTG 116 (335)
T ss_pred HHHHHHhccCCeEEEeeccchHHHHHHHHHHHHhCC-----CCCEEEeC
Confidence 334444467999999999887788877676555432 78998744
No 135
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=32.45 E-value=3.3e+02 Score=25.16 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=48.9
Q ss_pred chhhcccceeEEEecCC-------chhhhhhcCCceEEecccCCCcchHHHHHHhc-ccCcEEEEccCCCCC--------
Q psy9483 4 ILQCATVTLSIYVCSEG-------AVPILKNYSPELIVLPHYLDRNDSVDHIMYWM-NRMHSVLIGPGLGTE-------- 67 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~-------~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~-~~~~aivIGpGlg~~-------- 67 (186)
+....|+..+.+=+... ....++...|+..+..= + -...++..+.. ..+|++.+|.|-|+-
T Consensus 234 ~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~ag--n-v~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~ 310 (479)
T PRK07807 234 ALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAG--N-VVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTG 310 (479)
T ss_pred HHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEee--c-cCCHHHHHHHHHcCCCEEEECccCCcccccccccC
Confidence 34567777766655554 34466677787544331 1 01123333333 359999999887322
Q ss_pred --HHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 68 --PLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 68 --~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
......+.++.+.+++. ++|+|-|.
T Consensus 311 ~~~p~~~av~~~~~~~~~~--~~~via~g 337 (479)
T PRK07807 311 VGRPQFSAVLECAAAAREL--GAHVWADG 337 (479)
T ss_pred CchhHHHHHHHHHHHHHhc--CCcEEecC
Confidence 12345555555545555 78999887
No 136
>PRK03670 competence damage-inducible protein A; Provisional
Probab=31.83 E-value=38 Score=28.47 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=28.1
Q ss_pred HHHhcc-cCcEEEEccCCCC--CHHHHHHHHHHHHHHHhcCCCCCEEEeccccccc
Q psy9483 48 IMYWMN-RMHSVLIGPGLGT--EPLVQSNVISIIHKLKAANLNVPLVIDADGLKLV 100 (186)
Q Consensus 48 ~~~~~~-~~~aivIGpGlg~--~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l 100 (186)
+.+... .+|.|++-=|+|. ++-+.+.+.+++ +.|+++|++++..+
T Consensus 53 l~~a~~~~~DlVIttGGlGpt~dD~T~eava~a~--------g~~l~~~~e~~~~i 100 (252)
T PRK03670 53 VLEILSRKPEVLVISGGLGPTHDDVTMLAVAEAL--------GRELVLCEDCLERI 100 (252)
T ss_pred HHHHhhCCCCEEEECCCccCCCCCchHHHHHHHh--------CCCCcCCHHHHHHH
Confidence 333334 3788888655544 455556555543 77888988776544
No 137
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.15 E-value=3.7e+02 Score=23.92 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=46.7
Q ss_pred cccceeEEEecCCc-------hhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCH----------HH
Q psy9483 8 ATVTLSIYVCSEGA-------VPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEP----------LV 70 (186)
Q Consensus 8 ~GaGlv~v~~~~~~-------~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~----------~~ 70 (186)
.|++++.+=+.... ...++...|+.-+..=+-.+.+..+++.+ ..+|++.+|.|-|+-= ..
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIGpGSiCtTr~vtGvG~PQ 198 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIGPGSVCTTRVKTGVGYPQ 198 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEcccCCccccCccccccChhH
Confidence 57777777776663 33555667765332211112222333322 3599999998865432 23
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 71 QSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
...+.+.-+.+++. +.|+|-|.
T Consensus 199 ltAV~~~a~~a~~~--gvpiIADG 220 (346)
T PRK05096 199 LSAVIECADAAHGL--GGQIVSDG 220 (346)
T ss_pred HHHHHHHHHHHHHc--CCCEEecC
Confidence 34444444445556 88999997
No 138
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=31.02 E-value=1.3e+02 Score=26.26 Aligned_cols=17 Identities=18% Similarity=-0.032 Sum_probs=12.4
Q ss_pred HHHHhCCCEEEEEeCCee
Q psy9483 136 YIKQGHPNLTVIVKGHED 153 (186)
Q Consensus 136 ~~a~~~~~~~vvlKG~~~ 153 (186)
.++++| ++.|+.....|
T Consensus 169 ~lA~~y-~~~Vva~s~~D 185 (319)
T PRK04452 169 AAAMAY-GHAVIAWSPLD 185 (319)
T ss_pred HHHHHh-CCeEEEEcHHH
Confidence 378888 58888877554
No 139
>PRK06436 glycerate dehydrogenase; Provisional
Probab=30.72 E-value=1e+02 Score=26.59 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=10.4
Q ss_pred cCcEEEEccCCCCCH
Q psy9483 54 RMHSVLIGPGLGTEP 68 (186)
Q Consensus 54 ~~~aivIGpGlg~~~ 68 (186)
+.++++||.|-|.--
T Consensus 200 k~ga~lIN~sRG~~v 214 (303)
T PRK06436 200 RKGLAIINVARADVV 214 (303)
T ss_pred CCCeEEEECCCcccc
Confidence 367888888766443
No 140
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=30.35 E-value=2.3e+02 Score=21.42 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=38.8
Q ss_pred chhhcccceeEEEecCCchhhhhhcCCceEEecccCCCcchHHHHHHhcc-cCcEEEEccCCCC-------CHHHHHHHH
Q psy9483 4 ILQCATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMN-RMHSVLIGPGLGT-------EPLVQSNVI 75 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~-~~~aivIGpGlg~-------~~~~~~~~~ 75 (186)
.|.+.|+.-+++-........++...+.-+....+. +..+++.+..+ .+|.+++++-... .....+.++
T Consensus 67 ~a~~~g~~~vh~~~~~~~~~~~~~~~~~~~~~g~~~---~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (196)
T cd00564 67 LALAVGADGVHLGQDDLPVAEARALLGPDLIIGVST---HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLR 143 (196)
T ss_pred HHHHcCCCEEecCcccCCHHHHHHHcCCCCEEEeeC---CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHH
Confidence 456777775544332222233333333211112211 11234443332 5999999864321 112234444
Q ss_pred HHHHHHHhcCCCCCEEEeccccc
Q psy9483 76 SIIHKLKAANLNVPLVIDADGLK 98 (186)
Q Consensus 76 ~~l~~~~~~~~~~p~VlDadal~ 98 (186)
++.+. . +.|++.+. |++
T Consensus 144 ~~~~~---~--~~pv~a~G-Gi~ 160 (196)
T cd00564 144 EIAEL---V--EIPVVAIG-GIT 160 (196)
T ss_pred HHHHh---C--CCCEEEEC-CCC
Confidence 44322 3 68888885 443
No 141
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=30.02 E-value=1.2e+02 Score=26.01 Aligned_cols=9 Identities=22% Similarity=0.467 Sum_probs=8.0
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+|+|||.+
T Consensus 277 NvilTPH~a 285 (311)
T PRK08410 277 KLLITPHIA 285 (311)
T ss_pred CEEECCccc
Confidence 499999987
No 142
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=29.39 E-value=74 Score=29.50 Aligned_cols=9 Identities=33% Similarity=0.327 Sum_probs=7.9
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 271 nvi~TPHia 279 (525)
T TIGR01327 271 NVIATPHLG 279 (525)
T ss_pred CeEECCCcc
Confidence 499999987
No 143
>PRK03673 hypothetical protein; Provisional
Probab=29.09 E-value=62 Score=29.11 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=31.6
Q ss_pred HHHHHHhcccCcEEEEccCCCCC--HHHHHHHHHHHHHHHhcCCCCCEEEeccccccc
Q psy9483 45 VDHIMYWMNRMHSVLIGPGLGTE--PLVQSNVISIIHKLKAANLNVPLVIDADGLKLV 100 (186)
Q Consensus 45 ~~~~~~~~~~~~aivIGpGlg~~--~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l 100 (186)
.+.+.+..+++|.+++-=|+|.. +-+.+.+.+. . +.|+++|+..+..+
T Consensus 51 ~~~l~~a~~~~DlVI~tGGlGpt~dD~t~~avA~a------~--g~~L~~d~e~~~~i 100 (396)
T PRK03673 51 VAILRERSQHADVLIVNGGLGPTSDDLSALAAATA------A--GEGLVLHEEWLAEM 100 (396)
T ss_pred HHHHHHHhccCCEEEEcCCCCCCCcccHHHHHHHH------c--CCCceeCHHHHHHH
Confidence 34455566789999997777655 3344444333 3 78999999877444
No 144
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=29.01 E-value=1.6e+02 Score=24.90 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=49.9
Q ss_pred chHHHHHHhccc-CcEEEEccCCCCC---------HHHHHHHHHHHHHHHhcCCCCCEEEec-----ccccccccCcccc
Q psy9483 43 DSVDHIMYWMNR-MHSVLIGPGLGTE---------PLVQSNVISIIHKLKAANLNVPLVIDA-----DGLKLVAEHPGLI 107 (186)
Q Consensus 43 ~~~~~~~~~~~~-~~aivIGpGlg~~---------~~~~~~~~~~l~~~~~~~~~~p~VlDa-----dal~~l~~~~~l~ 107 (186)
+.++++.+++.. ..++.||- +|-| +...+.++.-|+.+++. ++|++|=. |.+.+|.....
T Consensus 74 ~~~~~l~~~~~~~~~vvaIGE-iGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~--~lPviIH~R~A~~d~~~iL~~~~~-- 148 (256)
T COG0084 74 EDLEELEQLAEHHPKVVAIGE-IGLDYYWDKEPDKERQEEVFEAQLELAKEL--NLPVIIHTRDAHEDTLEILKEEGA-- 148 (256)
T ss_pred HHHHHHHHHHhcCCCeEEEEe-cccCccccccccHHHHHHHHHHHHHHHHHc--CCCEEEEccccHHHHHHHHHhcCC--
Confidence 356677777774 89999995 4444 12456777778888888 99999754 34444433211
Q ss_pred cccCCCe---EecCCHHHHhhhcCC
Q psy9483 108 QDYRGPV---YLTPNKREYENLLSG 129 (186)
Q Consensus 108 ~~~~~~~---iiTPh~~E~~rL~~~ 129 (186)
+.+. .+|....+++++...
T Consensus 149 ---~~~gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 149 ---PVGGVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred ---CCCEEEEccCCCHHHHHHHHHc
Confidence 1112 467777777777653
No 145
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=28.64 E-value=3.6e+02 Score=23.94 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=42.3
Q ss_pred ccceeEEEecCCc-------hhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCH----------HHH
Q psy9483 9 TVTLSIYVCSEGA-------VPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEP----------LVQ 71 (186)
Q Consensus 9 GaGlv~v~~~~~~-------~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~----------~~~ 71 (186)
|++++.+=+.... ...++...|...+..=+--+.+...++.+ ..+|++.+|.|-|+.- .+.
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiGpGSicttR~~~Gvg~pql 198 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIGPGSVCTTRTKTGVGYPQL 198 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEcccCCCcccCceeCCCCcCHH
Confidence 4666666665552 23455566654332210011222333332 3699999996655442 233
Q ss_pred HHHHHHHHHHHhcCCCCCEEEec
Q psy9483 72 SNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 72 ~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
..+.+..+.+... +.|++.|.
T Consensus 199 tAv~~~a~aa~~~--~v~VIaDG 219 (343)
T TIGR01305 199 SAVIECADAAHGL--KGHIISDG 219 (343)
T ss_pred HHHHHHHHHhccC--CCeEEEcC
Confidence 4444444444334 68999997
No 146
>PRK06932 glycerate dehydrogenase; Provisional
Probab=28.47 E-value=1.1e+02 Score=26.43 Aligned_cols=9 Identities=22% Similarity=0.456 Sum_probs=8.0
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 280 nvilTPHia 288 (314)
T PRK06932 280 NLLITPHIA 288 (314)
T ss_pred CEEECCccc
Confidence 499999987
No 147
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=28.27 E-value=47 Score=28.63 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=29.0
Q ss_pred HHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEe
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVID 93 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlD 93 (186)
+.+.+..+++|.+||=-|+.+-+++..++..+++.+ ++|+||=
T Consensus 64 ~~i~~~~~~~~GvVVtHGTDTme~tA~~Ls~~l~~l-----~kPVVlT 106 (313)
T PF00710_consen 64 RAIQAALDDYDGVVVTHGTDTMEETAFFLSLLLDNL-----DKPVVLT 106 (313)
T ss_dssp HHHHHHHTTCSEEEEE--STTHHHHHHHHHHHEES------SSEEEEE
T ss_pred HHHHHHHHhcCeEEEecCchHHHHHHHHHHHHhcCC-----CCCEEEe
Confidence 445555566999999999887788877776555432 6888875
No 148
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=27.92 E-value=3.1e+02 Score=21.77 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=44.9
Q ss_pred chhhcccceeEEEecCCc------------------------hhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEE
Q psy9483 4 ILQCATVTLSIYVCSEGA------------------------VPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVL 59 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~------------------------~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aiv 59 (186)
...++|+|-++++=++.+ ...++...|+.-+..+... -+ -+.+.+.++.+|.++
T Consensus 39 ~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~-i~-~~~~~~~~~~~D~Vi 116 (202)
T TIGR02356 39 YLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER-VT-AENLELLINNVDLVL 116 (202)
T ss_pred HHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc-CC-HHHHHHHHhCCCEEE
Confidence 356889999988766632 2345566777655544111 01 123445677899776
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEE
Q psy9483 60 IGPGLGTEPLVQSNVISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 60 IGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~Vl 92 (186)
... .+.+++..+.+... +. ++|+|.
T Consensus 117 ~~~---d~~~~r~~l~~~~~---~~--~ip~i~ 141 (202)
T TIGR02356 117 DCT---DNFATRYLINDACV---AL--GTPLIS 141 (202)
T ss_pred ECC---CCHHHHHHHHHHHH---Hc--CCCEEE
Confidence 544 34555555555543 34 788743
No 149
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=27.57 E-value=81 Score=27.57 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=30.3
Q ss_pred HHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
+.+.+..+++|.+||=-|+.+-+++..++...++ . .+|+||=.
T Consensus 69 ~~I~~~~~~~dG~VVtHGTDTme~TA~~Ls~~l~----~--~kPVVlTG 111 (336)
T TIGR00519 69 EAVKKEYDDYDGFVITHGTDTMAYTAAALSFMLE----T--PKPVVFTG 111 (336)
T ss_pred HHHHHHHhcCCeEEEccCCchHHHHHHHHHHHcC----C--CCCEEEEC
Confidence 3344444569999999998877887776665553 2 68998744
No 150
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=27.36 E-value=54 Score=22.10 Aligned_cols=63 Identities=19% Similarity=0.333 Sum_probs=34.5
Q ss_pred EEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcccccccCCCeEecCCHH--HHhhhcC
Q psy9483 57 SVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKR--EYENLLS 128 (186)
Q Consensus 57 aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~l~~~~~~~~iiTPh~~--E~~rL~~ 128 (186)
.+++|.|++++--....+++.++. . +..+...+..... . +.......-.++||+.. ++.+..+
T Consensus 3 lvvC~~Gi~TS~~~~~~i~~~~~~---~--gi~~~~~~~~~~~---~-~~~~~~~D~il~~~~i~~~~~~~~~~ 67 (90)
T PF02302_consen 3 LVVCGSGIGTSLMVANKIKKALKE---L--GIEVEVSAGSILE---V-EEIADDADLILLTPQIAYEDLKEFAG 67 (90)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHH---T--TECEEEEEEETTT---H-HHHHTT-SEEEEEESSGGHHHHHHTT
T ss_pred EEECCChHHHHHHHHHHHHHHHHh---c--cCceEEEEecccc---c-ccccCCCcEEEEcCccchhhhhhhcC
Confidence 367888988665443555555543 3 5455444443110 0 11111123478899988 8888776
No 151
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=27.34 E-value=1.8e+02 Score=23.93 Aligned_cols=72 Identities=14% Similarity=0.328 Sum_probs=45.5
Q ss_pred ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCcc------cccccCCCeEecCCHHHHhhh
Q psy9483 53 NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPG------LIQDYRGPVYLTPNKREYENL 126 (186)
Q Consensus 53 ~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~~------l~~~~~~~~iiTPh~~E~~rL 126 (186)
...|++.||==.+.+ ++.+-+.++++..++ ..|+||=|.....+....| +++. .+|-.|+.+..|...+
T Consensus 24 ~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~---~~Pvilfp~~~~~i~~~aDa~l~~svlns-~n~~~i~g~~~~~~~~ 98 (219)
T cd02812 24 SGTDAIMVGGSDGVS-STLDNVVRLIKRIRR---PVPVILFPSNPEAVSPGADAYLFPSVLNS-GDPYWIIGAQAEAAPE 98 (219)
T ss_pred cCCCEEEECCccchh-hhHHHHHHHHHHhcC---CCCEEEeCCCccccCcCCCEEEEEeeecC-CCchHHHHHHHHHHHH
Confidence 348999999755444 344444455554311 3899998877766655543 3332 3567888888888877
Q ss_pred cCC
Q psy9483 127 LSG 129 (186)
Q Consensus 127 ~~~ 129 (186)
++.
T Consensus 99 ~~~ 101 (219)
T cd02812 99 VGK 101 (219)
T ss_pred hcc
Confidence 653
No 152
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=27.13 E-value=46 Score=29.19 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=17.1
Q ss_pred hHHHHHHhcccCcEEEEccCCC
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLG 65 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg 65 (186)
...++.+.++++|.|+||||-.
T Consensus 179 a~~eaveAI~~AD~IviGPgSl 200 (323)
T COG0391 179 AAPEAVEAIKEADLIVIGPGSL 200 (323)
T ss_pred CCHHHHHHHHhCCEEEEcCCcc
Confidence 3456667788899999999943
No 153
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=27.02 E-value=88 Score=28.09 Aligned_cols=9 Identities=44% Similarity=0.519 Sum_probs=7.8
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 286 nvilTPHia 294 (409)
T PRK11790 286 NVILTPHIG 294 (409)
T ss_pred CEEECCcCC
Confidence 499999976
No 154
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=26.80 E-value=2.1e+02 Score=24.12 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=30.8
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHH---HHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLV---QSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~---~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
.++++.+.+.+.|++.||- +|-++-+ .+.+++=|..+++. +.|+|+--
T Consensus 84 ~l~~L~~~l~~e~VvAiGE-iGLe~~t~~E~evf~~QL~LA~e~--dvPviVHT 134 (254)
T COG1099 84 VLEELEELLSNEDVVAIGE-IGLEEATDEEKEVFREQLELAREL--DVPVIVHT 134 (254)
T ss_pred HHHHHHhhcccCCeeEeee-cccccCCHHHHHHHHHHHHHHHHc--CCcEEEeC
Confidence 3566677777888999986 5544322 34444445566777 89988743
No 155
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=26.63 E-value=96 Score=28.00 Aligned_cols=44 Identities=16% Similarity=0.290 Sum_probs=30.5
Q ss_pred HHHHHhccc-CcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 46 DHIMYWMNR-MHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 46 ~~~~~~~~~-~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
+.+.+..++ +|.+||=-|+.+-+++..++.-.++.. ++|+||=.
T Consensus 130 ~~I~~~~~~~~dGvVVtHGTDTM~yTA~aLs~~l~~~-----~kPVVlTG 174 (404)
T TIGR02153 130 EAVAKALKEGADGVVVAHGTDTMAYTAAALSFMFETL-----PVPVVLVG 174 (404)
T ss_pred HHHHHHhhcCCCcEEEecCChhHHHHHHHHHHHhhCC-----CCCEEEEC
Confidence 344444444 899999999887788877776666542 67888743
No 156
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.60 E-value=2e+02 Score=22.30 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=39.4
Q ss_pred hhhhhcCCceEEecccCC--CcchHHHHHHhc--ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEe-cccc
Q psy9483 23 PILKNYSPELIVLPHYLD--RNDSVDHIMYWM--NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVID-ADGL 97 (186)
Q Consensus 23 ~~~~~~~Pe~~v~~~~~~--~~~~~~~~~~~~--~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlD-adal 97 (186)
..++...|.+-+...... +++..+++.+.+ .++|.+++|+|.+.-| ..+.+..+.+ +.++++= ..++
T Consensus 66 ~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE---~~~~~~~~~l-----~~~v~i~vG~~~ 137 (172)
T PF03808_consen 66 ANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQE---RWIARHRQRL-----PAGVIIGVGGAF 137 (172)
T ss_pred HHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH---HHHHHHHHHC-----CCCEEEEECchh
Confidence 366788888866554111 122234444443 4699999999976433 4444443332 4454443 3445
Q ss_pred cccccC
Q psy9483 98 KLVAEH 103 (186)
Q Consensus 98 ~~l~~~ 103 (186)
+.++..
T Consensus 138 d~~aG~ 143 (172)
T PF03808_consen 138 DFLAGK 143 (172)
T ss_pred hhhccC
Confidence 555543
No 157
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=25.51 E-value=1e+02 Score=26.87 Aligned_cols=9 Identities=44% Similarity=0.519 Sum_probs=7.6
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 276 nV~~TPHia 284 (324)
T COG0111 276 NVILTPHIG 284 (324)
T ss_pred CeEECCccc
Confidence 389999987
No 158
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.50 E-value=2e+02 Score=23.32 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=22.3
Q ss_pred ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCE
Q psy9483 53 NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPL 90 (186)
Q Consensus 53 ~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~ 90 (186)
.++|.++|+||=|+..+. ....++++.+ .. ++|+
T Consensus 44 ~~pd~iviSPGPG~P~d~-G~~~~~i~~~-~~--~~Pi 77 (191)
T COG0512 44 LKPDAIVISPGPGTPKDA-GISLELIRRF-AG--RIPI 77 (191)
T ss_pred cCCCEEEEcCCCCChHHc-chHHHHHHHh-cC--CCCE
Confidence 358999999998876543 3344566654 22 5675
No 159
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=25.38 E-value=2.4e+02 Score=20.48 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=20.6
Q ss_pred hHHHHHHhcccCcEEEEccCCCCCHHHHHHH
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQSNV 74 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGlg~~~~~~~~~ 74 (186)
.++.+.+.....|.=.|-||+| |.|+.++
T Consensus 24 ~v~~i~~~~gI~diN~IKPGIg--EaTRvLL 52 (100)
T PF15608_consen 24 EVERIAERYGISDINLIKPGIG--EATRVLL 52 (100)
T ss_pred HHHHHHHHhCCCCcccccCChh--HHHHHHH
Confidence 4566666777788899999987 4455444
No 160
>PRK06247 pyruvate kinase; Provisional
Probab=25.27 E-value=3.3e+02 Score=25.26 Aligned_cols=84 Identities=11% Similarity=0.123 Sum_probs=49.7
Q ss_pred hhhcccceeEEEecCCchhh--hhhcCCc-e-EEecccCCCcchHHHHHHhcccCcEEEEccCCCCC----HHHHHHHHH
Q psy9483 5 LQCATVTLSIYVCSEGAVPI--LKNYSPE-L-IVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTE----PLVQSNVIS 76 (186)
Q Consensus 5 ~~r~GaGlv~v~~~~~~~~~--~~~~~Pe-~-~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~----~~~~~~~~~ 76 (186)
+.+.|++++.+=..++...+ ++.+..+ . ++.-+ ++.+.++.+.+.++.+|++.||+|=..- ++.....++
T Consensus 182 ~~~~~vD~ia~SFVr~a~Di~~~r~~l~~~~~iiaKI--Et~eav~nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ 259 (476)
T PRK06247 182 ALELGVDWVALSFVQRPEDVEEVRKIIGGRVPVMAKI--EKPQAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKR 259 (476)
T ss_pred HHHcCCCEEEECCCCCHHHHHHHHHHhhhcCeEEEEE--CCHHHHHhHHHHHHHcCEEEEccchhccccCHHHHHHHHHH
Confidence 34567777766666665442 2333322 2 22222 3344566666667779999999982211 344556667
Q ss_pred HHHHHHhcCCCCCEEE
Q psy9483 77 IIHKLKAANLNVPLVI 92 (186)
Q Consensus 77 ~l~~~~~~~~~~p~Vl 92 (186)
+++.+++. ++|+++
T Consensus 260 ii~~~~~~--gkpvI~ 273 (476)
T PRK06247 260 IIRAARRA--GKPVVV 273 (476)
T ss_pred HHHHHHHh--CCCEEE
Confidence 77777777 788765
No 161
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.14 E-value=4.3e+02 Score=23.93 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=43.7
Q ss_pred chhhcccceeEEEecCC----c---hhhhhhcCCce--EEecccCCCcchHHHHHHhcc-cCcEEEEccCCCCC------
Q psy9483 4 ILQCATVTLSIYVCSEG----A---VPILKNYSPEL--IVLPHYLDRNDSVDHIMYWMN-RMHSVLIGPGLGTE------ 67 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~----~---~~~~~~~~Pe~--~v~~~~~~~~~~~~~~~~~~~-~~~aivIGpGlg~~------ 67 (186)
+...+|++++.+=+... . ...++...|+. |+-.+ . ..++.....+ .+|+|.+|.|-|+.
T Consensus 160 ~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V-~----T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~ 234 (404)
T PRK06843 160 ELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI-V----TKEAALDLISVGADCLKVGIGPGSICTTRIV 234 (404)
T ss_pred HHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec-C----CHHHHHHHHHcCCCEEEECCCCCcCCcceee
Confidence 45678999888655433 1 22455667765 33333 1 1233333332 59999988754431
Q ss_pred ----HHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 68 ----PLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 68 ----~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
......+.++-+.+++. +.|+|-|.
T Consensus 235 ~g~g~p~ltai~~v~~~~~~~--~vpVIAdG 263 (404)
T PRK06843 235 AGVGVPQITAICDVYEVCKNT--NICIIADG 263 (404)
T ss_pred cCCCCChHHHHHHHHHHHhhc--CCeEEEeC
Confidence 11223333322223334 78998887
No 162
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=24.90 E-value=4.1e+02 Score=22.95 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=42.3
Q ss_pred cchhhcccceeEEEecC-------CchhhhhhcCCceEEecccCCCcchHHHHHHhc-ccCcEEEEc--cCCC---C---
Q psy9483 3 GILQCATVTLSIYVCSE-------GAVPILKNYSPELIVLPHYLDRNDSVDHIMYWM-NRMHSVLIG--PGLG---T--- 66 (186)
Q Consensus 3 ~~~~r~GaGlv~v~~~~-------~~~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~-~~~~aivIG--pGlg---~--- 66 (186)
++++.+|+..+.+-+.. +....++...|++.+.--.-.+ .+...... ..+|.+++| ||.. +
T Consensus 100 ~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t---~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~ 176 (325)
T cd00381 100 EALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVT---AEAARDLIDAGADGVKVGIGPGSICTTRIVT 176 (325)
T ss_pred HHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCC---HHHHHHHHhcCCCEEEECCCCCcCcccceeC
Confidence 35677888887764421 1233445566754332110111 23333332 359999985 4321 0
Q ss_pred --CHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 67 --EPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 67 --~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
.......+.++.+.+++. +.|+|-|.
T Consensus 177 g~g~p~~~~i~~v~~~~~~~--~vpVIA~G 204 (325)
T cd00381 177 GVGVPQATAVADVAAAARDY--GVPVIADG 204 (325)
T ss_pred CCCCCHHHHHHHHHHHHhhc--CCcEEecC
Confidence 111234455554444444 68988665
No 163
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=24.71 E-value=1.2e+02 Score=26.91 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=30.8
Q ss_pred HHHHHHhcccC--cEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 45 VDHIMYWMNRM--HSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 45 ~~~~~~~~~~~--~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
.+.+.+.++.. |.+||==|+.+-+++.-++.-.++ . ++|+||=.
T Consensus 89 a~~I~~~~~~~~~dGvVItHGTDTmeeTA~~L~l~l~----~--~kPVVlTG 134 (351)
T COG0252 89 AEAINEALDDGDVDGVVITHGTDTMEETAFFLSLTLN----T--PKPVVLTG 134 (351)
T ss_pred HHHHHHHhccCCCCeEEEeCCCchHHHHHHHHHHHhc----C--CCCEEEeC
Confidence 34455555444 999999998877888776665554 2 78999854
No 164
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=24.64 E-value=3.4e+02 Score=26.08 Aligned_cols=83 Identities=11% Similarity=-0.038 Sum_probs=49.2
Q ss_pred chhhcccceeEEEecCCch----hhhhhc-----CCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCH------
Q psy9483 4 ILQCATVTLSIYVCSEGAV----PILKNY-----SPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEP------ 68 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~----~~~~~~-----~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~------ 68 (186)
.+.++||.+|++.+|..-. ..++.. .|=-+|-++ +=+. ....+.++.+|.+=||||---+.
T Consensus 49 ~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADI-HF~~---~~A~~a~~~v~kiRINPGN~~~~~k~f~~ 124 (611)
T PRK02048 49 RIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADV-HFNP---KVADVAAQYAEKVRINPGNYVDPGRTFKK 124 (611)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEec-CCCc---HHHHHHHHhhCCEEECCCcCCCccccccc
Confidence 4678999999999987632 233333 233344343 2111 22233445599999999965431
Q ss_pred -------------HHHHHHHHHHHHHHhcCCCCCEEE
Q psy9483 69 -------------LVQSNVISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 69 -------------~~~~~~~~~l~~~~~~~~~~p~Vl 92 (186)
...+-+..+++.+++. ++|+=+
T Consensus 125 ~~Ytdeey~~el~~i~e~~~~~v~~ak~~--~~~iRI 159 (611)
T PRK02048 125 LEYTDEEYAQEIQKIRDRFVPFLNICKEN--HTAIRI 159 (611)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHC--CCCEEE
Confidence 1234566677777777 788754
No 165
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.44 E-value=1.9e+02 Score=24.83 Aligned_cols=32 Identities=9% Similarity=-0.022 Sum_probs=18.1
Q ss_pred cchhhccccee---EEEecCCchhhhhhcCCceEE
Q psy9483 3 GILQCATVTLS---IYVCSEGAVPILKNYSPELIV 34 (186)
Q Consensus 3 ~~~~r~GaGlv---~v~~~~~~~~~~~~~~Pe~~v 34 (186)
++|++.|+.++ .-+..++....++.+..-+++
T Consensus 104 ~~AL~~GadiINDI~g~~d~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 104 RESAKAGAHIINDIRSLSEPGALEAAAETGLPVCL 138 (282)
T ss_pred HHHHHcCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 56788888887 444333445555555444433
No 166
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=24.26 E-value=98 Score=28.74 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=7.9
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 272 nvilTPHia 280 (526)
T PRK13581 272 NVVVTPHLG 280 (526)
T ss_pred CeeEcCccc
Confidence 499999987
No 167
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=23.93 E-value=1.5e+02 Score=25.66 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=27.7
Q ss_pred cCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEe
Q psy9483 54 RMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVID 93 (186)
Q Consensus 54 ~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlD 93 (186)
.+|.+||=-|+.+-+++.-++...++.+ ++|+|+=
T Consensus 77 ~~dG~VVtHGTDTmeeTA~~Ls~~l~~l-----~kPVVlT 111 (323)
T smart00870 77 GYDGVVVTHGTDTLEETAYFLSLTLDSL-----DKPVVLT 111 (323)
T ss_pred CCCEEEEecCCccHHHHHHHHHHHhhcC-----CCCEEEE
Confidence 5899999999888888877776666543 6898875
No 168
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.67 E-value=3.2e+02 Score=26.77 Aligned_cols=83 Identities=10% Similarity=0.003 Sum_probs=48.5
Q ss_pred chhhcccceeEEEecCCch-h---hhhh-----cCCceEEecccCCCcchHHHHHHhcccCcEEEEccCCCCCH------
Q psy9483 4 ILQCATVTLSIYVCSEGAV-P---ILKN-----YSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEP------ 68 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~~-~---~~~~-----~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aivIGpGlg~~~------ 68 (186)
.+..+||.+|++.+|..-. . .++. ..+=-+|-++ +=+ .....+.++.+|.+=||||---+.
T Consensus 118 ~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADI-HF~---~~~Al~a~~~vdkiRINPGN~~~~~k~F~~ 193 (733)
T PLN02925 118 RIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADI-HFA---PSVALRVAECFDKIRVNPGNFADRRAQFEK 193 (733)
T ss_pred HHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEec-CCC---HHHHHHHHHhcCCeEECCcccCCccccccc
Confidence 4678999999999987642 2 2222 1333344343 111 223334455699999999964433
Q ss_pred -------------HHHHHHHHHHHHHHhcCCCCCEEE
Q psy9483 69 -------------LVQSNVISIIHKLKAANLNVPLVI 92 (186)
Q Consensus 69 -------------~~~~~~~~~l~~~~~~~~~~p~Vl 92 (186)
...+-+..+++.+++. ++|+=+
T Consensus 194 ~eYtdeeY~~Ele~i~e~f~~~v~~ak~~--~~~iRI 228 (733)
T PLN02925 194 LEYTEDDYQKELEHIEEVFTPLVEKCKKY--GRAMRI 228 (733)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHC--CCCEEE
Confidence 1223344567777777 777754
No 169
>PLN02306 hydroxypyruvate reductase
Probab=23.60 E-value=1.6e+02 Score=26.26 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=7.8
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 314 NVilTPHia 322 (386)
T PLN02306 314 NAVVVPHIA 322 (386)
T ss_pred CEEECCccc
Confidence 499999976
No 170
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=23.53 E-value=3.6e+02 Score=22.44 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=28.6
Q ss_pred CCcchHHHHHHhc--ccCcEEEEccC-------C---CCCHHHHHHHHHHHHHHHhcCCCCCE
Q psy9483 40 DRNDSVDHIMYWM--NRMHSVLIGPG-------L---GTEPLVQSNVISIIHKLKAANLNVPL 90 (186)
Q Consensus 40 ~~~~~~~~~~~~~--~~~~aivIGpG-------l---g~~~~~~~~~~~~l~~~~~~~~~~p~ 90 (186)
++...++.+.+.+ +..|.+.|||+ . ...++....+.+++..+++. ++++
T Consensus 146 Et~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~--G~~~ 206 (249)
T TIGR03239 146 ESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAH--GKPC 206 (249)
T ss_pred CCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHc--CCCE
Confidence 3333344444443 66999999973 2 23346666666777666665 5554
No 171
>PLN02928 oxidoreductase family protein
Probab=23.36 E-value=1.2e+02 Score=26.66 Aligned_cols=9 Identities=33% Similarity=0.504 Sum_probs=7.9
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 305 nviiTPHia 313 (347)
T PLN02928 305 NVIITPHVA 313 (347)
T ss_pred CEEECCcCC
Confidence 489999987
No 172
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=22.75 E-value=1.1e+02 Score=25.95 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=31.6
Q ss_pred HHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccccCc
Q psy9483 49 MYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHP 104 (186)
Q Consensus 49 ~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~~~~ 104 (186)
.+.++.+.++|+|.| |-..+..+.+. +. .. +.-.++|.|-+.....+.
T Consensus 25 lekl~~~~V~VvGiG-GVGSw~veALa---Rs--Gi--g~itlID~D~v~vTN~NR 72 (263)
T COG1179 25 LEKLKQAHVCVVGIG-GVGSWAVEALA---RS--GI--GRITLIDMDDVCVTNTNR 72 (263)
T ss_pred HHHHhhCcEEEEecC-chhHHHHHHHH---Hc--CC--CeEEEEecccccccccch
Confidence 446778999999998 55665544332 21 12 455889999887665553
No 173
>PF13289 SIR2_2: SIR2-like domain
Probab=22.70 E-value=2.5e+02 Score=20.13 Aligned_cols=34 Identities=12% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHH
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHK 80 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~ 80 (186)
+.+.+.+.....++||.|+. ++....++..+.+.
T Consensus 78 ~~l~~~l~~~~~lfiGys~~-D~~i~~~l~~~~~~ 111 (143)
T PF13289_consen 78 NFLRSLLRSKTLLFIGYSFN-DPDIRQLLRSALEN 111 (143)
T ss_pred HHHHHHHcCCCEEEEEECCC-CHHHHHHHHHHHHh
Confidence 34455667789999999976 55555666555543
No 174
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=22.35 E-value=5e+02 Score=23.04 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=46.0
Q ss_pred hhhcccceeEEEecCCch-------hhhhhcCCceEEecccCCCcchHHHHHHhc-ccCcEEEEccCCCCCHH-------
Q psy9483 5 LQCATVTLSIYVCSEGAV-------PILKNYSPELIVLPHYLDRNDSVDHIMYWM-NRMHSVLIGPGLGTEPL------- 69 (186)
Q Consensus 5 ~~r~GaGlv~v~~~~~~~-------~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~-~~~~aivIGpGlg~~~~------- 69 (186)
...+|++++.+=+..... ..++...|++-+..=+-.+ .+...+++ .-+|++.+|.|=|.--.
T Consensus 116 L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T---~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~Gv 192 (352)
T PF00478_consen 116 LVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVT---YEGAKDLIDAGADAVKVGIGPGSICTTREVTGV 192 (352)
T ss_dssp HHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-S---HHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSB
T ss_pred HHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCC---HHHHHHHHHcCCCEEEEeccCCccccccccccc
Confidence 455788888776655533 2455777754332210011 22333333 24999999998775432
Q ss_pred ---HHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 70 ---VQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 70 ---~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
+...+.+.-+.+++. ++|+|-|.
T Consensus 193 G~PQ~tAv~~~a~~a~~~--~v~iIADG 218 (352)
T PF00478_consen 193 GVPQLTAVYECAEAARDY--GVPIIADG 218 (352)
T ss_dssp SCTHHHHHHHHHHHHHCT--TSEEEEES
T ss_pred CCcHHHHHHHHHHHhhhc--cCceeecC
Confidence 233344544445556 79999998
No 175
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=21.99 E-value=1.2e+02 Score=21.60 Aligned_cols=39 Identities=10% Similarity=0.354 Sum_probs=25.1
Q ss_pred EEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEecccccccc
Q psy9483 58 VLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVA 101 (186)
Q Consensus 58 ivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDadal~~l~ 101 (186)
.++|-|+|++--....++++++. + +.|.-+|....+...
T Consensus 6 ~aCG~GvgSS~~ik~kve~~l~~---~--gi~~~~~~~~v~~~~ 44 (93)
T COG3414 6 AACGNGVGSSTMIKMKVEEVLKE---L--GIDVDVEQCAVDEIK 44 (93)
T ss_pred EECCCCccHHHHHHHHHHHHHHH---c--CCCceeeeEEecccc
Confidence 46888888776556667777654 4 777666665554433
No 176
>PRK00549 competence damage-inducible protein A; Provisional
Probab=21.98 E-value=81 Score=28.40 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=28.1
Q ss_pred HHHHHhcccCcEEEEccCCCCC--HHHHHHHHHHHHHHHhcCCCCCEEEeccccc
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTE--PLVQSNVISIIHKLKAANLNVPLVIDADGLK 98 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~--~~~~~~~~~~l~~~~~~~~~~p~VlDadal~ 98 (186)
+.+.+..+++|.|++-=|+|.. +-+.+.+.+++ +.++++|+.++.
T Consensus 51 ~~l~~a~~~~DlVItTGGlGpt~dD~t~ea~a~~~--------g~~l~~~~~~~~ 97 (414)
T PRK00549 51 SALEIAEERSDLIITTGGLGPTKDDLTKETVAKFL--------GRELVLDEEALA 97 (414)
T ss_pred HHHHHhccCCCEEEECCCCCCCCCccHHHHHHHHh--------CCCCcCCHHHHH
Confidence 3444455789999986555543 44444444432 678888887765
No 177
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=21.71 E-value=5.4e+02 Score=22.50 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=47.6
Q ss_pred chhhcccceeEEEecCCc------------------------hhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEEE
Q psy9483 4 ILQCATVTLSIYVCSEGA------------------------VPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVL 59 (186)
Q Consensus 4 ~~~r~GaGlv~v~~~~~~------------------------~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~aiv 59 (186)
...++|.|-++++=.+.+ ...++...|+.-+..+... - ..+...++++.+|.|+
T Consensus 46 ~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~-i-~~~~~~~~~~~~DvVv 123 (355)
T PRK05597 46 YLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR-L-TWSNALDELRDADVIL 123 (355)
T ss_pred HHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee-c-CHHHHHHHHhCCCEEE
Confidence 356788888888765542 2345567788766654211 0 1123445677899888
Q ss_pred EccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEec
Q psy9483 60 IGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA 94 (186)
Q Consensus 60 IGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDa 94 (186)
-... +.+++..+.++.. +. ++|+|.=+
T Consensus 124 d~~d---~~~~r~~~n~~c~---~~--~ip~v~~~ 150 (355)
T PRK05597 124 DGSD---NFDTRHLASWAAA---RL--GIPHVWAS 150 (355)
T ss_pred ECCC---CHHHHHHHHHHHH---Hc--CCCEEEEE
Confidence 7763 4455555555443 34 78987544
No 178
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=20.93 E-value=1.3e+02 Score=26.05 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=29.4
Q ss_pred HHHHHhcccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEe
Q psy9483 46 DHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVID 93 (186)
Q Consensus 46 ~~~~~~~~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlD 93 (186)
+.+.+...++|.+||=-|+.+-+++..++...++ . .+|+|+=
T Consensus 70 ~~I~~~~~~~dGiVVtHGTDTmeeTA~~L~~~l~----~--~kPVVlT 111 (323)
T cd00411 70 KDINELYDSYDGFVITHGTDTMEETAYFLSLTLE----N--DKPVVLT 111 (323)
T ss_pred HHHHHHHHhcCcEEEEcCcccHHHHHHHHHHHhc----C--CCCEEEE
Confidence 3344444569999999998877888776654443 2 6899874
No 179
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=20.89 E-value=2.6e+02 Score=21.63 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=38.2
Q ss_pred hhhhcCCceEEecccCC--CcchHHHHHHhc--ccCcEEEEccCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEeccc-cc
Q psy9483 24 ILKNYSPELIVLPHYLD--RNDSVDHIMYWM--NRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADG-LK 98 (186)
Q Consensus 24 ~~~~~~Pe~~v~~~~~~--~~~~~~~~~~~~--~~~~aivIGpGlg~~~~~~~~~~~~l~~~~~~~~~~p~VlDada-l~ 98 (186)
.++...|.+-+...... ..+..+++.+.+ ..+|.|++|+|.+.-| .++.+..+. . +.++++=-.| ++
T Consensus 65 ~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE---~~~~~~~~~---l--~~~v~~~vG~~~d 136 (171)
T cd06533 65 RLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQE---LWIARHKDR---L--PVPVAIGVGGSFD 136 (171)
T ss_pred HHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH---HHHHHHHHH---C--CCCEEEEeceeeE
Confidence 46677888855543111 111112222222 4699999999977544 344443332 2 4667665433 55
Q ss_pred ccccC
Q psy9483 99 LVAEH 103 (186)
Q Consensus 99 ~l~~~ 103 (186)
.++.+
T Consensus 137 ~~aG~ 141 (171)
T cd06533 137 FLAGT 141 (171)
T ss_pred eccCC
Confidence 55544
No 180
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=20.86 E-value=68 Score=27.85 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=16.5
Q ss_pred hHHHHHHhcccCcEEEEccCC
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGL 64 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGl 64 (186)
...++.+.++.+|.|+||||-
T Consensus 172 a~peal~AI~~AD~IIlGPgs 192 (297)
T TIGR01819 172 IAPKVLEAIRKEDNILIGPSN 192 (297)
T ss_pred CCHHHHHHHHhCCEEEECCCc
Confidence 345666777889999999983
No 181
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.25 E-value=4.6e+02 Score=21.44 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=42.3
Q ss_pred chhhcccceeEEEe-c----CCc---hhhhhhcCCceEEecccCCCcchHHHHHHhcccCcEE---EEccCCCCCHHHHH
Q psy9483 4 ILQCATVTLSIYVC-S----EGA---VPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSV---LIGPGLGTEPLVQS 72 (186)
Q Consensus 4 ~~~r~GaGlv~v~~-~----~~~---~~~~~~~~Pe~~v~~~~~~~~~~~~~~~~~~~~~~ai---vIGpGlg~~~~~~~ 72 (186)
.+..+|+..+++-. | +.. ...++.+--+.++.-- .. ...+++...++..|-+ -++||.|.. ...
T Consensus 96 ~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~-p~--T~~e~l~~~~~~~~~~l~msv~~~~g~~--~~~ 170 (244)
T PRK13125 96 MARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTS-PK--FPDLLIHRLSKLSPLFIYYGLRPATGVP--LPV 170 (244)
T ss_pred HHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEEC-CC--CCHHHHHHHHHhCCCEEEEEeCCCCCCC--chH
Confidence 56788888888752 1 121 2233444444433211 11 1234555555555554 477888753 222
Q ss_pred HHHHHHHHHHhcCCCCCEEEecc
Q psy9483 73 NVISIIHKLKAANLNVPLVIDAD 95 (186)
Q Consensus 73 ~~~~~l~~~~~~~~~~p~VlDad 95 (186)
.+.+.++.+++...+.|+++|..
T Consensus 171 ~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 171 SVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHhcCCCCEEEeCC
Confidence 23333444443311357777653
No 182
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=20.17 E-value=71 Score=27.80 Aligned_cols=21 Identities=19% Similarity=0.531 Sum_probs=16.5
Q ss_pred hHHHHHHhcccCcEEEEccCC
Q psy9483 44 SVDHIMYWMNRMHSVLIGPGL 64 (186)
Q Consensus 44 ~~~~~~~~~~~~~aivIGpGl 64 (186)
...++.+.+..+|.|++|||=
T Consensus 164 ~~~~~l~AI~~ADlIvlgPGS 184 (309)
T cd07044 164 PSREVLEAIEKADNIVIGPGS 184 (309)
T ss_pred CCHHHHHHHHhCCEEEECCCc
Confidence 345666777889999999993
No 183
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=20.16 E-value=1.4e+02 Score=25.89 Aligned_cols=9 Identities=22% Similarity=0.467 Sum_probs=8.0
Q ss_pred CeEecCCHH
Q psy9483 113 PVYLTPNKR 121 (186)
Q Consensus 113 ~~iiTPh~~ 121 (186)
.+++|||.+
T Consensus 290 nvilTPHia 298 (330)
T PRK12480 290 RILVTPHIA 298 (330)
T ss_pred CEEECCccc
Confidence 499999987
Done!