RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9483
(186 letters)
>3rss_A Putative uncharacterized protein; unknown function,
ADP/ATP-dependent NAD(P)H-hydrate dehydrat lyase; HET:
NAP; 1.95A {Thermotoga maritima} PDB: 3rrb_A* 2ax3_A*
3rre_A* 3rrj_A* 3rs8_A* 3rs9_A* 3rsf_A* 3rsg_A* 3rrf_A*
3rsq_A* 3rt7_A* 3rt9_A* 3rta_A* 3rtb_A* 3rtc_A* 3rtd_A*
3rte_A* 3rtg_A* 3ru2_A* 3ru3_A*
Length = 502
Score = 90.3 bits (225), Expect = 9e-22
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 20/183 (10%)
Query: 10 VTLSIYVCSEGAVPILKNYSPELIVLP----HYLDRNDSVDHIMYWMNRMHSVLIGPGLG 65
V L I + PELI +P ++ + + V IGPGLG
Sbjct: 275 VKL---AVPFPQNLIATSRFPELISVPIDTEKGFFSLQNLQECLELSKDVDVVAIGPGLG 331
Query: 66 TEPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYEN 125
V+ V + L P VIDAD + ++ ++++ + P LTP+ E
Sbjct: 332 NNEHVREFVNEFL-----KTLEKPAVIDADAINVLDTS--VLKERKSPAVLTPHPGEMAR 384
Query: 126 LL--SGSEV----NAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRRCGGQGDL 179
L+ + +V A + +++K ++ + + +L GN+ GG GD+
Sbjct: 385 LVKKTVGDVKYNYELAEEFAKENDCVLVLKSATTIVTDGEKTLFNITGNTGLSKGGSGDV 444
Query: 180 VAG 182
+ G
Sbjct: 445 LTG 447
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer
sandwich, unknown function; 2.50A {Streptococcus mutans}
Length = 311
Score = 85.7 bits (213), Expect = 1e-20
Identities = 39/179 (21%), Positives = 70/179 (39%), Gaps = 18/179 (10%)
Query: 10 VTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPL 69
VT+ + + L ++ PE + D + + VL+GPGL + L
Sbjct: 89 VTV---ATHKDNITALHSHLPEAMAFD-----MVEKDRLSEQITAADVVLMGPGLAEDDL 140
Query: 70 VQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL-- 127
Q+ + +A L+ID + L+A+ I + LTP+++E+E L
Sbjct: 141 AQTTFDVV---WQAIEPKQTLIIDGSAINLLAKRKPAIW-PTKQIILTPHQKEWERLSGL 196
Query: 128 SGSEV----NAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRRCGGQGDLVAG 182
+ E + ++ K H+ I Q + G ++ GG GD +AG
Sbjct: 197 TIPEQIEAATQTALAHFPKETILVAKSHQTKIYQGQKIGHIQVGGPYQATGGMGDTLAG 255
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like
superfamily, structur genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus
faecalis} PDB: 2r3e_A
Length = 310
Score = 80.7 bits (200), Expect = 8e-19
Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 18/178 (10%)
Query: 10 VTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPL 69
T+ + L PE +V+ + + + + +LIGPGLG +
Sbjct: 75 TTV---ITDVKNHGPLHARCPEAMVVGF-----EETVLLTNVVEQADVILIGPGLGLDAT 126
Query: 70 VQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSG 129
Q + + L L+ID + L ++ + Y V TP++ E++ L
Sbjct: 127 AQQILKMV---LAQHQKQQWLIIDGSAITLFSQGNFSLT-YPEKVVFTPHQMEWQRLS-H 181
Query: 130 SEV-----NAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRRCGGQGDLVAG 182
+ +Q T+++K H I + GN GG GD +AG
Sbjct: 182 LPIEQQTLANNQRQQAKLGSTIVLKSHRTTIFHAGEPFQNTGGNPGMATGGTGDTLAG 239
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics,
PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis}
PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A*
3rqq_A* 3rqx_A* 1kyh_A
Length = 279
Score = 69.0 bits (170), Expect = 1e-14
Identities = 37/182 (20%), Positives = 63/182 (34%), Gaps = 28/182 (15%)
Query: 10 VTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPL 69
+ + SE +P++ PE ++ IGPGL
Sbjct: 61 LVI---GTSENVIPLIVPVLPEATYWRD----GWKKAADAQLEETYRAIAIGPGLPQTES 113
Query: 70 VQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL-- 127
VQ V ++ + P+++DA L GPV LTP+ E+ +
Sbjct: 114 VQQAVDHVL------TADCPVILDAGALAKRT-----YPKREGPVILTPHPGEFFRMTGV 162
Query: 128 SGSEVNAAYIK-----QGHPNLTVIVKGHEDVI--KNNQISLTCKEGNSWRRCGGQGDLV 180
+E+ + +++KG++ VI + L GN GG GD +
Sbjct: 163 PVNELQKKRAEYAKEWAAQLQTVIVLKGNQTVIAFPDGDCWL-NPTGNGALAKGGTGDTL 221
Query: 181 AG 182
G
Sbjct: 222 TG 223
>3k5w_A Carbohydrate kinase; 11206B,helicobacter pylori,PSI-II, NYSGXRC, ,
structural genomics, protein structure initiative; 2.60A
{Helicobacter pylori}
Length = 475
Score = 63.3 bits (155), Expect = 3e-12
Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 41/174 (23%)
Query: 23 PILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLK 82
I N P +V N + + +G GL P + + +
Sbjct: 273 EITSNNKPLELVFCENFP------------NLLSAFALGMGLENIPKDFNRWLEL----- 315
Query: 83 AANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL-------SGSEVNAA 135
P V+DA ++Q LTP+ +E+ +LL S E+
Sbjct: 316 -----APCVLDAGVFYHKE----ILQALEKEAVLTPHPKEFLSLLNLVGINISMLELLDN 366
Query: 136 YIK------QGHPNLTVIVKGHEDVI-KNNQISLTCKEGNSWRRCGGQGDLVAG 182
++ Q +P + +++KG +I Q+ + G+ G GD++AG
Sbjct: 367 KLEIARDFSQKYPKVVLLLKGANTLIAHQGQVFI-NILGSVALAKAGSGDVLAG 419
>1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase,
structural genomics, riken structural
genomics/proteomics initiative; 1.85A {Pyrococcus
horikoshii} SCOP: c.72.1.2 PDB: 3hpd_A
Length = 265
Score = 46.4 bits (110), Expect = 1e-06
Identities = 39/194 (20%), Positives = 60/194 (30%), Gaps = 42/194 (21%)
Query: 7 CATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGT 66
A L++ GA P++ + EL + + +V+I G
Sbjct: 30 TANALLAL-----GASPVMAHAEEELEEM----------------IRLADAVVINIGTLD 68
Query: 67 EPLVQSNVISIIHKLKAANLNVPLVIDADGLKLVAEHPGLIQDY--RGPVYLTPNKREYE 124
+S V + A L P+V+D G + + RG L N E
Sbjct: 69 SGWRRSMVKATEI---ANELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNFGEIS 125
Query: 125 NLL----------SGSEVNAAYIKQGHP-----NLTVIVKGHEDVIKNNQISLTCKEGNS 169
LL S K N TV V G D + + + + G+
Sbjct: 126 ALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGHE 185
Query: 170 W-RRCGGQGDLVAG 182
R G G +VA
Sbjct: 186 LLGRVTGTGCMVAA 199
>1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A
{Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A
1esj_A 1esq_A*
Length = 272
Score = 39.2 bits (91), Expect = 4e-04
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 24/152 (15%)
Query: 51 WMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAAN-LNVPLVIDADGLKLVAEHPGLIQD 109
++++ G ++ +V ++I K+AN VP+++D G +D
Sbjct: 55 MAKIAGALVLNIGTLSKE----SVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARD 110
Query: 110 YR---GPVYLTPNKREYENLLSGSEVNAAYIKQGHP---------------NLTVIVKGH 151
+ N E + + ++ + G N + + G
Sbjct: 111 IIREVRLAAIRGNAAEIAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGE 170
Query: 152 EDVIKNNQISLTCKEGNSW-RRCGGQGDLVAG 182
DVI + T G+ + G G L+
Sbjct: 171 VDVIADTSHVYTLHNGHKLLTKVTGAGCLLTS 202
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 45/175 (25%)
Query: 24 ILKNYSPELIVLPH-YLDRNDSVDHIMYWMNRMHSVLIG--------PGLGTEPLVQSNV 74
+ K I +P YL+ +++ +H ++ P
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLEN----EYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 75 IS--IIHKLKAAN------------LNVPLV---IDADGLKLVAEHPGL--IQD---YRG 112
I H LK L+ + I D A L +Q Y+
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 113 PVYLTPNKREYENLLSGSEVNAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEG 167
Y+ N +YE L++ ++ + NL I + D++ +I+L ++
Sbjct: 533 --YICDNDPKYERLVNAIL---DFLPKIEENL--ICSKYTDLL---RIALMAEDE 577
Score = 26.7 bits (58), Expect = 5.8
Identities = 30/209 (14%), Positives = 61/209 (29%), Gaps = 67/209 (32%)
Query: 5 LQCATVTLSIYVCSEGAVP-ILKNYSPELIVLPHYLDRNDSVDHI------MYWMNRMHS 57
+ C +T I P + L V P S HI + W +
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP------PSA-HIPTILLSLIWFD---- 398
Query: 58 VLIGPGLGTEPLVQSNVISIIHKLKAANL-------------NVPLVIDADGLKLVAEHP 104
+++S+V+ +++KL +L ++ L + A H
Sbjct: 399 -----------VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 105 GLIQDYRGPVYLTPNKREYENLLSGSEVNAAYIKQ--GHPNLTVIVKGHEDV-------- 154
++ Y P + ++L+ Y GH +L I
Sbjct: 448 SIVDHYN-----IPKTFDSDDLIPPYLDQ--YFYSHIGH-HLKNIEHPERMTLFRMVFLD 499
Query: 155 ---IKNNQISLTCKEGNSWRRCGGQGDLV 180
++ +I + +W G + +
Sbjct: 500 FRFLE-QKI---RHDSTAWNASGSILNTL 524
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.030
Identities = 23/139 (16%), Positives = 39/139 (28%), Gaps = 46/139 (33%)
Query: 6 QCA--TVTLSIYVC--SEGAVPILKN--------YS-----------PELIVLPHYLDR- 41
Q A + + + S+G +P Y+ L+ + Y R
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY--RG 1790
Query: 42 --------NDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHK-----LKAANLNV 88
D + Y M ++ + E L V+ + K ++ N NV
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVERVGKRTGWLVEIVNYNV 1848
Query: 89 P---LVI--DADGLKLVAE 102
V D L V
Sbjct: 1849 ENQQYVAAGDLRALDTVTN 1867
Score = 31.2 bits (70), Expect = 0.24
Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 97 LKLVAEHPGLIQDYRGPV---YLTPN--KREYENLLSGSEVNAAYIKQGHPNLT-VIVKG 150
L +V +P + + G + N +E ++ G K+ + + T +
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 151 HEDVIK---NNQISLTCKEG---NSWRRCGG--QGDLVAGH 183
+ ++ Q +LT E + G AGH
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Score = 30.0 bits (67), Expect = 0.48
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 37/102 (36%)
Query: 21 AVPI--------LKNYSPELIVLPHYLDRNDSVDHIM----YWMNRM-----HSVLIGPG 63
+P+ L+ S + VD I+ W H + GPG
Sbjct: 456 QIPVYDTFDGSDLRVLSGSIS--------ERIVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 64 --LGTEPLVQSNV----ISIIHKLKAANLNVPLVIDAD-GLK 98
G L N + +I A L++ D D G K
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIV---AGTLDIN--PDDDYGFK 544
Score = 30.0 bits (67), Expect = 0.55
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 10/66 (15%)
Query: 56 HSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVID-ADGLKLVAEHPGLIQD----- 109
HS L+ P L+ +++ A ++ +P V D DG L + +
Sbjct: 428 HSHLLVP---ASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVLSGSISERIVDCI 483
Query: 110 YRGPVY 115
R PV
Sbjct: 484 IRLPVK 489
Score = 26.9 bits (59), Expect = 4.7
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 40/103 (38%)
Query: 78 IHKLKAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLT--PNKREYENLLSGSEVNAA 135
IH L AA L + + + LI++Y + P ++ + L A
Sbjct: 101 IHAL-AAKL------LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAV 149
Query: 136 YIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGNSWRRCGGQGD 178
+G+ L I GGQG+
Sbjct: 150 --GEGNAQLVAI-------------------------FGGQGN 165
>3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1,
structural genomics, joint center for structural
genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis}
Length = 273
Score = 31.5 bits (71), Expect = 0.12
Identities = 27/145 (18%), Positives = 45/145 (31%), Gaps = 27/145 (18%)
Query: 64 LGTEPLVQSNVISIIHKLKAAN-LNVPLVIDADGL-----------KLVAEHPGLIQDYR 111
L L Q S++ A +N V+D G KLV P +++
Sbjct: 64 LNLGHLSQEREQSLLAASDYARQVNKLTVVDLVGYGASDIRNEVGEKLVHNQPTVVKGNL 123
Query: 112 G-------------PVYLTPNKREYENLLSGSEVNAAYIKQGHPNLTVIVKGHEDVIKNN 158
V +P + E + + Q P + G +DV+ +
Sbjct: 124 SEMRTFCQLVSHGRGVDGSPLDQSEEAIEELIQ-ALRQQTQKFPQTVFLATGIQDVLVSQ 182
Query: 159 QISLTCKEGNSW-RRCGGQGDLVAG 182
+ + + G G GDLV
Sbjct: 183 EQVIVLQNGVPELDCFTGTGDLVGA 207
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION,
transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A*
3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A*
1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A*
1yhj_A*
Length = 312
Score = 31.3 bits (71), Expect = 0.13
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 26/122 (21%)
Query: 64 LGTEPLVQSNVISIIHKLKAANLNVPLVID--------ADGLKLVAEHPGLIQDYRGPV- 114
+ + V+ I+ +LK N + V D +G V L+ Y+ V
Sbjct: 85 TRDKSFLAM-VVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVP--EDLLPVYKEKVV 141
Query: 115 ----YLTPNKREYENLLSGSEVN--------AAYIKQGHPNLTVIVKGHEDVIKNNQISL 162
+TPN+ E E LLSG +++ + P+ TV++ + L
Sbjct: 142 PLADIITPNQFEAE-LLSGRKIHSQEEALRVMDMLHSMGPD-TVVITSSDLPSPQGSNYL 199
Query: 163 TC 164
Sbjct: 200 IV 201
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL
6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Length = 134
Score = 28.1 bits (63), Expect = 0.87
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 122 EYENLLSGSEVNAAYIKQGHPNLTVIVKGHED 153
EY +L + +AAY+ P V+V+G+ D
Sbjct: 44 EYVQIL---DAHAAYLNA-TPAAKVLVEGNTD 71
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport
protein-lipoprotein complex; 1.50A {Escherichia coli}
SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Length = 118
Score = 26.9 bits (60), Expect = 2.4
Identities = 8/34 (23%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 120 KREYENLLSGSEVNAAYIKQGHPNLTVIVKGHED 153
+ ++ +L + +A +++ +P+ V V+GH D
Sbjct: 18 RSDFAQML---DAHANFLRS-NPSYKVTVEGHAD 47
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex
aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 27.4 bits (62), Expect = 2.7
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 17/54 (31%)
Query: 60 IGPGLG--TEPLVQSNV------------ISIIHKLKAANLNVPLVIDADGLKL 99
+G G G T+ L+Q + + + + L VI+ D K
Sbjct: 38 VGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLE---VINEDASKF 88
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG,
thermus thermophilus HB8, structural genomics, NPPSFA;
2.30A {Thermus thermophilus}
Length = 268
Score = 26.8 bits (60), Expect = 4.0
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 60 IGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDA 94
IG G G + ++ + + P+V+DA
Sbjct: 156 IGSGWG---VRTRALLELF--AREKASLPPVVVDA 185
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli}
SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 26.3 bits (59), Expect = 5.1
Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 14/53 (26%)
Query: 60 IGPGLG--TEPLVQS-----------NVISIIHKLKAANLNVPLVIDADGLKL 99
IGPGL TEP+ + ++ + + + + D +
Sbjct: 28 IGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKL-TIYQQDAMTF 79
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A
{Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A
1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Length = 141
Score = 25.9 bits (57), Expect = 5.2
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 26 KNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAAN 85
P +I YL+ S D ++ + M G+ L++ NV +
Sbjct: 25 SGTEPTII---LYLENPPSRDELVKLIADM-------GISVRALLRKNV----EPYEQLG 70
Query: 86 LNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNK----REYENLLS 128
L D + + +HP LI P+ +TP R E +L
Sbjct: 71 LAEDKFTDDQLIDFMLQHPILIN---RPIVVTPLGTRLCRPSEVVLD 114
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A
{Zymomonas mobilis} PDB: 3owo_A*
Length = 383
Score = 26.7 bits (60), Expect = 5.5
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 15/57 (26%)
Query: 91 VID-ADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLL---------SGSEVNAAYI 137
D A + LVA + G ++DY G +K + L + SE+ I
Sbjct: 100 PHDCAKAIALVATNGGEVKDYEG-----IDKSKKPALPLMSINTTAGTASEMTRFCI 151
>3rdw_A Putative arsenate reductase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 2.20A {Yersinia pestis}
Length = 121
Score = 25.7 bits (57), Expect = 5.7
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 82 KAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNK 120
K NL+ + L+ +A++P LI+ R P+ +T K
Sbjct: 71 KTLNLDDRGLTQDQLLQAMADNPKLIE--R-PIVVTQGK 106
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure
initiative, modified lysin, structural genomics; HET:
BGC; 2.45A {Clostridium perfringens}
Length = 328
Score = 26.4 bits (59), Expect = 5.7
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 11/69 (15%)
Query: 69 LVQSNV-ISIIHKLKAANLNVPLVID---ADGLKLVAEHPGLIQDYRGPVYLTPNKREYE 124
++ S+ + + LK ++D A+ V + PN+ E E
Sbjct: 141 VLDSDNPEIMEYLLKNFKDKTNFILDPVSAEKASWVKHLIKDF-HT-----IKPNRHEAE 194
Query: 125 NLLSGSEVN 133
+L+G +
Sbjct: 195 -ILAGFPIT 202
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein
synthesis; 1.98A {Coxiella burnetii}
Length = 255
Score = 26.3 bits (59), Expect = 6.1
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 12/52 (23%)
Query: 60 IGPGLG--TEPLVQS--NVISI------IHKLKA--ANLNVPLVIDADGLKL 99
IGPG G T+ L+ N+ + + L+ + D L+
Sbjct: 36 IGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF 87
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 25.9 bits (58), Expect = 7.2
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 60 IGPGLG--TEPLVQS--NVISI------IHKLKAANLNVPL-VIDADGLKL 99
+GPGLG T L+++ V +I L+ +P+ ++ D L
Sbjct: 53 VGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLY 103
>3e15_A Glucose-6-phosphate 1-dehydrogenase; 6-phosphogluconolactonase,
malaria, carbohydrate metabolism, glucose metabolism,
NADP, oxidoreductase,; HET: MSE; 2.00A {Plasmodium
vivax}
Length = 312
Score = 26.0 bits (57), Expect = 7.4
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 124 ENLLSGSEVNAAYIKQGHPNLTVIVKGHEDVIK 156
++ A Y+ N TV+ G+ + +
Sbjct: 268 YVDVNYCLYPAVYL-IDSMNTTVVTCGYTNYPQ 299
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 26.1 bits (57), Expect = 7.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 87 NVPLVIDADGLKLVAEHPGLIQDYRGPVYLT 117
++ L ID LK + +I D RGPV+L
Sbjct: 521 DINLKIDDIALKQIMSKNKVI-DVRGPVFLN 550
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR
{Streptococcus pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 26.0 bits (58), Expect = 8.2
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 14/53 (26%)
Query: 60 IGPGLG--TEPLVQS-----------NVISIIHKLKAANLNVPLVIDADGLKL 99
IG G G T L + ++ ++ + N V +I D L+
Sbjct: 36 IGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRV-TLIHQDILQF 87
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center
for structural genomics of infectious diseases, CSGI
oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Length = 119
Score = 24.9 bits (55), Expect = 9.3
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 16/95 (16%)
Query: 26 KNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAAN 85
+ +P++I YL+ + SV+ + + LG + K N
Sbjct: 27 QGIAPQVI---KYLETSPSVEELKRLYQQ---------LGLNEVRAMMRCKEE-LYKELN 73
Query: 86 LNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNK 120
L + D +AEHP LI+ R P+ + +
Sbjct: 74 LGDSQLSDDALFAAMAEHPKLIE--R-PIVVCNGQ 105
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 26.1 bits (57), Expect = 9.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 87 NVPLVIDADGLKLVAEHPGLIQDYRGPVYLT 117
++ L ID LK + +I D RGPV+L
Sbjct: 521 DINLKIDDIALKQIMSKNKVI-DVRGPVFLN 550
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.421
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,885,194
Number of extensions: 163786
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 40
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)