RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9483
(186 letters)
>d1ekqa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Bacillus subtilis [TaxId: 1423]}
Length = 269
Score = 49.6 bits (118), Expect = 3e-08
Identities = 30/196 (15%), Positives = 62/196 (31%), Gaps = 45/196 (22%)
Query: 7 CATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGT 66
A L++ GA P++ E+ + ++++ G +
Sbjct: 32 TANGLLAL-----GASPVMAYAKEEVADMA----------------KIAGALVLNIGTLS 70
Query: 67 EPLVQSNVISIIHKLKAAN-LNVPLVIDADGLKLVAEHPGLIQDYRG---PVYLTPNKRE 122
+ +V ++I K+AN VP+++D G +D + N E
Sbjct: 71 KE----SVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAE 126
Query: 123 YENLLSGSE---------------VNAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEG 167
+ + ++ + A N + + G DVI + T G
Sbjct: 127 IAHTVGVTDWLIKGVDAGEGGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNG 186
Query: 168 NSW-RRCGGQGDLVAG 182
+ + G G L+
Sbjct: 187 HKLLTKVTGAGCLLTS 202
>d1v8aa_ c.72.1.2 (A:) Hydroxyethylthiazole kinase (THZ kinase,
ThiK) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 264
Score = 48.8 bits (116), Expect = 6e-08
Identities = 32/194 (16%), Positives = 55/194 (28%), Gaps = 43/194 (22%)
Query: 7 CATVTLSIYVCSEGAVPILKNYSPELIVLPHYLDRNDSVDHIMYWMNRMHSVLIGPGLGT 66
A L++ GA P++ + EL + + +V+I G
Sbjct: 30 TANALLAL-----GASPVMAHAEEELEEM----------------IRLADAVVINIGTLD 68
Query: 67 EPLVQSNVISIIHKLKAAN-LNVPLVIDADGLKLVAEHPGLIQDY--RGPVYLTPNKREY 123
+S ++ + AN L P+V+D G + + RG L N E
Sbjct: 69 SGWRRS----MVKATEIANELGKPIVLDPVGAGATKFRTRVSLEILSRGVDVLKGNFGEI 124
Query: 124 ENLLSGSE---------------VNAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGN 168
LL N TV V G D + + + + G+
Sbjct: 125 SALLGEEGKTRGVDSLEYGEEEAKKLTMNAAREFNTTVAVTGAVDYVSDGRRTFAVYNGH 184
Query: 169 SWRRCGGQGDLVAG 182
+
Sbjct: 185 ELLGRVTGTGCMVA 198
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 27.6 bits (61), Expect = 0.49
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 18/96 (18%)
Query: 37 HYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADG 96
YL+ S D ++ + M L++ NV + L D
Sbjct: 31 LYLENPPSRDELVKLIADMGI-------SVRALLRKNV----EPYEQLGLAEDKFTDDQL 79
Query: 97 LKLVAEHPGLIQDYRGPVYLTPNK----REYENLLS 128
+ + +HP LI R P+ +TP R E +L
Sbjct: 80 IDFMLQHPILIN--R-PIVVTPLGTRLCRPSEVVLD 112
>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment)
{Bacillus stearothermophilus, newly identified strain as
yet unnamed [TaxId: 1422]}
Length = 408
Score = 26.0 bits (56), Expect = 3.1
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 16/67 (23%)
Query: 44 SVDHIMYWMNRMHSVLIGPGLGTEPLVQ--------------SNVISIIHKL--KAANLN 87
+ D I M +++ L L L+Q + ++ ++ +A L
Sbjct: 332 AADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLR 391
Query: 88 VPLVIDA 94
VPL +D
Sbjct: 392 VPLKVDY 398
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus
subtilis [TaxId: 1423]}
Length = 114
Score = 25.0 bits (54), Expect = 3.2
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 11/72 (15%)
Query: 37 HYLDRNDSVDHIMYWMNRMHSVLIGPGLGTEPLVQSNVISIIHKLKAANLNVPLVIDADG 96
+ S+D I + GT+ ++ + + N+NV + D
Sbjct: 31 NIFSEPLSIDEIKQILRMTE-------DGTDEIISTRS----KVFQKLNVNVESMPLQDL 79
Query: 97 LKLVAEHPGLIQ 108
+L+ EHPGL++
Sbjct: 80 YRLINEHPGLLR 91
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
{Escherichia coli [TaxId: 562]}
Length = 410
Score = 25.9 bits (56), Expect = 3.2
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 16/66 (24%)
Query: 45 VDHIMYWMNRMHSVLIGPGLGTEPLVQ--------------SNVISIIHKL--KAANLNV 88
D I M + + L ++Q V IH+L L+V
Sbjct: 335 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDV 394
Query: 89 PLVIDA 94
PL+++
Sbjct: 395 PLLVEV 400
>d1qhva_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human
adenovirus type 2 [TaxId: 10515]}
Length = 195
Score = 25.2 bits (55), Expect = 5.0
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Query: 82 KAANLNVPLVIDADGLKLVAEHPGLIQDYRGPVYLTPNKREYENLLSGSEVNAAYIKQGH 141
A++++ L D +G L+ L + Y N R + + NA
Sbjct: 64 TVASVSIFLRFDQNG-VLMENSS-LKKHYW-------NFRNGNSTNANPYTNAVGFM--- 111
Query: 142 PNLTVIVKGHEDVIKNNQISLTCKEGN 168
PNL K KNN +S G+
Sbjct: 112 PNLLAYPKTQSQTAKNNIVSQVYLHGD 138
>d1knba_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human
adenovirus type 5 [TaxId: 28285]}
Length = 186
Score = 25.2 bits (55), Expect = 5.0
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 119 NKREYENLLSGSEVNAAYIKQGHPNLTVIVKGHEDVIKNNQISLTCKEGN 168
N R + + NA PNL+ K H K+N +S G+
Sbjct: 84 NFRNGDLTEGTAYTNAVGFM---PNLSAYPKSHGKTAKSNIVSQVYLNGD 130
>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha
constant domain 2, CH2-alpha {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 23.9 bits (51), Expect = 7.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 141 HPNLTVIVKGHEDVIKNNQISLTC 164
HP L++ ED++ ++ +LTC
Sbjct: 2 HPRLSLHRPALEDLLLGSEANLTC 25
>d1eara2 d.58.38.1 (A:75-142) Urease metallochaperone UreE,
C-terminal domain {Bacillus pasteurii [TaxId: 1474]}
Length = 68
Score = 23.1 bits (50), Expect = 8.8
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 67 EPLVQSNVISIIHKLKAA----NLNVPLVIDADGLKLVAEHP 104
E + ++ K A N + +I+ D + + +
Sbjct: 2 EKVYVIKPQTMQEMGKMAFEIGNRHTMCIIEDDEILVRYDKT 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.139 0.421
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 704,956
Number of extensions: 30657
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 10
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.7 bits)