BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9484
(407 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08999|RBL2_HUMAN Retinoblastoma-like protein 2 OS=Homo sapiens GN=RBL2 PE=1 SV=3
Length = 1139
Score = 276 bits (706), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/339 (43%), Positives = 204/339 (60%), Gaps = 36/339 (10%)
Query: 15 ELCMALNIDSTTAKEAWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKATVPTVNSNRTIE 74
ELC LN+D EAW++Y+ MS YTLEG+ LHWL C+LYV+CRK +VPTV S T+E
Sbjct: 51 ELCSRLNMDEAARAEAWDSYRSMSESYTLEGNDLHWLACALYVACRK-SVPTV-SKGTVE 108
Query: 75 GNLVCLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFTKYLP 134
GN V LT +LK + SL +F NK +KW DM LP FR + RLERNF VS VIF KY P
Sbjct: 109 GNYVSLTRILKCSEQSLIEFFNKMKKWEDMANLPPHFRERTERLERNFTVSAVIFKKYEP 168
Query: 135 MFKEMFKPPDLDELLMHVRHNKKKMIHCTSTKVFEFTWILFVLTKAEYLDVSNDLVNSFH 194
+F+++FK P +E R K++ CT +++F F W+LF+ K + +S+DLVNS+H
Sbjct: 169 IFQDIFKYPQ-EEQPRQQRGRKQRRQPCTVSEIFHFCWVLFIYAKGNFPMISDDLVNSYH 227
Query: 195 LLIATCDLIYANVIQ-SKLRDIVNPDFEGMPSNFLDSHFAPLDDPPCIISILCKHHDGCK 253
LL+ DL+Y N +Q S +++VNP+F+G+ +F P DPPCII LC HDG
Sbjct: 228 LLLCALDLVYGNALQCSNRKELVNPNFKGLSEDFHAKDSKPSSDPPCIIEKLCSLHDGLV 287
Query: 254 LCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQKLRGNI 313
L ++ I +H W P + + + ++ L+G
Sbjct: 288 L---------EAKGIKEHF------------W---KPYIRKLYE--------KKLLKGKE 315
Query: 314 EDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERIFL 352
E+L+ LEP NF +FK +NK YEEY+LSVG+ DERIFL
Sbjct: 316 ENLTGFLEPGNFGESFKAINKAYEEYVLSVGNLDERIFL 354
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 256 VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQ 307
V +RAE L R++VKHLN EEQ+LD LAW SPLW+ I D+ +P CE+
Sbjct: 570 VFIRAEDGLCREVVKHLNQIEEQILDHLAWKPESPLWEKIRDNENRVPTCEE 621
>sp|O55081|RBL2_RAT Retinoblastoma-like protein 2 OS=Rattus norvegicus GN=Rbl2 PE=1
SV=1
Length = 1135
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 149/349 (42%), Positives = 208/349 (59%), Gaps = 40/349 (11%)
Query: 7 NETAHQHQELCMALNIDSTTAKEAWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKATVPT 66
++ + +ELC LN+D EAW++Y+ MS YTLEG+ LHWL C+LYV+CRK +VPT
Sbjct: 40 HQIQQRFEELCSRLNMDEAARAEAWSSYRSMSESYTLEGNDLHWLACALYVACRK-SVPT 98
Query: 67 VNSNRTIEGNLVCLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSK 126
V S T EGN V LT +L+ + SL +F NK +KW DM LP FR + RLERNF VS
Sbjct: 99 V-SKGTAEGNYVSLTRILRCSEQSLIEFFNKMKKWEDMANLPPHFRERTERLERNFTVSA 157
Query: 127 VIFTKYLPMFKEMFKPPDLDELLMHVRHNKKKMIHCTSTKVFEFTWILFVLTKAEYLDVS 186
VIF KY P+F+++FK P +E R K++ CT++++F F W+LF+ K + +S
Sbjct: 158 VIFKKYEPIFQDIFKYPQ-EEQPRQQRGRKQRRQPCTTSEIFHFCWVLFIYAKGNFPMIS 216
Query: 187 NDLVNSFHLLIATCDLIYANVIQ-SKLRDIVNPDFEGMPSNF--LDSHFAPLDDPPCIIS 243
+DLVNS+HLL+ DL+Y N +Q S +++VNP+F+G+ + DSH P DPPC+I
Sbjct: 217 DDLVNSYHLLLCALDLVYGNALQCSNRKELVNPNFKGVSEDGHPRDSH--PSSDPPCVIE 274
Query: 244 ILCKHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIP 303
LC HDG L ++ I +H W P + + +
Sbjct: 275 KLCSLHDGLVL---------EAKGIKQHF------------W---KPYIRKLFE------ 304
Query: 304 GCEQKLRGNIEDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERIFL 352
++ LRG E+L+ LEP NF +FK VNK YEEY+L+ G DERIFL
Sbjct: 305 --KKLLRGKEENLTGFLEPGNFAESFKAVNKAYEEYVLATGSLDERIFL 351
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 256 VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQ 307
V +RAE L R++VKHLN EEQ+LD LAW + SPLW I D+ +P CE+
Sbjct: 567 VFIRAEDGLCREVVKHLNQIEEQILDHLAWKTKSPLWDRIRDNENRVPTCEE 618
>sp|Q64700|RBL2_MOUSE Retinoblastoma-like protein 2 OS=Mus musculus GN=Rbl2 PE=1 SV=3
Length = 1135
Score = 266 bits (679), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 143/347 (41%), Positives = 205/347 (59%), Gaps = 36/347 (10%)
Query: 7 NETAHQHQELCMALNIDSTTAKEAWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKATVPT 66
++ + +ELC LN+D EAW++Y+ MS YTLEG+ LHWL C+LYV+CRK +VPT
Sbjct: 40 HQIQQRFEELCSRLNMDEAARAEAWSSYRSMSESYTLEGNDLHWLACALYVACRK-SVPT 98
Query: 67 VNSNRTIEGNLVCLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSK 126
V S T EGN V LT +L+ + SL +F NK +KW DM LP FR + RLERNF VS
Sbjct: 99 V-SKGTAEGNYVSLTRILRCSEQSLIEFFNKMKKWEDMANLPPHFRERTERLERNFTVSA 157
Query: 127 VIFTKYLPMFKEMFKPPDLDELLMHVRHNKKKMIHCTSTKVFEFTWILFVLTKAEYLDVS 186
VIF KY P+F+++FK P +E R K++ CT++++F F W+LF+ K + +S
Sbjct: 158 VIFKKYEPIFQDIFKYPQ-EEQPRQQRGRKQRRQPCTTSEIFHFCWVLFIYAKGNFPMIS 216
Query: 187 NDLVNSFHLLIATCDLIYANVIQ-SKLRDIVNPDFEGMPSNFLDSHFAPLDDPPCIISIL 245
+DLVNS+HLL+ DL+Y N +Q S +++VNP+F+G+ + DPPC+I L
Sbjct: 217 DDLVNSYHLLLCALDLVYGNALQCSNRKELVNPNFKGLSEDCHPKDSKASSDPPCVIEKL 276
Query: 246 CKHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGC 305
C HDG L ++ I +H W P + + +
Sbjct: 277 CSLHDGLVL---------EAKGIKEHF------------W---KPYIRKLFE-------- 304
Query: 306 EQKLRGNIEDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERIFL 352
++ L+G E+L+ LEP NF +FK VNK YEEY+L+ G+ DER+FL
Sbjct: 305 KKLLKGKEENLTGFLEPGNFGESFKAVNKAYEEYVLAAGNLDERVFL 351
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 256 VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQ 307
V +RAE L R++VKHLN EEQ+LD LAW + SPLW I D+ +P CE+
Sbjct: 567 VFIRAEDGLCREVVKHLNQIEEQILDHLAWKTKSPLWDRIRDNENRVPTCEE 618
>sp|P28749|RBL1_HUMAN Retinoblastoma-like protein 1 OS=Homo sapiens GN=RBL1 PE=1 SV=3
Length = 1068
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 143/340 (42%), Positives = 198/340 (58%), Gaps = 40/340 (11%)
Query: 14 QELCMALNIDSTTAKEAWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKATVPTVNSNRTI 73
Q LC LN+D +A EA + + + +Y+LEG HWL CSLYV+CRK+ +PTV +
Sbjct: 22 QALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVTHWLACSLYVACRKSIIPTVGKG-IM 80
Query: 74 EGNLVCLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFTKYL 133
EGN V LT +L+ K+SL QF +K +KW DM LP FR +I RLERNF VS VIF KY
Sbjct: 81 EGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLERNFEVSTVIFKKYE 140
Query: 134 PMFKEMFKPPDLDELLMHVRHNKKKMIHCTSTKVFEFTWILFVLTKAEYLDVSNDLVNSF 193
P+F ++F+ P +E R K++ I C+ +F F W LFV TK + + +DLVNS+
Sbjct: 141 PIFLDIFQNP-YEEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGNFRMIGDDLVNSY 199
Query: 194 HLLIATCDLIYANVIQSKLR-DIVNPDFEGMPSNFLDSHFAPLDDPPCIISILCKHHDGC 252
HLL+ DLI+AN I R D++NP F+G+PS+F + F ++PPCII++LC+ HDG
Sbjct: 200 HLLLCCLDLIFANAIMCPNRQDLLNPSFKGLPSDFHTADFTASEEPPCIIAVLCELHDG- 258
Query: 253 KLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQKLRGN 312
++V A+ I +H P + D + L+G
Sbjct: 259 ---LLVEAKG-----IKEHY---------------FKPYISKLFD--------RKILKGE 287
Query: 313 IEDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERIFL 352
+L+ +F N K VNK YEEY+L+VGDFDERIFL
Sbjct: 288 -----CLLDLSSFTDNSKAVNKEYEEYVLTVGDFDERIFL 322
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 256 VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQ 307
V++R+E LSRD+VKHLN EEQ+L+SLAW +S LW+ ++ S ++P CE+
Sbjct: 539 VVIRSEEGLSRDMVKHLNSIEEQILESLAWSHDSALWEALQVSANKVPTCEE 590
>sp|Q64701|RBL1_MOUSE Retinoblastoma-like protein 1 OS=Mus musculus GN=Rbl1 PE=1 SV=3
Length = 1063
Score = 254 bits (648), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/340 (41%), Positives = 198/340 (58%), Gaps = 40/340 (11%)
Query: 14 QELCMALNIDSTTAKEAWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKATVPTVNSNRTI 73
Q LC LN+D +A EA + + + +Y+LEG +HWL CSLYV+CRK+ +PTV +
Sbjct: 22 QALCQELNLDEGSAAEALDDFTAIRGNYSLEGEVIHWLACSLYVACRKSIIPTVGKG-VM 80
Query: 74 EGNLVCLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFTKYL 133
EGN V LT +L+ K+SL QF +K +KW DM LP FR +I RLERNF VS VIF K+
Sbjct: 81 EGNCVSLTRILRSAKLSLIQFFSKMKKWMDMSNLPQEFRERIERLERNFEVSTVIFKKFE 140
Query: 134 PMFKEMFKPPDLDELLMHVRHNKKKMIHCTSTKVFEFTWILFVLTKAEYLDVSNDLVNSF 193
P+F ++F+ P +E R K++ I C+ +F F W LFV TK + + +DLVNS+
Sbjct: 141 PIFLDIFQNP-YEEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVYTKGNFRMIGDDLVNSY 199
Query: 194 HLLIATCDLIYANVIQ-SKLRDIVNPDFEGMPSNFLDSHFAPLDDPPCIISILCKHHDGC 252
HLL+ DLI+AN I RD++NP F+G+PS+F F ++PPCII++LC HDG
Sbjct: 200 HLLLCCLDLIFANAIMCPNRRDLLNPSFKGLPSDFHAPDFKAAEEPPCIIAVLCDLHDG- 258
Query: 253 KLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQKLRGN 312
++V A+ I +H P + D ++ L+G
Sbjct: 259 ---LLVEAKG-----IKEHY---------------FKPYISKLFD--------KKILKGE 287
Query: 313 IEDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERIFL 352
+L+ +F N K VNK YEEY+L+VGDFDERIFL
Sbjct: 288 -----CLLDLSSFTDNSKAVNKEYEEYVLTVGDFDERIFL 322
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 39/52 (75%)
Query: 256 VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQ 307
V++R+E LSRD+VKHLN EEQ+L+SLAW +NS LW+ + S +P CE+
Sbjct: 539 VVIRSEEGLSRDMVKHLNSIEEQILESLAWTNNSALWEALHASANRVPSCEE 590
>sp|Q24472|RBF_DROME Retinoblastoma family protein OS=Drosophila melanogaster GN=Rbf
PE=1 SV=2
Length = 845
Score = 186 bits (471), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 193/384 (50%), Gaps = 56/384 (14%)
Query: 12 QHQELCMALNIDSTTAKEAWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKATVPTVNS-N 70
++ LC LN+D T + + Y E+S ++EG+ HW+ C++Y +CR+ + PTV N
Sbjct: 31 EYTNLCRDLNMDRQTELQGYETYLEVSQRCSMEGTASHWMCCAIYTACRRTSTPTVTGQN 90
Query: 71 RTIEGNLVCLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFT 130
++GN V L +LL+ CKMS+ +F K ++W DM LP F ++I L+R F+++ ++
Sbjct: 91 AVVKGNCVSLNNLLRCCKMSIYEFKTKIKQWCDMANLPQEFVNEIEDLDRKFSITFMLHK 150
Query: 131 KYLPMFKEMFK-PPDLDE----LLMHVRHNKKKMIHCTSTKVFEFTWILFVLTKAEYLDV 185
++ + +F PP+ + + +H H K C+ K+ + W LF+ K +
Sbjct: 151 RFRIIMDMIFSCPPNEKKHSKYISLHGNHAHGK---CSYIKLDDICWRLFLCAKNQKPSN 207
Query: 186 SNDLVNSFHLLIATCDLIYANVIQSKLRDIVNPDFEGMPSNFLDSHFAPLDDPPCIISIL 245
+ DLV S++L+I DLIY NV+ K D++NP FEG+PSN+ + F +P CI+S
Sbjct: 208 TVDLVTSYNLMICCIDLIYNNVLAEKRTDLINPKFEGLPSNWTELDFR--HNPHCILSNF 265
Query: 246 CKHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGC 305
C + K +A+ R Q++ S S
Sbjct: 266 CDMTEEAKA-----MKATTFR-----------QIMSSFFQAST----------------- 292
Query: 306 EQKLRGNIEDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERIFLPKFQSFDETA--- 362
+ GN + + +L ENF+ N K +N YE+Y+LSVG+FDERI L + + + TA
Sbjct: 293 ---IYGNKDTMLGLLANENFERNLKSLNISYEQYVLSVGEFDERI-LSAYDAGEHTALND 348
Query: 363 -----PGSSGPGLDDLSPAPAPGG 381
P + DL PA G
Sbjct: 349 QSLRPPVTPLTRKQDLPAQPAMAG 372
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 13/65 (20%)
Query: 241 IISILCKH--HDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDS 298
II I+ +H H+GC L+R ++KHLN EE L+ LAW NS +W+ I +
Sbjct: 515 IIEIVVRHGSHEGC-----------LNRSLIKHLNSIEETCLERLAWARNSTVWEMIASA 563
Query: 299 GQEIP 303
+P
Sbjct: 564 QLPLP 568
>sp|P06400|RB_HUMAN Retinoblastoma-associated protein OS=Homo sapiens GN=RB1 PE=1 SV=2
Length = 928
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 239 PCIISIL-CKHHDGCKLC-VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIE 296
P I+++L K D K+ ++AE +L+R+++KHL E ++++SLAW+S+SPL+ I+
Sbjct: 515 PWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESLAWLSDSPLFDLIK 574
Query: 297 DS 298
S
Sbjct: 575 QS 576
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 79 CLTSLLKHCKMSLNQFLNKCRKWADMRKLPDSFRSKIARLERNFAVSKVIFTKYLPMFKE 138
T L K+ ++S+++F N ++ K+ ++ ++RL + + V +F+K
Sbjct: 116 TFTELQKNIEISVHKFFNLLKEIDTSTKVDNA----MSRLLKKYDVLFALFSKL------ 165
Query: 139 MFKPPDLDELLMHVRHNKKKMIHCTSTKVFEFTWILFVLTKAEYLDVSNDLVNSFHLLIA 198
EL+ + + S V + +WI F+L K E L + +DLV SF L++
Sbjct: 166 ----ERTCELIYLTQPSSSISTEINSALVLKVSWITFLLAKGEVLQMEDDLVISFQLMLC 221
Query: 199 TCD----LIYANVIQSKLRDIVNPDFEGMP------SNFLDSHFAPLDDPPCIISILCKH 248
D L +++ + V P G P N L++ II +LCK
Sbjct: 222 VLDYFIKLSPPMLLKEPYKTAVIP-INGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKE 280
Query: 249 HD 250
H+
Sbjct: 281 HE 282
>sp|P13405|RB_MOUSE Retinoblastoma-associated protein OS=Mus musculus GN=Rb1 PE=1 SV=2
Length = 921
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 239 PCIISIL-CKHHDGCKLC-VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIE 296
P I+++L K D K+ ++ EA+L+R+++KHL E ++++SLAW+S+SPL+ I+
Sbjct: 509 PWILNVLNLKAFDFYKVIESFIKVEANLTREMIKHLERCEHRIMESLAWLSDSPLFDLIK 568
Query: 297 DS 298
S
Sbjct: 569 QS 570
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 164 STKVFEFTWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANVIQSKLRD---IVNPDF 220
S V + +WI F+L K E L + +DLV SF L++ D + LR+
Sbjct: 181 SMLVLKISWITFLLAKGEVLQMEDDLVISFQLMLCVVDYFIKFSPPALLREPYKTAAIPI 240
Query: 221 EGMP------SNFLDSHFAPLDDPPCIISILCKHHD 250
G P N L++ II +LCK H+
Sbjct: 241 NGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHE 276
>sp|P33568|RB_RAT Retinoblastoma-associated protein OS=Rattus norvegicus GN=Rb1 PE=1
SV=3
Length = 920
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 239 PCIISIL-CKHHDGCKLC-VIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIE 296
P I+++L K D K+ ++ EA+L+R+++KHL E ++++SLAW+S+SPL+ I+
Sbjct: 508 PWILNVLNLKAFDFYKVIESFIKVEANLTREMIKHLERCEHRIMESLAWLSDSPLFDLIK 567
Query: 297 DS 298
S
Sbjct: 568 QS 569
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 167 VFEFTWILFVLTKAEYLDVSNDLVNSFHLLIATCD 201
V + +WI F+L K E + + +DLV SF L++ D
Sbjct: 183 VLKVSWITFLLAKGEVVQMEDDLVISFQLMLCVLD 217
>sp|Q90600|RB_CHICK Retinoblastoma-associated protein OS=Gallus gallus GN=RB1 PE=1 SV=1
Length = 921
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQ 307
++ E SL+RD++KHL E ++++SLAW S+SPL+ I+ S + +Q
Sbjct: 528 IKVEPSLTRDMIKHLERCEHRIMESLAWQSDSPLFDLIKQSKEREGQTDQ 577
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 96/255 (37%), Gaps = 39/255 (15%)
Query: 16 LCMALNIDSTTAKEAWNAYKEMSHHYTLEGSQLHWLGCSLYVSCRKAT--VPTVNSNRTI 73
LC AL + ++AW Y+ ++ G S Y +K T V +
Sbjct: 44 LCDALKAPDSVREKAWMTYQSLAAAD----------GASAYNKKKKETWGVCIFIVAIDL 93
Query: 74 EGNLVCLTSLLKHCKMSLNQFLNKCRKW-ADMRKLPDSFRSKIARLERNFAVSKVIFTKY 132
+ T LLK +S+ F ++ +M + S ++RL++ + V ++ K+
Sbjct: 94 DEMTFTFTELLKSLSISVCTFFQFLKEVDVNMDTVSTKVDSTVSRLKKKYDVLLALYHKF 153
Query: 133 LPMFKEMFKPPDLDELLMHVRHNKKKMIHCTSTKVFEFTWILFVLTKAEYLDVSNDLVNS 192
++ E+ + +S V + WI F+L K + L + +DLV S
Sbjct: 154 ERTCGLIYLEQPSSEISAEL----------SSVLVLKNYWITFLLAKGKVLQMEDDLVIS 203
Query: 193 FHLLIATCDLIYANVIQSKLRDIVNPDFEGMPSNFLDSHFAP-------------LDDPP 239
F LL+ D + L++ + N S P +D
Sbjct: 204 FQLLLCVLDYFIKLSPPAMLKEPYKSAVTALTVN--GSTRTPRRGQNRNARASKQIDTDT 261
Query: 240 CIISILCKHHDGCKL 254
+I ILCK HD C L
Sbjct: 262 KVIEILCKEHD-CNL 275
>sp|A9SVH7|RBR_PHYPA Retinoblastoma-related protein OS=Physcomitrella patens subsp.
patens GN=RBR PE=3 SV=1
Length = 1116
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 79/383 (20%), Positives = 146/383 (38%), Gaps = 86/383 (22%)
Query: 18 MALNIDSTTAKEAWNAYKEMS----------HHYTLEGSQLHWLGCSLYVSCRKATVPTV 67
+ L +D T ++A +KE T+E ++ W GC LYV + TV
Sbjct: 97 VGLCLDDPTLQQALRLFKESKPLLLANIDSIGTSTVEDTERLWGGCVLYVVKALSCGATV 156
Query: 68 NSNRTIEGNLV--CLTSLLKHCKMSLNQFLNK---CRKWADMRKLPDSF----------- 111
+ +++ E N V L+ L++ K+ + L+ C + +LP
Sbjct: 157 DGDKS-ESNAVGFTLSQLMRQTKIRHARELDMISICAITECLLELPHFLVKVGPIVKQMY 215
Query: 112 ------RSKIARLERNFAVSKVIFTKYLPMFKEMFKPPD-----LDELLMHVRHNKKKMI 160
R ++ ++ NF +FT + ++++ F PD + L VR +
Sbjct: 216 GDEWEKRLQVKEVQANFVHLTALFTYFKRVYQDFFLSPDTFTNIVSRSLSGVRDEHHVSV 275
Query: 161 HCTSTKVFEFTWILFVLTKAEYLDVSNDLVNSFHLLIAT--CDLIYANVIQSKLRDIVNP 218
H +F W+LF+ + + +DLV + L+A C+ + +S L
Sbjct: 276 H------MQFGWMLFLALRMHVIQQFSDLVTCTNALMAVMFCEPLSGAWSKSNLGFC--- 326
Query: 219 DFEGMPSNFLDSHFAP------LDDPPCIISILCKHHDGCKLCVIVRAEASLSRDIVKHL 272
F L H P L DP V +S D+V L
Sbjct: 327 -FFVFMQVILILHMPPDLRKFSLQDP-----------------VRFAKRSSEGVDLVASL 368
Query: 273 NLT---EEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQKLRGNIEDLSAILEPENFDYNF 329
T ++ + SL +N+ + K + ++G + L +++ ++ N
Sbjct: 369 CATYYAADEDVSSLLEKANATISKLF----------GKPMKGGLAYLEGLMDKKSLAANL 418
Query: 330 KVVNKMYEEYILSVGDFDERIFL 352
+++ K YE+ S G DER+F+
Sbjct: 419 RMLEKDYEDSYQSRGGLDERMFI 441
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E +L R++ +HLN EE++L+S+AW S ++ ++
Sbjct: 698 VRHEETLPRELKRHLNTIEERILESMAWEKGSSMYNSL 735
>sp|Q8H0J6|RBR2_MAIZE Retinoblastoma-related protein 2 OS=Zea mays GN=RBR2 PE=2 SV=1
Length = 866
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E +L R++ +HLN EEQ+L+S+AW S L+ ++
Sbjct: 438 VRHEETLPRELKRHLNSLEEQILESMAWEKGSSLYNSL 475
>sp|Q9LKX9|RBR1_MAIZE Retinoblastoma-related protein 1 OS=Zea mays GN=RBR1 PE=1 SV=2
Length = 867
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E +L R++ +HLN EEQ+L+S+AW S L+ ++
Sbjct: 439 VRHEETLPRELKRHLNSLEEQLLESMAWEKGSSLYNSL 476
>sp|Q3LXA7|RBR3_MAIZE Retinoblastoma-related protein 3 OS=Zea mays GN=RBR3 PE=2 SV=1
Length = 1010
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 80/376 (21%), Positives = 149/376 (39%), Gaps = 70/376 (18%)
Query: 2 GQLADNETAHQHQELCMA-LNIDSTTAKEAWNAYKEMSH----------HYTLEGSQLHW 50
+A + +LC A L +D +T ++A KE ++ + E + W
Sbjct: 19 ASVAAASIEERFADLCKAKLGLDESTTRQAMQLLKETNNILKSSMSSLGGGSPEEIERFW 78
Query: 51 LGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHCKMSLNQFLNK----CRKWAD-MR 105
C LY R + + R+ E V L +L+ K+++ F + C K A +
Sbjct: 79 SACVLYCVSRLS-----KAGRSKEDGSVSLCQILRASKLNIVDFFKEMPQFCIKVAHILT 133
Query: 106 KLPDS---FRSKIARLERNFAVSKVIFTKYLPMFKEMFKPPDLDELLMHVRHNKKKMIHC 162
L S R ++ L+ N ++ + Y ++E+F D N ++
Sbjct: 134 GLYGSDWEKRLELKELQANVVHLSLLSSYYKRAYQELFLSNDGKSSDNSSESNNQE---- 189
Query: 163 TSTKVFEFTWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANV-IQSKLRDIVNPDFE 221
++ + F W+LF++ + + DLV S + L++ ++ +V ++ + DI + +
Sbjct: 190 -ASDYYRFGWLLFLVLRIQTFSRFKDLVTSTNELVSVLAVLIIHVPVRLRNFDIKDSSYF 248
Query: 222 GMPSNFLDSHFAPLDDPPCIISILC-KHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVL 280
G S D +I+ LC KHH +E LS K L T ++
Sbjct: 249 GKKS----------DRGVSLIASLCEKHHT---------SEDELS----KALEKTNTLIM 285
Query: 281 DSLAWVSNSPLWKNIEDSGQEIPGCEQKLRGNI--EDLSA---ILEPENFDYNFKVVNKM 335
D L + C+Q I E L+ +L+ ++ + ++ K
Sbjct: 286 DILK-----------KKPCPATSACQQDNLSFIDPEGLTVFKDLLQGDSLKPSLIILEKE 334
Query: 336 YEEYILSVGDFDERIF 351
YE I + G+ DER+F
Sbjct: 335 YENAINTKGELDERMF 350
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E +L R++ +HLN EE++L+S+AW S ++ ++
Sbjct: 579 VRHEDTLPRELKRHLNSLEERLLESMAWEKGSSMYNSL 616
>sp|Q2R374|RBR2_ORYSJ Retinoblastoma-related protein 2 OS=Oryza sativa subsp. japonica
GN=RBR2 PE=2 SV=2
Length = 978
Score = 38.5 bits (88), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E +L R++ +HLN EEQ+L+S++W S L+ ++
Sbjct: 548 VRHEETLPRELKRHLNSLEEQLLESMSWEKGSSLYNSL 585
>sp|B9GLX8|RBR_POPTR Retinoblastoma-related protein OS=Populus trichocarpa GN=RBL901
PE=2 SV=1
Length = 1035
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++LDS+ W S L+ ++
Sbjct: 595 IRHEESLPRELRRHLNSLEERLLDSMVWEKGSSLYNSL 632
>sp|B1ABR6|RBR_HIEPI Retinoblastoma-related protein OS=Hieracium piloselloides GN=RBR
PE=2 SV=1
Length = 1005
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 98/242 (40%), Gaps = 34/242 (14%)
Query: 112 RSKIARLERNFAVSKVIFTKYLPMFKEMFKPP-DLDELLMHVRHNKKKMIHCTSTKVFEF 170
R + L+ NF ++ Y FK +FKP D E V ++ + +C F
Sbjct: 144 RLQAKELQANFVHLSLLSKYYKRAFKTLFKPSHDNVEGQSAVANSADYISNC-----HRF 198
Query: 171 TWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANVIQSKLRDIVNPDFEGMPSNFLDS 230
W+LF+ + DLV + L++ ++ + I ++ R+ D S
Sbjct: 199 GWLLFLALRVHAFSRFKDLVTCTNGLVSILAILIIH-IPARFRNFSMSD---------SS 248
Query: 231 HFAPLDDPPCIISILCKHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSP 290
HF DD ++ +L LC + R + N+ E++L +++
Sbjct: 249 HFVKKDDK--VVDLLAS------LCNMYETSEDELRKTMVRTNIVVEEILKKDPSMASEC 300
Query: 291 LWKNIEDSGQEIPGCEQKLRGNIEDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERI 350
N+++ + ++ +LE ++ + ++ K Y++ +L G+ DER+
Sbjct: 301 TNGNLDNIDTD----------DLTYFQDLLEEQSLSSDLDILEKDYDDAMLLEGELDERL 350
Query: 351 FL 352
F+
Sbjct: 351 FI 352
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 568 IRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSL 605
>sp|A9UL13|RBR1_WHEAT Retinoblastoma-related protein 1 OS=Triticum aestivum GN=RBR1 PE=2
SV=1
Length = 957
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E SL R++ +HLN EE++L+S+AW S ++ ++
Sbjct: 532 VRHEDSLPRELKRHLNSLEERLLESMAWEKGSSMYNSL 569
>sp|A9UL14|RBR_MEDSA Retinoblastoma-related protein OS=Medicago sativa GN=RBR PE=2 SV=1
Length = 1025
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCEQKLRGNIEDLS 317
+R E SL R++ +HLN EE++L+SL W S ++ ++ + L I LS
Sbjct: 578 IRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVA-------RPALSAEINRLS 630
Query: 318 AILEP 322
+ EP
Sbjct: 631 MLAEP 635
>sp|Q8H252|RBR_COCNU Retinoblastoma-related protein OS=Cocos nucifera GN=Rb1 PE=2 SV=1
Length = 1011
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E +L R++ +HLN EE++L+S+AW S ++ ++
Sbjct: 575 VRHEETLPRELKRHLNSLEERLLESMAWERGSSMYNSL 612
>sp|Q84QM3|RBR1_ORYSJ Retinoblastoma-related protein 1 OS=Oryza sativa subsp. japonica
GN=RBR1 PE=2 SV=1
Length = 1010
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E +L R++ +HLN EE++L+S+AW S ++ ++
Sbjct: 582 VRHEDTLPRELKRHLNSLEERLLESMAWEKGSSMYNSL 619
>sp|A2YXJ7|RBR1_ORYSI Retinoblastoma-related protein 1 OS=Oryza sativa subsp. indica
GN=RBR1 PE=3 SV=1
Length = 1010
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
VR E +L R++ +HLN EE++L+S+AW S ++ ++
Sbjct: 582 VRHEDTLPRELKRHLNSLEERLLESMAWEKGSSMYNSL 619
>sp|Q9SLZ4|RBR1_PEA Retinoblastoma-related protein 1 OS=Pisum sativum GN=RBR1 PE=2 SV=1
Length = 1026
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++L+SL W S ++ ++
Sbjct: 579 IRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSL 616
>sp|B9SVG9|RBR_RICCO Retinoblastoma-related protein OS=Ricinus communis GN=RBR PE=2 SV=1
Length = 1020
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 579 IRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSL 616
>sp|Q4JF75|RBR_SCUBA Retinoblastoma-related protein OS=Scutellaria baicalensis GN=RB
PE=2 SV=1
Length = 1006
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 567 IRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSL 604
>sp|A7P514|RBR_VITVI Retinoblastoma-related protein OS=Vitis vinifera GN=RBR PE=2 SV=1
Length = 1007
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 567 IRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSL 604
>sp|Q9SXN6|RBR1_TOBAC Retinoblastoma-related protein 1 OS=Nicotiana tabacum GN=RB1 PE=2
SV=1
Length = 961
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 569 IRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSL 606
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 22/177 (12%)
Query: 44 EGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHCKMSLNQFLNKCRKW-- 101
EG + +W LY R + NS+ EGN L +L+ K+++ F + ++
Sbjct: 64 EGVERYWFVFVLYSVKRLSEKEVGNSSNGNEGNAFSLCQILRGAKLNVVDFFKELPQFIL 123
Query: 102 ---ADMRKLPDS---FRSKIARLERNFAVSKVIFTKYLPMFKEMFKPPDLDELLMHVRHN 155
+ L S R + L+ NF V + +KY +K ++ EL + +N
Sbjct: 124 KVGPTLSNLYGSDWEKRLEAKELQTNF-VHLSLLSKY---YKRAYQ-----ELFLASGNN 174
Query: 156 KKKMIHCTSTKV-----FEFTWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANV 207
+ K +S+ + + F W+LF+ + DLV + L++ ++ +V
Sbjct: 175 EDKPSATSSSAIHLPQYYRFGWLLFLSLRIHVFSRFKDLVTCTNGLVSVLAILIIHV 231
>sp|Q66WV0|RBR1_NICBE Retinoblastoma-related protein 1 OS=Nicotiana benthamiana GN=RBR1
PE=2 SV=1
Length = 1003
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 570 IRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSL 607
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 42 TLEGSQLHWLGCSLYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHCKMSLNQFLNKCRKW 101
T EG + +W LY R + NSN +GN L +L+ K+++ F + ++
Sbjct: 63 TQEGVERYWFVFVLYSVKRLSEKEAGNSNNGDKGNAFSLCQILRGAKLNVVDFFKELPQF 122
Query: 102 -----ADMRKLPDS---FRSKIARLERNFAVSKVIFTKYLPMFKEMFKPPDLDELLMHVR 153
+ L S R ++ L+ NF ++ Y ++E+F +E
Sbjct: 123 ILKVGPTLSNLYGSDWEKRLEVKELQTNFVHLSLLSKYYKRAYQELFLASGNNEDKPSAT 182
Query: 154 HNKKKMIHCTSTKVFEFTWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANV 207
N IH + + F W+LF+ + DLV + L++ ++ +V
Sbjct: 183 SN--SAIHL--PQYYRFGWLLFLSLRIHVFSRFKDLVTCTNGLVSVLAILMIHV 232
>sp|Q9LKZ3|RBR1_ARATH Retinoblastoma-related protein 1 OS=Arabidopsis thaliana GN=RBR1
PE=1 SV=1
Length = 1013
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E SL R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 570 IRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSL 607
>sp|O82677|RBR_CHERU Retinoblastoma-related protein OS=Chenopodium rubrum GN=RB PE=2
SV=1
Length = 1012
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPL 291
+R E SL R++ +HLN EE++L+S+AW S +
Sbjct: 567 IRHEDSLPRELRRHLNSLEERLLESMAWEKGSSM 600
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 125/314 (39%), Gaps = 56/314 (17%)
Query: 55 LYVSCRKATVPTVNSNRTIEGNLVCLTSLLKHCKMSLNQFLNKCRKW--------ADMRK 106
LY S R T +++ + + L LK K++L F + ++ +DM
Sbjct: 67 LYASKRLGAKTTGDASEGSNQSGITLCQKLKAVKLNLVDFFKELPQFVVKIGPILSDMYG 126
Query: 107 LPDSFRSKIARLERNFAVSKVIFTKYLPMFKEMFKPPDLDELLMHVRHNKKKMIHCTSTK 166
R + L+ NF ++ Y ++E FK ++D+ + + + +
Sbjct: 127 ADWEKRLEAKELQANFVHLSLLSKYYKRAYQEFFKTNEVDKEVA----DPGTSSSDSISD 182
Query: 167 VFEFTWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANVIQSKLRDIVN---PDFEGM 223
+ F W+LF+ + DLV + +++ ++ + I ++LR P FE
Sbjct: 183 YYRFGWLLFLALRVHAFSRFKDLVTCTNGIVSVLAILIIH-IPARLRKFSALDLPLFE-- 239
Query: 224 PSNFLDSHFAPLDDPPCIISILCKHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSL 283
+D +++ LC+ +D S D VKH+ +++ L
Sbjct: 240 ---------KKIDRGVNLVASLCQKYDT-------------SEDEVKHMMEKANELI--L 275
Query: 284 AWVSNSPLWKNIEDSGQEIPGCEQKLRGNIE--DLSA---ILEPENFDYNFKVVNKMYEE 338
+ +P ++ C+ + NI+ DL+ +LE + ++ K Y+
Sbjct: 276 EILKKNPCSASL---------CKTENLENIDPDDLTYFEDLLEDSSLPNCISMLEKDYDA 326
Query: 339 YILSVGDFDERIFL 352
I + GD DER+F+
Sbjct: 327 AIWNKGDIDERVFV 340
>sp|B1ABS0|RBR_HIEPL Retinoblastoma-related protein OS=Hieracium pilosella GN=RBR PE=2
SV=1
Length = 1008
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 258 VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+R E L R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 568 IRHEEPLPRELRRHLNSLEERLLESMVWEKGSSMYNSL 605
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 47/242 (19%), Positives = 96/242 (39%), Gaps = 34/242 (14%)
Query: 112 RSKIARLERNFAVSKVIFTKYLPMFKEMFKPPDLD-ELLMHVRHNKKKMIHCTSTKVFEF 170
R + L+ NF ++ Y FK +FK + E V ++ + +C F
Sbjct: 144 RLQAKELQANFVHLSLLSKFYKRAFKTLFKATHENVEGQSAVANSADYISNC-----HRF 198
Query: 171 TWILFVLTKAEYLDVSNDLVNSFHLLIATCDLIYANVIQSKLRDIVNPDFEGMPSNFLDS 230
W+LF+ + DLV + L++ ++ + I ++ R+ D S
Sbjct: 199 GWMLFLALRVHAFSRFKDLVTCTNGLVSILAILIIH-IPARFRNFSMSD---------SS 248
Query: 231 HFAPLDDPPCIISILCKHHDGCKLCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSP 290
F DD ++ +L LC + R V N+ E++L +++
Sbjct: 249 RFVKKDDK--VVDLLAS------LCNMYETSEDELRKTVVRTNIVVEEILKKDPSMASEC 300
Query: 291 LWKNIEDSGQEIPGCEQKLRGNIEDLSAILEPENFDYNFKVVNKMYEEYILSVGDFDERI 350
N+++ + ++ +LE ++ + V+ K Y++ +L G+ DER+
Sbjct: 301 TNGNLDNIDTD----------DLTYFQDLLEEQSLSSDLDVLEKDYDDAMLLEGELDERL 350
Query: 351 FL 352
F+
Sbjct: 351 FI 352
>sp|Q2ABE5|RBR_CAMSI Retinoblastoma-related protein OS=Camellia sinensis GN=pRB PE=2
SV=1
Length = 1025
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 254 LCVIVRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKNI 295
+ V R + SL R++ +HLN EE++L+S+ W S ++ ++
Sbjct: 582 IGVSFRLKESLPRELKRHLNSLEERLLESMVWEKGSSMYNSL 623
>sp|B3EWI1|GSPRX_MARGR Glutathione amide-dependent peroxidase OS=Marichromatium gracile
GN=garA PE=1 SV=1
Length = 247
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 216 VNPDFEGMPSNFLDS-----HFAPLDDPPCIISILCKHHDGCKLCVIVRAEASLSRDIVK 270
+ P+ EG P D+ H AP P +S+ + DGC CV+ + + +
Sbjct: 144 IEPEVEGDPYEVSDADTMLAHLAPNAPKPMDVSVFTR--DGCPFCVMAKEALRNAGIDFE 201
Query: 271 HLNLTEEQVLDSLAWVSNSPLWKNIEDSGQEIPGCE 306
L L E+ +L V+N+ +E +G+ I G E
Sbjct: 202 ELVLNEDYTEQTLRAVANAV--PQVEVNGELIGGSE 235
>sp|B1H0C7|MUTL_UNCTG DNA mismatch repair protein MutL OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=mutL PE=3 SV=1
Length = 595
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 320 LEPENFDYNFKVVNKMYEEYILSVGDFDERIF 351
L PENFD N KV+ ++++ YI++ D IF
Sbjct: 400 LTPENFDSNIKVIGQVFDTYIIASNKGDLYIF 431
>sp|Q9A649|EX7L_CAUCR Exodeoxyribonuclease 7 large subunit OS=Caulobacter crescentus
(strain ATCC 19089 / CB15) GN=xseA PE=3 SV=1
Length = 505
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 267 DIVKHLNLTEEQVLDSLAWVSNSP-LWKNIEDSGQEIPGCEQKLRGNIEDLSAILEPEN- 324
D+ + L+L + D +A + P LW + +GQ + N+E L L PE
Sbjct: 373 DLSRRLDLAARRAPDRVAQHARLPALWDRLNAAGQRRLQRDADRLENLEKLRQSLNPERP 432
Query: 325 FDYNFKVVNKMYEEYILSVGDF--DERIFLPKFQSFDETA 362
+ F +V K S D ER+ L KF+S D A
Sbjct: 433 LELGFALVRKGDGTLARSAADLVSGERVNL-KFKSGDRDA 471
>sp|B8GYM1|EX7L_CAUCN Exodeoxyribonuclease 7 large subunit OS=Caulobacter crescentus
(strain NA1000 / CB15N) GN=xseA PE=3 SV=1
Length = 505
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 267 DIVKHLNLTEEQVLDSLAWVSNSP-LWKNIEDSGQEIPGCEQKLRGNIEDLSAILEPEN- 324
D+ + L+L + D +A + P LW + +GQ + N+E L L PE
Sbjct: 373 DLSRRLDLAARRAPDRVAQHARLPALWDRLNAAGQRRLQRDADRLENLEKLRQSLNPERP 432
Query: 325 FDYNFKVVNKMYEEYILSVGDF--DERIFLPKFQSFDETA 362
+ F +V K S D ER+ L KF+S D A
Sbjct: 433 LELGFALVRKGDGTLARSAADLVSGERVNL-KFKSGDRDA 471
>sp|Q9LN49|KCS4_ARATH 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1
Length = 516
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 105 RKLPDSFRS---KIARLERNFAVSKVIFTKYLPMF------KEMFKPPDLDELLMHVRHN 155
R LPD +S K +L ++ +S ++ P+ P DL +L +H+++N
Sbjct: 27 RMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVISVEASQMNPDDLKQLWIHLQYN 86
Query: 156 KKKMIHCTSTKVFEFTWILFVLTK 179
+I C++ VF T ++V+T+
Sbjct: 87 LVSIIICSAILVFGLT--VYVMTR 108
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sua7 PE=3 SV=1
Length = 340
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 16 LCMALNIDSTTAKEAWNAYKEMSHHYTLEG-SQLHWLGCSLYVSCRKATVP 65
+C A+++ A A YK + H L+G S + +Y++CR+ VP
Sbjct: 128 MCDAISLPKVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVP 178
>sp|O75678|RFPL2_HUMAN Ret finger protein-like 2 OS=Homo sapiens GN=RFPL2 PE=2 SV=3
Length = 378
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 240 CIISILCKHHDGCKLCVI-----VRAEASLSRDIVKHLNLTEEQVLDSLAWVSNSPLWKN 294
C+ ++LC H D + VI +R E RD V NLT ++ + + S WK
Sbjct: 19 CLCAVLCGHWDFADMMVIRSLSLIRLEGVEGRDPVGGGNLTNKRPSCAPSPQDLSAQWKQ 78
Query: 295 IEDSG 299
+ED G
Sbjct: 79 LEDRG 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,269,496
Number of Sequences: 539616
Number of extensions: 6941267
Number of successful extensions: 17449
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 17330
Number of HSP's gapped (non-prelim): 99
length of query: 407
length of database: 191,569,459
effective HSP length: 120
effective length of query: 287
effective length of database: 126,815,539
effective search space: 36396059693
effective search space used: 36396059693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)